@precisionutilityguild/liquid-shadow 1.0.7 → 1.0.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +3 -3
- package/dist/data/migrations/000_baseline.sql +10 -0
- package/dist/data/migrations/013_file_claims.sql +18 -0
- package/dist/entry/cli/index.js +259 -204
- package/dist/entry/ember/index.js +81 -28
- package/dist/entry/mcp/server.js +281 -226
- package/dist/index.js +282 -227
- package/dist/logic/parser/index.js +16 -14
- package/dist/web-manifest.json +4 -1
- package/package.json +1 -1
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Ft}from"node:url";import{dirname as Ut,join as Ae}from"node:path";import{existsSync as xe}from"node:fs";function Bt(){if(ke.endsWith(".ts")){let e=Ae(we,"worker.ts");if(xe(e))return e}let s=Ae(we,"worker.js");return xe(s)?s:Me("dist/logic/domain/embeddings/worker.js")}function x(s){return A||(A=new H(s)),A}async function ve(){A&&(await A.shutdown(),A=null)}var ke,we,H,A,He=P(()=>{"use strict";M();Ce();ke=Ft(import.meta.url),we=Ut(ke);H=class{workers=[];taskQueue=[];pendingTasks=new Map;taskIdCounter=0;initialized=!1;initPromise;shutdownRequested=!1;numWorkers;cacheDir;initTimeout;constructor(e={}){this.numWorkers=e.numWorkers??Math.max(1,Math.min(2,Wt().length-1)),this.cacheDir=e.cacheDir??"./.cache",this.initTimeout=e.initTimeout??6e4}async initialize(){if(!this.initialized)return this.initPromise?this.initPromise:(this.initPromise=this._doInitialize(),this.initPromise)}async _doInitialize(){let e;try{d.info({numWorkers:this.numWorkers},"Initializing embedding worker pool");let t=new Promise((i,n)=>{e=setTimeout(()=>n(new Error(`Worker pool initialization timed out after ${this.initTimeout}ms`)),this.initTimeout)});if(await Promise.race([this._initializeWorkers(),t]),e&&clearTimeout(e),this.shutdownRequested){this.initialized=!1,this.initPromise=void 0,d.debug("Initialization completed but shutdown was requested");return}this.initialized=!0,d.info({numWorkers:this.workers.length},"Embedding worker pool ready")}catch(t){throw e&&clearTimeout(e),this.initPromise=void 0,this.initialized=!1,await this.shutdown(),t}}async _initializeWorkers(){let e=Bt();d.debug({workerPath:e},"Resolved worker path");let t=[];for(let i=0;i<this.numWorkers;i++)i>0&&await new Promise(n=>setTimeout(n,25)),t.push(this.createWorker(e,i));await Promise.all(t)}async createWorker(e,t){return new Promise((i,n)=>{let r=setTimeout(()=>{n(new Error(`Worker ${t} initialization timed out`))},this.initTimeout),c=new Ht(e,{workerData:{cacheDir:this.cacheDir},execArgv:process.execArgv}),l={worker:c,busy:!1,currentTaskId:null};c.on("message",a=>{if(a.type==="ready"){if(clearTimeout(r),this.shutdownRequested){d.debug({workerIndex:t},"Worker ready but shutdown requested, terminating"),c.terminate().catch(()=>{}),i();return}this.workers.push(l),d.debug({workerIndex:t},"Worker ready"),i()}else a.type==="result"&&a.id?this.handleTaskComplete(l,a.id,a.embeddings||[]):a.type==="error"&&a.id&&this.handleTaskError(l,a.id,new Error(a.error||"Unknown error"))}),c.on("error",a=>{if(clearTimeout(r),d.error({err:a,workerIndex:t},"Worker error"),l.currentTaskId&&this.handleTaskError(l,l.currentTaskId,a),!this.initialized){n(a);return}let o=this.workers.indexOf(l);o!==-1&&this.workers.splice(o,1),!this.shutdownRequested&&this.initialized&&this.createWorker(e,t).catch(u=>{d.error({err:u},"Failed to replace crashed worker")})}),c.on("exit",a=>{a!==0&&!this.shutdownRequested&&d.warn({workerIndex:t,code:a},"Worker exited unexpectedly")})})}handleTaskComplete(e,t,i){let n=this.pendingTasks.get(t);n&&(this.pendingTasks.delete(t),n.resolve(i)),e.busy=!1,e.currentTaskId=null,this.processQueue()}handleTaskError(e,t,i){let n=this.pendingTasks.get(t);n&&(this.pendingTasks.delete(t),n.reject(i)),e.busy=!1,e.currentTaskId=null,this.processQueue()}processQueue(){if(this.taskQueue.length===0)return;let e=this.workers.find(i=>!i.busy);if(!e)return;let t=this.taskQueue.shift();t&&(e.busy=!0,e.currentTaskId=t.id,this.pendingTasks.set(t.id,t),e.worker.postMessage({type:"embed",id:t.id,texts:t.texts}))}async generateEmbeddings(e,t=128,i){if(this.initialized||await this.initialize(),e.length===0)return[];let n=[];for(let o=0;o<e.length;o+=t)n.push(e.slice(o,o+t));let r=new Array(n.length),c=0,l=n.map((o,u)=>new Promise((p,m)=>{let f={id:`task_${++this.taskIdCounter}`,texts:o,resolve:T=>{if(r[u]=T,c++,i){let N=Math.min(c*t,e.length);i(N,e.length)}p()},reject:T=>{if(r[u]=new Array(o.length).fill(null),c++,d.warn({err:T,chunkIndex:u},"Chunk embedding failed"),i){let N=Math.min(c*t,e.length);i(N,e.length)}p()}};this.taskQueue.push(f),this.processQueue()}));await Promise.all(l);let a=[];for(let o of r)a.push(...o);return d.info({total:e.length,successful:a.filter(o=>o!==null).length,workers:this.workers.length},"Parallel embedding generation complete"),a}get workerCount(){return this.workers.length}get busyWorkers(){return this.workers.filter(e=>e.busy).length}get queueSize(){return this.taskQueue.length}get isInitialized(){return this.initialized}async shutdown(){if(this.shutdownRequested=!0,this.initPromise)try{await this.initPromise}catch{}if(!this.initialized&&this.workers.length===0){this.shutdownRequested=!1,this.initPromise=void 0;return}d.info({numWorkers:this.workers.length},"Shutting down embedding worker pool");let e=this.workers.map(t=>new Promise(i=>{t.worker.postMessage({type:"shutdown"}),t.worker.once("exit",()=>i()),setTimeout(()=>{t.worker.terminate().then(()=>i())},5e3)}));await Promise.all(e),this.workers=[],this.taskQueue=[],this.pendingTasks.clear(),this.initialized=!1,this.shutdownRequested=!1,d.info("Embedding worker pool shutdown complete")}},A=null});var I={};at(I,{EmbeddingPriorityQueue:()=>ce,EmbeddingWorkerPool:()=>H,cosineSimilarity:()=>qt,generateEmbedding:()=>Yt,generateEmbeddingsBatch:()=>Kt,getDefaultPool:()=>x,setUseWorkerThreads:()=>$t,shutdownDefaultPool:()=>ve});async function Pt(){return W||(W=await import("@xenova/transformers"),W.env.cacheDir="./.cache",W.env.allowLocalModels=!0),W}function $t(s){ue=s,d.info({useWorkerThreads:s},"Worker thread mode updated")}function We(s=!1){let e=(F||"").toLowerCase(),t={};return F&&(t.dtype=F),s?(t.quantized=!1,t):(e==="fp32"||e==="fp16"||e==="float32"||e==="float16"?t.quantized=!1:e.startsWith("q")&&(t.quantized=!0),t)}async function zt(){d.info({model:G,dtype:F},"Loading embedding model...");let{pipeline:s}=await Pt(),e=We(!1);try{return await s("feature-extraction",G,e)}catch(t){let i=t?.message||"";if(!(i.includes("/onnx/model_quantized.onnx")||i.includes("model_quantized.onnx")))throw t;return d.warn({model:G,dtype:F},"Quantized ONNX artifact missing, retrying with unquantized ONNX"),await s("feature-extraction",G,We(!0))}}async function Ue(){return le||(le=zt()),le}async function Yt(s){try{let t=await(await Ue())(s,{pooling:"mean",normalize:!0});return Array.from(t.data)}catch(e){return d.error({err:e},"Failed to generate embedding"),null}}async function Kt(s,e=Fe,t){return s.length===0?[]:ue?x().generateEmbeddings(s,e,t):Be(s,e,t)}async function Be(s,e,t){let i=new Array(s.length).fill(null),n=await Ue();for(let r=0;r<s.length;r+=e){let c=Math.min(r+e,s.length),l=s.slice(r,c);try{let a=await n(l,{pooling:"mean",normalize:!0}),[o,u]=a.dims;for(let p=0;p<o;p++){let m=p*u,y=m+u;i[r+p]=Array.from(a.data.slice(m,y))}}catch(a){d.error({err:a,batchStart:r,batchEnd:c},"Single-threaded batch embedding failed, falling back to sequential for this chunk");for(let o=0;o<l.length;o++)try{let u=l[o];if(!u||u.trim().length===0)continue;let p=await n(u,{pooling:"mean",normalize:!0});i[r+o]=Array.from(p.data)}catch{i[r+o]=null}}t&&t(c,s.length)}return d.debug({total:s.length,successful:i.filter(r=>r!==null).length},"Batch embedding complete"),i}function qt(s,e){let t=0,i=0,n=0;for(let r=0;r<s.length;r++)t+=s[r]*e[r],i+=s[r]*s[r],n+=e[r]*e[r];return t/(Math.sqrt(i)*Math.sqrt(n))}var G,F,W,Fe,ue,le,ce,S=P(()=>{"use strict";M();He();G=process.env.EMBEDDING_MODEL??"Xenova/all-MiniLM-L6-v2",F=process.env.EMBEDDING_DTYPE??"fp32",W=null;Fe=128,ue=!1;le=null;ce=class{queue=[];processing=!1;results=new Map;enqueue(e){this.queue.push(e),this.queue.sort((t,i)=>i.priority-t.priority)}enqueueMany(e){this.queue.push(...e),this.queue.sort((t,i)=>i.priority-t.priority)}get size(){return this.queue.length}get isProcessing(){return this.processing}getResult(e){return this.results.get(e)}async processQueue(e=Fe,t){if(this.processing)return d.warn("Queue processing already in progress"),this.results;this.processing=!0;let i=this.queue.length;try{ue?await this.processQueueParallel(e,i,t):await this.processQueueSequential(e,i,t)}finally{this.processing=!1}return this.results}async processQueueSequential(e,t,i){for(;this.queue.length>0;){let n=this.queue.splice(0,e),r=n.map(l=>l.text),c=await Be(r,r.length);if(n.forEach((l,a)=>{this.results.set(l.id,c[a])}),i){let l=t-this.queue.length;i(l,t)}}}async processQueueParallel(e,t,i){let n=this.queue.splice(0),r=n.map(a=>a.text),l=await x().generateEmbeddings(r,e,(a,o)=>{i&&i(a,o)});n.forEach((a,o)=>{this.results.set(a.id,l[o])})}clear(){this.queue=[],this.results.clear()}}});import de from"node:os";M();import yt from"better-sqlite3";import z from"path";import Te from"fs";import Tt from"crypto";M();import O from"fs";import $ from"path";import{fileURLToPath as dt}from"url";var R=d.child({module:"migrations"}),pt=dt(import.meta.url),mt=$.dirname(pt);function Et(){let s=mt;if(O.readdirSync(s).some(i=>i.match(/^\d{3}_.*\.sql$/)))return s;let t=$.resolve(s,"../../data/migrations");return O.existsSync(t)&&O.readdirSync(t).some(i=>i.match(/^\d{3}_.*\.sql$/))?t:s}function ht(s){s.exec(`
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var at=Object.defineProperty;var P=(s,e)=>()=>(s&&(e=s(s=0)),e);var lt=(s,e)=>{for(var t in e)at(s,t,{get:e[t],enumerable:!0})};import ct from"pino";var ut,dt,d,M=P(()=>{"use strict";ut={10:"TRACE",20:"DEBUG",30:"INFO",40:"WARN",50:"ERROR",60:"FATAL"},dt=ct({level:process.env.LOG_LEVEL||"warn",base:{service:"liquid-shadow"},formatters:{level(s,e){return{level:s,severity:ut[e]??"INFO"}}},transport:{target:"pino-pretty",options:{colorize:!0,translateTime:"HH:MM:ss",destination:2,levelKey:"severity",messageKey:"message"}}}),d=dt});import{fileURLToPath as xt}from"node:url";import{dirname as le,join as Me,resolve as wt}from"node:path";import{existsSync as kt}from"node:fs";function Wt(){let s=Ce;for(;s!==le(s);){if(kt(Me(s,"package.json")))return s;s=le(s)}return wt(Ce,"..","..")}function De(...s){return Me(Wt(),...s)}var Ft,Ce,Ae=P(()=>{"use strict";Ft=xt(import.meta.url),Ce=le(Ft)});import{Worker as Ht}from"node:worker_threads";import{cpus as vt}from"node:os";import{fileURLToPath as Bt}from"node:url";import{dirname as Ut,join as xe}from"node:path";import{existsSync as we}from"node:fs";function Pt(){if(Fe.endsWith(".ts")){let e=xe(ke,"worker.ts");if(we(e))return e}let s=xe(ke,"worker.js");return we(s)?s:De("dist/logic/domain/embeddings/worker.js")}function x(s){return A||(A=new W(s)),A}async function We(){A&&(await A.shutdown(),A=null)}var Fe,ke,W,A,He=P(()=>{"use strict";M();Ae();Fe=Bt(import.meta.url),ke=Ut(Fe);W=class{workers=[];taskQueue=[];pendingTasks=new Map;taskIdCounter=0;initialized=!1;initPromise;shutdownRequested=!1;numWorkers;cacheDir;initTimeout;constructor(e={}){this.numWorkers=e.numWorkers??Math.max(1,Math.min(2,vt().length-1)),this.cacheDir=e.cacheDir??"./.cache",this.initTimeout=e.initTimeout??6e4}async initialize(){if(!this.initialized)return this.initPromise?this.initPromise:(this.initPromise=this._doInitialize(),this.initPromise)}async _doInitialize(){let e;try{d.info({numWorkers:this.numWorkers},"Initializing embedding worker pool");let t=new 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Ht(e,{workerData:{cacheDir:this.cacheDir},execArgv:process.execArgv}),l={worker:c,busy:!1,currentTaskId:null};c.on("message",a=>{if(a.type==="ready"){if(clearTimeout(r),this.shutdownRequested){d.debug({workerIndex:t},"Worker ready but shutdown requested, terminating"),c.terminate().catch(()=>{}),i();return}this.workers.push(l),d.debug({workerIndex:t},"Worker ready"),i()}else a.type==="result"&&a.id?this.handleTaskComplete(l,a.id,a.embeddings||[]):a.type==="error"&&a.id&&this.handleTaskError(l,a.id,new Error(a.error||"Unknown error"))}),c.on("error",a=>{if(clearTimeout(r),d.error({err:a,workerIndex:t},"Worker error"),l.currentTaskId&&this.handleTaskError(l,l.currentTaskId,a),!this.initialized){n(a);return}let o=this.workers.indexOf(l);o!==-1&&this.workers.splice(o,1),!this.shutdownRequested&&this.initialized&&this.createWorker(e,t).catch(u=>{d.error({err:u},"Failed to replace crashed worker")})}),c.on("exit",a=>{a!==0&&!this.shutdownRequested&&d.warn({workerIndex:t,code:a},"Worker exited unexpectedly")})})}handleTaskComplete(e,t,i){let n=this.pendingTasks.get(t);n&&(this.pendingTasks.delete(t),n.resolve(i)),e.busy=!1,e.currentTaskId=null,this.processQueue()}handleTaskError(e,t,i){let n=this.pendingTasks.get(t);n&&(this.pendingTasks.delete(t),n.reject(i)),e.busy=!1,e.currentTaskId=null,this.processQueue()}processQueue(){if(this.taskQueue.length===0)return;let e=this.workers.find(i=>!i.busy);if(!e)return;let t=this.taskQueue.shift();t&&(e.busy=!0,e.currentTaskId=t.id,this.pendingTasks.set(t.id,t),e.worker.postMessage({type:"embed",id:t.id,texts:t.texts}))}async generateEmbeddings(e,t=128,i){if(this.initialized||await this.initialize(),e.length===0)return[];let n=[];for(let o=0;o<e.length;o+=t)n.push(e.slice(o,o+t));let r=new Array(n.length),c=0,l=n.map((o,u)=>new Promise((m,p)=>{let g={id:`task_${++this.taskIdCounter}`,texts:o,resolve:T=>{if(r[u]=T,c++,i){let N=Math.min(c*t,e.length);i(N,e.length)}m()},reject:T=>{if(r[u]=new Array(o.length).fill(null),c++,d.warn({err:T,chunkIndex:u},"Chunk embedding failed"),i){let N=Math.min(c*t,e.length);i(N,e.length)}m()}};this.taskQueue.push(g),this.processQueue()}));await Promise.all(l);let a=[];for(let o of r)a.push(...o);return d.info({total:e.length,successful:a.filter(o=>o!==null).length,workers:this.workers.length},"Parallel embedding generation complete"),a}get workerCount(){return this.workers.length}get busyWorkers(){return this.workers.filter(e=>e.busy).length}get queueSize(){return this.taskQueue.length}get isInitialized(){return this.initialized}async shutdown(){if(this.shutdownRequested=!0,this.initPromise)try{await this.initPromise}catch{}if(!this.initialized&&this.workers.length===0){this.shutdownRequested=!1,this.initPromise=void 0;return}d.info({numWorkers:this.workers.length},"Shutting down embedding worker pool");let e=this.workers.map(t=>new Promise(i=>{t.worker.postMessage({type:"shutdown"}),t.worker.once("exit",()=>i()),setTimeout(()=>{t.worker.terminate().then(()=>i())},5e3)}));await Promise.all(e),this.workers=[],this.taskQueue=[],this.pendingTasks.clear(),this.initialized=!1,this.shutdownRequested=!1,d.info("Embedding worker pool shutdown complete")}},A=null});var I={};lt(I,{EmbeddingPriorityQueue:()=>ue,EmbeddingWorkerPool:()=>W,cosineSimilarity:()=>qt,generateEmbedding:()=>Kt,generateEmbeddingsBatch:()=>jt,getDefaultPool:()=>x,setUseWorkerThreads:()=>zt,shutdownDefaultPool:()=>We});async function $t(){return H||(H=await import("@xenova/transformers"),H.env.cacheDir="./.cache",H.env.allowLocalModels=!0),H}function zt(s){de=s,d.info({useWorkerThreads:s},"Worker thread mode updated")}function ve(s=!1){let e=(v||"").toLowerCase(),t={};return v&&(t.dtype=v),s?(t.quantized=!1,t):(e==="fp32"||e==="fp16"||e==="float32"||e==="float16"?t.quantized=!1:e.startsWith("q")&&(t.quantized=!0),t)}async function Yt(){d.info({model:G,dtype:v},"Loading embedding model...");let{pipeline:s}=await $t(),e=ve(!1);try{return await s("feature-extraction",G,e)}catch(t){let i=t?.message||"";if(!(i.includes("/onnx/model_quantized.onnx")||i.includes("model_quantized.onnx")))throw t;return d.warn({model:G,dtype:v},"Quantized ONNX artifact missing, retrying with unquantized ONNX"),await s("feature-extraction",G,ve(!0))}}async function Ue(){return ce||(ce=Yt()),ce}async function Kt(s){try{let t=await(await Ue())(s,{pooling:"mean",normalize:!0});return Array.from(t.data)}catch(e){return d.error({err:e},"Failed to generate embedding"),null}}async function jt(s,e=Be,t){return s.length===0?[]:de?x().generateEmbeddings(s,e,t):Pe(s,e,t)}async function Pe(s,e,t){let i=new Array(s.length).fill(null),n=await Ue();for(let r=0;r<s.length;r+=e){let c=Math.min(r+e,s.length),l=s.slice(r,c);try{let a=await n(l,{pooling:"mean",normalize:!0}),[o,u]=a.dims;for(let m=0;m<o;m++){let p=m*u,y=p+u;i[r+m]=Array.from(a.data.slice(p,y))}}catch(a){d.error({err:a,batchStart:r,batchEnd:c},"Single-threaded batch embedding failed, falling back to sequential for this chunk");for(let o=0;o<l.length;o++)try{let u=l[o];if(!u||u.trim().length===0)continue;let m=await n(u,{pooling:"mean",normalize:!0});i[r+o]=Array.from(m.data)}catch{i[r+o]=null}}t&&t(c,s.length)}return d.debug({total:s.length,successful:i.filter(r=>r!==null).length},"Batch embedding complete"),i}function qt(s,e){let t=0,i=0,n=0;for(let r=0;r<s.length;r++)t+=s[r]*e[r],i+=s[r]*s[r],n+=e[r]*e[r];return t/(Math.sqrt(i)*Math.sqrt(n))}var G,v,H,Be,de,ce,ue,L=P(()=>{"use strict";M();He();G=process.env.EMBEDDING_MODEL??"Xenova/all-MiniLM-L6-v2",v=process.env.EMBEDDING_DTYPE??"fp32",H=null;Be=128,de=!1;ce=null;ue=class{queue=[];processing=!1;results=new Map;enqueue(e){this.queue.push(e),this.queue.sort((t,i)=>i.priority-t.priority)}enqueueMany(e){this.queue.push(...e),this.queue.sort((t,i)=>i.priority-t.priority)}get size(){return this.queue.length}get isProcessing(){return this.processing}getResult(e){return this.results.get(e)}async processQueue(e=Be,t){if(this.processing)return d.warn("Queue processing already in progress"),this.results;this.processing=!0;let i=this.queue.length;try{de?await this.processQueueParallel(e,i,t):await this.processQueueSequential(e,i,t)}finally{this.processing=!1}return this.results}async processQueueSequential(e,t,i){for(;this.queue.length>0;){let n=this.queue.splice(0,e),r=n.map(l=>l.text),c=await Pe(r,r.length);if(n.forEach((l,a)=>{this.results.set(l.id,c[a])}),i){let l=t-this.queue.length;i(l,t)}}}async processQueueParallel(e,t,i){let n=this.queue.splice(0),r=n.map(a=>a.text),l=await x().generateEmbeddings(r,e,(a,o)=>{i&&i(a,o)});n.forEach((a,o)=>{this.results.set(a.id,l[o])})}clear(){this.queue=[],this.results.clear()}}});import me from"node:os";M();import Tt from"better-sqlite3";import z from"path";import Re from"fs";import Rt from"crypto";M();import O from"fs";import $ from"path";import{fileURLToPath as mt}from"url";var R=d.child({module:"migrations"}),pt=mt(import.meta.url),Et=$.dirname(pt);function ht(){let s=Et;if(O.readdirSync(s).some(i=>i.match(/^\d{3}_.*\.sql$/)))return s;let t=$.resolve(s,"../../data/migrations");return O.existsSync(t)&&O.readdirSync(t).some(i=>i.match(/^\d{3}_.*\.sql$/))?t:s}function ft(s){s.exec(`
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CREATE TABLE IF NOT EXISTS schema_migrations (
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version INTEGER PRIMARY KEY,
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name TEXT NOT NULL,
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applied_at REAL DEFAULT (unixepoch())
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);
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-
`)}function gt(s){
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+
`)}function gt(s){ft(s);let e=s.prepare("SELECT version FROM schema_migrations ORDER BY version").all();return new Set(e.map(t=>t.version))}function _t(s){return O.readdirSync(s).filter(t=>t.match(/^\d{3}_.*\.sql$/)&&!t.startsWith("000_")).sort().map(t=>{let i=t.match(/^(\d{3})_(.+)\.sql$/),n=parseInt(i[1],10),r=i[2],l=O.readFileSync($.join(s,t),"utf-8").split(/^-- DOWN$/m);return{version:n,name:r,up:l[0].trim(),down:l[1]?.trim()}})}function bt(s,e){R.info({version:e.version,name:e.name},"Applying migration"),s.transaction(()=>{s.exec(e.up),s.prepare("INSERT INTO schema_migrations (version, name) VALUES (?, ?)").run(e.version,e.name)})(),R.info({version:e.version},"Migration applied successfully")}function yt(s,e,t){let i=$.join(e,"000_baseline.sql");if(!O.existsSync(i)){R.warn("000_baseline.sql not found \u2014 falling back to incremental migrations");return}R.info("Fresh database detected \u2014 applying consolidated baseline schema");let n=O.readFileSync(i,"utf-8");s.transaction(()=>{s.exec(n);let r=s.prepare("INSERT OR IGNORE INTO schema_migrations (version, name) VALUES (?, ?)");for(let c of t)r.run(c.version,c.name)})(),R.info({stamped:t.length},"Baseline applied \u2014 incremental migrations stamped")}function Te(s){let e=gt(s),t=ht(),i=_t(t);if(e.size===0){yt(s,t,i);return}let n=i.filter(r=>!e.has(r.version));if(n.length===0){R.debug("No pending migrations");return}R.info({count:n.length},"Running pending migrations");for(let r of n)bt(s,r);R.info("All migrations complete")}import St from"os";var D=d.child({module:"db"});function oe(s){let e=St.homedir(),t=z.join(e,".mcp-liquid-shadow"),i=z.join(t,"dbs");Re.existsSync(i)||Re.mkdirSync(i,{recursive:!0});let n=Rt.createHash("sha256").update(s).digest("hex").substring(0,12),c=`${z.basename(s).replace(/[^a-zA-Z0-9-_]/g,"_")}_${n}.db`;return z.join(i,c)}function Lt(s,e){let t=e||oe(s);D.debug({repoPath:s,dbPath:t},"Initializing database");let i=new Tt(t);return i.pragma("journal_mode = WAL"),i.pragma("busy_timeout = 5000"),Te(i),Y.set(s,t),S.set(t,i),D.debug({repoPath:s,dbPath:t},"Database initialized successfully"),i}var S=new Map,Y=new Map;function F(s){let e=Y.get(s)||oe(s),t=S.get(e);if(t){if(t.open)return t;S.delete(e)}let i=Lt(s);return S.set(e,i),i}function Se(s){let e=Y.get(s)||oe(s),t=S.get(e);t&&(t.open&&(D.debug({repoPath:s,dbPath:e},"Closing database connection"),t.close()),S.delete(e)),Y.delete(s)}function Le(){for(let[s,e]of S.entries())try{e.open&&(D.debug({dbPath:s},"Closing database connection"),e.close())}catch(t){D.error({dbPath:s,err:t},"Error closing database execution")}S.clear()}process.on("exit",()=>Le());var Ne=s=>{D.debug({signal:s},"Received termination signal, closing databases"),Le(),process.exit(0)};process.on("SIGINT",()=>Ne("SIGINT"));process.on("SIGTERM",()=>Ne("SIGTERM"));import At from"path";var E=class{db;constructor(e){this.db=e}get database(){return this.db}all(e,...t){return this.db.prepare(e).all(...t)}get(e,...t){return this.db.prepare(e).get(...t)}run(e,...t){return this.db.prepare(e).run(...t).changes}insert(e,...t){return this.db.prepare(e).run(...t).lastInsertRowid}transaction(e){return this.db.transaction(e)()}};var Nt=new Set(["any","unknown","never","void","null","undefined","string","number","boolean","symbol","object","bigint","readonly","keyof","infer","extends","implements","class","interface","type","function","new"]);function Ot(s,e){if(!s)return!1;let t=s.trim();return!t||Nt.has(t.toLowerCase())||e.has(t)?!1:/^[A-Za-z_$][A-Za-z0-9_$.]*$/.test(t)}function It(s){return s.split(/[,|&]/).map(e=>e.trim()).filter(Boolean)}function Ct(s){let e=s.replace(/^[({\[]+/,"").replace(/[)}\]]+$/,"").replace(/^readonly\s+/,"").trim();return e&&e.match(/^([A-Za-z_$][A-Za-z0-9_$.]*)/)?.[1]||null}function Mt(s){let e=[],t=0,i="",n=!1;for(let r of s){if(r==="<"&&(t++,t===1)){n=!0,i="";continue}if(r===">"&&(t>0&&t--,t===0&&n)){n=!1,i.trim()&&e.push(i),i="";continue}n&&(i+=r)}return e}function Dt(s){let e=new Set;for(let t of s){let i=t.split(",").map(n=>n.trim());for(let n of i){let r=n.match(/^([A-Za-z_$][A-Za-z0-9_$]*)/);r?.[1]&&e.add(r[1])}}return e}function ae(s,e){let t=[];for(let i of It(s)){let n=Ct(i);n&&Ot(n,e)&&t.push(n)}return t}function Oe(s){if(!s)return[];let e=s.replace(/\s+/g," ").trim();if(!e)return[];let t=Mt(e),i=Dt(t),n=[],r=new Set,c=(o,u,m)=>{let p=`${o}:${u}`;r.has(p)||(r.add(p),n.push({relationship:o,targetName:u,...m?{metadata:m}:{}}))},l=e.match(/\bextends\s+(.+?)(?=\bimplements\b|\{|=|$)/);if(l?.[1]){let o=ae(l[1],i);for(let u of o)c("extends",u,l[1].trim())}let a=e.match(/\bimplements\s+(.+?)(?=\{|=|$)/);if(a?.[1]){let o=ae(a[1],i);for(let u of o)c("implements",u,a[1].trim())}for(let o of t){let u=/([A-Za-z_$][A-Za-z0-9_$]*)\s+extends\s+([^,>]+)/g,m=null;for(;(m=u.exec(o))!==null;){let p=m[2]?.trim();if(!p)continue;let y=ae(p,i);for(let g of y)c("constrained_by",g,p)}}return n}var K=class extends E{findByPath(e){return this.get("SELECT * FROM files WHERE path = ?",e)}findAll(e){let t="SELECT * FROM files ORDER BY path ASC";return e&&(t+=` LIMIT ${e}`),this.all(t)}getAllPaths(){return this.all("SELECT path FROM files").map(t=>t.path)}findInSubPath(e,t){let i=At.resolve(e,t),n=i.endsWith("/")?i:i+"/";return this.all(`
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SELECT * FROM files
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WHERE (path LIKE ? OR path = ?)
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ORDER BY path ASC
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@@ -50,14 +50,14 @@ var ot=Object.defineProperty;var P=(s,e)=>()=>(s&&(e=s(s=0)),e);var at=(s,e)=>{f
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OR m.id IN (${e.length>0?e.join(","):"-1"})
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)
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AND ws.file_path IS NOT NULL
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-
`,r=[];t&&r.push(t);let c=this.all(n,...r);for(let o of c){i[o.file_path]||(i[o.file_path]={score:1,reasons:[]});let u=o.status==="in-progress"||o.status==="verifying"?1:.5;i[o.file_path].score+=u;let
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+
`,r=[];t&&r.push(t);let c=this.all(n,...r);for(let o of c){i[o.file_path]||(i[o.file_path]={score:1,reasons:[]});let u=o.status==="in-progress"||o.status==="verifying"?1:.5;i[o.file_path].score+=u;let m=o.status==="in-progress"||o.status==="verifying"?"Working Set":"Lineage Bleed";i[o.file_path].reasons.push(`${m}: ${o.mission_name}`)}let l=Math.floor(Date.now()/1e3)-86400,a=this.all(`
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FROM intent_logs
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WHERE (created_at > ? OR mission_id IN (${e.length>0?e.join(","):"-1"}))
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AND file_path IS NOT NULL
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ORDER BY created_at DESC
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LIMIT 100
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`,l);for(let o of a){i[o.file_path]||(i[o.file_path]={score:1,reasons:[]});let u=o.mission_id?e.includes(o.mission_id):!1,
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`,l);for(let o of a){i[o.file_path]||(i[o.file_path]={score:1,reasons:[]});let u=o.mission_id?e.includes(o.mission_id):!1,m=u?.1:.2;i[o.file_path].score<5&&(i[o.file_path].score+=m);let p=u?`Lineage Intent: ${o.type}`:`Recent Intent: ${o.type}`;!i[o.file_path].reasons.includes(p)&&i[o.file_path].reasons.length<5&&i[o.file_path].reasons.push(p)}return i}getCount(){return this.get("SELECT COUNT(*) as count FROM files")?.count||0}getTopDirectories(e,t=8){return this.all(`
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SELECT
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SUBSTR(path, LENGTH(?) + 2,
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INSTR(SUBSTR(path, LENGTH(?) + 2), '/') - 1
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@@ -80,7 +80,7 @@ var ot=Object.defineProperty;var P=(s,e)=>()=>(s&&(e=s(s=0)),e);var at=(s,e)=>{f
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SUBSTR(path, LENGTH(?) + 2) as relPath
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FROM files
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WHERE path LIKE ? || '/%/package.json'
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-
`,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(n=>{for(let r of n)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,i,n){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),c=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),l=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),a=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),o=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),u=this.db.prepare("DELETE FROM type_graph_edges WHERE file_path = ?"),
|
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+
`,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(n=>{for(let r of n)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,i,n){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),c=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),l=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),a=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),o=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),u=this.db.prepare("DELETE FROM type_graph_edges WHERE file_path = ?"),m=this.db.prepare("INSERT INTO exports (file_path, name, kind, signature, doc, start_line, end_line, classification, capabilities, parent_id, embedding) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)"),p=this.db.prepare("INSERT INTO imports (file_path, module_specifier, imported_symbols, resolved_path) VALUES (?, ?, ?, ?)"),y=this.db.prepare("INSERT INTO configs (file_path, key, value, kind) VALUES (?, ?, ?, ?)"),g=this.db.prepare("INSERT INTO file_content (file_path, content) VALUES (?, ?)"),T=this.db.prepare("INSERT INTO event_synapses (file_path, type, name, direction, line_number, code_snippet) VALUES (?, ?, ?, ?, ?, ?)"),N=this.db.prepare("INSERT INTO type_graph_edges (file_path, source_symbol_id, source_symbol_name, target_symbol_name, relationship, line_number, metadata) VALUES (?, ?, ?, ?, ?, ?, ?)"),Je=this.db.prepare(`
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INSERT INTO files (path, mtime, last_scanned_at, classification, summary, embedding, content_hash)
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VALUES (?, ?, ?, ?, ?, ?, ?)
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ON CONFLICT(path) DO UPDATE SET
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@@ -90,7 +90,7 @@ var ot=Object.defineProperty;var P=(s,e)=>()=>(s&&(e=s(s=0)),e);var at=(s,e)=>{f
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summary=excluded.summary,
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embedding=excluded.embedding,
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content_hash=excluded.content_hash
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`),
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+
`),Qe=this.db.transaction(C=>{for(let Xe of C){let{meta:_,exports:Ee,imports:he,configs:fe,events:ge,content:B,classification:Ze,summary:et,embedding:_e,contentHash:tt}=Xe;r.run(_.path),c.run(_.path),l.run(_.path),a.run(_.path),o.run(_.path),u.run(_.path);let it=tt??(B&&i?i(B):null);if(Je.run(_.path,_.mtime,Date.now(),Ze||"Unknown",et||"",_e?JSON.stringify(_e):null,it),Ee){let h=(k,nt,st)=>{for(let f of nt){let rt=f.embedding?JSON.stringify(f.embedding):null,be=m.run(k,f.name,f.kind,f.signature,f.doc||"",f.line,f.endLine||f.line,f.classification||"Other",f.capabilities||"[]",st,rt),ye=Number(be.lastInsertRowid);if(Number.isFinite(ye)){let ot=Oe(f.signature);for(let U of ot)U.targetName!==f.name&&N.run(k,ye,f.name,U.targetName,U.relationship,f.line,U.metadata||null)}f.members&&f.members.length>0&&h(k,f.members,be.lastInsertRowid)}};h(_.path,Ee,null)}if(he)for(let h of he){let k=h.resolved_path!==void 0?h.resolved_path:n?.(h.module,_.path,t)??"";p.run(_.path,h.module,h.name,k)}if(fe)for(let h of fe)y.run(_.path,h.key,h.value,h.kind);if(B!==void 0&&g.run(_.path,B),ge)for(let h of ge)T.run(_.path,h.type,h.name,h.direction,h.line,h.snippet)}}),pe=500;for(let C=0;C<e.length;C+=pe)Qe(e.slice(C,C+pe))}getLatestScanTime(){return this.get("SELECT MAX(last_scanned_at) as t FROM files")?.t||null}buildContentFtsQuery(e){let t=e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(r=>r.trim()).filter(r=>r.length>=2).slice(0,12);if(t.length===0)return"";if(t.length===1)return`${t[0]}*`;let i=`"${t.join(" ")}"`,n=t.map(r=>`${r}*`).join(" OR ");return`${i} OR ${n}`}};var j=class s extends E{static HTTP_METHOD_EXPORTS=new Set(["GET","POST","PUT","PATCH","DELETE","HEAD","OPTIONS"]);findByNameAndFile(e,t){return this.all("SELECT * FROM exports WHERE file_path = ? AND name = ?",t,e)}findByNameGlobal(e){return this.all("SELECT * FROM exports WHERE name = ?",e)}findAtLine(e,t){return this.get(`
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WHERE file_path = ? AND start_line <= ? AND end_line >= ?
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ORDER BY (end_line - start_line) ASC -- Get innermost symbol
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@@ -187,7 +187,7 @@ var ot=Object.defineProperty;var P=(s,e)=>()=>(s&&(e=s(s=0)),e);var at=(s,e)=>{f
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WHERE lower(name) LIKE ?
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LIMIT ?
|
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-
`,`%${e.toLowerCase()}%`,t)}getAllNames(e=5e3){return this.all("SELECT DISTINCT name FROM exports WHERE parent_id IS NULL LIMIT ?",e).map(i=>i.name)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM exports WHERE file_path = ?",e)?.count||0}findDeadExports(e={}){let{limit:t=50,includeTests:i=!1,includeMigrations:n=!1,includeFixtures:r=!1,excludePatterns:c=[],confidenceThreshold:l="all"}=e,a=[];i||(a.push("e.file_path NOT LIKE '%/test/%'"),a.push("e.file_path NOT LIKE '%/tests/%'"),a.push("e.file_path NOT LIKE '%/__tests__/%'"),a.push("e.file_path NOT LIKE '%.spec.%'"),a.push("e.file_path NOT LIKE '%.test.%'")),n||(a.push("e.file_path NOT LIKE '%/migrations/%'"),a.push("e.file_path NOT LIKE '%/migration/%'"),a.push("e.file_path NOT LIKE '%Migration.%'")),r||(a.push("e.file_path NOT LIKE '%/__fixtures__/%'"),a.push("e.file_path NOT LIKE '%/__mocks__/%'"),a.push("e.file_path NOT LIKE '%/fixtures/%'"),a.push("e.file_path NOT LIKE '%/mocks/%'"),a.push("e.file_path NOT LIKE '%.fixture.%'"),a.push("e.file_path NOT LIKE '%.mock.%'"));for(let
|
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+
`,`%${e.toLowerCase()}%`,t)}getAllNames(e=5e3){return this.all("SELECT DISTINCT name FROM exports WHERE parent_id IS NULL LIMIT ?",e).map(i=>i.name)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM exports WHERE file_path = ?",e)?.count||0}findDeadExports(e={}){let{limit:t=50,includeTests:i=!1,includeMigrations:n=!1,includeFixtures:r=!1,excludePatterns:c=[],confidenceThreshold:l="all"}=e,a=[];i||(a.push("e.file_path NOT LIKE '%/test/%'"),a.push("e.file_path NOT LIKE '%/tests/%'"),a.push("e.file_path NOT LIKE '%/__tests__/%'"),a.push("e.file_path NOT LIKE '%.spec.%'"),a.push("e.file_path NOT LIKE '%.test.%'")),n||(a.push("e.file_path NOT LIKE '%/migrations/%'"),a.push("e.file_path NOT LIKE '%/migration/%'"),a.push("e.file_path NOT LIKE '%Migration.%'")),r||(a.push("e.file_path NOT LIKE '%/__fixtures__/%'"),a.push("e.file_path NOT LIKE '%/__mocks__/%'"),a.push("e.file_path NOT LIKE '%/fixtures/%'"),a.push("e.file_path NOT LIKE '%/mocks/%'"),a.push("e.file_path NOT LIKE '%.fixture.%'"),a.push("e.file_path NOT LIKE '%.mock.%'"));for(let g of c){let T=g.replace(/\*\*/g,"%").replace(/\*/g,"%").replace(/\?/g,"_");a.push(`e.file_path NOT LIKE '${T}'`)}let o=a.length>0?`AND ${a.join(" AND ")}`:"",p=this.all(`
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SELECT e.name, e.kind, e.file_path, e.start_line
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FROM exports e
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WHERE e.kind IN (
|
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@@ -208,7 +208,7 @@ var ot=Object.defineProperty;var P=(s,e)=>()=>(s&&(e=s(s=0)),e);var at=(s,e)=>{f
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AND NOT EXISTS (SELECT 1 FROM imports i WHERE i.resolved_path = e.file_path AND i.imported_symbols LIKE '%*%')
|
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ORDER BY e.file_path, e.start_line
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LIMIT ?
|
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`,t*2).filter(
|
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`,t*2).filter(g=>!this.isFrameworkEntrypointExport(g)).map(g=>{let{confidence:T,reason:N}=this.scoreDeadExportConfidence(g);return{...g,confidence:T,reason:N}}),y=p;return l==="high"?y=p.filter(g=>g.confidence==="high"):l==="medium"&&(y=p.filter(g=>g.confidence==="high"||g.confidence==="medium")),y.slice(0,t)}scoreDeadExportConfidence(e){let t=e.file_path.toLowerCase(),i=e.name;return t.includes("/index.")||t.endsWith("index.ts")||t.endsWith("index.js")?{confidence:"low",reason:"Barrel/index file - likely re-export"}:e.kind==="TsInterfaceDeclaration"||e.kind==="TsTypeAliasDeclaration"?{confidence:"medium",reason:"Type definition - may be used externally"}:t.includes("/entry/")||t.includes("/bin/")||t.includes("main.")||t.includes("server.")||t.includes("cli.")?{confidence:"medium",reason:"Entry point - may be invoked externally"}:(t.includes("/components/")||t.endsWith(".tsx")||t.endsWith(".jsx"))&&/^[A-Z][A-Za-z0-9_]*$/.test(i)?{confidence:"medium",reason:"Component export - may be used by runtime composition"}:(t.includes("/contexts/")||t.includes("/context/"))&&(/Provider$/.test(i)||i.startsWith("use"))?{confidence:"medium",reason:"Context/provider export - may be wired dynamically"}:i.startsWith("create")||i.endsWith("Factory")||i.endsWith("Builder")?{confidence:"medium",reason:"Factory/builder pattern - may be used dynamically"}:i.startsWith("use")&&i.length>3?{confidence:"medium",reason:"Hook pattern - may be used in components"}:{confidence:"high",reason:"No detected usage"}}isFrameworkEntrypointExport(e){let i=e.file_path.toLowerCase().replace(/\\/g,"/"),n=e.name;return!!(/(^|\/)(src\/)?app\/.*\/route\.(t|j)sx?$/.test(i)&&s.HTTP_METHOD_EXPORTS.has(n)||/(^|\/)(src\/)?app\/.*\/(page|layout|loading|error|not-found|default|template)\.(t|j)sx?$/.test(i)||/(^|\/)(src\/)?middleware\.(t|j)sx?$/.test(i)||i.includes("/routes/")&&["loader","action","meta","headers"].includes(n))}getGravityMap(e=[],t){let i={},n=`
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`,r=[];t&&r.push(t);let c=this.all(n,...r);for(let o of c){i[o.symbol_id]||(i[o.symbol_id]={score:1,reasons:[]});let u=o.status==="in-progress"||o.status==="verifying"?1:.5;i[o.symbol_id].score+=u;let
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`,r=[];t&&r.push(t);let c=this.all(n,...r);for(let o of c){i[o.symbol_id]||(i[o.symbol_id]={score:1,reasons:[]});let u=o.status==="in-progress"||o.status==="verifying"?1:.5;i[o.symbol_id].score+=u;let m=o.status==="in-progress"||o.status==="verifying"?"Working Set":"Lineage Bleed";i[o.symbol_id].reasons.push(`${m}: ${o.mission_name}`)}let l=Math.floor(Date.now()/1e3)-86400,a=this.all(`
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`,l);for(let o of a){i[o.symbol_id]||(i[o.symbol_id]={score:1,reasons:[]});let u=o.mission_id?e.includes(o.mission_id):!1,
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`,l);for(let o of a){i[o.symbol_id]||(i[o.symbol_id]={score:1,reasons:[]});let u=o.mission_id?e.includes(o.mission_id):!1,m=u?.1:.2;i[o.symbol_id].score<5&&(i[o.symbol_id].score+=m);let p=u?`Lineage Intent: ${o.type}`:`Recent Intent: ${o.type}`;!i[o.symbol_id].reasons.includes(p)&&i[o.symbol_id].reasons.length<5&&i[o.symbol_id].reasons.push(p)}return i}getCount(){return this.get("SELECT COUNT(*) as count FROM exports")?.count||0}getKindDistribution(e=5){return this.all(`
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`,u=[e];r&&(o+=" AND relationship = ?",u.push(r)),o+=" ORDER BY file_path ASC, line_number ASC, source_symbol_name ASC LIMIT ?",u.push(l),a.push(...this.all(o,...u))}return a.slice(0,l)}findTypeGraphEdgesBySymbolId(e,t={}){let i=this.findById(e);return i?this.findTypeGraphEdges(i.name,{...t,filePath:i.file_path}):[]}};var
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`,u=[e];r&&(o+=" AND relationship = ?",u.push(r)),o+=" ORDER BY file_path ASC, line_number ASC, source_symbol_name ASC LIMIT ?",u.push(l),a.push(...this.all(o,...u))}return a.slice(0,l)}findTypeGraphEdgesBySymbolId(e,t={}){let i=this.findById(e);return i?this.findTypeGraphEdges(i.name,{...t,filePath:i.file_path}):[]}};var Ie=`
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`;var q=class extends E{findByFile(e){return this.all("SELECT * FROM imports WHERE file_path = ?",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM imports WHERE file_path IN (${t}) ORDER BY file_path`,...e)}getAllResolved(){return this.all(`
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`,...e,`%${t}%`)?.count||0}findImpactDependents(e,t,i){return this.all(
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`,...e,`%${t}%`)?.count||0}findImpactDependents(e,t,i){return this.all(Ie,e,t,i,t)}getCount(){return this.get("SELECT COUNT(*) as count FROM imports")?.count||0}};var V=class extends E{findById(e){return this.get("SELECT * FROM missions WHERE id = ?",e)}findByIds(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM missions WHERE id IN (${t})`,...e)}findActive(e){let t="SELECT * FROM missions WHERE status IN ('in-progress', 'planned', 'verifying')",i=[];return e&&(t+=" AND git_branch = ?",i.push(e)),t+=` ORDER BY
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`),n=i?.avg_duration!=null?Math.round(i.avg_duration):null,r=Math.floor(Date.now()/1e3)-168*3600,c=Math.floor(Date.now()/1e3)-720*3600,l=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",r),a=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",c),o=l?.n??0,u=a?.n??0,
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`),n=i?.avg_duration!=null?Math.round(i.avg_duration):null,r=Math.floor(Date.now()/1e3)-168*3600,c=Math.floor(Date.now()/1e3)-720*3600,l=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",r),a=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",c),o=l?.n??0,u=a?.n??0,m=`${o} completed in last 7 days, ${u} in last 30 days.`;if(n!=null){let p=Math.round(n/60);m+=` Avg mission duration: ${p} min.`}return{completionRate:t,averageDurationSeconds:n,completedLast7Days:o,completedLast30Days:u,velocityNote:m}}suspendByBranch(e){return this.run(`UPDATE missions
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WHERE git_branch = ? AND status IN ('in-progress', 'verifying')`,e)}resumeByBranch(e){return this.run(`UPDATE missions
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`,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}addHandoff(e,t){let i=JSON.stringify(t),n=e??0,r=this.insert("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",n,"handoff",t.kind,i),c=[`[handoff:${t.kind}]`,...t.findings.map(l=>l.statement),...t.risks.map(l=>l.description),...t.gaps].filter(Boolean).join(" ");return Promise.resolve().then(()=>(
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`,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}addHandoff(e,t){let i=JSON.stringify(t),n=e??0,r=this.insert("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",n,"handoff",t.kind,i),c=[`[handoff:${t.kind}]`,...t.findings.map(l=>l.statement),...t.risks.map(l=>l.description),...t.gaps].filter(Boolean).join(" ");return Promise.resolve().then(()=>(L(),I)).then(({generateEmbedding:l})=>l(c)).then(l=>{l&&this.run("UPDATE mission_artifacts SET embedding = ? WHERE id = ?",JSON.stringify(l),r)}).catch(()=>{}),r}getHandoffs(e,t,i=20){let n=["type = 'handoff'"],r=[];e!==void 0&&(n.push("mission_id = ?"),r.push(e??0)),t&&(n.push("identifier = ?"),r.push(t));let c=`SELECT * FROM mission_artifacts WHERE ${n.join(" AND ")} ORDER BY created_at DESC LIMIT ?`;return r.push(i),this.all(c,...r)}async findSemanticHandoffs(e,t=5){let{cosineSimilarity:i}=await Promise.resolve().then(()=>(L(),I)),n=this.all("SELECT * FROM mission_artifacts WHERE type = 'handoff' AND embedding IS NOT NULL"),r=[];for(let c of n)try{let l=JSON.parse(c.embedding),a=i(e,l);a>.3&&r.push({...c,similarity:a})}catch{}return r.sort((c,l)=>l.similarity-c.similarity).slice(0,t)}};M();var J=class s extends E{findByMission(e,t=50){return this.all(`
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id, mission_id, symbol_id, file_path, type, content, confidence,
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symbol_name, signature, commit_sha, is_crystallized, crystal_id,
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@@ -452,7 +452,7 @@ ORDER BY dc.depth, dc.consumer_path;
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`,e)}create(e){let t=this.insert(`
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VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
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`,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha);return s.EMBEDDABLE_TYPES.has(e.type)&&this.generateAndStoreEmbedding(Number(t),e).catch(i=>{d.debug({err:i,intentLogId:t},"Failed to generate intent log embedding")}),t}static EMBEDDABLE_TYPES=new Set(["decision","discovery","fix","blocker","note","heritage","crystal"]);static buildEmbeddingText(e){let t=[`[${e.type}]`];return e.symbol_name&&t.push(`symbol: ${e.symbol_name}`),e.file_path&&t.push(`file: ${e.file_path.split("/").pop()}`),t.push(e.content),t.join(" ")}async generateAndStoreEmbedding(e,t){let{generateEmbedding:i}=await Promise.resolve().then(()=>(
|
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+
`,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha);return s.EMBEDDABLE_TYPES.has(e.type)&&this.generateAndStoreEmbedding(Number(t),e).catch(i=>{d.debug({err:i,intentLogId:t},"Failed to generate intent log embedding")}),t}static EMBEDDABLE_TYPES=new Set(["decision","discovery","fix","blocker","note","heritage","crystal"]);static buildEmbeddingText(e){let t=[`[${e.type}]`];return e.symbol_name&&t.push(`symbol: ${e.symbol_name}`),e.file_path&&t.push(`file: ${e.file_path.split("/").pop()}`),t.push(e.content),t.join(" ")}async generateAndStoreEmbedding(e,t){let{generateEmbedding:i}=await Promise.resolve().then(()=>(L(),I)),n=s.buildEmbeddingText(t),r=await i(n);r&&this.run("UPDATE intent_logs SET embedding = ? WHERE id = ?",JSON.stringify(r),e)}findWithEmbeddings(){return this.all("SELECT * FROM intent_logs WHERE embedding IS NOT NULL AND type NOT IN ('system', 'lapsed')")}async findSemanticMatches(e,t,i){let{cosineSimilarity:n}=await Promise.resolve().then(()=>(L(),I)),r=this.findWithEmbeddings();if(r.length>5e3)return d.warn({count:r.length},"Intent log count exceeds brute-force vector scan limit (5000). Skipping semantic recall."),[];let c=[];for(let l of r)if(!(i&&l.symbol_id===i))try{let a=JSON.parse(l.embedding),o=n(e,a);o>.25&&c.push({id:l.id,mission_id:l.mission_id,type:l.type,content:l.content,symbol_name:l.symbol_name,file_path:l.file_path,similarity:o,created_at:l.created_at})}catch{}return c.sort((l,a)=>a.similarity-l.similarity).slice(0,t)}delete(e){this.run("DELETE FROM intent_logs WHERE id = ?",e)}update(e,t){let i=Object.keys(t);if(i.length===0)return;let n=i.map(c=>`${c} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE intent_logs SET ${n} WHERE id = ?`,...r)}findRepairableOrphans(){return this.all(`
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@@ -515,8 +515,8 @@ ORDER BY dc.depth, dc.consumer_path;
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WHERE mission_id = ? AND is_crystallized = 0 AND type NOT IN ('adr', 'system', 'crystal', 'lapsed')
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ORDER BY created_at DESC LIMIT ?`,e,i.created_at,t-1);return[i,...n]}return this.findByMission(e,t)}async findSemanticTheme(e,t,i=200){let{cosineSimilarity:n}=await Promise.resolve().then(()=>(
|
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VALUES (NULL, 'crystal', ?, 1.0, 0, NULL, NULL, NULL, NULL, NULL)`,i);if(t.length>0){let r=t.map(()=>"?").join(",");this.run(`UPDATE intent_logs SET is_crystallized = 1, crystal_id = ? WHERE id IN (${r})`,n,...t)}return n})}async backfillEmbeddings(e=64,t){let{generateEmbeddingsBatch:i}=await Promise.resolve().then(()=>(
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ORDER BY created_at DESC LIMIT ?`,e,i.created_at,t-1);return[i,...n]}return this.findByMission(e,t)}async findSemanticTheme(e,t,i=200){let{cosineSimilarity:n}=await Promise.resolve().then(()=>(L(),I)),r=this.findWithEmbeddings(),c=[];for(let l of r)if(s.EMBEDDABLE_TYPES.has(l.type)&&!(t&&l.mission_id!==null&&!t.includes(l.mission_id)))try{let a=JSON.parse(l.embedding),o=n(e,a);o>.35&&c.push({...l,_similarity:o})}catch{}return c.sort((l,a)=>a._similarity-l._similarity).slice(0,i).map(({_similarity:l,...a})=>a)}crystallizeTheme(e,t,i){return this.transaction(()=>{let n=this.insert(`INSERT INTO intent_logs (mission_id, type, content, confidence, is_crystallized, symbol_id, file_path, symbol_name, signature, commit_sha)
|
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+
VALUES (NULL, 'crystal', ?, 1.0, 0, NULL, NULL, NULL, NULL, NULL)`,i);if(t.length>0){let r=t.map(()=>"?").join(",");this.run(`UPDATE intent_logs SET is_crystallized = 1, crystal_id = ? WHERE id IN (${r})`,n,...t)}return n})}async backfillEmbeddings(e=64,t){let{generateEmbeddingsBatch:i}=await Promise.resolve().then(()=>(L(),I)),n=[...s.EMBEDDABLE_TYPES].map(u=>`'${u}'`).join(","),r=this.all(`SELECT * FROM intent_logs WHERE embedding IS NULL AND type IN (${n})`);if(r.length===0)return 0;let c=r.map(u=>s.buildEmbeddingText(u)),l=await i(c,e,t),a=this.db.prepare("UPDATE intent_logs SET embedding = ? WHERE id = ?"),o=0;return this.transaction(()=>{for(let u=0;u<r.length;u++)l[u]&&(a.run(JSON.stringify(l[u]),r[u].id),o++)}),d.info({total:r.length,embedded:o},"Intent log embedding backfill complete"),o}};var Q=class extends E{findByKey(e,t=20){return this.all(`
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FROM configs
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WHERE key LIKE ? OR value LIKE ?
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@@ -526,20 +526,73 @@ ORDER BY dc.depth, dc.consumer_path;
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|
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LIMIT ?
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`,e,t)}};var
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WHERE query LIKE ? ORDER BY created_at DESC LIMIT ?`,`${e}%`,t):this.findRecent(t)}pruneIfNeeded(){(this.get("SELECT COUNT(*) as count FROM search_history")?.count??0)
|
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+
`,e,t)}};var $e=500,Z=class extends E{record(e,t,i=null){this.run("INSERT INTO search_history (query, mode, branch) VALUES (?, ?, ?)",e,t,i),this.pruneIfNeeded()}findRecent(e=20){return this.all("SELECT id, query, mode, branch, created_at FROM search_history ORDER BY created_at DESC LIMIT ?",e)}findRecentByQueryPrefix(e,t=10){return e.trim()?this.all(`SELECT id, query, mode, branch, created_at FROM search_history
|
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+
WHERE query LIKE ? ORDER BY created_at DESC LIMIT ?`,`${e}%`,t):this.findRecent(t)}pruneIfNeeded(){(this.get("SELECT COUNT(*) as count FROM search_history")?.count??0)<=$e||this.run(`DELETE FROM search_history WHERE id NOT IN (
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SELECT id FROM search_history ORDER BY created_at DESC LIMIT ?
|
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-
)
|
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+
)`,$e)}};var ee=class extends E{getSection(e){return this.get("SELECT section, data, updated_at FROM hologram_snapshot WHERE section = ?",e)}getAllSections(){return this.all("SELECT section, data, updated_at FROM hologram_snapshot ORDER BY section")}upsertSection(e,t){this.run(`
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VALUES (?, ?, unixepoch())
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ON CONFLICT(section) DO UPDATE SET
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data = excluded.data,
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updated_at = excluded.updated_at
|
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`,e,t)}deleteSection(e){this.run("DELETE FROM hologram_snapshot WHERE section = ?",e)}deleteAll(){this.run("DELETE FROM hologram_snapshot")}hasSection(e){return(this.get("SELECT COUNT(*) as count FROM hologram_snapshot WHERE section = ?",e)?.count??0)>0}};var te=class
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-
|
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|
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|
+
`,e,t)}deleteSection(e){this.run("DELETE FROM hologram_snapshot WHERE section = ?",e)}deleteAll(){this.run("DELETE FROM hologram_snapshot")}hasSection(e){return(this.get("SELECT COUNT(*) as count FROM hologram_snapshot WHERE section = ?",e)?.count??0)>0}};var te=class extends E{claimFile(e,t){try{this.run(`
|
|
539
|
+
INSERT INTO file_claims (file_path, mission_id, claimed_at, updated_at)
|
|
540
|
+
VALUES (?, ?, unixepoch(), unixepoch())
|
|
541
|
+
`,e,t);let i=this.getClaim(e);if(!i)throw new Error(`Failed to hydrate claim after insert for file ${e}`);return{status:"claimed",claim:i}}catch{let i=this.getClaim(e);if(!i)throw new Error(`Failed to read existing claim for file ${e}`);return i.mission_id===t?(this.run("UPDATE file_claims SET updated_at = unixepoch() WHERE file_path = ?",e),{status:"already_claimed",claim:this.getClaim(e)??i}):{status:"conflict",claim:i}}}releaseFile(e,t){let i=this.getClaim(e);return i?t!==void 0&&i.mission_id!==t?{released:!1,reason:"not_owner",claim:i}:(this.run("DELETE FROM file_claims WHERE file_path = ?",e),{released:!0}):{released:!1,reason:"not_found"}}releaseAllForMission(e){return this.run("DELETE FROM file_claims WHERE mission_id = ?",e)}getClaim(e){return this.get(`
|
|
542
|
+
SELECT
|
|
543
|
+
fc.file_path,
|
|
544
|
+
fc.mission_id,
|
|
545
|
+
fc.claimed_at,
|
|
546
|
+
fc.updated_at,
|
|
547
|
+
m.name AS mission_name,
|
|
548
|
+
m.status AS mission_status,
|
|
549
|
+
m.git_branch AS mission_branch
|
|
550
|
+
FROM file_claims fc
|
|
551
|
+
LEFT JOIN missions m ON m.id = fc.mission_id
|
|
552
|
+
WHERE fc.file_path = ?
|
|
553
|
+
`,e)}getClaimsForMission(e){return this.all(`
|
|
554
|
+
SELECT
|
|
555
|
+
fc.file_path,
|
|
556
|
+
fc.mission_id,
|
|
557
|
+
fc.claimed_at,
|
|
558
|
+
fc.updated_at,
|
|
559
|
+
m.name AS mission_name,
|
|
560
|
+
m.status AS mission_status,
|
|
561
|
+
m.git_branch AS mission_branch
|
|
562
|
+
FROM file_claims fc
|
|
563
|
+
LEFT JOIN missions m ON m.id = fc.mission_id
|
|
564
|
+
WHERE fc.mission_id = ?
|
|
565
|
+
ORDER BY fc.file_path ASC
|
|
566
|
+
`,e)}listClaims(){return this.all(`
|
|
567
|
+
SELECT
|
|
568
|
+
fc.file_path,
|
|
569
|
+
fc.mission_id,
|
|
570
|
+
fc.claimed_at,
|
|
571
|
+
fc.updated_at,
|
|
572
|
+
m.name AS mission_name,
|
|
573
|
+
m.status AS mission_status,
|
|
574
|
+
m.git_branch AS mission_branch
|
|
575
|
+
FROM file_claims fc
|
|
576
|
+
LEFT JOIN missions m ON m.id = fc.mission_id
|
|
577
|
+
ORDER BY fc.updated_at DESC, fc.file_path ASC
|
|
578
|
+
`)}getClaimsByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`
|
|
579
|
+
SELECT
|
|
580
|
+
fc.file_path,
|
|
581
|
+
fc.mission_id,
|
|
582
|
+
fc.claimed_at,
|
|
583
|
+
fc.updated_at,
|
|
584
|
+
m.name AS mission_name,
|
|
585
|
+
m.status AS mission_status,
|
|
586
|
+
m.git_branch AS mission_branch
|
|
587
|
+
FROM file_claims fc
|
|
588
|
+
LEFT JOIN missions m ON m.id = fc.mission_id
|
|
589
|
+
WHERE fc.file_path IN (${t})
|
|
590
|
+
ORDER BY fc.file_path ASC
|
|
591
|
+
`,...e)}};var ie=class{static repositoryCache=new Map;static getInstance(e){let t=this.repositoryCache.get(e);if(t){let r=F(e),c=t.files?.database,a=!t.intentLogs||!t.searchHistory||!t.missions||!t.hologram||!t.claims;if(c===r&&r.open&&!a)return t;this.repositoryCache.delete(e)}let i=F(e),n={files:new K(i),exports:new j(i),imports:new q(i),missions:new V(i),intentLogs:new J(i),configs:new Q(i),content:new X(i),searchHistory:new Z(i),hologram:new ee(i),claims:new te(i)};return this.repositoryCache.set(e,n),n}static closeInstance(e){this.repositoryCache.delete(e),Se(e)}static clearCache(e){this.repositoryCache.delete(e)}};L();var ze=new Set(["FunctionDeclaration","ClassDeclaration","TsInterfaceDeclaration","TsTypeAliasDeclaration","TsEnumDeclaration","HTTP Route","Socket Event","Pub/Sub Topic","function","class","interface","type","enum"]),Ye={"HTTP Route":0,"Socket Event":0,"Pub/Sub Topic":0,TsInterfaceDeclaration:1,TsTypeAliasDeclaration:1,TsEnumDeclaration:1,interface:1,type:1,enum:1,FunctionDeclaration:2,function:2,ClassDeclaration:3,class:3};function Ke(s,e,t=[]){let i=t.length>0?`${t.join(" > ")} > ${e.name}`:String(e.name),n=[`Symbol: ${e.name}`,`Kind: ${e.kind??"Unknown"}`,`Scope: ${i}`,`File: ${s}`];return e.signature&&n.push(`Signature: ${String(e.signature)}`),e.doc&&n.push(`Doc: ${String(e.doc)}`),n.join(`
|
|
592
|
+
`)}function je(s){return s.map(()=>"?").join(",")}var Gt=me.constants.priority.PRIORITY_LOWEST??me.constants.priority.PRIORITY_LOW,ne=process.argv[2];ne||(process.stderr.write(`Ember: repoPath argument missing
|
|
593
|
+
`),process.exit(1));try{me.setPriority(Gt)}catch{}function w(s,e){s.transaction(()=>{let t=s.prepare("INSERT OR REPLACE INTO ember_state (key, value, updated_at) VALUES (?, ?, unixepoch())");for(let[i,n]of Object.entries(e))t.run(i,n??null)})()}var qe=100,re=[...ze],Ge=je(re),Vt=re.map(s=>`WHEN '${s.replace(/'/g,"''")}' THEN ${Ye[s]??2}`).join(" ").trim(),se=x({numWorkers:2}),b;async function Jt(){b=F(ne),w(b,{status:"running",pid:String(process.pid),started_at:String(Date.now()),repo_path:ne}),await se.initialize();let e=b.prepare(`SELECT COUNT(*) as c FROM exports WHERE embedding IS NULL AND kind IN (${Ge})`).get(...re).c,t=0;w(b,{progress:`0/${e}`});let i=b.prepare(`SELECT id, file_path, name, kind, signature, doc, start_line, end_line
|
|
541
594
|
FROM exports
|
|
542
|
-
WHERE embedding IS NULL AND kind IN (${
|
|
543
|
-
ORDER BY CASE kind ${
|
|
544
|
-
LIMIT ${qe}`),n=
|
|
545
|
-
`);try{
|
|
595
|
+
WHERE embedding IS NULL AND kind IN (${Ge})
|
|
596
|
+
ORDER BY CASE kind ${Vt} END
|
|
597
|
+
LIMIT ${qe}`),n=b.prepare("UPDATE exports SET embedding = ? WHERE id = ?");for(;;){let r=i.all(...re);if(r.length===0)break;let c=r.map(a=>Ke(a.file_path,a)),l=await se.generateEmbeddings(c,qe);b.transaction(()=>{for(let a=0;a<r.length;a++){let o=l[a];o&&n.run(JSON.stringify(o),r[a].id)}})(),t+=r.length,w(b,{progress:`${t}/${e}`})}try{await ie.getInstance(ne).intentLogs.backfillEmbeddings(64)}catch{}w(b,{status:"done",progress:`${t}/${e}`}),await se.shutdown(),process.exit(0)}async function Ve(){try{b&&w(b,{status:"idle"}),await se.shutdown()}catch{}process.exit(0)}process.on("SIGTERM",()=>{Ve()});process.on("SIGINT",()=>{Ve()});Jt().catch(s=>{process.stderr.write(`Ember error: ${s instanceof Error?s.message:String(s)}
|
|
598
|
+
`);try{b&&w(b,{status:"error"})}catch{}process.exit(1)});
|