@precisionutilityguild/liquid-shadow 1.0.7 → 1.0.9

package/dist/entry/cli/index.js

@@ -1,17 +1,17 @@
 #!/usr/bin/env node
-var Oc=Object.create;var Gi=Object.defineProperty;var Fc=Object.getOwnPropertyDescriptor;var Wc=Object.getOwnPropertyNames;var Hc=Object.getPrototypeOf,zc=Object.prototype.hasOwnProperty;var Uc=(s=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(s,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):s)(function(s){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+s+'" is not supported')});var Z=(s,e)=>()=>(s&&(e=s(s=0)),e);var jc=(s,e)=>()=>(e||s((e={exports:{}}).exports,e),e.exports),qi=(s,e)=>{for(var t in e)Gi(s,t,{get:e[t],enumerable:!0})},Bc=(s,e,t,n)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of Wc(e))!zc.call(s,i)&&i!==t&&Gi(s,i,{get:()=>e[i],enumerable:!(n=Fc(e,i))||n.enumerable});return s};var Gc=(s,e,t)=>(t=s!=null?Oc(Hc(s)):{},Bc(e||!s||!s.__esModule?Gi(t,"default",{value:s,enumerable:!0}):t,s));import qc from"pino";var Vc,Jc,S,q=Z(()=>{"use strict";Vc={10:"TRACE",20:"DEBUG",30:"INFO",40:"WARN",50:"ERROR",60:"FATAL"},Jc=qc({level:process.env.LOG_LEVEL||"warn",base:{service:"liquid-shadow"},formatters:{level(s,e){return{level:s,severity:Vc[e]??"INFO"}}},transport:{target:"pino-pretty",options:{colorize:!0,translateTime:"HH:MM:ss",destination:2,levelKey:"severity",messageKey:"message"}}}),S=Jc});import Et from"fs";import xn from"path";import{fileURLToPath as Qc}from"url";function el(){let s=Zc;if(Et.readdirSync(s).some(n=>n.match(/^\d{3}_.*\.sql$/)))return s;let t=xn.resolve(s,"../../data/migrations");return Et.existsSync(t)&&Et.readdirSync(t).some(n=>n.match(/^\d{3}_.*\.sql$/))?t:s}function tl(s){s.exec(`
+var sl=Object.create;var as=Object.defineProperty;var rl=Object.getOwnPropertyDescriptor;var ol=Object.getOwnPropertyNames;var al=Object.getPrototypeOf,cl=Object.prototype.hasOwnProperty;var ll=(s=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(s,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):s)(function(s){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+s+'" is not supported')});var ee=(s,e)=>()=>(s&&(e=s(s=0)),e);var pl=(s,e)=>()=>(e||s((e={exports:{}}).exports,e),e.exports),cs=(s,e)=>{for(var t in e)as(s,t,{get:e[t],enumerable:!0})},ul=(s,e,t,n)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of ol(e))!cl.call(s,i)&&i!==t&&as(s,i,{get:()=>e[i],enumerable:!(n=rl(e,i))||n.enumerable});return s};var dl=(s,e,t)=>(t=s!=null?sl(al(s)):{},ul(e||!s||!s.__esModule?as(t,"default",{value:s,enumerable:!0}):t,s));import ml from"pino";var hl,fl,w,G=ee(()=>{"use strict";hl={10:"TRACE",20:"DEBUG",30:"INFO",40:"WARN",50:"ERROR",60:"FATAL"},fl=ml({level:process.env.LOG_LEVEL||"warn",base:{service:"liquid-shadow"},formatters:{level(s,e){return{level:s,severity:hl[e]??"INFO"}}},transport:{target:"pino-pretty",options:{colorize:!0,translateTime:"HH:MM:ss",destination:2,levelKey:"severity",messageKey:"message"}}}),w=fl});import Pt from"fs";import Nn from"path";import{fileURLToPath as bl}from"url";function Sl(){let s=El;if(Pt.readdirSync(s).some(n=>n.match(/^\d{3}_.*\.sql$/)))return s;let t=Nn.resolve(s,"../../data/migrations");return Pt.existsSync(t)&&Pt.readdirSync(t).some(n=>n.match(/^\d{3}_.*\.sql$/))?t:s}function wl(s){s.exec(`
     CREATE TABLE IF NOT EXISTS schema_migrations (
       version    INTEGER PRIMARY KEY,
       name       TEXT    NOT NULL,
       applied_at REAL    DEFAULT (unixepoch())
     );
-  `)}function nl(s){tl(s);let e=s.prepare("SELECT version FROM schema_migrations ORDER BY version").all();return new Set(e.map(t=>t.version))}function il(s){return Et.readdirSync(s).filter(t=>t.match(/^\d{3}_.*\.sql$/)&&!t.startsWith("000_")).sort().map(t=>{let n=t.match(/^(\d{3})_(.+)\.sql$/),i=parseInt(n[1],10),r=n[2],a=Et.readFileSync(xn.join(s,t),"utf-8").split(/^-- DOWN$/m);return{version:i,name:r,up:a[0].trim(),down:a[1]?.trim()}})}function sl(s,e){st.info({version:e.version,name:e.name},"Applying migration"),s.transaction(()=>{s.exec(e.up),s.prepare("INSERT INTO schema_migrations (version, name) VALUES (?, ?)").run(e.version,e.name)})(),st.info({version:e.version},"Migration applied successfully")}function rl(s,e,t){let n=xn.join(e,"000_baseline.sql");if(!Et.existsSync(n)){st.warn("000_baseline.sql not found \u2014 falling back to incremental migrations");return}st.info("Fresh database detected \u2014 applying consolidated baseline schema");let i=Et.readFileSync(n,"utf-8");s.transaction(()=>{s.exec(i);let r=s.prepare("INSERT OR IGNORE INTO schema_migrations (version, name) VALUES (?, ?)");for(let o of t)r.run(o.version,o.name)})(),st.info({stamped:t.length},"Baseline applied \u2014 incremental migrations stamped")}function tr(s){let e=nl(s),t=el(),n=il(t);if(e.size===0){rl(s,t,n);return}let i=n.filter(r=>!e.has(r.version));if(i.length===0){st.debug("No pending migrations");return}st.info({count:i.length},"Running pending migrations");for(let r of i)sl(s,r);st.info("All migrations complete")}var st,Xc,Zc,nr=Z(()=>{"use strict";q();st=S.child({module:"migrations"}),Xc=Qc(import.meta.url),Zc=xn.dirname(Xc)});import ol from"better-sqlite3";import vn from"path";import Ji from"fs";import ir from"crypto";import al from"os";function Rn(s){let e=al.homedir(),t=vn.join(e,".mcp-liquid-shadow"),n=vn.join(t,"dbs");Ji.existsSync(n)||Ji.mkdirSync(n,{recursive:!0});let i=ir.createHash("sha256").update(s).digest("hex").substring(0,12),o=`${vn.basename(s).replace(/[^a-zA-Z0-9-_]/g,"_")}_${i}.db`;return vn.join(n,o)}function cl(s,e){let t=e||Rn(s);Qe.debug({repoPath:s,dbPath:t},"Initializing database");let n=new ol(t);return n.pragma("journal_mode = WAL"),n.pragma("busy_timeout = 5000"),tr(n),Tn.set(s,t),rt.set(t,n),Qe.debug({repoPath:s,dbPath:t},"Database initialized successfully"),n}function Nt(s){return ir.createHash("sha256").update(s,"utf8").digest("hex")}function sr(s,e){return e?Nt(s)!==e:!0}function Te(s){let e=Tn.get(s)||Rn(s),t=rt.get(e);if(t){if(t.open)return t;rt.delete(e)}let n=cl(s);return rt.set(e,n),n}function Xe(s){let e=Rn(s);if(!Ji.existsSync(e))return!1;try{let t=Te(s);return t.prepare(`
+  `)}function xl(s){wl(s);let e=s.prepare("SELECT version FROM schema_migrations ORDER BY version").all();return new Set(e.map(t=>t.version))}function vl(s){return Pt.readdirSync(s).filter(t=>t.match(/^\d{3}_.*\.sql$/)&&!t.startsWith("000_")).sort().map(t=>{let n=t.match(/^(\d{3})_(.+)\.sql$/),i=parseInt(n[1],10),r=n[2],a=Pt.readFileSync(Nn.join(s,t),"utf-8").split(/^-- DOWN$/m);return{version:i,name:r,up:a[0].trim(),down:a[1]?.trim()}})}function Rl(s,e){bt.info({version:e.version,name:e.name},"Applying migration"),s.transaction(()=>{s.exec(e.up),s.prepare("INSERT INTO schema_migrations (version, name) VALUES (?, ?)").run(e.version,e.name)})(),bt.info({version:e.version},"Migration applied successfully")}function Tl(s,e,t){let n=Nn.join(e,"000_baseline.sql");if(!Pt.existsSync(n)){bt.warn("000_baseline.sql not found \u2014 falling back to incremental migrations");return}bt.info("Fresh database detected \u2014 applying consolidated baseline schema");let i=Pt.readFileSync(n,"utf-8");s.transaction(()=>{s.exec(i);let r=s.prepare("INSERT OR IGNORE INTO schema_migrations (version, name) VALUES (?, ?)");for(let o of t)r.run(o.version,o.name)})(),bt.info({stamped:t.length},"Baseline applied \u2014 incremental migrations stamped")}function Rr(s){let e=xl(s),t=Sl(),n=vl(t);if(e.size===0){Tl(s,t,n);return}let i=n.filter(r=>!e.has(r.version));if(i.length===0){bt.debug("No pending migrations");return}bt.info({count:i.length},"Running pending migrations");for(let r of i)Rl(s,r);bt.info("All migrations complete")}var bt,_l,El,Tr=ee(()=>{"use strict";G();bt=w.child({module:"migrations"}),_l=bl(import.meta.url),El=Nn.dirname(_l)});import kl from"better-sqlite3";import Dn from"path";import ps from"fs";import kr from"crypto";import Cl from"os";function Fn(s){let e=Cl.homedir(),t=Dn.join(e,".mcp-liquid-shadow"),n=Dn.join(t,"dbs");ps.existsSync(n)||ps.mkdirSync(n,{recursive:!0});let i=kr.createHash("sha256").update(s).digest("hex").substring(0,12),o=`${Dn.basename(s).replace(/[^a-zA-Z0-9-_]/g,"_")}_${i}.db`;return Dn.join(n,o)}function Il(s,e){let t=e||Fn(s);lt.debug({repoPath:s,dbPath:t},"Initializing database");let n=new kl(t);return n.pragma("journal_mode = WAL"),n.pragma("busy_timeout = 5000"),Rr(n),On.set(s,t),_t.set(t,n),lt.debug({repoPath:s,dbPath:t},"Database initialized successfully"),n}function Jt(s){return kr.createHash("sha256").update(s,"utf8").digest("hex")}function Cr(s,e){return e?Jt(s)!==e:!0}function De(s){let e=On.get(s)||Fn(s),t=_t.get(e);if(t){if(t.open)return t;_t.delete(e)}let n=Il(s);return _t.set(e,n),n}function pt(s){let e=Fn(s);if(!ps.existsSync(e))return!1;try{let t=De(s);return t.prepare(`
       SELECT value FROM index_metadata
       WHERE key = 'index_completed'
-    `).get()?.value==="true"?!0:t.prepare("SELECT COUNT(*) as count FROM files").get().count>0}catch(t){return Qe.debug({repoPath:s,error:t},"Error checking index status"),!1}}function Yi(s,e){let t=Te(s),n=t.prepare("INSERT OR REPLACE INTO index_metadata (key, value, updated_at) VALUES (?, ?, unixepoch())");t.transaction(()=>{n.run("index_completed","true"),n.run("last_indexed_at",Date.now().toString()),e&&n.run("last_indexed_commit",e)})(),Qe.debug({repoPath:s,commitSha:e},"Repository marked as indexed")}function nn(s){try{return Te(s).prepare(`
+    `).get()?.value==="true"?!0:t.prepare("SELECT COUNT(*) as count FROM files").get().count>0}catch(t){return lt.debug({repoPath:s,error:t},"Error checking index status"),!1}}function us(s,e){let t=De(s),n=t.prepare("INSERT OR REPLACE INTO index_metadata (key, value, updated_at) VALUES (?, ?, unixepoch())");t.transaction(()=>{n.run("index_completed","true"),n.run("last_indexed_at",Date.now().toString()),e&&n.run("last_indexed_commit",e)})(),lt.debug({repoPath:s,commitSha:e},"Repository marked as indexed")}function fn(s){try{return De(s).prepare(`
       SELECT value FROM index_metadata
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-    `).get()?.value||null}catch(e){return Qe.debug({repoPath:s,error:e},"Error getting last indexed commit"),null}}function kn(s){let e=Tn.get(s)||Rn(s),t=rt.get(e);t&&(t.open&&(Qe.debug({repoPath:s,dbPath:e},"Closing database connection"),t.close()),rt.delete(e)),Tn.delete(s)}function rr(){for(let[s,e]of rt.entries())try{e.open&&(Qe.debug({dbPath:s},"Closing database connection"),e.close())}catch(t){Qe.error({dbPath:s,err:t},"Error closing database execution")}rt.clear()}var Qe,rt,Tn,or,Ze=Z(()=>{"use strict";q();nr();Qe=S.child({module:"db"});rt=new Map,Tn=new Map;process.on("exit",()=>rr());or=s=>{Qe.debug({signal:s},"Received termination signal, closing databases"),rr(),process.exit(0)};process.on("SIGINT",()=>or("SIGINT"));process.on("SIGTERM",()=>or("SIGTERM"))});var ae,Ue=Z(()=>{"use strict";ae=class{db;constructor(e){this.db=e}get database(){return this.db}all(e,...t){return this.db.prepare(e).all(...t)}get(e,...t){return this.db.prepare(e).get(...t)}run(e,...t){return this.db.prepare(e).run(...t).changes}insert(e,...t){return this.db.prepare(e).run(...t).lastInsertRowid}transaction(e){return this.db.transaction(e)()}}});function pl(s,e){if(!s)return!1;let t=s.trim();return!t||ll.has(t.toLowerCase())||e.has(t)?!1:/^[A-Za-z_$][A-Za-z0-9_$.]*$/.test(t)}function ul(s){return s.split(/[,|&]/).map(e=>e.trim()).filter(Boolean)}function dl(s){let e=s.replace(/^[({\[]+/,"").replace(/[)}\]]+$/,"").replace(/^readonly\s+/,"").trim();return e&&e.match(/^([A-Za-z_$][A-Za-z0-9_$.]*)/)?.[1]||null}function ml(s){let e=[],t=0,n="",i=!1;for(let r of s){if(r==="<"&&(t++,t===1)){i=!0,n="";continue}if(r===">"&&(t>0&&t--,t===0&&i)){i=!1,n.trim()&&e.push(n),n="";continue}i&&(n+=r)}return e}function hl(s){let e=new Set;for(let t of s){let n=t.split(",").map(i=>i.trim());for(let i of n){let r=i.match(/^([A-Za-z_$][A-Za-z0-9_$]*)/);r?.[1]&&e.add(r[1])}}return e}function Ki(s,e){let t=[];for(let n of ul(s)){let i=dl(n);i&&pl(i,e)&&t.push(i)}return t}function ar(s){if(!s)return[];let e=s.replace(/\s+/g," ").trim();if(!e)return[];let t=ml(e),n=hl(t),i=[],r=new Set,o=(l,p,u)=>{let d=`${l}:${p}`;r.has(d)||(r.add(d),i.push({relationship:l,targetName:p,...u?{metadata:u}:{}}))},a=e.match(/\bextends\s+(.+?)(?=\bimplements\b|\{|=|$)/);if(a?.[1]){let l=Ki(a[1],n);for(let p of l)o("extends",p,a[1].trim())}let c=e.match(/\bimplements\s+(.+?)(?=\{|=|$)/);if(c?.[1]){let l=Ki(c[1],n);for(let p of l)o("implements",p,c[1].trim())}for(let l of t){let p=/([A-Za-z_$][A-Za-z0-9_$]*)\s+extends\s+([^,>]+)/g,u=null;for(;(u=p.exec(l))!==null;){let d=u[2]?.trim();if(!d)continue;let h=Ki(d,n);for(let m of h)o("constrained_by",m,d)}}return i}var ll,cr=Z(()=>{"use strict";ll=new Set(["any","unknown","never","void","null","undefined","string","number","boolean","symbol","object","bigint","readonly","keyof","infer","extends","implements","class","interface","type","function","new"])});import fl from"path";var Cn,lr=Z(()=>{"use strict";Ue();cr();Cn=class extends ae{findByPath(e){return this.get("SELECT * FROM files WHERE path = ?",e)}findAll(e){let t="SELECT * FROM files ORDER BY path ASC";return e&&(t+=` LIMIT ${e}`),this.all(t)}getAllPaths(){return this.all("SELECT path FROM files").map(t=>t.path)}findInSubPath(e,t){let n=fl.resolve(e,t),i=n.endsWith("/")?n:n+"/";return this.all(`
+    `).get()?.value||null}catch(e){return lt.debug({repoPath:s,error:e},"Error getting last indexed commit"),null}}function Wn(s){let e=On.get(s)||Fn(s),t=_t.get(e);t&&(t.open&&(lt.debug({repoPath:s,dbPath:e},"Closing database connection"),t.close()),_t.delete(e)),On.delete(s)}function Ir(){for(let[s,e]of _t.entries())try{e.open&&(lt.debug({dbPath:s},"Closing database connection"),e.close())}catch(t){lt.error({dbPath:s,err:t},"Error closing database execution")}_t.clear()}var lt,_t,On,Lr,ut=ee(()=>{"use strict";G();Tr();lt=w.child({module:"db"});_t=new Map,On=new Map;process.on("exit",()=>Ir());Lr=s=>{lt.debug({signal:s},"Received termination signal, closing databases"),Ir(),process.exit(0)};process.on("SIGINT",()=>Lr("SIGINT"));process.on("SIGTERM",()=>Lr("SIGTERM"))});var pe,Ge=ee(()=>{"use strict";pe=class{db;constructor(e){this.db=e}get database(){return this.db}all(e,...t){return this.db.prepare(e).all(...t)}get(e,...t){return this.db.prepare(e).get(...t)}run(e,...t){return this.db.prepare(e).run(...t).changes}insert(e,...t){return this.db.prepare(e).run(...t).lastInsertRowid}transaction(e){return this.db.transaction(e)()}}});function Ml(s,e){if(!s)return!1;let t=s.trim();return!t||Ll.has(t.toLowerCase())||e.has(t)?!1:/^[A-Za-z_$][A-Za-z0-9_$.]*$/.test(t)}function Al(s){return s.split(/[,|&]/).map(e=>e.trim()).filter(Boolean)}function $l(s){let e=s.replace(/^[({\[]+/,"").replace(/[)}\]]+$/,"").replace(/^readonly\s+/,"").trim();return e&&e.match(/^([A-Za-z_$][A-Za-z0-9_$.]*)/)?.[1]||null}function Pl(s){let e=[],t=0,n="",i=!1;for(let r of s){if(r==="<"&&(t++,t===1)){i=!0,n="";continue}if(r===">"&&(t>0&&t--,t===0&&i)){i=!1,n.trim()&&e.push(n),n="";continue}i&&(n+=r)}return e}function Nl(s){let e=new Set;for(let t of s){let n=t.split(",").map(i=>i.trim());for(let i of n){let r=i.match(/^([A-Za-z_$][A-Za-z0-9_$]*)/);r?.[1]&&e.add(r[1])}}return e}function ds(s,e){let t=[];for(let n of Al(s)){let i=$l(n);i&&Ml(i,e)&&t.push(i)}return t}function Mr(s){if(!s)return[];let e=s.replace(/\s+/g," ").trim();if(!e)return[];let t=Pl(e),n=Nl(t),i=[],r=new Set,o=(l,p,u)=>{let d=`${l}:${p}`;r.has(d)||(r.add(d),i.push({relationship:l,targetName:p,...u?{metadata:u}:{}}))},a=e.match(/\bextends\s+(.+?)(?=\bimplements\b|\{|=|$)/);if(a?.[1]){let l=ds(a[1],n);for(let p of l)o("extends",p,a[1].trim())}let c=e.match(/\bimplements\s+(.+?)(?=\{|=|$)/);if(c?.[1]){let l=ds(c[1],n);for(let p of l)o("implements",p,c[1].trim())}for(let l of t){let p=/([A-Za-z_$][A-Za-z0-9_$]*)\s+extends\s+([^,>]+)/g,u=null;for(;(u=p.exec(l))!==null;){let d=u[2]?.trim();if(!d)continue;let h=ds(d,n);for(let m of h)o("constrained_by",m,d)}}return i}var Ll,Ar=ee(()=>{"use strict";Ll=new Set(["any","unknown","never","void","null","undefined","string","number","boolean","symbol","object","bigint","readonly","keyof","infer","extends","implements","class","interface","type","function","new"])});import Dl from"path";var zn,$r=ee(()=>{"use strict";Ge();Ar();zn=class extends pe{findByPath(e){return this.get("SELECT * FROM files WHERE path = ?",e)}findAll(e){let t="SELECT * FROM files ORDER BY path ASC";return e&&(t+=` LIMIT ${e}`),this.all(t)}getAllPaths(){return this.all("SELECT path FROM files").map(t=>t.path)}findInSubPath(e,t){let n=Dl.resolve(e,t),i=n.endsWith("/")?n:n+"/";return this.all(`
       SELECT * FROM files 
       WHERE (path LIKE ? OR path = ?)
       ORDER BY path ASC
@@ -87,7 +87,7 @@ var Oc=Object.create;var Gi=Object.defineProperty;var Fc=Object.getOwnPropertyDe
             SUBSTR(path, LENGTH(?) + 2) as relPath
         FROM files
         WHERE path LIKE ? || '/%/package.json'
-    `,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(i=>{for(let r of i)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,n,i){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),o=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),a=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),c=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),l=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),p=this.db.prepare("DELETE FROM type_graph_edges WHERE file_path = ?"),u=this.db.prepare("INSERT INTO exports (file_path, name, kind, signature, doc, start_line, end_line, classification, capabilities, parent_id, embedding) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)"),d=this.db.prepare("INSERT INTO imports (file_path, module_specifier, imported_symbols, resolved_path) VALUES (?, ?, ?, ?)"),h=this.db.prepare("INSERT INTO configs (file_path, key, value, kind) VALUES (?, ?, ?, ?)"),m=this.db.prepare("INSERT INTO file_content (file_path, content) VALUES (?, ?)"),f=this.db.prepare("INSERT INTO event_synapses (file_path, type, name, direction, line_number, code_snippet) VALUES (?, ?, ?, ?, ?, ?)"),_=this.db.prepare("INSERT INTO type_graph_edges (file_path, source_symbol_id, source_symbol_name, target_symbol_name, relationship, line_number, metadata) VALUES (?, ?, ?, ?, ?, ?, ?)"),g=this.db.prepare(`
+    `,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(i=>{for(let r of i)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,n,i){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),o=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),a=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),c=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),l=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),p=this.db.prepare("DELETE FROM type_graph_edges WHERE file_path = ?"),u=this.db.prepare("INSERT INTO exports (file_path, name, kind, signature, doc, start_line, end_line, classification, capabilities, parent_id, embedding) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)"),d=this.db.prepare("INSERT INTO imports (file_path, module_specifier, imported_symbols, resolved_path) VALUES (?, ?, ?, ?)"),h=this.db.prepare("INSERT INTO configs (file_path, key, value, kind) VALUES (?, ?, ?, ?)"),m=this.db.prepare("INSERT INTO file_content (file_path, content) VALUES (?, ?)"),f=this.db.prepare("INSERT INTO event_synapses (file_path, type, name, direction, line_number, code_snippet) VALUES (?, ?, ?, ?, ?, ?)"),S=this.db.prepare("INSERT INTO type_graph_edges (file_path, source_symbol_id, source_symbol_name, target_symbol_name, relationship, line_number, metadata) VALUES (?, ?, ?, ?, ?, ?, ?)"),y=this.db.prepare(`
         INSERT INTO files (path, mtime, last_scanned_at, classification, summary, embedding, content_hash)
         VALUES (?, ?, ?, ?, ?, ?, ?)
         ON CONFLICT(path) DO UPDATE SET
@@ -97,7 +97,7 @@ var Oc=Object.create;var Gi=Object.defineProperty;var Fc=Object.getOwnPropertyDe
             summary=excluded.summary,
             embedding=excluded.embedding,
             content_hash=excluded.content_hash
-    `),b=this.db.transaction(x=>{for(let R of x){let{meta:k,exports:D,imports:U,configs:P,events:E,content:T,classification:I,summary:M,embedding:N,contentHash:$}=R;r.run(k.path),o.run(k.path),a.run(k.path),c.run(k.path),l.run(k.path),p.run(k.path);let W=$??(T&&n?n(T):null);if(g.run(k.path,k.mtime,Date.now(),I||"Unknown",M||"",N?JSON.stringify(N):null,W),D){let L=(A,H,F)=>{for(let v of H){let C=v.embedding?JSON.stringify(v.embedding):null,B=u.run(A,v.name,v.kind,v.signature,v.doc||"",v.line,v.endLine||v.line,v.classification||"Other",v.capabilities||"[]",F,C),j=Number(B.lastInsertRowid);if(Number.isFinite(j)){let J=ar(v.signature);for(let z of J)z.targetName!==v.name&&_.run(A,j,v.name,z.targetName,z.relationship,v.line,z.metadata||null)}v.members&&v.members.length>0&&L(A,v.members,B.lastInsertRowid)}};L(k.path,D,null)}if(U)for(let L of U){let A=L.resolved_path!==void 0?L.resolved_path:i?.(L.module,k.path,t)??"";d.run(k.path,L.module,L.name,A)}if(P)for(let L of P)h.run(k.path,L.key,L.value,L.kind);if(T!==void 0&&m.run(k.path,T),E)for(let L of E)f.run(k.path,L.type,L.name,L.direction,L.line,L.snippet)}}),w=500;for(let x=0;x<e.length;x+=w)b(e.slice(x,x+w))}getLatestScanTime(){return this.get("SELECT MAX(last_scanned_at) as t FROM files")?.t||null}buildContentFtsQuery(e){let t=e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(r=>r.trim()).filter(r=>r.length>=2).slice(0,12);if(t.length===0)return"";if(t.length===1)return`${t[0]}*`;let n=`"${t.join(" ")}"`,i=t.map(r=>`${r}*`).join(" OR ");return`${n} OR ${i}`}}});var In,pr=Z(()=>{"use strict";Ue();In=class s extends ae{static HTTP_METHOD_EXPORTS=new Set(["GET","POST","PUT","PATCH","DELETE","HEAD","OPTIONS"]);findByNameAndFile(e,t){return this.all("SELECT * FROM exports WHERE file_path = ? AND name = ?",t,e)}findByNameGlobal(e){return this.all("SELECT * FROM exports WHERE name = ?",e)}findAtLine(e,t){return this.get(`
+    `),_=this.db.transaction(R=>{for(let T of R){let{meta:k,exports:F,imports:B,configs:M,events:v,content:I,classification:$,summary:P,embedding:U,contentHash:A}=T;r.run(k.path),o.run(k.path),a.run(k.path),c.run(k.path),l.run(k.path),p.run(k.path);let H=A??(I&&n?n(I):null);if(y.run(k.path,k.mtime,Date.now(),$||"Unknown",P||"",U?JSON.stringify(U):null,H),F){let L=(D,J,z)=>{for(let g of J){let x=g.embedding?JSON.stringify(g.embedding):null,O=u.run(D,g.name,g.kind,g.signature,g.doc||"",g.line,g.endLine||g.line,g.classification||"Other",g.capabilities||"[]",z,x),C=Number(O.lastInsertRowid);if(Number.isFinite(C)){let W=Mr(g.signature);for(let j of W)j.targetName!==g.name&&S.run(D,C,g.name,j.targetName,j.relationship,g.line,j.metadata||null)}g.members&&g.members.length>0&&L(D,g.members,O.lastInsertRowid)}};L(k.path,F,null)}if(B)for(let L of B){let D=L.resolved_path!==void 0?L.resolved_path:i?.(L.module,k.path,t)??"";d.run(k.path,L.module,L.name,D)}if(M)for(let L of M)h.run(k.path,L.key,L.value,L.kind);if(I!==void 0&&m.run(k.path,I),v)for(let L of v)f.run(k.path,L.type,L.name,L.direction,L.line,L.snippet)}}),E=500;for(let R=0;R<e.length;R+=E)_(e.slice(R,R+E))}getLatestScanTime(){return this.get("SELECT MAX(last_scanned_at) as t FROM files")?.t||null}buildContentFtsQuery(e){let t=e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(r=>r.trim()).filter(r=>r.length>=2).slice(0,12);if(t.length===0)return"";if(t.length===1)return`${t[0]}*`;let n=`"${t.join(" ")}"`,i=t.map(r=>`${r}*`).join(" OR ");return`${n} OR ${i}`}}});var Hn,Pr=ee(()=>{"use strict";Ge();Hn=class s extends pe{static HTTP_METHOD_EXPORTS=new Set(["GET","POST","PUT","PATCH","DELETE","HEAD","OPTIONS"]);findByNameAndFile(e,t){return this.all("SELECT * FROM exports WHERE file_path = ? AND name = ?",t,e)}findByNameGlobal(e){return this.all("SELECT * FROM exports WHERE name = ?",e)}findAtLine(e,t){return this.get(`
       SELECT * FROM exports 
       WHERE file_path = ? AND start_line <= ? AND end_line >= ?
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       SELECT ws.symbol_id, m.name as mission_name, m.status
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           'inbound' AS direction
         FROM type_graph_edges
         WHERE target_symbol_name = ?
-      `,p=[e];r&&(l+=" AND relationship = ?",p.push(r)),l+=" ORDER BY file_path ASC, line_number ASC, source_symbol_name ASC LIMIT ?",p.push(a),c.push(...this.all(l,...p))}return c.slice(0,a)}findTypeGraphEdgesBySymbolId(e,t={}){let n=this.findById(e);return n?this.findTypeGraphEdges(n.name,{...t,filePath:n.file_path}):[]}}});var ur,dr=Z(()=>{"use strict";ur=`
+      `,p=[e];r&&(l+=" AND relationship = ?",p.push(r)),l+=" ORDER BY file_path ASC, line_number ASC, source_symbol_name ASC LIMIT ?",p.push(a),c.push(...this.all(l,...p))}return c.slice(0,a)}findTypeGraphEdgesBySymbolId(e,t={}){let n=this.findById(e);return n?this.findTypeGraphEdges(n.name,{...t,filePath:n.file_path}):[]}}});var Nr,Dr=ee(()=>{"use strict";Nr=`
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-`});var Ln,mr=Z(()=>{"use strict";Ue();dr();Ln=class extends ae{findByFile(e){return this.all("SELECT * FROM imports WHERE file_path = ?",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM imports WHERE file_path IN (${t}) ORDER BY file_path`,...e)}getAllResolved(){return this.all(`
+`});var Bn,Or=ee(()=>{"use strict";Ge();Dr();Bn=class extends pe{findByFile(e){return this.all("SELECT * FROM imports WHERE file_path = ?",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM imports WHERE file_path IN (${t}) ORDER BY file_path`,...e)}getAllResolved(){return this.all(`
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@@ -347,7 +347,7 @@ ORDER BY dc.depth, dc.consumer_path;
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ot={};qi(ot,{EmbeddingPriorityQueue:()=>Zi,EmbeddingWorkerPool:()=>sn,cosineSimilarity:()=>Mn,generateEmbedding:()=>ts,generateEmbeddingsBatch:()=>ns,getDefaultPool:()=>Ot,setUseWorkerThreads:()=>Pn,shutdownDefaultPool:()=>$n});async function Rl(){return rn||(rn=await import("@xenova/transformers"),rn.env.cacheDir="./.cache",rn.env.allowLocalModels=!0),rn}function Pn(s){es=s,S.info({useWorkerThreads:s},"Worker thread mode updated")}function Sr(s=!1){let e=(on||"").toLowerCase(),t={};return on&&(t.dtype=on),s?(t.quantized=!1,t):(e==="fp32"||e==="fp16"||e==="float32"||e==="float16"?t.quantized=!1:e.startsWith("q")&&(t.quantized=!0),t)}async function kl(){S.info({model:An,dtype:on},"Loading embedding model...");let{pipeline:s}=await Rl(),e=Sr(!1);try{return await s("feature-extraction",An,e)}catch(t){let n=t?.message||"";if(!(n.includes("/onnx/model_quantized.onnx")||n.includes("model_quantized.onnx")))throw t;return S.warn({model:An,dtype:on},"Quantized ONNX artifact missing, retrying 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S.debug({total:s.length,successful:n.filter(r=>r!==null).length},"Batch embedding complete"),n}function Mn(s,e){let t=0,n=0,i=0;for(let r=0;r<s.length;r++)t+=s[r]*e[r],n+=s[r]*s[r],i+=e[r]*e[r];return t/(Math.sqrt(n)*Math.sqrt(i))}var An,on,rn,wr,es,Xi,Zi,Ae=Z(()=>{"use strict";q();Er();An=process.env.EMBEDDING_MODEL??"Xenova/all-MiniLM-L6-v2",on=process.env.EMBEDDING_DTYPE??"fp32",rn=null;wr=128,es=!1;Xi=null;Zi=class{queue=[];processing=!1;results=new Map;enqueue(e){this.queue.push(e),this.queue.sort((t,n)=>n.priority-t.priority)}enqueueMany(e){this.queue.push(...e),this.queue.sort((t,n)=>n.priority-t.priority)}get size(){return this.queue.length}get isProcessing(){return this.processing}getResult(e){return this.results.get(e)}async processQueue(e=wr,t){if(this.processing)return S.warn("Queue processing already in progress"),this.results;this.processing=!0;let n=this.queue.length;try{es?await this.processQueueParallel(e,n,t):await this.processQueueSequential(e,n,t)}finally{this.processing=!1}return this.results}async processQueueSequential(e,t,n){for(;this.queue.length>0;){let i=this.queue.splice(0,e),r=i.map(a=>a.text),o=await vr(r,r.length);if(i.forEach((a,c)=>{this.results.set(a.id,o[c])}),n){let a=t-this.queue.length;n(a,t)}}}async processQueueParallel(e,t,n){let i=this.queue.splice(0),r=i.map(c=>c.text),a=await Ot().generateEmbeddings(r,e,(c,l)=>{n&&n(c,l)});i.forEach((c,l)=>{this.results.set(c.id,a[l])})}clear(){this.queue=[],this.results.clear()}}});var Nn,Tr=Z(()=>{"use strict";Ue();Nn=class extends ae{findById(e){return this.get("SELECT * FROM missions WHERE id = ?",e)}findByIds(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM missions WHERE id IN (${t})`,...e)}findActive(e){let t="SELECT * FROM missions WHERE status IN ('in-progress', 'planned', 'verifying')",n=[];return e&&(t+=" AND git_branch = ?",n.push(e)),t+=` ORDER BY 
+        `,...e,`%${t}%`)?.count||0}findImpactDependents(e,t,n){return this.all(Nr,e,t,n,t)}getCount(){return this.get("SELECT COUNT(*) as count FROM imports")?.count||0}}});import{fileURLToPath as Ol}from"node:url";import{dirname as ms,join as Wr,resolve as Fl}from"node:path";import{existsSync as Wl}from"node:fs";function Hl(){let s=Fr;for(;s!==ms(s);){if(Wl(Wr(s,"package.json")))return s;s=ms(s)}return Fl(Fr,"..","..")}function Le(...s){return Wr(Hl(),...s)}var zl,Fr,Nt=ee(()=>{"use strict";zl=Ol(import.meta.url),Fr=ms(zl)});import{Worker as Bl}from"node:worker_threads";import{cpus as Ul}from"node:os";import{fileURLToPath as jl}from"node:url";import{dirname as Gl,join as zr}from"node:path";import{existsSync as Hr}from"node:fs";function ql(){if(Ur.endsWith(".ts")){let e=zr(Br,"worker.ts");if(Hr(e))return e}let s=zr(Br,"worker.js");return Hr(s)?s:Le("dist/logic/domain/embeddings/worker.js")}function Kt(s){return Yt||(Yt=new gn(s)),Yt}async function Un(){Yt&&(await Yt.shutdown(),Yt=null)}var Ur,Br,gn,Yt,jr=ee(()=>{"use strict";G();Nt();Ur=jl(import.meta.url),Br=Gl(Ur);gn=class{workers=[];taskQueue=[];pendingTasks=new Map;taskIdCounter=0;initialized=!1;initPromise;shutdownRequested=!1;numWorkers;cacheDir;initTimeout;constructor(e={}){this.numWorkers=e.numWorkers??Math.max(1,Math.min(2,Ul().length-1)),this.cacheDir=e.cacheDir??"./.cache",this.initTimeout=e.initTimeout??6e4}async initialize(){if(!this.initialized)return this.initPromise?this.initPromise:(this.initPromise=this._doInitialize(),this.initPromise)}async _doInitialize(){let e;try{w.info({numWorkers:this.numWorkers},"Initializing embedding worker pool");let t=new Promise((n,i)=>{e=setTimeout(()=>i(new Error(`Worker pool initialization timed out after ${this.initTimeout}ms`)),this.initTimeout)});if(await Promise.race([this._initializeWorkers(),t]),e&&clearTimeout(e),this.shutdownRequested){this.initialized=!1,this.initPromise=void 0,w.debug("Initialization completed but shutdown was requested");return}this.initialized=!0,w.info({numWorkers:this.workers.length},"Embedding worker pool ready")}catch(t){throw e&&clearTimeout(e),this.initPromise=void 0,this.initialized=!1,await this.shutdown(),t}}async _initializeWorkers(){let e=ql();w.debug({workerPath:e},"Resolved worker path");let t=[];for(let n=0;n<this.numWorkers;n++)n>0&&await new Promise(i=>setTimeout(i,25)),t.push(this.createWorker(e,n));await Promise.all(t)}async createWorker(e,t){return new Promise((n,i)=>{let r=setTimeout(()=>{i(new Error(`Worker ${t} initialization timed out`))},this.initTimeout),o=new Bl(e,{workerData:{cacheDir:this.cacheDir},execArgv:process.execArgv}),a={worker:o,busy:!1,currentTaskId:null};o.on("message",c=>{if(c.type==="ready"){if(clearTimeout(r),this.shutdownRequested){w.debug({workerIndex:t},"Worker ready but shutdown requested, terminating"),o.terminate().catch(()=>{}),n();return}this.workers.push(a),w.debug({workerIndex:t},"Worker ready"),n()}else c.type==="result"&&c.id?this.handleTaskComplete(a,c.id,c.embeddings||[]):c.type==="error"&&c.id&&this.handleTaskError(a,c.id,new Error(c.error||"Unknown error"))}),o.on("error",c=>{if(clearTimeout(r),w.error({err:c,workerIndex:t},"Worker error"),a.currentTaskId&&this.handleTaskError(a,a.currentTaskId,c),!this.initialized){i(c);return}let l=this.workers.indexOf(a);l!==-1&&this.workers.splice(l,1),!this.shutdownRequested&&this.initialized&&this.createWorker(e,t).catch(p=>{w.error({err:p},"Failed to replace crashed worker")})}),o.on("exit",c=>{c!==0&&!this.shutdownRequested&&w.warn({workerIndex:t,code:c},"Worker exited unexpectedly")})})}handleTaskComplete(e,t,n){let i=this.pendingTasks.get(t);i&&(this.pendingTasks.delete(t),i.resolve(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}handleTaskError(e,t,n){let i=this.pendingTasks.get(t);i&&(this.pendingTasks.delete(t),i.reject(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}processQueue(){if(this.taskQueue.length===0)return;let e=this.workers.find(n=>!n.busy);if(!e)return;let t=this.taskQueue.shift();t&&(e.busy=!0,e.currentTaskId=t.id,this.pendingTasks.set(t.id,t),e.worker.postMessage({type:"embed",id:t.id,texts:t.texts}))}async generateEmbeddings(e,t=128,n){if(this.initialized||await this.initialize(),e.length===0)return[];let i=[];for(let l=0;l<e.length;l+=t)i.push(e.slice(l,l+t));let r=new Array(i.length),o=0,a=i.map((l,p)=>new Promise((u,d)=>{let m={id:`task_${++this.taskIdCounter}`,texts:l,resolve:f=>{if(r[p]=f,o++,n){let S=Math.min(o*t,e.length);n(S,e.length)}u()},reject:f=>{if(r[p]=new Array(l.length).fill(null),o++,w.warn({err:f,chunkIndex:p},"Chunk embedding failed"),n){let S=Math.min(o*t,e.length);n(S,e.length)}u()}};this.taskQueue.push(m),this.processQueue()}));await Promise.all(a);let c=[];for(let l of r)c.push(...l);return w.info({total:e.length,successful:c.filter(l=>l!==null).length,workers:this.workers.length},"Parallel embedding generation complete"),c}get workerCount(){return this.workers.length}get busyWorkers(){return this.workers.filter(e=>e.busy).length}get queueSize(){return this.taskQueue.length}get isInitialized(){return this.initialized}async shutdown(){if(this.shutdownRequested=!0,this.initPromise)try{await this.initPromise}catch{}if(!this.initialized&&this.workers.length===0){this.shutdownRequested=!1,this.initPromise=void 0;return}w.info({numWorkers:this.workers.length},"Shutting down embedding worker pool");let e=this.workers.map(t=>new Promise(n=>{t.worker.postMessage({type:"shutdown"}),t.worker.once("exit",()=>n()),setTimeout(()=>{t.worker.terminate().then(()=>n())},5e3)}));await Promise.all(e),this.workers=[],this.taskQueue=[],this.pendingTasks.clear(),this.initialized=!1,this.shutdownRequested=!1,w.info("Embedding worker pool shutdown complete")}},Yt=null});var Et={};cs(Et,{EmbeddingPriorityQueue:()=>fs,EmbeddingWorkerPool:()=>gn,cosineSimilarity:()=>qn,generateEmbedding:()=>ys,generateEmbeddingsBatch:()=>bs,getDefaultPool:()=>Kt,setUseWorkerThreads:()=>Gn,shutdownDefaultPool:()=>Un});async function Vl(){return yn||(yn=await import("@xenova/transformers"),yn.env.cacheDir="./.cache",yn.env.allowLocalModels=!0),yn}function Gn(s){gs=s,w.info({useWorkerThreads:s},"Worker thread mode updated")}function Gr(s=!1){let e=(bn||"").toLowerCase(),t={};return bn&&(t.dtype=bn),s?(t.quantized=!1,t):(e==="fp32"||e==="fp16"||e==="float32"||e==="float16"?t.quantized=!1:e.startsWith("q")&&(t.quantized=!0),t)}async function Jl(){w.info({model:jn,dtype:bn},"Loading embedding model...");let{pipeline:s}=await Vl(),e=Gr(!1);try{return await s("feature-extraction",jn,e)}catch(t){let n=t?.message||"";if(!(n.includes("/onnx/model_quantized.onnx")||n.includes("model_quantized.onnx")))throw t;return w.warn({model:jn,dtype:bn},"Quantized ONNX artifact missing, retrying with unquantized ONNX"),await s("feature-extraction",jn,Gr(!0))}}async function Vr(){return hs||(hs=Jl()),hs}async function ys(s){try{let t=await(await Vr())(s,{pooling:"mean",normalize:!0});return Array.from(t.data)}catch(e){return w.error({err:e},"Failed to generate embedding"),null}}async function bs(s,e=qr,t){return s.length===0?[]:gs?Kt().generateEmbeddings(s,e,t):Jr(s,e,t)}async function Jr(s,e,t){let n=new Array(s.length).fill(null),i=await Vr();for(let r=0;r<s.length;r+=e){let o=Math.min(r+e,s.length),a=s.slice(r,o);try{let c=await i(a,{pooling:"mean",normalize:!0}),[l,p]=c.dims;for(let u=0;u<l;u++){let d=u*p,h=d+p;n[r+u]=Array.from(c.data.slice(d,h))}}catch(c){w.error({err:c,batchStart:r,batchEnd:o},"Single-threaded batch embedding failed, falling back to sequential for this chunk");for(let l=0;l<a.length;l++)try{let p=a[l];if(!p||p.trim().length===0)continue;let u=await i(p,{pooling:"mean",normalize:!0});n[r+l]=Array.from(u.data)}catch{n[r+l]=null}}t&&t(o,s.length)}return w.debug({total:s.length,successful:n.filter(r=>r!==null).length},"Batch embedding complete"),n}function qn(s,e){let t=0,n=0,i=0;for(let r=0;r<s.length;r++)t+=s[r]*e[r],n+=s[r]*s[r],i+=e[r]*e[r];return t/(Math.sqrt(n)*Math.sqrt(i))}var jn,bn,yn,qr,gs,hs,fs,qe=ee(()=>{"use strict";G();jr();jn=process.env.EMBEDDING_MODEL??"Xenova/all-MiniLM-L6-v2",bn=process.env.EMBEDDING_DTYPE??"fp32",yn=null;qr=128,gs=!1;hs=null;fs=class{queue=[];processing=!1;results=new Map;enqueue(e){this.queue.push(e),this.queue.sort((t,n)=>n.priority-t.priority)}enqueueMany(e){this.queue.push(...e),this.queue.sort((t,n)=>n.priority-t.priority)}get size(){return this.queue.length}get isProcessing(){return this.processing}getResult(e){return this.results.get(e)}async processQueue(e=qr,t){if(this.processing)return w.warn("Queue processing already in progress"),this.results;this.processing=!0;let n=this.queue.length;try{gs?await this.processQueueParallel(e,n,t):await this.processQueueSequential(e,n,t)}finally{this.processing=!1}return this.results}async processQueueSequential(e,t,n){for(;this.queue.length>0;){let i=this.queue.splice(0,e),r=i.map(a=>a.text),o=await Jr(r,r.length);if(i.forEach((a,c)=>{this.results.set(a.id,o[c])}),n){let a=t-this.queue.length;n(a,t)}}}async processQueueParallel(e,t,n){let i=this.queue.splice(0),r=i.map(c=>c.text),a=await Kt().generateEmbeddings(r,e,(c,l)=>{n&&n(c,l)});i.forEach((c,l)=>{this.results.set(c.id,a[l])})}clear(){this.queue=[],this.results.clear()}}});var Vn,Yr=ee(()=>{"use strict";Ge();Vn=class extends pe{findById(e){return this.get("SELECT * FROM missions WHERE id = ?",e)}findByIds(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM missions WHERE id IN (${t})`,...e)}findActive(e){let t="SELECT * FROM missions WHERE status IN ('in-progress', 'planned', 'verifying')",n=[];return e&&(t+=" AND git_branch = ?",n.push(e)),t+=` ORDER BY 
         CASE WHEN status = 'in-progress' THEN 0 WHEN status = 'verifying' THEN 1 ELSE 2 END, 
         created_at ASC`,this.all(t,...n)}findAll(e){let t="SELECT * FROM missions",n=[];return e&&(t+=" WHERE status = ?",n.push(e)),t+=` ORDER BY 
         CASE WHEN status = 'in-progress' THEN 0 WHEN status = 'verifying' THEN 1 ELSE 2 END, 
@@ -438,7 +438,7 @@ ORDER BY dc.depth, dc.consumer_path;
         SELECT linked_repo_path, linked_mission_id, relationship, direction
         FROM cross_repo_links
         WHERE mission_id = ?
-      `,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}addHandoff(e,t){let n=JSON.stringify(t),i=e??0,r=this.insert("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",i,"handoff",t.kind,n),o=[`[handoff:${t.kind}]`,...t.findings.map(a=>a.statement),...t.risks.map(a=>a.description),...t.gaps].filter(Boolean).join(" ");return Promise.resolve().then(()=>(Ae(),ot)).then(({generateEmbedding:a})=>a(o)).then(a=>{a&&this.run("UPDATE mission_artifacts SET embedding = ? WHERE id = ?",JSON.stringify(a),r)}).catch(()=>{}),r}getHandoffs(e,t,n=20){let i=["type = 'handoff'"],r=[];e!==void 0&&(i.push("mission_id = ?"),r.push(e??0)),t&&(i.push("identifier = ?"),r.push(t));let o=`SELECT * FROM mission_artifacts WHERE ${i.join(" AND ")} ORDER BY created_at DESC LIMIT ?`;return r.push(n),this.all(o,...r)}async findSemanticHandoffs(e,t=5){let{cosineSimilarity:n}=await Promise.resolve().then(()=>(Ae(),ot)),i=this.all("SELECT * FROM mission_artifacts WHERE type = 'handoff' AND embedding IS NOT NULL"),r=[];for(let o of i)try{let a=JSON.parse(o.embedding),c=n(e,a);c>.3&&r.push({...o,similarity:c})}catch{}return r.sort((o,a)=>a.similarity-o.similarity).slice(0,t)}}});var Dn,Rr=Z(()=>{"use strict";Ue();q();Dn=class s extends ae{findByMission(e,t=50){return this.all(`
+      `,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}addHandoff(e,t){let n=JSON.stringify(t),i=e??0,r=this.insert("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",i,"handoff",t.kind,n),o=[`[handoff:${t.kind}]`,...t.findings.map(a=>a.statement),...t.risks.map(a=>a.description),...t.gaps].filter(Boolean).join(" ");return Promise.resolve().then(()=>(qe(),Et)).then(({generateEmbedding:a})=>a(o)).then(a=>{a&&this.run("UPDATE mission_artifacts SET embedding = ? WHERE id = ?",JSON.stringify(a),r)}).catch(()=>{}),r}getHandoffs(e,t,n=20){let i=["type = 'handoff'"],r=[];e!==void 0&&(i.push("mission_id = ?"),r.push(e??0)),t&&(i.push("identifier = ?"),r.push(t));let o=`SELECT * FROM mission_artifacts WHERE ${i.join(" AND ")} ORDER BY created_at DESC LIMIT ?`;return r.push(n),this.all(o,...r)}async findSemanticHandoffs(e,t=5){let{cosineSimilarity:n}=await Promise.resolve().then(()=>(qe(),Et)),i=this.all("SELECT * FROM mission_artifacts WHERE type = 'handoff' AND embedding IS NOT NULL"),r=[];for(let o of i)try{let a=JSON.parse(o.embedding),c=n(e,a);c>.3&&r.push({...o,similarity:c})}catch{}return r.sort((o,a)=>a.similarity-o.similarity).slice(0,t)}}});var Jn,Kr=ee(()=>{"use strict";Ge();G();Jn=class s extends pe{findByMission(e,t=50){return this.all(`
       SELECT 
         id, mission_id, symbol_id, file_path, type, content, confidence, 
         symbol_name, signature, commit_sha, is_crystallized, crystal_id, 
@@ -459,7 +459,7 @@ ORDER BY dc.depth, dc.consumer_path;
     `,e)}create(e){let t=this.insert(`
       INSERT INTO intent_logs (mission_id, symbol_id, file_path, type, content, confidence, symbol_name, signature, commit_sha)
       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
-    `,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha);return s.EMBEDDABLE_TYPES.has(e.type)&&this.generateAndStoreEmbedding(Number(t),e).catch(n=>{S.debug({err:n,intentLogId:t},"Failed to generate intent log embedding")}),t}static EMBEDDABLE_TYPES=new Set(["decision","discovery","fix","blocker","note","heritage","crystal"]);static buildEmbeddingText(e){let t=[`[${e.type}]`];return e.symbol_name&&t.push(`symbol: ${e.symbol_name}`),e.file_path&&t.push(`file: ${e.file_path.split("/").pop()}`),t.push(e.content),t.join(" ")}async generateAndStoreEmbedding(e,t){let{generateEmbedding:n}=await Promise.resolve().then(()=>(Ae(),ot)),i=s.buildEmbeddingText(t),r=await n(i);r&&this.run("UPDATE intent_logs SET embedding = ? WHERE id = ?",JSON.stringify(r),e)}findWithEmbeddings(){return this.all("SELECT * FROM intent_logs WHERE embedding IS NOT NULL AND type NOT IN ('system', 'lapsed')")}async findSemanticMatches(e,t,n){let{cosineSimilarity:i}=await Promise.resolve().then(()=>(Ae(),ot)),r=this.findWithEmbeddings();if(r.length>5e3)return S.warn({count:r.length},"Intent log count exceeds brute-force vector scan limit (5000). Skipping semantic recall."),[];let o=[];for(let a of r)if(!(n&&a.symbol_id===n))try{let c=JSON.parse(a.embedding),l=i(e,c);l>.25&&o.push({id:a.id,mission_id:a.mission_id,type:a.type,content:a.content,symbol_name:a.symbol_name,file_path:a.file_path,similarity:l,created_at:a.created_at})}catch{}return o.sort((a,c)=>c.similarity-a.similarity).slice(0,t)}delete(e){this.run("DELETE FROM intent_logs WHERE id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let i=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE intent_logs SET ${i} WHERE id = ?`,...r)}findRepairableOrphans(){return this.all(`
+    `,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha);return s.EMBEDDABLE_TYPES.has(e.type)&&this.generateAndStoreEmbedding(Number(t),e).catch(n=>{w.debug({err:n,intentLogId:t},"Failed to generate intent log embedding")}),t}static EMBEDDABLE_TYPES=new Set(["decision","discovery","fix","blocker","note","heritage","crystal"]);static buildEmbeddingText(e){let t=[`[${e.type}]`];return e.symbol_name&&t.push(`symbol: ${e.symbol_name}`),e.file_path&&t.push(`file: ${e.file_path.split("/").pop()}`),t.push(e.content),t.join(" ")}async generateAndStoreEmbedding(e,t){let{generateEmbedding:n}=await Promise.resolve().then(()=>(qe(),Et)),i=s.buildEmbeddingText(t),r=await n(i);r&&this.run("UPDATE intent_logs SET embedding = ? WHERE id = ?",JSON.stringify(r),e)}findWithEmbeddings(){return this.all("SELECT * FROM intent_logs WHERE embedding IS NOT NULL AND type NOT IN ('system', 'lapsed')")}async findSemanticMatches(e,t,n){let{cosineSimilarity:i}=await Promise.resolve().then(()=>(qe(),Et)),r=this.findWithEmbeddings();if(r.length>5e3)return w.warn({count:r.length},"Intent log count exceeds brute-force vector scan limit (5000). Skipping semantic recall."),[];let o=[];for(let a of r)if(!(n&&a.symbol_id===n))try{let c=JSON.parse(a.embedding),l=i(e,c);l>.25&&o.push({id:a.id,mission_id:a.mission_id,type:a.type,content:a.content,symbol_name:a.symbol_name,file_path:a.file_path,similarity:l,created_at:a.created_at})}catch{}return o.sort((a,c)=>c.similarity-a.similarity).slice(0,t)}delete(e){this.run("DELETE FROM intent_logs WHERE id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let i=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE intent_logs SET ${i} WHERE id = ?`,...r)}findRepairableOrphans(){return this.all(`
       SELECT id, file_path, symbol_name, signature 
       FROM intent_logs 
       WHERE symbol_id IS NULL AND symbol_name IS NOT NULL
@@ -522,32 +522,85 @@ ORDER BY dc.depth, dc.consumer_path;
          FROM intent_logs
          WHERE mission_id = ? AND is_crystallized = 0 AND type NOT IN ('adr', 'system', 'crystal', 'lapsed')
            AND created_at > ?
-         ORDER BY created_at DESC LIMIT ?`,e,n.created_at,t-1);return[n,...i]}return this.findByMission(e,t)}async findSemanticTheme(e,t,n=200){let{cosineSimilarity:i}=await Promise.resolve().then(()=>(Ae(),ot)),r=this.findWithEmbeddings(),o=[];for(let a of r)if(s.EMBEDDABLE_TYPES.has(a.type)&&!(t&&a.mission_id!==null&&!t.includes(a.mission_id)))try{let c=JSON.parse(a.embedding),l=i(e,c);l>.35&&o.push({...a,_similarity:l})}catch{}return o.sort((a,c)=>c._similarity-a._similarity).slice(0,n).map(({_similarity:a,...c})=>c)}crystallizeTheme(e,t,n){return this.transaction(()=>{let i=this.insert(`INSERT INTO intent_logs (mission_id, type, content, confidence, is_crystallized, symbol_id, file_path, symbol_name, signature, commit_sha)
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s.sort((t,n)=>n.classification.confidence-t.classification.confidence),{count:s.length,topFiles:s.slice(0,5).map(t=>({path:Jo.relative(e,t.path),confidence:t.classification.confidence,signals:t.classification.signals.slice(0,2)}))}}function kp(s,e,t){let n=[],i="Unknown",r=0,o=s.Entry.count/e*100,a=s.Logic.count/e*100,c=s.Data.count/e*100,l=s.Utility.count/e*100,p=s.Unknown.count/e*100;o>5&&a>10&&c>5&&p<40?(i="Layered",r=60+Math.min(30,(100-p)/3),n.push(`Clear layer separation: Entry (${o.toFixed(1)}%), Logic (${a.toFixed(1)}%), Data (${c.toFixed(1)}%)`)):l>20?(i="Modular",r=50+l/2,n.push(`High shared module usage: ${l.toFixed(1)}% utility files`)):p>60&&(i="Monolithic",r=40+p/4,n.push(`Limited architectural structure: ${p.toFixed(1)}% files with unclear layer assignment`));let u=t.configs.countByKind("Service");return u>3&&(i="Microservices",r=55+u*5,n.push(`Detected ${u} service definitions (likely microservices)`)),s.Entry.count===0&&n.push("\u26A0\uFE0F No clear entry points 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s){let e=s.message;if(typeof e=="string"&&e.trim())return e}return wu(s)}function ye(s){if(s instanceof Error){let e;return"cause"in s&&s.cause!==void 0&&(e=At(s.cause)),{errorName:s.name||"Error",errorMessage:s.message,errorStack:s.stack,...e?{errorCause:e}:{}}}return s&&typeof s=="object"?{errorName:s.constructor?.name||"Object",errorMessage:At(s)}:{errorName:typeof s,errorMessage:At(s)}}var gn=Z(()=>{"use strict"});var wa={};qi(wa,{HologramService:()=>Se});var Oe,Se,Gt=Z(()=>{"use strict";V();It();q();gn();Oe=S.child({module:"hologram"}),Se=class{repos;repoPath;constructor(e){this.repoPath=e,this.repos=O.getInstance(e)}updateTopography(e){Oe.debug({repoPath:this.repoPath},"Updating topography snapshot");let t=Object.values(e.layers).reduce((r,o)=>r+o.count,0),n={};for(let[r,o]of Object.entries(e.layers)){let a=t>0?o.count/t*100:0;n[r]={count:o.count,percentage:Math.round(a*10)/10,topFiles:o.topFiles.slice(0,3).map(c=>({path:c.path,confidence:c.confidence}))}}let 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e=this.repos.hologram.getAllSections(),t={metadata:{repoPath:this.repoPath,lastUpdated:Date.now(),version:"1.0.0"}};for(let n of e)try{let i=JSON.parse(n.data);switch(n.section){case"topography":t.topography=i;break;case"gravity":t.gravity=i;break;case"ghosts":t.ghosts=i;break}}catch(i){Oe.debug({repoPath:this.repoPath,section:n.section,...ye(i)},"Skipping malformed hologram section")}return t}getSection(e){let t=this.repos.hologram.getSection(e);if(!t)return null;try{return JSON.parse(t.data)}catch(n){return Oe.debug({repoPath:this.repoPath,section:e,...ye(n)},"Skipping malformed hologram section"),null}}computeGravityZones(){Oe.debug({repoPath:this.repoPath},"Computing gravity zones from import graph");let e=this.repos.files.getAllPaths(),t=new Map;for(let i of e){let r=Ct(i,this.repos);if(r.layer==="Test"||r.layer==="Unknown")continue;let o=this.repos.exports.findByFile(i);if(o.length===0)continue;let a=this.repos.imports.countDependents(i),c=this.repos.imports.countByFile(i),l=a*2+c;if(l>0){let p=o.find(d=>d.kind!=="TsTypeAliasDeclaration"&&d.kind!=="TsInterfaceDeclaration")||o[0],u=`${i}::${p.name}`;t.set(u,{symbol:p.name,filePath:i,inDegree:a,outDegree:c,gravity:l})}}let n=Array.from(t.values()).sort((i,r)=>r.gravity-i.gravity).slice(0,50);return Oe.info({repoPath:this.repoPath,count:n.length},"Gravity zones computed"),n}isInitialized(){return this.repos.hologram.getAllSections().length>0}clear(){this.repos.hologram.deleteAll(),Oe.info({repoPath:this.repoPath},"Hologram cleared")}}});var pc={};qi(pc,{GraphExporterService:()=>Vs});var lc,Vs,uc=Z(()=>{"use strict";V();q();lc=S.child({module:"graph-exporter"}),Vs=class{constructor(e){this.repoPath=e;this.repos=O.getInstance(e)}repos;async generateGraph(e={}){let{includeCompleted:t=!0,format:n="mermaid",focusMissionId:i,depth:r=10,limit:o=100}=e;lc.info({focusMissionId:i,depth:r,format:n,includeCompleted:t},"Generating mission 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a}parseStrategySteps(e){let t=[];return Array.isArray(e)?e.map((n,i)=>({id:n.id||`step-${i}`,description:n.description||n.content||n.name||`Step ${i+1}`,status:n.status,dependencies:n.dependencies||n.deps})):e.steps&&Array.isArray(e.steps)?this.parseStrategySteps(e.steps):typeof e=="object"?Object.entries(e).map(([n,i])=>({id:n,description:i.description||i.content||n,status:i.status,dependencies:i.dependencies||i.deps})):t}countNodes(e){let t=1;for(let n of e.children)t+=this.countNodes(n);return t}generateMermaidDiagram(e){let t=["graph TD"];for(let n of e)this.addMermaidNode(n,t);return t.join(`
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-${y.bold("\u{1F9E9} Symbols")}:     ${y.cyan(o.toString())} exports detected
-${y.bold("\u{1F552} Last Sync")}:   ${a?y.yellow(new Date(a).toLocaleString()):y.red("Never")}
-${y.bold("\u2699\uFE0F Config")}:      ${i?y.green("Custom Intelligence"):y.gray("Standard Sieve")}`,"blue"),c.length>0&&(console.log(""),console.log(`  ${y.bold("Symbol Distribution (Top 5)")}`),Bn(c.map(l=>({label:l.kind,value:l.c,color:"cyan"})),30)),console.log(""),console.log(`  ${y.dim("Pro-tip: Try")} ${y.bold(y.cyan("liquid-shadow dashboard"))} ${y.dim("for the full tactical view.")}`),console.log(""),Pe("Scouting complete.")})}finally{await Q(e)}}V();Ze();import jr from"path";var rs=class{startTime=Date.now();indexRuns=0;indexCacheHits=0;lastIndexDurationMs=null;lastIndexCompletedAt=null;lastRunPhases=[];queryCount=0;lastQueryLatencyMs=null;recentLatencySumMs=0;recentLatencyCount=0;recentLatencies=[];searchHistoryFailureCount=0;recordIndexStart(){this.indexRuns+=1}recordIndexCacheHit(){this.indexCacheHits+=1}recordIndexEnd(e){this.lastIndexDurationMs=e,this.lastIndexCompletedAt=Date.now()}recordIndexPhase(e,t){this.lastRunPhases.push({phase:e,durationMs:t})}clearIndexPhases(){this.lastRunPhases=[]}recordQueryStart(){let e=performance.now();return()=>{this.queryCount+=1;let t=performance.now()-e;if(this.lastQueryLatencyMs=t,this.recentLatencies.push(t),this.recentLatencies.length>100){let n=this.recentLatencies.shift();this.recentLatencySumMs=this.recentLatencySumMs-n+t}else this.recentLatencySumMs+=t,this.recentLatencyCount=this.recentLatencies.length}}recordSearchHistoryFailure(){this.searchHistoryFailureCount+=1}getSnapshot(){let e=this.recentLatencies.length,t=e>0?this.recentLatencies.reduce((n,i)=>n+i,0)/e:null;return{index:{runs:this.indexRuns,cacheHits:this.indexCacheHits,lastDurationMs:this.lastIndexDurationMs,lastCompletedAt:this.lastIndexCompletedAt,lastRunPhases:[...this.lastRunPhases]},query:{count:this.queryCount,lastLatencyMs:this.lastQueryLatencyMs,recentLatencySumMs:this.recentLatencySumMs,recentLatencyCount:e,avgLatencyMs:t,searchHistoryFailures:this.searchHistoryFailureCount},uptimeMs:Date.now()-this.startTime}}reset(){this.indexRuns=0,this.indexCacheHits=0,this.lastIndexDurationMs=null,this.lastIndexCompletedAt=null,this.lastRunPhases=[],this.queryCount=0,this.lastQueryLatencyMs=null,this.recentLatencySumMs=0,this.recentLatencyCount=0,this.recentLatencies=[],this.searchHistoryFailureCount=0}},ct=new rs;function Or(){ct.recordIndexStart()}function os(){ct.recordIndexCacheHit()}function Fr(s){ct.recordIndexEnd(s)}function an(s,e){ct.recordIndexPhase(s,e)}function Wr(){ct.clearIndexPhases()}function qn(){return ct.recordQueryStart()}function Ft(){ct.recordSearchHistoryFailure()}function Vn(){return ct.getSnapshot()}q();St();import ee from"fs";import Pl from"os";import Be from"path";var wt=S.child({module:"git-hooks"}),Ml="Generated by liquid-shadow",Nl=1e6,Hr=["post-merge","post-checkout","post-commit"];function Dl(){let s=process.env.LIQUID_SHADOW_CLI_ENTRY;if(s){let t=Be.resolve(s);if(ee.existsSync(t))return t}let e=_e("dist/entry/cli/index.js");return ee.existsSync(e)?e:null}function as(s){return s.includes("liquid-shadow")||s.includes("mcp-liquid-shadow")||s.includes(Ml)}function Ol(){let s=Be.join(Pl.homedir(),".mcp-liquid-shadow","logs"),e=Be.join(s,"post-checkout.log");try{if(!ee.existsSync(e)||ee.statSync(e).size<=Nl)return null;ee.mkdirSync(s,{recursive:!0});let n=`${e}.1`;return ee.existsSync(n)&&ee.unlinkSync(n),ee.renameSync(e,n),null}catch(t){return`Failed to rotate post-checkout.log: ${t}`}}function Fl(s,e){return{"post-merge":`#!/bin/sh
+    `,e,t)}deleteSection(e){this.run("DELETE FROM hologram_snapshot WHERE section = ?",e)}deleteAll(){this.run("DELETE FROM hologram_snapshot")}hasSection(e){return(this.get("SELECT COUNT(*) as count FROM hologram_snapshot WHERE section = ?",e)?.count??0)>0}}});var Xn,no=ee(()=>{"use strict";Ge();Xn=class extends pe{claimFile(e,t){try{this.run(`
+        INSERT INTO file_claims (file_path, mission_id, claimed_at, updated_at)
+        VALUES (?, ?, unixepoch(), unixepoch())
+      `,e,t);let n=this.getClaim(e);if(!n)throw new Error(`Failed to hydrate claim after insert for file ${e}`);return{status:"claimed",claim:n}}catch{let n=this.getClaim(e);if(!n)throw new Error(`Failed to read existing claim for file ${e}`);return n.mission_id===t?(this.run("UPDATE file_claims SET updated_at = unixepoch() WHERE file_path = ?",e),{status:"already_claimed",claim:this.getClaim(e)??n}):{status:"conflict",claim:n}}}releaseFile(e,t){let n=this.getClaim(e);return n?t!==void 0&&n.mission_id!==t?{released:!1,reason:"not_owner",claim:n}:(this.run("DELETE FROM file_claims WHERE file_path = ?",e),{released:!0}):{released:!1,reason:"not_found"}}releaseAllForMission(e){return this.run("DELETE FROM file_claims WHERE mission_id = ?",e)}getClaim(e){return this.get(`
+      SELECT
+        fc.file_path,
+        fc.mission_id,
+        fc.claimed_at,
+        fc.updated_at,
+        m.name AS mission_name,
+        m.status AS mission_status,
+        m.git_branch AS mission_branch
+      FROM file_claims fc
+      LEFT JOIN missions m ON m.id = fc.mission_id
+      WHERE fc.file_path = ?
+    `,e)}getClaimsForMission(e){return this.all(`
+      SELECT
+        fc.file_path,
+        fc.mission_id,
+        fc.claimed_at,
+        fc.updated_at,
+        m.name AS mission_name,
+        m.status AS mission_status,
+        m.git_branch AS mission_branch
+      FROM file_claims fc
+      LEFT JOIN missions m ON m.id = fc.mission_id
+      WHERE fc.mission_id = ?
+      ORDER BY fc.file_path ASC
+    `,e)}listClaims(){return this.all(`
+      SELECT
+        fc.file_path,
+        fc.mission_id,
+        fc.claimed_at,
+        fc.updated_at,
+        m.name AS mission_name,
+        m.status AS mission_status,
+        m.git_branch AS mission_branch
+      FROM file_claims fc
+      LEFT JOIN missions m ON m.id = fc.mission_id
+      ORDER BY fc.updated_at DESC, fc.file_path ASC
+    `)}getClaimsByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`
+      SELECT
+        fc.file_path,
+        fc.mission_id,
+        fc.claimed_at,
+        fc.updated_at,
+        m.name AS mission_name,
+        m.status AS mission_status,
+        m.git_branch AS mission_branch
+      FROM file_claims fc
+      LEFT JOIN missions m ON m.id = fc.mission_id
+      WHERE fc.file_path IN (${t})
+      ORDER BY fc.file_path ASC
+    `,...e)}}});var N,Y=ee(()=>{"use strict";ut();$r();Pr();Or();Yr();Kr();Qr();Zr();eo();to();no();N=class{static repositoryCache=new Map;static getInstance(e){let t=this.repositoryCache.get(e);if(t){let r=De(e),o=t.files?.database,c=!t.intentLogs||!t.searchHistory||!t.missions||!t.hologram||!t.claims;if(o===r&&r.open&&!c)return t;this.repositoryCache.delete(e)}let n=De(e),i={files:new zn(n),exports:new Hn(n),imports:new Bn(n),missions:new Vn(n),intentLogs:new Jn(n),configs:new Yn(n),content:new Kn(n),searchHistory:new Qn(n),hologram:new Zn(n),claims:new Xn(n)};return this.repositoryCache.set(e,i),i}static closeInstance(e){this.repositoryCache.delete(e),Wn(e)}static clearCache(e){this.repositoryCache.delete(e)}}});var ro=pl((Oh,_s)=>{var ti=process||{},io=ti.argv||[],ei=ti.env||{},Yl=!(ei.NO_COLOR||io.includes("--no-color"))&&(!!ei.FORCE_COLOR||io.includes("--color")||ti.platform==="win32"||(ti.stdout||{}).isTTY&&ei.TERM!=="dumb"||!!ei.CI),Kl=(s,e,t=s)=>n=>{let 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r={Entry:Tt(i.Entry,e),Logic:Tt(i.Logic,e),Data:Tt(i.Data,e),Utility:Tt(i.Utility,e),Infrastructure:Tt(i.Infrastructure,e),Test:Tt(i.Test,e),Types:Tt(i.Types,e),Unknown:Tt(i.Unknown,e)},o={};t.forEach(m=>{let f=_a.extname(m.path).toLowerCase();f&&(o[f]=(o[f]||0)+1)});let a={".ts":"TypeScript",".tsx":"Typescript (React)",".js":"JavaScript",".jsx":"JavaScript (React)",".py":"Python",".php":"PHP",".go":"Go",".rs":"Rust",".java":"Java",".cs":"C#",".rb":"Ruby",".vue":"Vue"},c={};Object.entries(o).forEach(([m,f])=>{let S=a[m];S&&(c[S]=(c[S]||0)+f)});let l=Object.entries(c).sort((m,f)=>f[1]-m[1]),p=l.length>0?l[0][0]:"Unknown",{pattern:u,patternConfidence:d,insights:h}=Jp(r,t.length,s);return{pattern:u,patternConfidence:d,layers:r,insights:h,primaryStack:p}}function Tt(s,e){return 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t={bridges:e.slice(0,20),updatedAt:Date.now()};this.repos.hologram.upsertSection("ghosts",JSON.stringify(t)),Qe.info({repoPath:this.repoPath},"Ghost bridges updated")}getSnapshot(){let e=this.repos.hologram.getAllSections(),t={metadata:{repoPath:this.repoPath,lastUpdated:Date.now(),version:"1.0.0"}};for(let n of e)try{let i=JSON.parse(n.data);switch(n.section){case"topography":t.topography=i;break;case"gravity":t.gravity=i;break;case"ghosts":t.ghosts=i;break}}catch(i){Qe.debug({repoPath:this.repoPath,section:n.section,...Re(i)},"Skipping malformed hologram section")}return t}getSection(e){let t=this.repos.hologram.getSection(e);if(!t)return null;try{return JSON.parse(t.data)}catch(n){return Qe.debug({repoPath:this.repoPath,section:e,...Re(n)},"Skipping malformed hologram section"),null}}computeGravityZones(){Qe.debug({repoPath:this.repoPath},"Computing gravity zones from import graph");let e=this.repos.files.getAllPaths(),t=new Map;for(let i of e){let r=Bt(i,this.repos);if(r.layer==="Test"||r.layer==="Unknown")continue;let o=this.repos.exports.findByFile(i);if(o.length===0)continue;let a=this.repos.imports.countDependents(i),c=this.repos.imports.countByFile(i),l=a*2+c;if(l>0){let p=o.find(d=>d.kind!=="TsTypeAliasDeclaration"&&d.kind!=="TsInterfaceDeclaration")||o[0],u=`${i}::${p.name}`;t.set(u,{symbol:p.name,filePath:i,inDegree:a,outDegree:c,gravity:l})}}let n=Array.from(t.values()).sort((i,r)=>r.gravity-i.gravity).slice(0,50);return Qe.info({repoPath:this.repoPath,count:n.length},"Gravity zones computed"),n}isInitialized(){return this.repos.hologram.getAllSections().length>0}clear(){this.repos.hologram.deleteAll(),Qe.info({repoPath:this.repoPath},"Hologram cleared")}}});var Dc={};cs(Dc,{GraphExporterService:()=>pr});var Nc,pr,Oc=ee(()=>{"use strict";Y();G();Nc=w.child({module:"graph-exporter"}),pr=class{constructor(e){this.repoPath=e;this.repos=N.getInstance(e)}repos;async generateGraph(e={}){let{includeCompleted:t=!0,format:n="mermaid",focusMissionId:i,depth:r=10,limit:o=100}=e;Nc.info({focusMissionId:i,depth:r,format:n,includeCompleted:t},"Generating mission graph");let a=this.buildMissionTree(i,t,r,o);return n==="json"?JSON.stringify(a,null,2):this.generateMermaidDiagram(a)}buildMissionTree(e,t,n,i){let r;if(e){let c=this.repos.missions.findById(e);r=c?[c]:[]}else r=this.repos.missions.findAll().filter(l=>!l.parent_id),t||(r=r.filter(l=>l.status!=="completed"));let o=0,a=[];for(let c of r){if(o>=i)break;let l=this.buildNode(c,t,n,1,{count:o,max:i});l&&(a.push(l),o+=this.countNodes(l))}return a}buildNode(e,t,n,i,r){if(i>n||r.count>=r.max)return null;let o;if(e.strategy_graph)try{let p=JSON.parse(e.strategy_graph);o=this.parseStrategySteps(p)}catch(p){Nc.debug({missionId:e.id,err:p},"Failed to parse strategy graph")}let a={id:e.id,name:e.name,status:e.status,goal:e.goal,branch:e.git_branch||void 0,children:[],steps:o},c=this.repos.missions.findByParentId(e.id),l=t?c:c.filter(p=>p.status!=="completed");for(let p of l){if(r.count>=r.max)break;let u=this.buildNode(p,t,n,i+1,r);u&&(a.children.push(u),r.count++)}return a}parseStrategySteps(e){let t=[];return Array.isArray(e)?e.map((n,i)=>({id:n.id||`step-${i}`,description:n.description||n.content||n.name||`Step ${i+1}`,status:n.status,dependencies:n.dependencies||n.deps})):e.steps&&Array.isArray(e.steps)?this.parseStrategySteps(e.steps):typeof e=="object"?Object.entries(e).map(([n,i])=>({id:n,description:i.description||i.content||n,status:i.status,dependencies:i.dependencies||i.deps})):t}countNodes(e){let t=1;for(let n of e.children)t+=this.countNodes(n);return t}generateMermaidDiagram(e){let t=["graph TD"];for(let n of e)this.addMermaidNode(n,t);return t.join(`
+`)}addMermaidNode(e,t,n){let i=`M${e.id}`,r=this.getStatusIcon(e.status),o=this.getStatusClass(e.status),a=`${r} ${e.name}`;if(t.push(`    ${i}["${this.escapeMermaid(a)}"]:::${o}`),n&&t.push(`    ${n} --> ${i}`),e.steps&&e.steps.length>0&&e.steps.length<=10)for(let c of e.steps){let l=`S${e.id}_${c.id}`,p=c.status||"pending",u=this.getStatusIcon(p),d=this.getStatusClass(p),h=`${u} ${c.description}`;if(t.push(`    ${l}["${this.escapeMermaid(h)}"]:::${d}`),t.push(`    ${i} -.-> ${l}`),c.dependencies&&c.dependencies.length>0)for(let m of c.dependencies){let f=`S${e.id}_${m}`;t.push(`    ${f} --> ${l}`)}}for(let c of e.children)this.addMermaidNode(c,t,i);n||(t.push(""),t.push("    classDef completed fill:#90EE90,stroke:#2E8B57,stroke-width:2px"),t.push("    classDef inProgress fill:#87CEEB,stroke:#4682B4,stroke-width:2px"),t.push("    classDef planned fill:#FFE4B5,stroke:#DAA520,stroke-width:2px"),t.push("    classDef suspended fill:#D3D3D3,stroke:#808080,stroke-width:2px"),t.push("    classDef failed fill:#FFB6C1,stroke:#DC143C,stroke-width:2px"),t.push("    classDef pending fill:#FFF8DC,stroke:#B8860B,stroke-width:1px"))}getStatusIcon(e){return{completed:"\u2713","in-progress":"\u26A1",planned:"\u{1F4CB}",suspended:"\u23F8",failed:"\u2717",pending:"\u25CB",verifying:"\u{1F50D}"}[e]||"\u25CB"}getStatusClass(e){return{completed:"completed","in-progress":"inProgress",planned:"planned",suspended:"suspended",failed:"failed",pending:"pending",verifying:"inProgress"}[e]||"pending"}escapeMermaid(e){return e.replace(/"/g,"#quot;").replace(/\n/g," ").replace(/\[/g,"#91;").replace(/]/g,"#93;").slice(0,100)}}});import"dotenv/config";import{Cli as fm}from"clerc";G();import wr from"fs";import gl from"path";import xr from"js-yaml";var vr={ignore:[],include:[],maxDepth:10},yl=[{name:".liquid-shadow.yaml",parse:s=>xr.load(s)??{}},{name:".liquid-shadow.yml",parse:s=>xr.load(s)??{}},{name:".ls.json",parse:s=>JSON.parse(s)},{name:".liquid-shadow.json",parse:s=>JSON.parse(s)},{name:".ls.rc",parse:s=>JSON.parse(s)},{name:".liquid-shadow.rc",parse:s=>JSON.parse(s)}];function ct(s){for(let{name:e,parse:t}of yl){let n=gl.join(s,e);if(wr.existsSync(n))try{let i=wr.readFileSync(n,"utf8"),r=t(i);return w.debug({repoPath:s,configFile:e},"Loaded repository configuration"),{...vr,...r}}catch(i){w.error({repoPath:s,file:e,err:i},"Failed to parse configuration file")}}return vr}function ls(s,e){let n=ct(s).cli??{};return{dir:e.dir??n.dir??".",level:e.level??n.level,deep:e.deep!==void 0?e.deep:n.deep}}Y();import Xl from"path";var ye=dl(ro(),1);import*as et from"@clack/prompts";var te={red:ye.default.red,green:ye.default.green,yellow:ye.default.yellow,blue:ye.default.blue,magenta:ye.default.magenta,cyan:ye.default.cyan,white:ye.default.white,gray:ye.default.gray,bold:ye.default.bold,dim:ye.default.dim,italic:ye.default.italic,underline:ye.default.underline,inverse:ye.default.inverse},St=s=>s.replace(/\x1b\[[0-9;]*m/g,""),ge=s=>et.intro(ye.default.bgCyan(ye.default.black(ye.default.bold(` ${s} `)))),Ve=s=>et.outro(ye.default.cyan(s)),ue=(s,e,t="blue")=>{let n=e.split(`
+`),i=St(s),r=Math.max(i.length+4,...n.map(c=>St(c).length))+2,o="\u2500".repeat(r),a=te[t];console.log(a(`\u250C${o}\u2510`)),console.log(a("\u2502 ")+te.bold(s).padEnd(r+(s.length-i.length)-1)+a("\u2502")),console.log(a(`\u251C${o}\u2524`)),n.forEach(c=>{let l=St(c),p=" ".repeat(r-l.length-1);console.log(a("\u2502 ")+c+p+a("\u2502"))}),console.log(a(`\u2514${o}\u2518`))},ni=(s,e)=>{let t=s.map((i,r)=>Math.max(St(i).length,...e.map(o=>St(o[r]||"").length))+2),n=te.cyan("\u2502");console.log(n),console.log(n+" "+s.map((i,r)=>te.bold(te.cyan(i)).padEnd(t[r]+(i.length-St(i).length))).join(te.gray(" "))+" "),e.forEach(i=>{console.log(n+" "+i.map((r,o)=>(r||"").padEnd(t[o]+(r.length-St(r).length))).join(te.gray(" "))+" ")}),console.log(n)},oo=(s,e="\u2022")=>{s.forEach(t=>{console.log(`${te.cyan("\u2502")}  ${te.cyan(e)} ${t}`)})},ii=(s,e=40)=>{let t=Math.max(...s.map(i=>i.value)),n=Math.max(...s.map(i=>St(i.label).length));console.log(te.cyan("\u2502")),s.forEach(i=>{let r=Math.round(i.value/t*e),o="\u2588".repeat(r)+te.dim("\u2591".repeat(e-r)),a=i.color?te[i.color]:te.cyan,c=i.label.padEnd(n);console.log(`${te.cyan("\u2502")}  ${te.bold(c)}  ${a(o)}  ${te.white(i.value.toString())}`)}),console.log(te.cyan("\u2502"))},Es=(s,e="")=>{s.forEach((t,n)=>{let i=n===s.length-1,r=i?"\u2514\u2500\u2500 ":"\u251C\u2500\u2500 ",o=t.color?te[t.color]:t.children?te.blue:te.white,a=t.info?` ${te.gray(`(${t.info})`)}`:"";if(console.log(`${te.cyan("\u2502")}  ${e}${te.gray(r)}${o(t.name)}${a}`),t.children&&t.children.length>0){let c=e+(i?"    ":"\u2502   ");Es(t.children,c)}})},Oe=()=>et.spinner();async function si(s,e,t){if(e.length===0)return;let n=await et.select({message:s,options:e.map(i=>({value:i.value,label:i.label,...i.hint!=null&&{hint:i.hint}})),...t?.limit!=null&&{maxItems:t.limit}});if(!et.isCancel(n))return n}var Zl=s=>{console.error("");let e=s instanceof Error?s.message:String(s);console.error(`  ${te.red("\u2716")} ${te.bold("Error: ")} ${e}`),s instanceof Error&&"cause"in s&&console.error(`    ${te.dim("Cause: "+String(s.cause))}`),console.error(""),process.exit(1)},Q=async s=>{try{await s()}catch(e){Zl(e)}},b=te;qe();ut();G();async function ne(s){w.debug("Performing graceful shutdown...");try{await Un()}catch(e){w.error({err:e},"Error shutting down worker pool")}try{s&&Wn(s)}catch(e){w.error({err:e},"Error closing database")}w.debug("Shutdown complete")}async function ao(s){let e=Xl.resolve(s);try{await Q(async()=>{ge("\u{1F311} Liquid Shadow: Scouting Report");let t=N.getInstance(e),n=ct(e),i=n.ignore&&n.ignore.length>0,r=t.files.getCount(),o=t.exports.getCount(),a=t.files.getLatestScanTime(),c=t.exports.getKindDistribution(5);ue("Intelligence Summary",`${b.bold("\u{1F4E1} Topology")}:    ${b.cyan(r.toString())} files mapped
+${b.bold("\u{1F9E9} Symbols")}:     ${b.cyan(o.toString())} exports detected
+${b.bold("\u{1F552} Last Sync")}:   ${a?b.yellow(new Date(a).toLocaleString()):b.red("Never")}
+${b.bold("\u2699\uFE0F Config")}:      ${i?b.green("Custom Intelligence"):b.gray("Standard Sieve")}`,"blue"),c.length>0&&(console.log(""),console.log(`  ${b.bold("Symbol Distribution (Top 5)")}`),ii(c.map(l=>({label:l.kind,value:l.c,color:"cyan"})),30)),console.log(""),console.log(`  ${b.dim("Pro-tip: Try")} ${b.bold(b.cyan("liquid-shadow dashboard"))} ${b.dim("for the full tactical view.")}`),console.log(""),Ve("Scouting complete.")})}finally{await ne(e)}}Y();ut();import fo from"path";var Ss=class{startTime=Date.now();indexRuns=0;indexCacheHits=0;lastIndexDurationMs=null;lastIndexCompletedAt=null;lastRunPhases=[];queryCount=0;lastQueryLatencyMs=null;recentLatencySumMs=0;recentLatencyCount=0;recentLatencies=[];searchHistoryFailureCount=0;recordIndexStart(){this.indexRuns+=1}recordIndexCacheHit(){this.indexCacheHits+=1}recordIndexEnd(e){this.lastIndexDurationMs=e,this.lastIndexCompletedAt=Date.now()}recordIndexPhase(e,t){this.lastRunPhases.push({phase:e,durationMs:t})}clearIndexPhases(){this.lastRunPhases=[]}recordQueryStart(){let e=performance.now();return()=>{this.queryCount+=1;let t=performance.now()-e;if(this.lastQueryLatencyMs=t,this.recentLatencies.push(t),this.recentLatencies.length>100){let n=this.recentLatencies.shift();this.recentLatencySumMs=this.recentLatencySumMs-n+t}else this.recentLatencySumMs+=t,this.recentLatencyCount=this.recentLatencies.length}}recordSearchHistoryFailure(){this.searchHistoryFailureCount+=1}getSnapshot(){let e=this.recentLatencies.length,t=e>0?this.recentLatencies.reduce((n,i)=>n+i,0)/e:null;return{index:{runs:this.indexRuns,cacheHits:this.indexCacheHits,lastDurationMs:this.lastIndexDurationMs,lastCompletedAt:this.lastIndexCompletedAt,lastRunPhases:[...this.lastRunPhases]},query:{count:this.queryCount,lastLatencyMs:this.lastQueryLatencyMs,recentLatencySumMs:this.recentLatencySumMs,recentLatencyCount:e,avgLatencyMs:t,searchHistoryFailures:this.searchHistoryFailureCount},uptimeMs:Date.now()-this.startTime}}reset(){this.indexRuns=0,this.indexCacheHits=0,this.lastIndexDurationMs=null,this.lastIndexCompletedAt=null,this.lastRunPhases=[],this.queryCount=0,this.lastQueryLatencyMs=null,this.recentLatencySumMs=0,this.recentLatencyCount=0,this.recentLatencies=[],this.searchHistoryFailureCount=0}},wt=new Ss;function co(){wt.recordIndexStart()}function ws(){wt.recordIndexCacheHit()}function lo(s){wt.recordIndexEnd(s)}function _n(s,e){wt.recordIndexPhase(s,e)}function po(){wt.clearIndexPhases()}function ri(){return wt.recordQueryStart()}function Qt(){wt.recordSearchHistoryFailure()}function oi(){return wt.getSnapshot()}G();Nt();import se from"fs";import ep from"os";import tt from"path";var Dt=w.child({module:"git-hooks"}),tp="Generated by liquid-shadow",np=1e6,uo=["post-merge","post-checkout","post-commit"];function ip(){let s=process.env.LIQUID_SHADOW_CLI_ENTRY;if(s){let t=tt.resolve(s);if(se.existsSync(t))return t}let e=Le("dist/entry/cli/index.js");return se.existsSync(e)?e:null}function xs(s){return s.includes("liquid-shadow")||s.includes("mcp-liquid-shadow")||s.includes(tp)}function sp(){let s=tt.join(ep.homedir(),".mcp-liquid-shadow","logs"),e=tt.join(s,"post-checkout.log");try{if(!se.existsSync(e)||se.statSync(e).size<=np)return null;se.mkdirSync(s,{recursive:!0});let n=`${e}.1`;return se.existsSync(n)&&se.unlinkSync(n),se.renameSync(e,n),null}catch(t){return`Failed to rotate post-checkout.log: ${t}`}}function rp(s,e){return{"post-merge":`#!/bin/sh
 # Liquid Shadow: Auto-refresh index after merge/pull
 # Generated by liquid-shadow
 
@@ -588,30 +641,30 @@ REPO_PATH="$(git rev-parse --show-toplevel)"
 nohup "${s}" "${e}" sync "$REPO_PATH" > /dev/null 2>&1 &
 
 exit 0
-`}}function zr(s){let{repoPath:e,enableAutoRefresh:t=!0,enableSymbolHealing:n=!0}=s,i=Be.join(e,".git","hooks"),r=[],o=[],a=[];if(!ee.existsSync(Be.join(e,".git")))return a.push("Not a git repository"),{installed:r,skipped:o,errors:a};ee.existsSync(i)||ee.mkdirSync(i,{recursive:!0});let c=Dl();if(!c)return a.push(`Unable to resolve CLI entry at install time. Expected ${_e("dist/entry/cli/index.js")} to exist.`),{installed:r,skipped:o,errors:a};let l=Fl(process.execPath,c),p=new Set;if(t&&(p.add("post-merge"),p.add("post-checkout")),n&&p.add("post-commit"),p.has("post-checkout")){let u=Ol();u&&(a.push(u),wt.warn({rotationError:u},"Post-checkout log rotation failed"))}for(let u of p){let d=Be.join(i,u),h=l[u];if(!h){a.push(`No template found for hook: ${u}`);continue}try{if(ee.existsSync(d)){let m=ee.readFileSync(d,"utf-8"),f=as(m);if(f&&m===h){ee.chmodSync(d,493),o.push(u),wt.info({hookName:u},"Hook already installed, skipping");continue}if(!f){let _=`${d}.backup-${Date.now()}`;ee.copyFileSync(d,_),wt.info({hookName:u,backupPath:_},"Backed up existing hook")}}ee.writeFileSync(d,h,{mode:493}),ee.chmodSync(d,493),r.push(u),wt.info({hookName:u},"Installed git hook")}catch(m){a.push(`Failed to install ${u}: ${m}`),wt.error({hookName:u,err:m},"Failed to install hook")}}return{installed:r,skipped:o,errors:a}}function Ur(s){let e=Be.join(s,".git","hooks"),t=[],n=[];if(!ee.existsSync(e))return{removed:t,errors:n};for(let i of Hr){let r=Be.join(e,i);try{if(ee.existsSync(r)){let o=ee.readFileSync(r,"utf-8");as(o)&&(ee.unlinkSync(r),t.push(i),wt.info({hookName:i},"Removed git hook"))}}catch(o){n.push(`Failed to remove ${i}: ${o}`),wt.error({hookName:i,err:o},"Failed to remove hook")}}return{removed:t,errors:n}}function Wl(s,e){let t=Be.join(s,".git","hooks"),n=Be.join(t,e);if(!ee.existsSync(t)||!ee.existsSync(n))return"missing";try{let i=ee.readFileSync(n,"utf-8");return as(i)?(ee.statSync(n).mode&73)!==0?"installed":"disabled":"foreign"}catch{return"foreign"}}function Wt(s){let e=[],t=[],n=[],i=[],r={};for(let a of Hr){let c=Wl(s,a);r[a]=c,c==="installed"&&e.push(a),c==="missing"&&t.push(a),c==="foreign"&&n.push(a),c==="disabled"&&i.push(a)}let o=[...t,...n,...i];return{installed:e,notInstalled:o,missing:t,foreign:n,disabled:i,statuses:r}}async function cs(s){let e=jr.resolve(s);try{await Y(async()=>{pe("Liquid Shadow Intelligence Dashboard");let t=O.getInstance(e),n=Vn(),i=Wt(e),r=t.files.getCount(),o=t.exports.getCount(),a=t.files.getLatestScanTime(),c=t.exports.getKindDistribution(5);if(se("Operational Core",`${y.bold("State")}:         ${Xe(e)?y.green("IDENTIFIED (Stable)"):y.red("UNKNOWN (Needs Index)")}
-${y.bold("Repository")}:    ${y.cyan(jr.basename(e))}
-${y.bold("Infrastructure")}: ${i.installed.length>0?y.green("Git-Hooked"):y.yellow("Standalone")}
-${y.bold("Last Sync")}:     ${a?y.yellow(new Date(a).toLocaleString()):y.red("Never")}`,"blue"),console.log(""),se("Intelligence Density",`${y.bold("Files Target")}:    ${y.cyan(r.toString())}
-${y.bold("Symbols Mapped")}:  ${y.cyan(o.toString())}
-${y.bold("Graph Edges")}:     ${y.cyan(t.imports.getCount().toString())}
-${y.bold("Hotspots")}:        ${y.yellow(c.length.toString())}`,"cyan"),n.query.count>0||n.index.runs>0){console.log("");let l=n.index.runs>0?(n.index.cacheHits/n.index.runs*100).toFixed(1):"0.0";se("Reasoning Efficiency",`${y.bold("Query Count")}:      ${y.cyan(n.query.count.toString())}
-${y.bold("Avg Latency")}:     ${y.yellow(`${n.query.avgLatencyMs?.toFixed(2)||0}ms`)}
-${y.bold("Cache Hit Rate")}:  ${y.green(`${l}%`)}`,"green")}c.length>0&&(console.log(""),console.log(`  ${y.bold("Intelligence Landscape")}`),Bn(c.map(l=>({label:l.kind,value:l.c,color:"cyan"})),35)),console.log(""),Pe("Liquid Shadow is observing.")})}finally{await Q(e)}}V();Ze();import Hl from"path";async function Br(s){let e=Hl.resolve(s);try{await Y(async()=>{let t=O.getInstance(e),n=Wt(e),i=Vn(),r=Math.floor(i.uptimeMs/1e3),o=Math.floor(r/60),a=Math.floor(o/60),c=a>0?`${a}h ${o%60}m`:o>0?`${o}m ${r%60}s`:`${r}s`,l=i.index.lastCompletedAt?new Date(i.index.lastCompletedAt).toLocaleString():"Never",p=i.index.lastDurationMs?`${(i.index.lastDurationMs/1e3).toFixed(2)}s`:"N/A",u=i.query.avgLatencyMs?`${i.query.avgLatencyMs.toFixed(2)}ms`:"N/A",d=i.query.lastLatencyMs?`${i.query.lastLatencyMs.toFixed(2)}ms`:"N/A",h=i.index.runs>0?(i.index.cacheHits/i.index.runs*100).toFixed(1):"0.0";se("Performance Metrics",`${y.bold("Uptime")}:              ${y.cyan(c)}
-${y.bold("Indexed")}:            ${Xe(e)?y.green("Yes"):y.red("No")}
-${y.bold("Files")}:              ${y.cyan(t.files.getCount().toString())}
-${y.bold("Exports")}:            ${y.cyan(t.exports.getCount().toString())}
-${y.bold("Imports")}:            ${y.cyan(t.imports.getCount().toString())}
-${y.bold("Last Indexed Commit")}: ${nn(e)?y.yellow(nn(e).substring(0,7)):y.red("None")}
-${y.bold("Git Hooks")}:          ${n.installed.length>0?y.green("Installed"):y.yellow("Not Installed")}`,"blue"),console.log(""),se("Index Metrics",`${y.bold("Total Runs")}:           ${y.cyan(i.index.runs.toString())}
-${y.bold("Cache Hits")}:          ${y.cyan(i.index.cacheHits.toString())}
-${y.bold("Cache Hit Rate")}:      ${y.cyan(`${h}%`)}
-${y.bold("Last Duration")}:       ${y.yellow(p)}
-${y.bold("Last Completed")}:      ${y.yellow(l)}`,"cyan"),i.index.lastRunPhases.length>0&&(console.log(""),console.log(`  ${y.bold("Last Index Run Phases:")}`),i.index.lastRunPhases.forEach(m=>{let f=`${(m.durationMs/1e3).toFixed(2)}s`;console.log(`    ${y.gray(m.phase.padEnd(20))} ${y.cyan(f)}`)})),console.log(""),se("Query Metrics",`${y.bold("Total Queries")}:        ${y.cyan(i.query.count.toString())}
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Use main-thread fallback.");S.debug({workerPath:e},"Resolved parser worker path");let t=[];for(let n=0;n<this.numWorkers;n++)t.push(this.createWorker(e,n));await Promise.all(t)}async createWorker(e,t){return new Promise((n,i)=>{let r=setTimeout(()=>{i(new Error(`Parser worker ${t} initialization timed out`))},this.initTimeout),o=new gp(e,{execArgv:process.execArgv}),a={worker:o,busy:!1,currentTaskId:null};o.on("message",c=>{if(c.type==="ready"){if(clearTimeout(r),this.shutdownRequested){o.terminate().catch(()=>{}),n();return}this.workers.push(a),S.debug({workerIndex:t},"Parser worker ready"),n()}else c.type==="result"&&c.id?this.handleTaskComplete(a,c.id,c.result):c.type==="error"&&c.id&&this.handleTaskError(a,c.id,new Error(c.error||"Unknown error"))}),o.on("error",c=>{if(clearTimeout(r),S.error({err:c,workerIndex:t},"Parser worker error"),a.currentTaskId&&this.handleTaskError(a,a.currentTaskId,c),!this.initialized){i(c);return}let l=this.workers.indexOf(a);l!==-1&&this.workers.splice(l,1),!this.shutdownRequested&&this.initialized&&this.createWorker(e,t).catch(p=>{S.error({err:p},"Failed to replace crashed parser worker")})}),o.on("exit",c=>{c!==0&&!this.shutdownRequested&&S.warn({workerIndex:t,code:c},"Parser worker exited unexpectedly")})})}handleTaskComplete(e,t,n){let i=this.pendingTasks.get(t);i&&(this.pendingTasks.delete(t),i.resolve(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}handleTaskError(e,t,n){let i=this.pendingTasks.get(t);i&&(this.pendingTasks.delete(t),i.reject(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}processQueue(){if(this.taskQueue.length===0)return;let e=this.workers.find(n=>!n.busy);if(!e)return;let t=this.taskQueue.shift();t&&(e.busy=!0,e.currentTaskId=t.id,this.pendingTasks.set(t.id,t),e.worker.postMessage({type:"parse",id:t.id,filePath:t.filePath}))}async parseFile(e){return this.initialized||await this.initialize(),new Promise((t,n)=>{let r={id:`parse_${++this.taskIdCounter}`,filePath:e,resolve:t,reject:n};this.taskQueue.push(r),this.processQueue()})}get workerCount(){return this.workers.length}get busyWorkers(){return this.workers.filter(e=>e.busy).length}get queueSize(){return this.taskQueue.length}get isInitialized(){return this.initialized}async shutdown(){if(this.shutdownRequested=!0,this.initPromise)try{await this.initPromise}catch{}if(!this.initialized&&this.workers.length===0){this.shutdownRequested=!1,this.initPromise=void 0;return}S.info({numWorkers:this.workers.length},"Shutting down parser worker pool");let e=this.workers.map(t=>new Promise(n=>{t.worker.postMessage({type:"shutdown"}),t.worker.once("exit",()=>n()),setTimeout(()=>{t.worker.terminate().then(()=>n())},5e3)}));await Promise.all(e),this.workers=[],this.taskQueue=[],this.pendingTasks.clear(),this.initialized=!1,this.shutdownRequested=!1,this.initPromise=void 0,S.info("Parser worker pool shutdown complete")}},Ut=null;function Ro(s){return Ut||(Ut=new gs(s)),Ut}async function ko(){Ut&&(await Ut.shutdown(),Ut=null)}V();q();It();ys();bs();_s();import{execSync as Yo}from"child_process";var fi=S.child({module:"heritage-analyzer"}),gi=class{repos;repoPath;constructor(e){this.repos=O.getInstance(e),this.repoPath=e}analyzeHeritage(e=20){try{fi.info({limit:e},"Analyzing repository heritage...");let t=Yo(`git log -n ${e} --pretty=format:"%H|%at|%an|%s"`,{cwd:this.repoPath,encoding:"utf-8"});if(!t)return;let n=t.split(`
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-}`,I=await ms(T,P);f.visitModule(I)}catch{let I=new jt,M=d;I.visit(u,M),f.calls=I.calls,f.apiCalls=I.apiCalls,f.imports=I.imports}else{let T=new jt;T.visit(u,d),f.calls=T.calls,f.apiCalls=T.apiCalls,f.imports=T.imports}}}else f=new jt,f.visit(u,d);S.info({file:fe.basename(s),calls:f.calls.size,apiCalls:f.apiCalls.length,depth:r},"Analyzed file");let _=Math.max(0,Lt-o.count),g=Math.max(2,Math.min(10,Math.floor(_/(r<=2?3:5)))),b=f.apiCalls.slice(0,g);f.apiCalls.length>g&&(o.pruned=!0);for(let P of b){if(o.count>=Lt)break;if(o.count++,P.method==="PUBSUB"){let M={type:"event_trigger",name:`PubSub Event: ${P.url}`,details:"Detected via PubSub client usage",children:[]};e.children.push(M);let N=P.url.toLowerCase();if(uu.has(N)){M.children.push({type:"subscriber",name:"PubSub fan-out omitted",details:"Generic publish call without concrete event/action; skipping global subscriber expansion to avoid false links.",children:[]});continue}let $=n.exports.findByNameGlobal(P.url).concat(n.exports.findByMethodName(P.url));if(P.url.length>10){let L=P.url.replace(/To[A-Z][a-zA-Z]+$/,"");if(L!==P.url){let A=n.exports.findByNameGlobal(L).concat(n.exports.findByMethodName(L));$.push(...A)}}let W=new Set;for(let L of $.slice(0,au)){if(W.has(L.file_path)||L.file_path===s)continue;if(W.add(L.file_path),o.count>=Lt)break;o.count++;let A={type:"subscriber",name:`${L.name} (${fe.basename(L.file_path)})`,path:fe.relative(t,L.file_path),line:L.start_line,details:"Potential Subscriber / Handler",children:[]};M.children.push(A),$t.existsSync(L.file_path)&&!i.has(L.file_path)&&(i.add(L.file_path),await Bt(L.file_path,A,t,n,i,r+1,o,a))}continue}let E={type:"api_call",name:`${P.method} ${P.url}`,details:"Detected via string literal analysis",children:[]};e.children.push(E);let I=ha(n,P.url,P.method).slice(0,ou);for(let M of I){if(fu(M.file_path,s))continue;if(o.count>=Lt)break;o.count++;let N={type:"route",name:M.signature||"Route Handler",path:M.file_path,line:M.start_line,children:[]};if(E.children.push(N),$t.existsSync(M.file_path)&&!i.has(M.file_path)&&(i.add(M.file_path),await Bt(M.file_path,N,t,n,i,r+1,o,a)),M.capabilities)try{let $=JSON.parse(M.capabilities);if($.handler){let[W,L]=$.handler.split("@");if(W){let H=W.split("\\").pop();if(H){let F=n.exports.findClassByName(H);if(F){let v=n.exports.findByNameAndFile(L||"",F.file_path),C,B=F.start_line;v.length>0&&(C=wi(F.file_path,{start:v[0].start_line,end:v[0].end_line},L||"",a),C||(C={start:v[0].start_line,end:v[0].end_line}),B=C.start);let j={type:"component",name:`${H}${L?" :: "+L:""}`,path:fe.relative(t,F.file_path),line:B,details:"Controller Logic (Macro IR)",children:[]};N.children.push(j),i.has(F.file_path+(L?`:${L}`:""))||(i.add(F.file_path+(L?`:${L}`:"")),await Bt(F.file_path,j,t,n,i,r+1,o,a,C))}}}}}catch{}}}let w=c?c.start-1:0,x=_u(u,w).slice(0,cu);for(let P of x){if(o.count>=Lt)break;o.count++,e.children.push({type:"data_flow",name:`${P.symbol} handoff`,line:P.toLine,details:`assigned @L${P.fromLine} \u2192 used @L${P.toLine}`,children:[]})}let R=f.calls,k=Array.from(R).sort(),D=bu(r,o.count),U=k.slice(0,D);k.length>D&&(o.pruned=!0);for(let P of U)if(f.imports.has(P)){let E=f.imports.get(P);if(!E.startsWith(".")){if(["react","react-dom"].includes(E))continue;e.children.push({type:"function",name:P,details:`External: ${E}`,children:[]});continue}let T=Tt(E,s,t);if(T&&$t.existsSync(T)){let I=n.exports.findByNameAndFile(P,T),M=I.length>0?I[0]:null,N=M?`${T}:${M.name}`:T;if(i.has(N))e.children.push({type:"function",name:P,details:"Circular / Already Visited",path:fe.relative(t,T),line:M?.start_line,children:[]});else{i.add(N);let $={type:M?"component":"file",name:P,details:M?`Imported symbol from ${fe.basename(T)}`:`Imported from ${fe.basename(T)}`,path:fe.relative(t,T),line:M?.start_line,children:[]};e.children.push($);let W=M?wi(T,{start:M.start_line,end:M.end_line},P,a):void 0;await Bt(T,$,t,n,i,r+1,o,a,W)}}}else if(!["log","info","error","warn","print"].includes(P)&&!gu(P)){let E=n.exports.findByNameGlobal(P);if(E.length===0){let T=P.split(/(?:\.|->|::)+/);if(T.length>1){let I=T[0]?.replace(/^\$+/,"").toLowerCase(),M=T[T.length-1];!ya.has(M)&&!(I&&ga.has(I))&&(E=n.exports.findByMethodName(M))}}if(E.length>0){let T=E.find(M=>M.file_path===s),I=T||(E.length===1?E[0]:null);if(I){let M=`${I.file_path}:${I.name}`;if(!i.has(M)){i.add(M);let N={type:"component",name:P,details:`Resolved via global index${T?" (local)":""}`,path:fe.relative(t,I.file_path),line:wi(I.file_path,{start:I.start_line,end:I.end_line},P,a)?.start,children:[]};e.children.push(N);let $=wi(I.file_path,{start:I.start_line,end:I.end_line},P,a)||{start:I.start_line,end:I.end_line};await Bt(I.file_path,N,t,n,i,r+1,o,a,$)}}}}}catch(p){S.error({filePath:s,error:p.message},"Trace analysis failed"),e.children.push({type:"function",name:"Error",details:p.message,children:[]})}}async function Sa(s,e){let t=xi.resolve(e.dir),n=xi.isAbsolute(s)?s:xi.resolve(t,s);await Y(async()=>{pe("Execution Trace");let i=Re();i.start(`Tracing ${y.cyan(e.symbolName||xi.basename(n))}...`);try{let r=await Ea({repoPath:t,filePath:n,symbolName:e.symbolName});i.stop("Trace complete."),r.isError?console.error(y.red(r.content[0].text)):se("Flow Results",r.content[0].text,"magenta")}catch(r){throw i.stop(`Trace failed: ${r.message}`),r}finally{await Q(t)}})}import vu from"path";V();Gt();q();import{execSync as xa}from"child_process";import xu from"path";var vi=S.child({module:"shadow-trace"}),qt=class{intentLogs;exports;repoPath;hologramService;constructor(e){let{intentLogs:t,exports:n}=O.getInstance(e);this.intentLogs=t,this.exports=n,this.repoPath=e,this.hologramService=new Se(e)}analyzeGhostChanges(e){let t=e?`${e}..HEAD`:"HEAD~1..HEAD",n=[];try{let r=xa(`git diff --name-only ${t}`,{cwd:this.repoPath,encoding:"utf-8"}).split(`
-`).filter(o=>o.trim()!=="");if(r.length===0)return;vi.info({files:r.length,range:t},"Initiating Shadow Trace analysis...");for(let o of r){let a=xu.join(this.repoPath,o),l=xa(`git diff -U0 ${t} -- ${o}`,{cwd:this.repoPath,encoding:"utf-8"}).matchAll(/@@ -(\d+)(?:,\d+)? \+(\d+)(?:,\d+)? @@/g);for(let p of l){let u=parseInt(p[2],10),d=this.exports.findAtLine(a,u);d&&(this.intentLogs.create({mission_id:0,file_path:a,symbol_id:d.id,type:"discovery",content:`Shadow Trace: Modified externally in ${t}`,confidence:.8,symbol_name:d.name,signature:d.signature,commit_sha:null}),vi.debug({symbol:d.name},"Logged ghost change"),n.push({from:"external",to:`${o}:${d.name}`,pattern:"git-delta",confidence:.8}))}}n.length>0&&this.hologramService.updateGhostBridges(n),vi.info("Shadow Trace complete.")}catch(i){vi.warn({err:i.message},"Shadow Trace failed: git diff error.")}}};V();import{execSync as Vt}from"child_process";var Ti=class{constructor(e,t="refs/notes/shadow"){this.repoPath=e;this.ref=t}addNote(e,t){try{Vt(`git notes --ref ${this.ref} add -f -m '${t.replace(/'/g,"'\\''")}' ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(n){throw new Error(`Failed to add git note to ${e}: ${n.message}`)}}getNote(e){try{return Vt(`git notes --ref ${this.ref} show ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim()}catch{return null}}listNotes(){let e=new Map;try{let t=Vt(`git notes --ref ${this.ref} list`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim();if(!t)return e;let n=t.split(`
-`);for(let i of n){let[r,o]=i.split(" ");if(o){let a=this.getNote(o);a&&e.set(o,a)}}}catch{}return e}removeNote(e){try{Vt(`git notes --ref ${this.ref} remove ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}push(e="origin"){try{Vt(`git push ${e} ${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(t){throw new Error(`Failed to push git notes to ${e}: ${t.message}`)}}fetch(e="origin"){try{Vt(`git fetch ${e} ${this.ref}:${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}};q();gn();var Jt=S.child({module:"persistence-service"}),Fe=class{gitNotes;repoPath;constructor(e){this.repoPath=e,this.gitNotes=new Ti(e)}async syncMissionToGitNotes(e){let{missions:t,intentLogs:n}=O.getInstance(this.repoPath),i=t.findById(e);if(!i)throw new Error(`Mission ${e} not found`);if(!i.commit_sha){Jt.info({missionId:e},"Skipping Git Notes sync because mission has no commit_sha yet");return}Jt.info({missionId:e,commitSha:i.commit_sha},"Syncing mission to Git Notes");let r=t.getArtifacts(e),o=n.findByMission(e,1e3),a=o.find(p=>p.type==="adr"),c=o.filter(p=>p.type==="decision").map(p=>({content:p.content,symbol_name:p.symbol_name,created_at:p.created_at})),l={version:"1.0",mission:{name:i.name,goal:i.goal,status:i.status,strategy_graph:i.strategy_graph,git_branch:i.git_branch,commit_sha:i.commit_sha,parent_id:i.parent_id,verification_context:i.verification_context,outcome_contract:i.outcome_contract,created_at:i.created_at,updated_at:i.updated_at},artifacts:r,adr:a?a.content:null,decisions:c};this.gitNotes.addNote(i.commit_sha,JSON.stringify(l,null,2))}async syncAllToGitNotes(){let{missions:e}=O.getInstance(this.repoPath),t=e.findActive(),n=e.findRecentCompleted(10),i=[...t,...n];for(let r of i)try{await this.syncMissionToGitNotes(r.id)}catch(o){Jt.error({missionId:r.id,...ye(o)},"Failed to sync mission")}}async recoverFromGitNotes(){let e=this.gitNotes.listNotes(),{missions:t,intentLogs:n}=O.getInstance(this.repoPath),i=0,r=0;for(let[o,a]of e.entries())try{let c=JSON.parse(a);if(c.version!=="1.0")continue;if(t.findByCommitShas([o]).some(d=>d.name===c.mission.name)){Jt.debug({commitSha:o,missionName:c.mission.name},"Mission already exists, skipping recovery");continue}let u=t.create({name:c.mission.name,goal:c.mission.goal,status:c.mission.status,strategy_graph:c.mission.strategy_graph,git_branch:c.mission.git_branch,commit_sha:o,parent_id:c.mission.parent_id,verification_context:c.mission.verification_context,outcome_contract:c.mission.outcome_contract});if(i++,c.adr&&(n.create({mission_id:Number(u),symbol_id:null,file_path:null,type:"adr",content:c.adr,confidence:1,symbol_name:null,signature:null,commit_sha:o}),r++),c.decisions&&c.decisions.length>0)for(let d of c.decisions)n.create({mission_id:Number(u),symbol_id:null,file_path:null,type:"decision",content:d.content,confidence:1,symbol_name:d.symbol_name,signature:null,commit_sha:o}),r++;Jt.info({commitSha:o,missionName:c.mission.name,logsRecovered:r},"Re-hydrated mission from Git Notes")}catch(c){Jt.error({commitSha:o,...ye(c)},"Failed to parse Git Note for recovery")}return{missionsRecovered:i,logsRecovered:r}}};V();It();async function va(s){let{repoPath:e,enableContextPivot:t,enableMergeSentinel:n}=s;try{await X(e),new qt(e).analyzeGhostChanges();let r=new qe(e),o=r.detectAndRepairShifts(),a=r.syncLifecycle({enableContextPivot:t,enableMergeSentinel:n}),l=await new Fe(e).recoverFromGitNotes(),{HologramService:p}=await Promise.resolve().then(()=>(Gt(),wa)),u=new p(e),d=mt(O.getInstance(e),e);u.updateTopography(d);let h=u.computeGravityZones();u.updateGravityZones(h);let m="Shadow Sync complete. Code changes indexed and intent logs updated.";return m+=`
+}`,$=await Is(I,M);f.visitModule($)}catch{let $=new nn,P=d;$.visit(u,P),f.calls=$.calls,f.apiCalls=$.apiCalls,f.imports=$.imports}else{let I=new nn;I.visit(u,d),f.calls=I.calls,f.apiCalls=I.apiCalls,f.imports=I.imports}}}else f=new nn,f.visit(u,d);w.info({file:Se.basename(s),calls:f.calls.size,apiCalls:f.apiCalls.length,depth:r},"Analyzed file");let S=Math.max(0,jt-o.count),y=Math.max(2,Math.min(10,Math.floor(S/(r<=2?3:5)))),_=f.apiCalls.slice(0,y);f.apiCalls.length>y&&(o.pruned=!0);for(let M of _){if(o.count>=jt)break;if(o.count++,M.method==="PUBSUB"){let P={type:"event_trigger",name:`PubSub Event: ${M.url}`,details:"Detected via PubSub client usage",children:[]};e.children.push(P);let U=M.url.toLowerCase();if(Au.has(U)){P.children.push({type:"subscriber",name:"PubSub fan-out omitted",details:"Generic publish call without concrete event/action; skipping global subscriber expansion to avoid false links.",children:[]});continue}let A=n.exports.findByNameGlobal(M.url).concat(n.exports.findByMethodName(M.url));if(M.url.length>10){let L=M.url.replace(/To[A-Z][a-zA-Z]+$/,"");if(L!==M.url){let D=n.exports.findByNameGlobal(L).concat(n.exports.findByMethodName(L));A.push(...D)}}let H=new Set;for(let L of A.slice(0,Cu)){if(H.has(L.file_path)||L.file_path===s)continue;if(H.add(L.file_path),o.count>=jt)break;o.count++;let D={type:"subscriber",name:`${L.name} (${Se.basename(L.file_path)})`,path:Se.relative(t,L.file_path),line:L.start_line,details:"Potential Subscriber / Handler",children:[]};P.children.push(D),Gt.existsSync(L.file_path)&&!i.has(L.file_path)&&(i.add(L.file_path),await sn(L.file_path,D,t,n,i,r+1,o,a))}continue}let v={type:"api_call",name:`${M.method} ${M.url}`,details:"Detected via string literal analysis",children:[]};e.children.push(v);let $=Wa(n,M.url,M.method).slice(0,ku);for(let P of $){if(Du(P.file_path,s))continue;if(o.count>=jt)break;o.count++;let U={type:"route",name:P.signature||"Route Handler",path:P.file_path,line:P.start_line,children:[]};if(v.children.push(U),Gt.existsSync(P.file_path)&&!i.has(P.file_path)&&(i.add(P.file_path),await sn(P.file_path,U,t,n,i,r+1,o,a)),P.capabilities)try{let A=JSON.parse(P.capabilities);if(A.handler){let[H,L]=A.handler.split("@");if(H){let J=H.split("\\").pop();if(J){let z=n.exports.findClassByName(J);if(z){let g=n.exports.findByNameAndFile(L||"",z.file_path),x,O=z.start_line;g.length>0&&(x=Ni(z.file_path,{start:g[0].start_line,end:g[0].end_line},L||"",a),x||(x={start:g[0].start_line,end:g[0].end_line}),O=x.start);let C={type:"component",name:`${J}${L?" :: "+L:""}`,path:Se.relative(t,z.file_path),line:O,details:"Controller Logic (Macro IR)",children:[]};U.children.push(C),i.has(z.file_path+(L?`:${L}`:""))||(i.add(z.file_path+(L?`:${L}`:"")),await sn(z.file_path,C,t,n,i,r+1,o,a,x))}}}}}catch{}}}let E=c?c.start-1:0,R=zu(u,E).slice(0,Iu);for(let M of R){if(o.count>=jt)break;o.count++,e.children.push({type:"data_flow",name:`${M.symbol} handoff`,line:M.toLine,details:`assigned @L${M.fromLine} \u2192 used @L${M.toLine}`,children:[]})}let T=f.calls,k=Array.from(T).sort(),F=Wu(r,o.count),B=k.slice(0,F);k.length>F&&(o.pruned=!0);for(let M of B)if(f.imports.has(M)){let v=f.imports.get(M);if(!v.startsWith(".")){if(["react","react-dom"].includes(v))continue;e.children.push({type:"function",name:M,details:`External: ${v}`,children:[]});continue}let I=Wt(v,s,t);if(I&&Gt.existsSync(I)){let $=n.exports.findByNameAndFile(M,I),P=$.length>0?$[0]:null,U=P?`${I}:${P.name}`:I;if(i.has(U))e.children.push({type:"function",name:M,details:"Circular / Already Visited",path:Se.relative(t,I),line:P?.start_line,children:[]});else{i.add(U);let A={type:P?"component":"file",name:M,details:P?`Imported symbol from ${Se.basename(I)}`:`Imported from ${Se.basename(I)}`,path:Se.relative(t,I),line:P?.start_line,children:[]};e.children.push(A);let H=P?Ni(I,{start:P.start_line,end:P.end_line},M,a):void 0;await sn(I,A,t,n,i,r+1,o,a,H)}}}else if(!["log","info","error","warn","print"].includes(M)&&!Ou(M)){let v=n.exports.findByNameGlobal(M);if(v.length===0){let I=M.split(/(?:\.|->|::)+/);if(I.length>1){let $=I[0]?.replace(/^\$+/,"").toLowerCase(),P=I[I.length-1];!Ba.has(P)&&!($&&Ha.has($))&&(v=n.exports.findByMethodName(P))}}if(v.length>0){let I=v.find(P=>P.file_path===s),$=I||(v.length===1?v[0]:null);if($){let P=`${$.file_path}:${$.name}`;if(!i.has(P)){i.add(P);let U={type:"component",name:M,details:`Resolved via global index${I?" (local)":""}`,path:Se.relative(t,$.file_path),line:Ni($.file_path,{start:$.start_line,end:$.end_line},M,a)?.start,children:[]};e.children.push(U);let A=Ni($.file_path,{start:$.start_line,end:$.end_line},M,a)||{start:$.start_line,end:$.end_line};await sn($.file_path,U,t,n,i,r+1,o,a,A)}}}}}catch(p){w.error({filePath:s,error:p.message},"Trace analysis failed"),e.children.push({type:"function",name:"Error",details:p.message,children:[]})}}async function qa(s,e){let t=Di.resolve(e.dir),n=Di.isAbsolute(s)?s:Di.resolve(t,s);await Q(async()=>{ge("Execution Trace");let i=Oe();i.start(`Tracing ${b.cyan(e.symbolName||Di.basename(n))}...`);try{let r=await Ga({repoPath:t,filePath:n,symbolName:e.symbolName});i.stop("Trace complete."),r.isError?console.error(b.red(r.content[0].text)):ue("Flow Results",r.content[0].text,"magenta")}catch(r){throw i.stop(`Trace failed: ${r.message}`),r}finally{await ne(t)}})}import Gu from"path";Y();rn();G();import{execSync as Ja}from"child_process";import ju from"path";var Oi=w.child({module:"shadow-trace"}),on=class{intentLogs;exports;repoPath;hologramService;constructor(e){let{intentLogs:t,exports:n}=N.getInstance(e);this.intentLogs=t,this.exports=n,this.repoPath=e,this.hologramService=new Ae(e)}analyzeGhostChanges(e){let t=e?`${e}..HEAD`:"HEAD~1..HEAD",n=[];try{let r=Ja(`git diff --name-only ${t}`,{cwd:this.repoPath,encoding:"utf-8"}).split(`
+`).filter(o=>o.trim()!=="");if(r.length===0)return;Oi.info({files:r.length,range:t},"Initiating Shadow Trace analysis...");for(let o of r){let a=ju.join(this.repoPath,o),l=Ja(`git diff -U0 ${t} -- ${o}`,{cwd:this.repoPath,encoding:"utf-8"}).matchAll(/@@ -(\d+)(?:,\d+)? \+(\d+)(?:,\d+)? @@/g);for(let p of l){let u=parseInt(p[2],10),d=this.exports.findAtLine(a,u);d&&(this.intentLogs.create({mission_id:0,file_path:a,symbol_id:d.id,type:"discovery",content:`Shadow Trace: Modified externally in ${t}`,confidence:.8,symbol_name:d.name,signature:d.signature,commit_sha:null}),Oi.debug({symbol:d.name},"Logged ghost change"),n.push({from:"external",to:`${o}:${d.name}`,pattern:"git-delta",confidence:.8}))}}n.length>0&&this.hologramService.updateGhostBridges(n),Oi.info("Shadow Trace complete.")}catch(i){Oi.warn({err:i.message},"Shadow Trace failed: git diff error.")}}};Y();import{execSync as an}from"child_process";var Fi=class{constructor(e,t="refs/notes/shadow"){this.repoPath=e;this.ref=t}addNote(e,t){try{an(`git notes --ref ${this.ref} add -f -m '${t.replace(/'/g,"'\\''")}' ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(n){throw new Error(`Failed to add git note to ${e}: ${n.message}`)}}getNote(e){try{return an(`git notes --ref ${this.ref} show ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim()}catch{return null}}listNotes(){let e=new Map;try{let t=an(`git notes --ref ${this.ref} list`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim();if(!t)return e;let n=t.split(`
+`);for(let i of n){let[r,o]=i.split(" ");if(o){let a=this.getNote(o);a&&e.set(o,a)}}}catch{}return e}removeNote(e){try{an(`git notes --ref ${this.ref} remove ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}push(e="origin"){try{an(`git push ${e} ${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(t){throw new Error(`Failed to push git notes to ${e}: ${t.message}`)}}fetch(e="origin"){try{an(`git fetch ${e} ${this.ref}:${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}};G();Cn();var cn=w.child({module:"persistence-service"}),Ze=class{gitNotes;repoPath;constructor(e){this.repoPath=e,this.gitNotes=new Fi(e)}async syncMissionToGitNotes(e){let{missions:t,intentLogs:n}=N.getInstance(this.repoPath),i=t.findById(e);if(!i)throw new Error(`Mission ${e} not found`);if(!i.commit_sha){cn.info({missionId:e},"Skipping Git Notes sync because mission has no commit_sha yet");return}cn.info({missionId:e,commitSha:i.commit_sha},"Syncing mission to Git Notes");let r=t.getArtifacts(e),o=n.findByMission(e,1e3),a=o.find(p=>p.type==="adr"),c=o.filter(p=>p.type==="decision").map(p=>({content:p.content,symbol_name:p.symbol_name,created_at:p.created_at})),l={version:"1.0",mission:{name:i.name,goal:i.goal,status:i.status,strategy_graph:i.strategy_graph,git_branch:i.git_branch,commit_sha:i.commit_sha,parent_id:i.parent_id,verification_context:i.verification_context,outcome_contract:i.outcome_contract,created_at:i.created_at,updated_at:i.updated_at},artifacts:r,adr:a?a.content:null,decisions:c};this.gitNotes.addNote(i.commit_sha,JSON.stringify(l,null,2))}async syncAllToGitNotes(){let{missions:e}=N.getInstance(this.repoPath),t=e.findActive(),n=e.findRecentCompleted(10),i=[...t,...n];for(let r of i)try{await this.syncMissionToGitNotes(r.id)}catch(o){cn.error({missionId:r.id,...Re(o)},"Failed to sync mission")}}async recoverFromGitNotes(){let e=this.gitNotes.listNotes(),{missions:t,intentLogs:n}=N.getInstance(this.repoPath),i=0,r=0;for(let[o,a]of e.entries())try{let c=JSON.parse(a);if(c.version!=="1.0")continue;if(t.findByCommitShas([o]).some(d=>d.name===c.mission.name)){cn.debug({commitSha:o,missionName:c.mission.name},"Mission already exists, skipping recovery");continue}let u=t.create({name:c.mission.name,goal:c.mission.goal,status:c.mission.status,strategy_graph:c.mission.strategy_graph,git_branch:c.mission.git_branch,commit_sha:o,parent_id:c.mission.parent_id,verification_context:c.mission.verification_context,outcome_contract:c.mission.outcome_contract});if(i++,c.adr&&(n.create({mission_id:Number(u),symbol_id:null,file_path:null,type:"adr",content:c.adr,confidence:1,symbol_name:null,signature:null,commit_sha:o}),r++),c.decisions&&c.decisions.length>0)for(let d of c.decisions)n.create({mission_id:Number(u),symbol_id:null,file_path:null,type:"decision",content:d.content,confidence:1,symbol_name:d.symbol_name,signature:null,commit_sha:o}),r++;cn.info({commitSha:o,missionName:c.mission.name,logsRecovered:r},"Re-hydrated mission from Git Notes")}catch(c){cn.error({commitSha:o,...Re(c)},"Failed to parse Git Note for recovery")}return{missionsRecovered:i,logsRecovered:r}}};Y();Ut();async function Ya(s){let{repoPath:e,enableContextPivot:t,enableMergeSentinel:n}=s;try{await ie(e),new on(e).analyzeGhostChanges();let r=new it(e),o=r.detectAndRepairShifts(),a=r.syncLifecycle({enableContextPivot:t,enableMergeSentinel:n}),l=await new Ze(e).recoverFromGitNotes(),{HologramService:p}=await Promise.resolve().then(()=>(rn(),Va)),u=new p(e),d=kt(N.getInstance(e),e);u.updateTopography(d);let h=u.computeGravityZones();u.updateGravityZones(h);let m="Shadow Sync complete. Code changes indexed and intent logs updated.";return m+=`
 \u269B\uFE0F Hologram: Refreshed architectural map (${h.length} hotspots).`,o.repaired>0&&(m+=`
 \u2728 Nano-Repair: Fixed ${o.repaired} links.`),m+=`
 \u{1F9ED} Lifecycle: contextPivot=${a.contextPivotEnabled?"on":"off"}, mergeSentinel=${a.mergeSentinelEnabled?"on":"off"}, suspended=${a.suspended}, resumed=${a.resumed}, completed=${a.completed}.`,l.missionsRecovered>0&&(m+=`
-\u{1F9EC} Re-hydration: Recovered ${l.missionsRecovered} missions.`),{content:[{type:"text",text:m}]}}catch(i){return{content:[{type:"text",text:`Error: ${i.message}`}],isError:!0}}}async function Ta(s,e){let t=vu.resolve(s);await Y(async()=>{pe("Shadow Sync");let n=Re();n.start("Synchronizing intelligence lifecycle...");try{let i=await va({repoPath:t,enableContextPivot:e.contextPivot===!0,enableMergeSentinel:e.mergeSentinel===!0});n.stop("Sync complete."),i.isError?console.error(y.red(i.content[0].text)):(console.log(""),console.log(i.content[0].text),console.log(""))}catch(i){throw n.stop(`Sync failed: ${i.message}`),i}finally{await Q(t)}})}It();V();q();Gt();import ka from"path";V();It();Gt();import et from"path";async function Ra(s){let{repoPath:e}=s;await X(e);let t=O.getInstance(e),n=mt(t,e),r=new Se(e).getSnapshot(),o=[],a=[],c=Object.values(n.layers.Entry.topFiles).map(d=>d.path),l=new Set(Object.values(n.layers.Data.topFiles).map(d=>d.path));for(let d of c){let h=et.isAbsolute(d)?d:et.join(e,d),m=t.imports.findByFile(h);for(let f of m)f.resolved_path&&l.has(et.relative(e,f.resolved_path))&&o.push(`\u2694\uFE0F LAYER BYPASS: \`${et.relative(e,d)}\` directly imports Data layer \`${et.relative(e,f.resolved_path)}\`. Should go through Logic.`)}let p=r.gravity?.hotspots||[];for(let d of p){let h=Ct(d.filePath,t);(h.layer==="Utility"||h.layer==="Unknown")&&d.gravity>50&&a.push(`\u{1F6A8} GRAVITY ANOMALY: \`${et.relative(e,d.filePath)}\` has high gravity (${d.gravity.toFixed(0)}) but is classified as ${h.layer}. Consider promoting to Core Logic.`)}for(let d of c){let h=et.isAbsolute(d)?d:et.join(e,d),m=t.exports.findByFile(h);m.length>10&&a.push(`\u{1F388} ENTRY BLOAT: \`${et.relative(e,d)}\` exports ${m.length} symbols. Entry handlers should be thin interfaces.`)}let u=`# \u{1F575}\uFE0F Architectural Scout Report
+\u{1F9EC} Re-hydration: Recovered ${l.missionsRecovered} missions.`),{content:[{type:"text",text:m}]}}catch(i){return{content:[{type:"text",text:`Error: ${i.message}`}],isError:!0}}}async function Ka(s,e){let t=Gu.resolve(s);await Q(async()=>{ge("Shadow Sync");let n=Oe();n.start("Synchronizing intelligence lifecycle...");try{let i=await Ya({repoPath:t,enableContextPivot:e.contextPivot===!0,enableMergeSentinel:e.mergeSentinel===!0});n.stop("Sync complete."),i.isError?console.error(b.red(i.content[0].text)):(console.log(""),console.log(i.content[0].text),console.log(""))}catch(i){throw n.stop(`Sync failed: ${i.message}`),i}finally{await ne(t)}})}Ut();Y();G();rn();import Za from"path";Y();Ut();rn();import dt from"path";async function Qa(s){let{repoPath:e}=s;await ie(e);let t=N.getInstance(e),n=kt(t,e),r=new Ae(e).getSnapshot(),o=[],a=[],c=Object.values(n.layers.Entry.topFiles).map(d=>d.path),l=new Set(Object.values(n.layers.Data.topFiles).map(d=>d.path));for(let d of c){let h=dt.isAbsolute(d)?d:dt.join(e,d),m=t.imports.findByFile(h);for(let f of m)f.resolved_path&&l.has(dt.relative(e,f.resolved_path))&&o.push(`\u2694\uFE0F LAYER BYPASS: \`${dt.relative(e,d)}\` directly imports Data layer \`${dt.relative(e,f.resolved_path)}\`. Should go through Logic.`)}let p=r.gravity?.hotspots||[];for(let d of p){let h=Bt(d.filePath,t);(h.layer==="Utility"||h.layer==="Unknown")&&d.gravity>50&&a.push(`\u{1F6A8} GRAVITY ANOMALY: \`${dt.relative(e,d.filePath)}\` has high gravity (${d.gravity.toFixed(0)}) but is classified as ${h.layer}. Consider promoting to Core Logic.`)}for(let d of c){let h=dt.isAbsolute(d)?d:dt.join(e,d),m=t.exports.findByFile(h);m.length>10&&a.push(`\u{1F388} ENTRY BLOAT: \`${dt.relative(e,d)}\` exports ${m.length} symbols. Entry handlers should be thin interfaces.`)}let u=`# \u{1F575}\uFE0F Architectural Scout Report
 
 `;return o.length===0&&a.length===0?u+=`\u2705 No significant architectural drift detected. The structure remains "Legit".
 `:(o.length>0&&(u+=`## \u274C Structural Violations
@@ -692,128 +747,128 @@ ${u}
 `),a.length>0&&(u+=`## \u26A0\uFE0F Architectural Warnings
 `,a.forEach(d=>u+=`- ${d}
 `),u+=`
-`)),{content:[{type:"text",text:u}]}}async function Ca(s,e,t){let n=e?ka.resolve(process.cwd(),e):process.cwd();if(s==="init"){S.info('Running full initialization (same as "index --force")...'),await X(n,void 0,!0,!0);return}if(s==="tree"){S.info('For tree view, please use the "tree" command.');return}if(s==="topography"){await X(n);let i=O.getInstance(n),r=mt(i,n);console.log(`
-\u{1F3D7}\uFE0F  Architecture Summary for ${ka.basename(n)}
+`)),{content:[{type:"text",text:u}]}}async function Xa(s,e,t){let n=e?Za.resolve(process.cwd(),e):process.cwd();if(s==="init"){w.info('Running full initialization (same as "index --force")...'),await ie(n,void 0,!0,!0);return}if(s==="tree"){w.info('For tree view, please use the "tree" command.');return}if(s==="topography"){await ie(n);let i=N.getInstance(n),r=kt(i,n);console.log(`
+\u{1F3D7}\uFE0F  Architecture Summary for ${Za.basename(n)}
 `),console.log(`Detected Pattern: **${r.pattern}** (Confidence: ${r.patternConfidence.toFixed(0)}%)`),r.insights.length>0&&(console.log(`
 Insights:`),r.insights.forEach(l=>console.log(`- ${l}`))),console.log(`
 Layer Distribution:`);let o=["Entry","Logic","Data","Utility","Infrastructure","Test","Types","Unknown"],a=Object.values(r.layers).reduce((l,p)=>l+p.count,0),c=l=>{switch(l){case"Entry":return"\u{1F6AA}";case"Logic":return"\u2699\uFE0F";case"Data":return"\u{1F4BE}";case"Utility":return"\u{1F527}";case"Infrastructure":return"\u{1F3D7}\uFE0F";case"Test":return"\u{1F9EA}";case"Types":return"\u{1F4DD}";default:return"\u2753"}};o.forEach(l=>{let p=r.layers[l],u=a>0?(p.count/a*100).toFixed(1):"0.0";console.log(`${c(l)} ${l.padEnd(14)} | ${p.count.toString().padStart(5)} files | ${u}%`)}),console.log(`
 Top Files by Layer:`),o.forEach(l=>{let p=r.layers[l];p.count!==0&&(console.log(`
-${c(l)} ${l}`),p.topFiles.forEach(u=>{console.log(`  - ${u.path} (${u.confidence}% conf)`),u.signals.length>0&&console.log(`    \u2514\u2500 ${u.signals.slice(0,1).join(", ")}`)}))});return}if(s==="scout"){let i=await Ra({repoPath:n});console.log(i.content[0].text);return}if(s==="hologram"){let i=new Se(n);console.log(JSON.stringify(i.getSnapshot(),null,2));return}S.error(`Unknown recon mode: ${s}. Available: init, topography, scout, hologram`)}import _n from"path";V();var ht=class s{static extractKeywords(e){if(!e)return[];let t=new Set(["the","and","for","with","from","this","that","into","onto","http","https","www","com","org","net","api"]),i=e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(r=>r.trim()).filter(r=>r.length>2&&!t.has(r));return Array.from(new Set(i))}static calculateKeywordCoverageFromKeywords(e,t){if(!e||!t||t.length===0)return 0;let n=e.toLowerCase();return t.filter(r=>n.includes(r)).length/t.length}static calculateKeywordCoverage(e,t){return s.calculateKeywordCoverageFromKeywords(e,s.extractKeywords(t))}static extractSnippet(e,t,n=300){if(!e||!t)return"";let i=s.extractKeywords(t);if(i.length===0)return e.slice(0,n)+"...";let r=e.split(`
-`),o=new Array(r.length).fill(0);for(let d=0;d<r.length;d++){let h=r[d].toLowerCase(),m=0,f=0;for(let _ of i)h.includes(_)&&(m++,f++);(h.includes("export ")||h.includes("class ")||h.includes("function ")||h.includes("interface "))&&(m+=1),o[d]=f*10+m}let a=0,c=-1,l=5;for(let d=0;d<=r.length-l;d++){let h=0;for(let m=0;m<l;m++)h+=o[d+m];h>c&&(c=h,a=d)}if(c<=0)return e.slice(0,n).trim()+"...";let u=r.slice(a,a+l).join(`
+${c(l)} ${l}`),p.topFiles.forEach(u=>{console.log(`  - ${u.path} (${u.confidence}% conf)`),u.signals.length>0&&console.log(`    \u2514\u2500 ${u.signals.slice(0,1).join(", ")}`)}))});return}if(s==="scout"){let i=await Qa({repoPath:n});console.log(i.content[0].text);return}if(s==="hologram"){let i=new Ae(n);console.log(JSON.stringify(i.getSnapshot(),null,2));return}w.error(`Unknown recon mode: ${s}. Available: init, topography, scout, hologram`)}import Mn from"path";Y();var Ct=class s{static extractKeywords(e){if(!e)return[];let t=new Set(["the","and","for","with","from","this","that","into","onto","http","https","www","com","org","net","api"]),i=e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(r=>r.trim()).filter(r=>r.length>2&&!t.has(r));return Array.from(new Set(i))}static calculateKeywordCoverageFromKeywords(e,t){if(!e||!t||t.length===0)return 0;let n=e.toLowerCase();return t.filter(r=>n.includes(r)).length/t.length}static calculateKeywordCoverage(e,t){return s.calculateKeywordCoverageFromKeywords(e,s.extractKeywords(t))}static extractSnippet(e,t,n=300){if(!e||!t)return"";let i=s.extractKeywords(t);if(i.length===0)return e.slice(0,n)+"...";let r=e.split(`
+`),o=new Array(r.length).fill(0);for(let d=0;d<r.length;d++){let h=r[d].toLowerCase(),m=0,f=0;for(let S of i)h.includes(S)&&(m++,f++);(h.includes("export ")||h.includes("class ")||h.includes("function ")||h.includes("interface "))&&(m+=1),o[d]=f*10+m}let a=0,c=-1,l=5;for(let d=0;d<=r.length-l;d++){let h=0;for(let m=0;m<l;m++)h+=o[d+m];h>c&&(c=h,a=d)}if(c<=0)return e.slice(0,n).trim()+"...";let u=r.slice(a,a+l).join(`
 `).trim();return a>0&&(u=`...
 `+u),a+l<r.length&&(u=u+`
-...`),u.length>n?u.slice(0,n)+"...":u}static calculateLexicalScore(e,t){if(!e||!t)return 0;let n=s.extractKeywords(t);if(n.length===0)return 0;let i=0,r=e.toLowerCase();for(let o of n)if(r.includes(o)){i+=1;let a=new RegExp(`\\b${o}`,"gi"),c=r.match(a);c&&(i+=Math.min(c.length*.2,2)),new RegExp(`(class|function|export|interface|enum|type)\\s+${o}`,"i").test(e)&&(i+=1.5)}return i/n.length}};Ae();V();q();var ft=S.child({module:"clean-sweep"}),Ps=class{files;intentLogs;constructor(e){let{files:t,intentLogs:n}=O.getInstance(e);this.files=t,this.intentLogs=n}pruneOrphans(){ft.info("Starting orphan pruning...");let e=0,t=0,n=this.intentLogs.findOrphans();ft.info({orphanCount:n.length},"Found orphaned logs");for(let o of n)o.file_path&&this.files.exists(o.file_path)?(this.intentLogs.markAsLapsed(o.id),t++,ft.debug({logId:o.id,symbolName:o.symbol_name},"Converted to lapsed intent")):(this.intentLogs.delete(o.id),e++,ft.debug({logId:o.id},"Deleted orphaned log"));let i=this.intentLogs.findLogsForMissingFiles();for(let o of i)this.intentLogs.delete(o.id),e++;let r=this.intentLogs.findRecentDecisionActivity(1e3).length;return ft.info({deleted:e,converted:t},"Orphan pruning complete"),{deleted:e,converted:t,retained:r}}},Ms=class{lambda;constructor(e=.01){this.lambda=e}calculateScore(e,t){let i=(Math.floor(Date.now()/1e3)-t)/(3600*24),r=Math.exp(-this.lambda*i);return e*r}scoreResults(e){return e.map(t=>({...t,decayed_score:this.calculateScore(t.score,t.created_at)}))}},Ns=class{missions;constructor(e){let{missions:t}=O.getInstance(e);this.missions=t}findColdMissions(){let e=Math.floor(Date.now()/1e3)-604800,t=this.missions.findColdMissions(e,10);return ft.info({count:t.length},"Found cold missions for compaction"),t}markDistilled(e){this.missions.update(e,{status:"distilled"})}},Ri=class{pruner;scorer;compactor;constructor(e){this.pruner=new Ps(e),this.scorer=new Ms,this.compactor=new Ns(e)}runMaintenance(){ft.info("Initiating Clean Sweep maintenance protocol...");let e=this.pruner.pruneOrphans(),t=this.compactor.findColdMissions();return ft.info("Clean Sweep maintenance complete"),{pruning:e,compaction:{eligible:t.length}}}getScorer(){return this.scorer}getCompactor(){return this.compactor}};V();q();var Ia=S.child({module:"lineage-service"}),yn=class{repoPath;constructor(e){this.repoPath=e}getAncestorMissionIds(e=50){try{let t=So(this.repoPath,e);if(t.length===0)return[];let{missions:n}=O.getInstance(this.repoPath),r=n.findByCommitShas(t).map(o=>o.id);return r.length>0&&Ia.debug({count:r.length},"Identified ancestor missions for gravity bleed"),r}catch(t){return Ia.warn({err:t.message},"Failed to identify ancestor missions"),[]}}};var Tu={Solid:1,Liquid:.8,Virtual:.4,Intel:.2,Phantom:.05},We=class{static classify(e,t){let n=e.toLowerCase();if(t?.content){let i=t.content;if(i.includes("describe(")||i.includes("test(")||i.includes("it(")||i.includes("expect(")||i.includes('from "@jest/globals"')||i.includes('from "vitest"'))return"Virtual"}return t?.exports&&(t.exports.some(r=>r.kind==="ClassDeclaration"||r.kind==="Class")||t.exports.length>5),n.includes("/dist/")||n.includes("/build/")||n.includes("/.generated/")||n.includes("/node_modules/")||n.endsWith(".map")||n.endsWith(".log")?"Phantom":n.includes("/test/")||n.includes("/tests/")||n.includes("/__tests__/")||n.includes("/__mocks__/")||n.includes(".spec.")||n.includes(".test.")||n.includes("/e2e/")||n.includes("/test-utils/")?"Virtual":n.includes("/examples/")||n.includes("/fixtures/")||n.includes("/mocks/")||n.includes("/stories/")||n.includes("/samples/")||n.includes("/docs/")?"Intel":n.includes("/src/")||n.includes("/lib/")||n.includes("/app/")||n.includes("/core/")||n.includes("/logic/")||n.includes("/domain/")||n.includes("/services/")||n.includes("/controllers/")||n.includes("/handlers/")||n.includes("/repositories/")||n.includes("/models/")||n.includes("/packages/")&&!n.includes("/packages/config/")||n.includes("/backends/")||t?.exports&&(t.exports.some(i=>i.kind==="ClassDeclaration"||i.kind==="Class")||t.exports.length>5)?"Solid":"Liquid"}static mapClassificationToTier(e){let t=e.toLowerCase();return t==="service"||t==="repository"||t==="model"||t==="controller"||t==="handler"||t==="component"||t==="hook"||t==="titanium"||t==="solid"?"Solid":t==="test"||t==="iron"||t==="virtual"?"Virtual":t==="lead"||t==="intel"?"Intel":t==="ghost"||t==="error"||t==="phantom"?"Phantom":"Liquid"}static getMultiplier(e,t){let n=t?this.mapClassificationToTier(t):this.classify(e);return Tu[n]}};q();function Ru(s,e){let t=[];for(let n=0;n<=e.length;n++)t[n]=[n];for(let n=0;n<=s.length;n++)t[0][n]=n;for(let n=1;n<=e.length;n++)for(let i=1;i<=s.length;i++)e.charAt(n-1)===s.charAt(i-1)?t[n][i]=t[n-1][i-1]:t[n][i]=Math.min(t[n-1][i-1]+1,t[n][i-1]+1,t[n-1][i]+1);return t[e.length][s.length]}function ku(s,e){let t=Ru(s.toLowerCase(),e.toLowerCase()),n=Math.max(s.length,e.length);return Math.round((n-t)/n*100)}function La(s){let e=[],t="";for(let n=0;n<s.length;n++){let i=s[n],r=i>="A"&&i<="Z",o=i>="a"&&i<="z";r&&t.length>0?(e.push(t),t=i):o||r?t+=i:t.length>0&&(e.push(t),t="")}return t.length>0&&e.push(t),e}function Cu(s,e){let t=La(e),n=s.toLowerCase();if(t.map(o=>o[0].toLowerCase()).join("")===n)return!0;let r=0;for(let o of t){if(r>=s.length)break;let a=o.toLowerCase();if(a.startsWith(n.slice(r))){r=s.length;break}a[0]===n[r]&&r++}return r===s.length}function Iu(s,e){return La(e).map(i=>i[0].toLowerCase()).join("")===s.toLowerCase()}function Lu(s,e){let t=s.toLowerCase(),n=e.toLowerCase();if(s===e)return{matchType:"exact",score:100};if(t===n)return{matchType:"exact-case-insensitive",score:98};if(n.startsWith(t))return{matchType:"prefix",score:90+s.length/e.length*8};if(n.endsWith(t))return{matchType:"suffix",score:80+s.length/e.length*8};if(n.includes(t)){let r=s.length/e.length,o=n.indexOf(t)/e.length;return{matchType:"substring",score:70+r*10-o*5}}return Iu(s,e)?{matchType:"acronym",score:75}:Cu(s,e)?{matchType:"camel-case",score:65}:{matchType:"levenshtein",score:ku(s,e)*.6}}function bn(s,e,t=50,n=5){let i=[];for(let r of e){let{matchType:o,score:a}=Lu(s,r);if(a>=t){let l={exact:1e3,"exact-case-insensitive":900,prefix:800,suffix:700,substring:600,acronym:550,"camel-case":500,levenshtein:100}[o]+a;i.push({match:r,score:a,matchType:o,rank:l})}}return i.sort((r,o)=>o.rank!==r.rank?o.rank-r.rank:o.score!==r.score?o.score-r.score:r.match.length-o.match.length),i.slice(0,n)}Gt();var gt=class s{constructor(e){this.repoPath=e}get filesRepo(){return O.getInstance(this.repoPath).files}get exportsRepo(){return O.getInstance(this.repoPath).exports}get intentLogsRepo(){return O.getInstance(this.repoPath).intentLogs}static normalizeFileType(e){if(e==null)return;let t=Array.isArray(e)?e:e.split(",").map(n=>n.trim().replace(/^\./,""));return t.filter(Boolean).length?t:void 0}static matchesFilters(e,t,n,i){if(t.fileType?.length){let r=e.replace(/^.*\./,"").toLowerCase();if(!t.fileType.some(o=>o.toLowerCase()===r))return!1}if(t.layer!=null||t.excludeLayers&&t.excludeLayers.length>0){let r=i!=null?We.mapClassificationToTier(i):We.classify(e);if(t.layer!=null&&r!==t.layer||t.excludeLayers?.includes(r))return!1}return!0}async searchByPath(e,t,n,i,r,o=!1){let a=this.extractPathKeywords(e),c=this.isLikelySymbolQuery(e),l=this.filesRepo.findByPathKeywords(a,Math.min((t??50)*(r?ge.FILTERED_QUERY_LIMIT_MULTIPLIER:1),ke.MAX_LIMIT)).map(b=>({...b,source:"path",keywordHits:this.countPathKeywordHits(b.path,a),relevance:this.scorePathResult(b.path,a,"path",c)}));r&&(l=l.filter(b=>s.matchesFilters(b.path,i,b.mtime,b.classification))),c&&a.length>=3&&(l=l.filter(b=>b.source==="symbol"||b.keywordHits>=2));let p=this.findSymbolBackedPaths(e,a,t*3),u=new Set(l.map(b=>b.path));for(let b of p){if(u.has(b))continue;let w=this.filesRepo.findByPath(b);w&&(r&&!s.matchesFilters(w.path,i,w.mtime,w.classification)||(l.push({...w,source:"symbol",keywordHits:this.countPathKeywordHits(w.path,a),relevance:this.scorePathResult(w.path,a,"symbol",c)}),u.add(b)))}l.sort((b,w)=>w.relevance-b.relevance),r||(l=l.slice(0,Math.min(t*4,ke.MAX_LIMIT)));let d=l.length;if(d===0)return{content:[{type:"text",text:`No indexed files match path/filename: "${e}".
+...`),u.length>n?u.slice(0,n)+"...":u}static calculateLexicalScore(e,t){if(!e||!t)return 0;let n=s.extractKeywords(t);if(n.length===0)return 0;let i=0,r=e.toLowerCase();for(let o of n)if(r.includes(o)){i+=1;let a=new RegExp(`\\b${o}`,"gi"),c=r.match(a);c&&(i+=Math.min(c.length*.2,2)),new RegExp(`(class|function|export|interface|enum|type)\\s+${o}`,"i").test(e)&&(i+=1.5)}return i/n.length}};qe();Y();G();var It=w.child({module:"clean-sweep"}),Ys=class{files;intentLogs;constructor(e){let{files:t,intentLogs:n}=N.getInstance(e);this.files=t,this.intentLogs=n}pruneOrphans(){It.info("Starting orphan pruning...");let e=0,t=0,n=this.intentLogs.findOrphans();It.info({orphanCount:n.length},"Found orphaned logs");for(let o of n)o.file_path&&this.files.exists(o.file_path)?(this.intentLogs.markAsLapsed(o.id),t++,It.debug({logId:o.id,symbolName:o.symbol_name},"Converted to lapsed intent")):(this.intentLogs.delete(o.id),e++,It.debug({logId:o.id},"Deleted orphaned log"));let i=this.intentLogs.findLogsForMissingFiles();for(let o of i)this.intentLogs.delete(o.id),e++;let r=this.intentLogs.findRecentDecisionActivity(1e3).length;return It.info({deleted:e,converted:t},"Orphan pruning complete"),{deleted:e,converted:t,retained:r}}},Ks=class{lambda;constructor(e=.01){this.lambda=e}calculateScore(e,t){let i=(Math.floor(Date.now()/1e3)-t)/(3600*24),r=Math.exp(-this.lambda*i);return e*r}scoreResults(e){return e.map(t=>({...t,decayed_score:this.calculateScore(t.score,t.created_at)}))}},Qs=class{missions;constructor(e){let{missions:t}=N.getInstance(e);this.missions=t}findColdMissions(){let e=Math.floor(Date.now()/1e3)-604800,t=this.missions.findColdMissions(e,10);return It.info({count:t.length},"Found cold missions for compaction"),t}markDistilled(e){this.missions.update(e,{status:"distilled"})}},Wi=class{pruner;scorer;compactor;constructor(e){this.pruner=new Ys(e),this.scorer=new Ks,this.compactor=new Qs(e)}runMaintenance(){It.info("Initiating Clean Sweep maintenance protocol...");let e=this.pruner.pruneOrphans(),t=this.compactor.findColdMissions();return It.info("Clean Sweep maintenance complete"),{pruning:e,compaction:{eligible:t.length}}}getScorer(){return this.scorer}getCompactor(){return this.compactor}};Y();G();var ec=w.child({module:"lineage-service"}),In=class{repoPath;constructor(e){this.repoPath=e}getAncestorMissionIds(e=50){try{let t=qo(this.repoPath,e);if(t.length===0)return[];let{missions:n}=N.getInstance(this.repoPath),r=n.findByCommitShas(t).map(o=>o.id);return r.length>0&&ec.debug({count:r.length},"Identified ancestor missions for gravity bleed"),r}catch(t){return ec.warn({err:t.message},"Failed to identify ancestor missions"),[]}}};var qu={Solid:1,Liquid:.8,Virtual:.4,Intel:.2,Phantom:.05},Xe=class{static classify(e,t){let n=e.toLowerCase();if(t?.content){let i=t.content;if(i.includes("describe(")||i.includes("test(")||i.includes("it(")||i.includes("expect(")||i.includes('from "@jest/globals"')||i.includes('from "vitest"'))return"Virtual"}return t?.exports&&(t.exports.some(r=>r.kind==="ClassDeclaration"||r.kind==="Class")||t.exports.length>5),n.includes("/dist/")||n.includes("/build/")||n.includes("/.generated/")||n.includes("/node_modules/")||n.endsWith(".map")||n.endsWith(".log")?"Phantom":n.includes("/test/")||n.includes("/tests/")||n.includes("/__tests__/")||n.includes("/__mocks__/")||n.includes(".spec.")||n.includes(".test.")||n.includes("/e2e/")||n.includes("/test-utils/")?"Virtual":n.includes("/examples/")||n.includes("/fixtures/")||n.includes("/mocks/")||n.includes("/stories/")||n.includes("/samples/")||n.includes("/docs/")?"Intel":n.includes("/src/")||n.includes("/lib/")||n.includes("/app/")||n.includes("/core/")||n.includes("/logic/")||n.includes("/domain/")||n.includes("/services/")||n.includes("/controllers/")||n.includes("/handlers/")||n.includes("/repositories/")||n.includes("/models/")||n.includes("/packages/")&&!n.includes("/packages/config/")||n.includes("/backends/")||t?.exports&&(t.exports.some(i=>i.kind==="ClassDeclaration"||i.kind==="Class")||t.exports.length>5)?"Solid":"Liquid"}static mapClassificationToTier(e){let t=e.toLowerCase();return t==="service"||t==="repository"||t==="model"||t==="controller"||t==="handler"||t==="component"||t==="hook"||t==="titanium"||t==="solid"?"Solid":t==="test"||t==="iron"||t==="virtual"?"Virtual":t==="lead"||t==="intel"?"Intel":t==="ghost"||t==="error"||t==="phantom"?"Phantom":"Liquid"}static getMultiplier(e,t){let n=t?this.mapClassificationToTier(t):this.classify(e);return qu[n]}};G();function Vu(s,e){let t=[];for(let n=0;n<=e.length;n++)t[n]=[n];for(let n=0;n<=s.length;n++)t[0][n]=n;for(let n=1;n<=e.length;n++)for(let i=1;i<=s.length;i++)e.charAt(n-1)===s.charAt(i-1)?t[n][i]=t[n-1][i-1]:t[n][i]=Math.min(t[n-1][i-1]+1,t[n][i-1]+1,t[n-1][i]+1);return t[e.length][s.length]}function Ju(s,e){let t=Vu(s.toLowerCase(),e.toLowerCase()),n=Math.max(s.length,e.length);return Math.round((n-t)/n*100)}function tc(s){let e=[],t="";for(let n=0;n<s.length;n++){let i=s[n],r=i>="A"&&i<="Z",o=i>="a"&&i<="z";r&&t.length>0?(e.push(t),t=i):o||r?t+=i:t.length>0&&(e.push(t),t="")}return t.length>0&&e.push(t),e}function Yu(s,e){let t=tc(e),n=s.toLowerCase();if(t.map(o=>o[0].toLowerCase()).join("")===n)return!0;let r=0;for(let o of t){if(r>=s.length)break;let a=o.toLowerCase();if(a.startsWith(n.slice(r))){r=s.length;break}a[0]===n[r]&&r++}return r===s.length}function Ku(s,e){return tc(e).map(i=>i[0].toLowerCase()).join("")===s.toLowerCase()}function Qu(s,e){let t=s.toLowerCase(),n=e.toLowerCase();if(s===e)return{matchType:"exact",score:100};if(t===n)return{matchType:"exact-case-insensitive",score:98};if(n.startsWith(t))return{matchType:"prefix",score:90+s.length/e.length*8};if(n.endsWith(t))return{matchType:"suffix",score:80+s.length/e.length*8};if(n.includes(t)){let r=s.length/e.length,o=n.indexOf(t)/e.length;return{matchType:"substring",score:70+r*10-o*5}}return Ku(s,e)?{matchType:"acronym",score:75}:Yu(s,e)?{matchType:"camel-case",score:65}:{matchType:"levenshtein",score:Ju(s,e)*.6}}function Ln(s,e,t=50,n=5){let i=[];for(let r of e){let{matchType:o,score:a}=Qu(s,r);if(a>=t){let l={exact:1e3,"exact-case-insensitive":900,prefix:800,suffix:700,substring:600,acronym:550,"camel-case":500,levenshtein:100}[o]+a;i.push({match:r,score:a,matchType:o,rank:l})}}return i.sort((r,o)=>o.rank!==r.rank?o.rank-r.rank:o.score!==r.score?o.score-r.score:r.match.length-o.match.length),i.slice(0,n)}rn();var Lt=class s{constructor(e){this.repoPath=e}get filesRepo(){return N.getInstance(this.repoPath).files}get exportsRepo(){return N.getInstance(this.repoPath).exports}get intentLogsRepo(){return N.getInstance(this.repoPath).intentLogs}static normalizeFileType(e){if(e==null)return;let t=Array.isArray(e)?e:e.split(",").map(n=>n.trim().replace(/^\./,""));return t.filter(Boolean).length?t:void 0}static matchesFilters(e,t,n,i){if(t.fileType?.length){let r=e.replace(/^.*\./,"").toLowerCase();if(!t.fileType.some(o=>o.toLowerCase()===r))return!1}if(t.layer!=null||t.excludeLayers&&t.excludeLayers.length>0){let r=i!=null?Xe.mapClassificationToTier(i):Xe.classify(e);if(t.layer!=null&&r!==t.layer||t.excludeLayers?.includes(r))return!1}return!0}async searchByPath(e,t,n,i,r,o=!1){let a=this.extractPathKeywords(e),c=this.isLikelySymbolQuery(e),l=this.filesRepo.findByPathKeywords(a,Math.min((t??50)*(r?ve.FILTERED_QUERY_LIMIT_MULTIPLIER:1),Fe.MAX_LIMIT)).map(_=>({..._,source:"path",keywordHits:this.countPathKeywordHits(_.path,a),relevance:this.scorePathResult(_.path,a,"path",c)}));r&&(l=l.filter(_=>s.matchesFilters(_.path,i,_.mtime,_.classification))),c&&a.length>=3&&(l=l.filter(_=>_.source==="symbol"||_.keywordHits>=2));let p=this.findSymbolBackedPaths(e,a,t*3),u=new Set(l.map(_=>_.path));for(let _ of p){if(u.has(_))continue;let E=this.filesRepo.findByPath(_);E&&(r&&!s.matchesFilters(E.path,i,E.mtime,E.classification)||(l.push({...E,source:"symbol",keywordHits:this.countPathKeywordHits(E.path,a),relevance:this.scorePathResult(E.path,a,"symbol",c)}),u.add(_)))}l.sort((_,E)=>E.relevance-_.relevance),r||(l=l.slice(0,Math.min(t*4,Fe.MAX_LIMIT)));let d=l.length;if(d===0)return{content:[{type:"text",text:`No indexed files match path/filename: "${e}".
 
-If the repo is not indexed, run shadow_recon_onboard then shadow_sync_trace. Otherwise try broader keywords.`}]};let h=b=>b.replace(this.repoPath,"").replace(/^\//,"");if(o){let w=new Se(this.repoPath).getSection("gravity"),x=new Map;if(w?.hotspots)for(let E of w.hotspots){let T=x.get(E.filePath)||0;x.set(E.filePath,T+E.gravity)}let R=l.map(E=>{let T=x.get(E.path)||0,I=E.classification?We.mapClassificationToTier(E.classification):We.classify(E.path);return{...E,gravity:T,layer:I}});R.sort((E,T)=>T.gravity!==E.gravity?T.gravity-E.gravity:T.relevance!==E.relevance?T.relevance-E.relevance:E.path.localeCompare(T.path));let k=R.slice(n,n+t),D=n+t<d;if(k.length===0)return{content:[{type:"text",text:`No results at offset ${n}. Total matches: ${d}.`}]};let U=D?`
+If the repo is not indexed, run shadow_recon_onboard then shadow_sync_trace. Otherwise try broader keywords.`}]};let h=_=>_.replace(this.repoPath,"").replace(/^\//,"");if(o){let E=new Ae(this.repoPath).getSection("gravity"),R=new Map;if(E?.hotspots)for(let v of E.hotspots){let I=R.get(v.filePath)||0;R.set(v.filePath,I+v.gravity)}let T=l.map(v=>{let I=R.get(v.path)||0,$=v.classification?Xe.mapClassificationToTier(v.classification):Xe.classify(v.path);return{...v,gravity:I,layer:$}});T.sort((v,I)=>I.gravity!==v.gravity?I.gravity-v.gravity:I.relevance!==v.relevance?I.relevance-v.relevance:v.path.localeCompare(I.path));let k=T.slice(n,n+t),F=n+t<d;if(k.length===0)return{content:[{type:"text",text:`No results at offset ${n}. Total matches: ${d}.`}]};let B=F?`
 > **Note**: More results available. Use \`offset: ${n+t}\` to see the next page.`:"";return{content:[{type:"text",text:`# Resolved paths: "${e}" (Ranked by Gravity)
 
-Showing ${k.length} of ${d} file(s) (offset: ${n}, limit: ${t})${U}
+Showing ${k.length} of ${d} file(s) (offset: ${n}, limit: ${t})${B}
 
-`+k.map((E,T)=>{let I=E.gravity>50?" \u269B\uFE0F":E.gravity>0?" \u2022":"",M=E.gravity>0?` [G:${Math.round(E.gravity)}]`:"",N=E.source==="symbol"?" [via symbol]":"";return`${n+T+1}. \`${h(E.path)}\` (${E.layer})${I}${M}${N}`}).join(`
+`+k.map((v,I)=>{let $=v.gravity>50?" \u269B\uFE0F":v.gravity>0?" \u2022":"",P=v.gravity>0?` [G:${Math.round(v.gravity)}]`:"",U=v.source==="symbol"?" [via symbol]":"";return`${n+I+1}. \`${h(v.path)}\` (${v.layer})${$}${P}${U}`}).join(`
 `)+`
 
-> **Legend**: \u269B\uFE0F = High-gravity hotspot (>50), \u2022 = Has gravity, G = Gravity score`}]}}let m=l.slice(n,n+t),f=n+t<d;if(m.length===0)return{content:[{type:"text",text:`No results at offset ${n}. Total matches: ${d}.`}]};let _=f?`
+> **Legend**: \u269B\uFE0F = High-gravity hotspot (>50), \u2022 = Has gravity, G = Gravity score`}]}}let m=l.slice(n,n+t),f=n+t<d;if(m.length===0)return{content:[{type:"text",text:`No results at offset ${n}. Total matches: ${d}.`}]};let S=f?`
 > **Note**: More results available. Use \`offset: ${n+t}\` to see the next page.`:"";return{content:[{type:"text",text:`# Resolved paths: "${e}"
 
-Showing ${m.length} of ${d} file(s) (offset: ${n}, limit: ${t})${_}
+Showing ${m.length} of ${d} file(s) (offset: ${n}, limit: ${t})${S}
 
-`+m.map((b,w)=>{let x=b.source==="symbol"?" [via symbol]":"";return`${n+w+1}. \`${h(b.path)}\`${b.classification?` (${b.classification})`:""}${x}`}).join(`
-`)}]}}async searchByConcept(e,t,n,i,r,o=!1,a){S.info({repoPath:this.repoPath,query:e},"Searching by concept (Semantic Analysis)...");let c=await ts(e),l=x=>x.replace(this.repoPath,"").replace(/^\//,""),p=ht.extractKeywords(e),u=this.classifyConceptQuery(e,p),d=this.getConceptConfidenceFloor(u.profile),h=this.getIntentConfidenceFloor(u.profile),m=Math.min(Math.max((t+n)*2,t),ke.MAX_LIMIT),f=await this.findConceptMatches(e,c,i,r,m,0),_=c?await this.findIntentLogMatches(c,5):[],g=f.filter(x=>(x.score||0)>=d),b=f.filter(x=>(x.score||0)<d),w=_.filter(x=>(x.score||0)>=h);if(g.length>0){let x=g.length,R=g.slice(n,n+t),D=n+t<x?`
-> **Note**: More results available. Use \`offset: ${n+t}\` to see the next page.`:"",U=o?`
-> _Compact mode: snippets omitted_`:x>20&&!o?"\n> \u{1F4A1} **Tip**: Use `compact: true` to reduce output size (omits snippets).":"",P=a&&a>0?`
-> _Adaptive compression enabled under token budget._`:"",E=b.length>0?`
-> _${b.length} lower-confidence candidate(s) were suppressed below the ${Math.round(d*100)}% evidence floor._`:"",T=`# Semantic Concept Search: "${e}"
+`+m.map((_,E)=>{let R=_.source==="symbol"?" [via symbol]":"";return`${n+E+1}. \`${h(_.path)}\`${_.classification?` (${_.classification})`:""}${R}`}).join(`
+`)}]}}async searchByConcept(e,t,n,i,r,o=!1,a){w.info({repoPath:this.repoPath,query:e},"Searching by concept (Semantic Analysis)...");let c=await ys(e),l=R=>R.replace(this.repoPath,"").replace(/^\//,""),p=Ct.extractKeywords(e),u=this.classifyConceptQuery(e,p),d=this.getConceptConfidenceFloor(u.profile),h=this.getIntentConfidenceFloor(u.profile),m=Math.min(Math.max((t+n)*2,t),Fe.MAX_LIMIT),f=await this.findConceptMatches(e,c,i,r,m,0),S=c?await this.findIntentLogMatches(c,5):[],y=f.filter(R=>(R.score||0)>=d),_=f.filter(R=>(R.score||0)<d),E=S.filter(R=>(R.score||0)>=h);if(y.length>0){let R=y.length,T=y.slice(n,n+t),F=n+t<R?`
+> **Note**: More results available. Use \`offset: ${n+t}\` to see the next page.`:"",B=o?`
+> _Compact mode: snippets omitted_`:R>20&&!o?"\n> \u{1F4A1} **Tip**: Use `compact: true` to reduce output size (omits snippets).":"",M=a&&a>0?`
+> _Adaptive compression enabled under token budget._`:"",v=_.length>0?`
+> _${_.length} lower-confidence candidate(s) were suppressed below the ${Math.round(d*100)}% evidence floor._`:"",I=`# Semantic Concept Search: "${e}"
 
-Showing ${R.length} of ${x} high-confidence file(s) (offset: ${n}, limit: ${t})${D}${U}${P}${E}
+Showing ${T.length} of ${R} high-confidence file(s) (offset: ${n}, limit: ${t})${F}${B}${M}${v}
 
-`,M=new Se(this.repoPath).getSection("gravity"),N=new Map;if(M?.hotspots)for(let A of M.hotspots)N.set(A.filePath,A.gravity);let $=R.map((A,H)=>{let F=l(A.path),v=Math.round((A.score||0)*100),B=N.get(A.path)?" \u269B\uFE0F":"";return`${n+H+1}. \`${F}\`${B} (${v}% evidence) - ${A.summary||"No summary"}`}),W=R.map((A,H)=>{let F=l(A.path),v=Math.round((A.score||0)*100),C=N.get(A.path),B=C?" \u269B\uFE0F **CORE**":"",j=C&&C>50?`
-> \u26A0\uFE0F **STRATEGIC RISK**: High-gravity hotspot (${C.toFixed(0)}). Modifications may have significant architectural impact.`:"",J=`## ${n+H+1}. ${F}${B} (${v}% Evidence Match)
-> **Rationale**: ${A.rationale}${j}
+`,P=new Ae(this.repoPath).getSection("gravity"),U=new Map;if(P?.hotspots)for(let D of P.hotspots)U.set(D.filePath,D.gravity);let A=T.map((D,J)=>{let z=l(D.path),g=Math.round((D.score||0)*100),O=U.get(D.path)?" \u269B\uFE0F":"";return`${n+J+1}. \`${z}\`${O} (${g}% evidence) - ${D.summary||"No summary"}`}),H=T.map((D,J)=>{let z=l(D.path),g=Math.round((D.score||0)*100),x=U.get(D.path),O=x?" \u269B\uFE0F **CORE**":"",C=x&&x>50?`
+> \u26A0\uFE0F **STRATEGIC RISK**: High-gravity hotspot (${x.toFixed(0)}). Modifications may have significant architectural impact.`:"",W=`## ${n+J+1}. ${z}${O} (${g}% Evidence Match)
+> **Rationale**: ${D.rationale}${C}
 
-`+(A.snippet?`**Matched Snippet**:
+`+(D.snippet?`**Matched Snippet**:
 \`\`\`typescript
-${A.snippet}
+${D.snippet}
 \`\`\`
 
-`:"")+`**Summary**: ${A.summary||"No summary available"}
-`;return{index:n+H+1,relativePath:F,matchPct:v,gravity:C,text:J}}),L="";if(o)L=T+$.join(`
-`);else if(a&&a>0){let A=Math.max(80,Math.floor(a*.12)),H=this.estimateTokenCount(T),F=[],v=[];for(let C of W){let B=this.estimateTokenCount(C.text),j=H+B<=a-A;if(F.length<2||j)F.push(C.text),H+=B;else{let J=C.gravity?" \u269B\uFE0F":"";v.push(`${C.index}. \`${C.relativePath}\`${J} (${C.matchPct}% Evidence Match)`)}}L=T+F.join(`
-`),v.length>0&&(L+=`
+`:"")+`**Summary**: ${D.summary||"No summary available"}
+`;return{index:n+J+1,relativePath:z,matchPct:g,gravity:x,text:W}}),L="";if(o)L=I+A.join(`
+`);else if(a&&a>0){let D=Math.max(80,Math.floor(a*.12)),J=this.estimateTokenCount(I),z=[],g=[];for(let x of H){let O=this.estimateTokenCount(x.text),C=J+O<=a-D;if(z.length<2||C)z.push(x.text),J+=O;else{let W=x.gravity?" \u269B\uFE0F":"";g.push(`${x.index}. \`${x.relativePath}\`${W} (${x.matchPct}% Evidence Match)`)}}L=I+z.join(`
+`),g.length>0&&(L+=`
 
-### Folded Lower-Relevance Matches (${v.length})
+### Folded Lower-Relevance Matches (${g.length})
 _Expanded blocks omitted to stay within token budget._
-`+v.join(`
-`))}else L=T+W.map(A=>A.text).join(`
-`);if(w.length>0){let A=`
+`+g.join(`
+`))}else L=I+H.map(D=>D.text).join(`
+`);if(E.length>0){let D=`
 
 ---
-## Intent Vectors (${w.length} matching decision(s))
+## Intent Vectors (${E.length} matching decision(s))
 
-`+w.map((F,v)=>{let C=Math.round((F.score||0)*100),B=F.symbolName?` \`${F.symbolName}\``:"",j=F.missionId?` [Mission #${F.missionId}]`:"",J=F.content.length>200?F.content.slice(0,200)+"...":F.content;return o?`${v+1}. **[${F.type}]**${B}${j} (${C}%) - ${J}`:`### ${v+1}. [${F.type}]${B}${j} (${C}% Evidence Match)
-> ${J}
+`+E.map((z,g)=>{let x=Math.round((z.score||0)*100),O=z.symbolName?` \`${z.symbolName}\``:"",C=z.missionId?` [Mission #${z.missionId}]`:"",W=z.content.length>200?z.content.slice(0,200)+"...":z.content;return o?`${g+1}. **[${z.type}]**${O}${C} (${x}%) - ${W}`:`### ${g+1}. [${z.type}]${O}${C} (${x}% Evidence Match)
+> ${W}
 `}).join(`
-`),H=`
+`),J=`
 
 ---
-## Intent Vectors (${w.length} matching decision(s))
+## Intent Vectors (${E.length} matching decision(s))
 
-`+w.slice(0,2).map((F,v)=>{let C=Math.round((F.score||0)*100),B=F.symbolName?` \`${F.symbolName}\``:"",j=F.missionId?` [Mission #${F.missionId}]`:"";return`${v+1}. **[${F.type}]**${B}${j} (${C}%)`}).join(`
-`)+(w.length>2?`
-> Additional intent matches folded by token budget.`:"");a&&a>0&&this.estimateTokenCount(L+A)>a?L+=H:L+=A}return{content:[{type:"text",text:L}]}}if(n===0){let x=this.filesRepo.getStats(),R=e.toLowerCase().split(/\s+/),k=this.filesRepo.findByPathKeywords(R,t);if(r&&(k=k.filter(D=>s.matchesFilters(D.path,i,D.mtime,D.classification))),k.length>0)return{content:[{type:"text",text:`# Concept Search: "${e}"
+`+E.slice(0,2).map((z,g)=>{let x=Math.round((z.score||0)*100),O=z.symbolName?` \`${z.symbolName}\``:"",C=z.missionId?` [Mission #${z.missionId}]`:"";return`${g+1}. **[${z.type}]**${O}${C} (${x}%)`}).join(`
+`)+(E.length>2?`
+> Additional intent matches folded by token budget.`:"");a&&a>0&&this.estimateTokenCount(L+D)>a?L+=J:L+=D}return{content:[{type:"text",text:L}]}}if(n===0){let R=this.filesRepo.getStats(),T=e.toLowerCase().split(/\s+/),k=this.filesRepo.findByPathKeywords(T,t);if(r&&(k=k.filter(F=>s.matchesFilters(F.path,i,F.mtime,F.classification))),k.length>0)return{content:[{type:"text",text:`# Concept Search: "${e}"
 
-\u26A0\uFE0F No high-confidence semantic matches cleared the ${Math.round(d*100)}% evidence floor (${x.withSummary}/${x.total} summaries indexed).
+\u26A0\uFE0F No high-confidence semantic matches cleared the ${Math.round(d*100)}% evidence floor (${R.withSummary}/${R.total} summaries indexed).
 
 Found ${k.length} file(s) with matching paths:
 
-`+k.map((U,P)=>`${P+1}. \`${l(U.path)}\` (${U.classification||"Unknown"})`).join(`
-`)}]};if(b.length>0){let D=b.slice(0,Math.min(3,t)).map((U,P)=>{let E=Math.round((U.score||0)*100);return`${P+1}. \`${l(U.path)}\` (${E}% evidence) - ${U.summary||"No summary"}`}).join(`
+`+k.map((B,M)=>`${M+1}. \`${l(B.path)}\` (${B.classification||"Unknown"})`).join(`
+`)}]};if(_.length>0){let F=_.slice(0,Math.min(3,t)).map((B,M)=>{let v=Math.round((B.score||0)*100);return`${M+1}. \`${l(B.path)}\` (${v}% evidence) - ${B.summary||"No summary"}`}).join(`
 `);return{content:[{type:"text",text:`# Semantic Concept Search: "${e}"
 
 No high-confidence semantic matches cleared the evidence floor (${Math.round(d*100)}% required for ${u.profile} queries).
 
 Low-confidence candidates were suppressed instead of being presented as relevant matches:
-${D?`
-${D}
+${F?`
+${F}
 
 `:`
 `}Try adding distinctive identifiers, narrowing the concept, or using shadow_search_symbol({ query: "${e}", repoPath }).`}]}}}return{content:[{type:"text",text:`No high-confidence files found matching concept: "${e}"
 
-Try a symbol search: shadow_search_symbol({ query: "${e}", repoPath })`}]}}async searchBySymbol(e,t,n,i,r,o="any"){let a=e.toLowerCase(),c=E=>E.replace(this.repoPath,"").replace(/^\//,""),l=this.buildFtsQuery(e,o),p;try{p=this.exportsRepo.findFts(l,t+50)}catch{p=this.exportsRepo.findByPartialName(e,t+50)}if(p.length===0){let E=this.exportsRepo.getAllNames(5e3),T=e.trim().split(/\s+/).filter(M=>M.length>0);if(T.length>1){let M=new Map;for(let $ of T){let W=bn($,E,40,20);for(let L of W){let A=M.get(L.match);A?(A.terms.push($),A.bestScore=Math.max(A.bestScore,L.score)):M.set(L.match,{terms:[$],bestScore:L.score})}}let N=Array.from(M.entries()).sort(($,W)=>W[1].terms.length!==$[1].terms.length?W[1].terms.length-$[1].terms.length:W[1].bestScore-$[1].bestScore).slice(0,10);if(N.length>0){let $=N.map(([W,L])=>{let A=L.terms.join(", ");return`  \u2022 \`${W}\` (matches: ${A}, ${Math.round(L.bestScore)}%)`}).join(`
+Try a symbol search: shadow_search_symbol({ query: "${e}", repoPath })`}]}}async searchBySymbol(e,t,n,i,r,o="any"){let a=e.toLowerCase(),c=v=>v.replace(this.repoPath,"").replace(/^\//,""),l=this.buildFtsQuery(e,o),p;try{p=this.exportsRepo.findFts(l,t+50)}catch{p=this.exportsRepo.findByPartialName(e,t+50)}if(p.length===0){let v=this.exportsRepo.getAllNames(5e3),I=e.trim().split(/\s+/).filter(P=>P.length>0);if(I.length>1){let P=new Map;for(let A of I){let H=Ln(A,v,40,20);for(let L of H){let D=P.get(L.match);D?(D.terms.push(A),D.bestScore=Math.max(D.bestScore,L.score)):P.set(L.match,{terms:[A],bestScore:L.score})}}let U=Array.from(P.entries()).sort((A,H)=>H[1].terms.length!==A[1].terms.length?H[1].terms.length-A[1].terms.length:H[1].bestScore-A[1].bestScore).slice(0,10);if(U.length>0){let A=U.map(([H,L])=>{let D=L.terms.join(", ");return`  \u2022 \`${H}\` (matches: ${D}, ${Math.round(L.bestScore)}%)`}).join(`
 `);return{content:[{type:"text",text:`No symbols found matching all terms: "${e}"
 
 **Partial matches:**
-${$}
+${A}
 
-\u{1F4A1} Try searching for individual terms, or use shadow_search_concept for semantic search.`}]}}}else{let M=bn(e,E,50,5);if(M.length>0){let N=M.map($=>`  \u2022 \`${$.match}\` (${Math.round($.score)}% ${$.matchType} match)`).join(`
+\u{1F4A1} Try searching for individual terms, or use shadow_search_concept for semantic search.`}]}}}else{let P=Ln(e,v,50,5);if(P.length>0){let U=P.map(A=>`  \u2022 \`${A.match}\` (${Math.round(A.score)}% ${A.matchType} match)`).join(`
 `);return{content:[{type:"text",text:`No symbols found matching: "${e}"
 
 **Did you mean?**
-${N}
+${U}
 
 \u{1F4A1} Try shadow_search_symbol with fuzzy, or shadow_search_concept for semantic search.`}]}}}return{content:[{type:"text",text:`No symbols found matching: "${e}"
 
-\u{1F4A1} Try shadow_search_symbol (fuzzy) or shadow_search_concept for semantic search.`}]}}r&&(p=p.filter(E=>{let T=this.filesRepo.findByPath(E.file_path);return s.matchesFilters(E.file_path,i,T?.mtime,T?.classification)}));let u=new yn(this.repoPath),d=new Se(this.repoPath),h=u.getAncestorMissionIds(),m=me(this.repoPath)||void 0,f=this.exportsRepo.getGravityMap(h,m),_=d.getSection("gravity"),g=new Map;if(_?.hotspots)for(let E of _.hotspots)g.set(`${E.filePath}::${E.symbol}`,E.gravity);let b="\u{1F525}",w="\u26A1",x="\u269B\uFE0F",R=p.map((E,T)=>{let I=f[E.id],M=g.get(`${E.file_path}::${E.name}`),N=this.filesRepo.findByPath(E.file_path),$=We.getMultiplier(E.file_path,N?.classification),W=(ge.SCORE_BASE-T)*$;I&&(W+=I.score*ge.SCORE_BASE),M&&(W+=M*ge.SCORE_BASE*ge.GRAVITY_STRUCTURAL_WEIGHT),E.name.toLowerCase()===a&&(W+=ge.EXACT_MATCH_BONUS*$);let L=N?.mtime;if(L!=null){let H=L>1e10?L/1e3:L,F=(Date.now()/1e3-H)/ls.SECONDS_PER_DAY;F<ge.RECENT_FILE_THRESHOLD_DAYS?W+=ge.RECENT_FILE_BOOST:F<ge.OLDER_FILE_THRESHOLD_DAYS&&(W+=ge.OLDER_FILE_BOOST)}let A=[];return I&&A.push(...I.reasons),M&&A.push(`Structural Hotspot (Gravity: ${M.toFixed(1)})`),{...E,activeGravity:I,structuralGravity:M,sortScore:W,reasons:A}}).sort((E,T)=>T.sortScore-E.sortScore).slice(n,n+t),k=p.length,D=n+t<k,U=R.map((E,T)=>{let I=c(E.file_path),M=this.filesRepo.getContent(E.file_path),N="";if(M){let L=M.split(`
-`);N=L.slice(Math.max(0,E.start_line-2),Math.min(L.length,E.start_line+3)).join(`
-`).trim()}let $=[];E.activeGravity&&(E.activeGravity.reasons.some(L=>L.includes("Working Set"))?$.push(b):E.activeGravity.reasons.some(L=>L.includes("Recent Intent"))&&$.push(w)),E.structuralGravity&&$.push(x);let W=$.length>0?` ${$.join("")}`:"";return{relPath:I,name:E.name,kind:E.kind,signature:E.signature,line:E.start_line,snippet:N,badgeStr:W,gravityReasons:E.reasons}});return{content:[{type:"text",text:`# Symbol Search Results: "${e}"
+\u{1F4A1} Try shadow_search_symbol (fuzzy) or shadow_search_concept for semantic search.`}]}}r&&(p=p.filter(v=>{let I=this.filesRepo.findByPath(v.file_path);return s.matchesFilters(v.file_path,i,I?.mtime,I?.classification)}));let u=new In(this.repoPath),d=new Ae(this.repoPath),h=u.getAncestorMissionIds(),m=be(this.repoPath)||void 0,f=this.exportsRepo.getGravityMap(h,m),S=d.getSection("gravity"),y=new Map;if(S?.hotspots)for(let v of S.hotspots)y.set(`${v.filePath}::${v.symbol}`,v.gravity);let _="\u{1F525}",E="\u26A1",R="\u269B\uFE0F",T=p.map((v,I)=>{let $=f[v.id],P=y.get(`${v.file_path}::${v.name}`),U=this.filesRepo.findByPath(v.file_path),A=Xe.getMultiplier(v.file_path,U?.classification),H=(ve.SCORE_BASE-I)*A;$&&(H+=$.score*ve.SCORE_BASE),P&&(H+=P*ve.SCORE_BASE*ve.GRAVITY_STRUCTURAL_WEIGHT),v.name.toLowerCase()===a&&(H+=ve.EXACT_MATCH_BONUS*A);let L=U?.mtime;if(L!=null){let J=L>1e10?L/1e3:L,z=(Date.now()/1e3-J)/Rs.SECONDS_PER_DAY;z<ve.RECENT_FILE_THRESHOLD_DAYS?H+=ve.RECENT_FILE_BOOST:z<ve.OLDER_FILE_THRESHOLD_DAYS&&(H+=ve.OLDER_FILE_BOOST)}let D=[];return $&&D.push(...$.reasons),P&&D.push(`Structural Hotspot (Gravity: ${P.toFixed(1)})`),{...v,activeGravity:$,structuralGravity:P,sortScore:H,reasons:D}}).sort((v,I)=>I.sortScore-v.sortScore).slice(n,n+t),k=p.length,F=n+t<k,B=T.map((v,I)=>{let $=c(v.file_path),P=this.filesRepo.getContent(v.file_path),U="";if(P){let L=P.split(`
+`);U=L.slice(Math.max(0,v.start_line-2),Math.min(L.length,v.start_line+3)).join(`
+`).trim()}let A=[];v.activeGravity&&(v.activeGravity.reasons.some(L=>L.includes("Working Set"))?A.push(_):v.activeGravity.reasons.some(L=>L.includes("Recent Intent"))&&A.push(E)),v.structuralGravity&&A.push(R);let H=A.length>0?` ${A.join("")}`:"";return{relPath:$,name:v.name,kind:v.kind,signature:v.signature,line:v.start_line,snippet:U,badgeStr:H,gravityReasons:v.reasons}});return{content:[{type:"text",text:`# Symbol Search Results: "${e}"
 
-Showing ${U.length} matching symbol(s)${D?` (use offset=${n+t} for more)`:""}:
+Showing ${B.length} matching symbol(s)${F?` (use offset=${n+t} for more)`:""}:
 
-`+U.map((E,T)=>{let I=`## ${n+T+1}. \`${E.name}\` (${E.kind})${E.badgeStr}
-**File**: \`${E.relPath}:${E.line}\`
-`;return E.gravityReasons&&(I+=`> *${E.gravityReasons.join(", ")}*
-`),E.signature&&(I+=`**Signature**: \`${E.signature}\`
-`),E.snippet&&(I+=`
+`+B.map((v,I)=>{let $=`## ${n+I+1}. \`${v.name}\` (${v.kind})${v.badgeStr}
+**File**: \`${v.relPath}:${v.line}\`
+`;return v.gravityReasons&&($+=`> *${v.gravityReasons.join(", ")}*
+`),v.signature&&($+=`**Signature**: \`${v.signature}\`
+`),v.snippet&&($+=`
 \`\`\`typescript
-${E.snippet}
+${v.snippet}
 \`\`\`
-`),I}).join(`
-`)}]}}async findConceptMatches(e,t,n,i,r,o=0){let a=me(this.repoPath)||void 0,l=new Ri(this.repoPath).getScorer(),u=new yn(this.repoPath).getAncestorMissionIds(),d=this.filesRepo.getGravityMap(u,a),h=ht.extractKeywords(e),m=h.length>=3,f=this.extractOrderedConceptTerms(e),_=this.buildNgrams(f,2,3),g=this.classifyConceptQuery(e,h),b=m?this.collectConceptSymbolHintPaths(h,Math.max(r*10,100)):new Set,w=Math.min(Math.max((r+o)*g.channelMultiplier,ge.FILTERED_QUERY_LIMIT_MULTIPLIER*20),ke.MAX_LIMIT),x=Math.min(Math.max(w*4,200),4e3),[R,k,D]=await Promise.all([Promise.resolve(t?this.filesRepo.findWithEmbeddings():[]),Promise.resolve(this.filesRepo.findContentFts(e,w)),Promise.resolve(t?this.exportsRepo.findWithEmbeddings(x):[])]),U=[];if(t){for(let v of R)try{let C=JSON.parse(v.embedding),B=Mn(t,C);U.push({row:v,similarity:B,vectorRank:0})}catch{}U.sort((v,C)=>C.similarity-v.similarity);for(let v=0;v<U.length;v++)U[v].vectorRank=v+1}let P=[];if(t){for(let v of D)if(v.embedding)try{let C=JSON.parse(v.embedding),B=Mn(t,C);if(B<=0)continue;P.push({row:v,similarity:B,symbolVectorRank:0})}catch{}P.sort((v,C)=>C.similarity-v.similarity);for(let v=0;v<P.length;v++)P[v].symbolVectorRank=v+1}let E=new Map;for(let v of R)E.set(v.path,v);for(let v of k)E.has(v.path)||E.set(v.path,v);let T=new Map,I=[],M=new Set;for(let v of P.slice(0,x)){let C=v.row.file_path,B=T.get(C);if((!B||v.similarity>B.similarity)&&T.set(C,{similarity:v.similarity,symbolRank:v.symbolVectorRank,symbolName:v.row.name}),M.has(C))continue;let j=E.get(C);j||(j=this.filesRepo.findByPath(C),j&&E.set(C,j)),j&&(I.push({path:C,rank:v.symbolVectorRank,score:v.similarity,row:j,symbolName:v.row.name}),M.add(C))}let N=this.rrfMerge(U.slice(0,w).map(v=>({path:v.row.path,rank:v.vectorRank,score:v.similarity,row:v.row})),k.slice(0,w).map((v,C)=>({path:v.path,rank:C+1,bm25Rank:v.bm25_rank,row:v})),g.rrfK,{vectorWeight:g.vectorWeight,ftsWeight:g.ftsWeight,symbolWeight:g.symbolWeight,symbolResults:I.slice(0,w)});if(N.length===0)return[];let $=new Map;for(let v of U)$.set(v.row.path,v.similarity);let W=Math.min(N.length,Math.max(r*g.lexicalWindowMultiplier,40)),L=new Set(N.slice(0,W).map(v=>v.path)),A=[],H=new Map;for(let v of N){let C=v.row,B=$.get(C.path)||0,j=T.get(C.path),J=j?.similarity||0,z=Math.max(B,J),G=v.ftsRank!==null,we=v.symbolVectorRank!==null||!!j,xe=v.vectorRank!==null||we,he=b.has(C.path),le=L.has(C.path)||G||he||we;if(!le&&v.fusedScore<g.earlyRejectThreshold&&z<.18&&!i)continue;let re=le?this.filesRepo.getContent(C.path):null,He=ge.ENABLE_LEXICAL_SCORING&&re?ht.calculateLexicalScore(re,e):0,Mt=re?ht.calculateKeywordCoverageFromKeywords(re,h):0,_t=h.length>0?Math.round(Mt*h.length):0,ze=this.calculatePhraseCoverage(`${C.path}
-${C.summary||""}
-${re||""}`,_),Sn=1;if(re){let tn=/\b(class|function|const|let|var|enum)\s+\w+/.test(re);if(/export\s+/.test(re)&&!tn){let Dc=re.replace(/\/\/.*$/gm,"").replace(/\/\*[\s\S]*?\*\//g,"");/\b(class|function|const|let|var|enum)\s+\w+/.test(Dc)||(Sn=.1)}}let Lc=he?.08:we?.1:He>0||ze>0||G?.14:m?.22:.18;if(xe&&z<=Lc&&!G)continue;if(h.length>0&&He===0&&!G){if(m){if(!he&&(_t===0&&ze===0&&z<.4||_t<=1&&ze===0&&z<.34||_t===1&&z<.3))continue}else if(_t===0&&z<.24)continue}if(m&&!he&&ze===0&&_t<=1&&z<.3&&!G||i&&!s.matchesFilters(C.path,n,C.mtime,C.classification))continue;let $c=C.mtime>2e9?Math.floor(C.mtime/1e3):C.mtime,Ac=Math.floor(Date.now()/1e3)-ls.SECONDS_PER_YEAR,Bi=We.getMultiplier(C.path,C.classification),Pc=xe?l.calculateScore(z,$c||Ac):0,Ye=(v.fusedScore*60+Pc*.2)*Bi,wn=d[C.path],Mc=C.classification?We.mapClassificationToTier(C.classification):We.classify(C.path,{content:re??void 0}),ve=`vector_rank: ${this.formatRank(v.vectorRank)} | symbol_vector_rank: ${this.formatRank(v.symbolVectorRank)} | fts_rank: ${this.formatRank(v.ftsRank)} | fused_score: ${v.fusedScore.toFixed(6)} | query_profile: ${g.profile} | Similarity: ${(z*100).toFixed(0)}%, Tier: ${Mc}${Bi!==1?` (${Bi}x)`:""}`;if(he&&(ve+=" | SymbolHint"),j&&(ve+=` | SymbolVec: ${j.symbolName}`),He>0&&(Ye+=He*ge.LEXICAL_WEIGHT,ve+=` | Lexical: +${He.toFixed(1)}`),h.length>0)if(Mt>0){let tn=m?Mt*.45:Mt*.35;Ye+=tn,ve+=` | Keywords: ${(Mt*100).toFixed(0)}%`}else ve+=" | Keywords: 0%",m&&!G&&(Ye*=.55,ve+=" (penalty)");if(_.length>0)if(ze>0){let tn=m?ze*.8:ze*.35;Ye+=tn,ve+=` | Phrases: ${(ze*100).toFixed(0)}%`}else m&&!G&&(Ye*=.72,ve+=" | Phrases: 0% (penalty)");wn&&(Ye+=wn.score,ve+=` | \u{1F525} Gravity: +${wn.score.toFixed(1)} (${wn.reasons.join(", ")})`),m&&this.isGenericConceptPath(C.path)&&_t<=1&&ze===0&&!G&&(Ye*=.75,ve+=" | Generic path penalty"),Sn<1&&(Ye*=Sn,ve+=` | \u{1F4C9} Barrel: x${Sn}`);let Nc=re?ht.extractSnippet(re,e):void 0;A.push({path:C.path,summary:C.summary||"",score:z,fusedScore:v.fusedScore,vectorRank:v.vectorRank,ftsRank:v.ftsRank,decayedScore:Ye,rationale:ve,snippet:Nc}),H.set(C.path,{lexicalScore:He,keywordCoverage:Mt,matchedKeywordCount:_t,phraseCoverage:ze,similarity:z,hasFtsSignal:G,hasSymbolHint:he,hasSymbolVectorSignal:we,lexicalConfirm:0,identifierOverlap:0,isGenericPath:this.isGenericConceptPath(C.path)})}if(A.length>0&&h.length>0){let v=this.exportsRepo.findByFiles(A.map(B=>B.path)),C=new Map;for(let B of v){let j=C.get(B.file_path)??[];j.push(B.name),C.set(B.file_path,j)}for(let B of A){let j=this.calculateIdentifierOverlap(h,C.get(B.path)??[]),J=H.get(B.path);if(J&&(J.identifierOverlap=j),j>0){let z=m?j*.8:j*.25;B.decayedScore=(B.decayedScore||0)+z,B.rationale+=` | Symbols: ${(j*100).toFixed(0)}%`}else m&&this.isGenericConceptPath(B.path)&&(B.decayedScore=(B.decayedScore||0)*.82,B.rationale+=" | Symbols: 0% (generic penalty)")}}let F=new Map;for(let v of A){let C=v.path.split("/").pop()?.split(".")[0].replace(/(Controller|Service|Repository|Component|View|Page|Handler|Wrapper|Client|DTO|Interface)$/i,"").toLowerCase();C&&C.length>3&&(F.has(C)||F.set(C,[]),F.get(C).push(v))}for(let[v,C]of F.entries())if(new Set(C.map(j=>j.path.split(".").pop())).size>1)for(let j of C)j.decayedScore=(j.decayedScore||0)+.15,j.rationale+=` | \u{1F310} Polyglot Flow: +0.15 (Linked via '${v}')`;if(m&&A.length>1){let v=Math.min(Math.max(r*4,ge.FILTERED_QUERY_LIMIT_MULTIPLIER*20),A.length),C=[...A].sort((j,J)=>(J.decayedScore||0)-(j.decayedScore||0)).slice(0,v),B=this.computeBm25LikeConfirmation(C.map(j=>j.path),h);for(let j of C){let J=B.get(j.path)||0,z=H.get(j.path);if(z&&(z.lexicalConfirm=J),J>0){let G=Math.min(.95,J*.18);j.decayedScore=(j.decayedScore||0)+G,j.rationale+=` | LexConfirm: +${G.toFixed(2)}`}else z&&z.matchedKeywordCount<=1&&z.phraseCoverage===0&&z.lexicalScore===0&&(j.decayedScore=(j.decayedScore||0)*.85,j.rationale+=" | LexConfirm: 0 (penalty)")}}for(let v of A){let C=H.get(v.path);C&&(v.score=this.calculateConceptEvidenceScore({profile:g.profile,queryKeywordCount:h.length,...C}),v.rationale+=` | Evidence: ${(v.score*100).toFixed(0)}%`)}return A.sort((v,C)=>(C.decayedScore||0)-(v.decayedScore||0)),A.slice(o,o+Math.min(r,ke.MAX_LIMIT))}async findIntentLogMatches(e,t){return(await this.intentLogsRepo.findSemanticMatches(e,t)).map(i=>({id:i.id,missionId:i.mission_id,type:i.type,content:i.content,symbolName:i.symbol_name,filePath:i.file_path,score:i.similarity,decayedScore:i.similarity,rationale:`Similarity: ${(i.similarity*100).toFixed(0)}%`,createdAt:i.created_at}))}buildFtsQuery(e,t){let n=e.trim();if(!n.includes(" "))return`"${n}" OR ${n}*`;let i=n.split(/\s+/).filter(r=>r.length>0);switch(t){case"exact":return`"${n}"`;case"all":return i.map(r=>`${r}*`).join(" ");default:return i.map(r=>`${r}*`).join(" OR ")}}extractPathKeywords(e){let t=e.trim();if(!t)return[];let n=t.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_\/.-]+/).map(r=>r.trim()).filter(r=>r.length>=2),i=new Set;i.add(t.toLowerCase());for(let r of n)i.add(r);return Array.from(i)}isLikelySymbolQuery(e){let t=e.trim();return!t||/[\/\\]/.test(t)?!1:/^[a-z]+(?:[A-Z][a-z0-9]+)+$/.test(t)||!t.includes(" ")&&/[A-Z]/.test(t)}countPathKeywordHits(e,t){let n=e.toLowerCase(),i=t.filter(o=>o.length>=3),r=0;for(let o of i)n.includes(o.toLowerCase())&&(r+=1);return r}scorePathResult(e,t,n,i){let o=this.countPathKeywordHits(e,t)*10;n==="symbol"&&(o+=25);let a=e.toLowerCase(),c=a.includes("/.env")||a.endsWith(".env")||a.endsWith(".yml")||a.endsWith(".yaml")||a.endsWith(".json")||a.endsWith(".md");return i&&c&&(o-=20),i&&a.includes("/tests/")&&(o-=15),o}findSymbolBackedPaths(e,t,n){let i=e.trim().toLowerCase();if(!i)return[];if(/[\/\\]/.test(i))return[];let r=Array.from(new Set([i,...t])).filter(c=>c.length>=3).slice(0,6);if(r.length===0)return[];let o=r.flatMap(c=>{let l=c===i?Math.min(n,60):Math.min(n,30);return this.exportsRepo.findByPartialName(c,l)}),a=new Map;for(let c of o){let l=c.name.toLowerCase(),p=0;l===i&&(p+=6),l.startsWith(i)&&(p+=4),l.includes(i)&&(p+=3);for(let d of t)d.length>=3&&l.includes(d)&&(p+=1);if(p===0)continue;let u=a.get(c.file_path)||0;p>u&&a.set(c.file_path,p)}return Array.from(a.entries()).sort((c,l)=>l[1]-c[1]).slice(0,Math.min(n,ke.MAX_LIMIT)).map(([c])=>c)}rrfMerge(e,t,n,i){let r=new Map,o=i?.vectorWeight??1.2,a=i?.ftsWeight??.8,c=i?.symbolWeight??1.1,l=i?.symbolResults??[];for(let p of e){let u=r.get(p.path)||{path:p.path,row:p.row,vectorRank:null,symbolVectorRank:null,symbolName:null,ftsRank:null,fusedScore:0};u.vectorRank=p.rank,u.fusedScore+=o/(n+p.rank),r.set(p.path,u)}for(let p of t){let u=r.get(p.path)||{path:p.path,row:p.row,vectorRank:null,symbolVectorRank:null,symbolName:null,ftsRank:null,fusedScore:0};u.ftsRank=p.rank,u.fusedScore+=a/(n+p.rank),r.set(p.path,u)}for(let p of l){let u=r.get(p.path)||{path:p.path,row:p.row,vectorRank:null,symbolVectorRank:null,symbolName:null,ftsRank:null,fusedScore:0};u.symbolVectorRank=p.rank,u.symbolName=p.symbolName,u.fusedScore+=c/(n+p.rank),r.set(p.path,u)}return Array.from(r.values()).sort((p,u)=>u.fusedScore-p.fusedScore)}formatRank(e){return e==null?"none":String(e)}getConceptConfidenceFloor(e){switch(e){case"identifier-heavy":return .33;case"lexical-heavy":return .38;case"semantic-exploratory":return .3;default:return .35}}getIntentConfidenceFloor(e){return Math.max(.28,this.getConceptConfidenceFloor(e)-.05)}calculateConceptEvidenceScore(e){let t=Math.min(1,e.lexicalConfirm/Math.max(1,e.queryKeywordCount*1.5)),n=e.profile==="semantic-exploratory"?.72:.58,i=e.profile==="lexical-heavy"?.16:.12,r=e.profile==="identifier-heavy"?.12:.08,o=e.similarity*n+Math.min(1,e.lexicalScore)*.08+e.keywordCoverage*.1+e.phraseCoverage*i+e.identifierOverlap*r+t*.08;return e.hasFtsSignal&&(o+=.04),e.hasSymbolHint?o+=.03:e.hasSymbolVectorSignal&&(o+=.02),e.matchedKeywordCount===0&&e.phraseCoverage===0&&e.lexicalScore===0?o*=e.hasFtsSignal||e.hasSymbolVectorSignal?.72:.6:e.matchedKeywordCount<=1&&e.phraseCoverage===0&&e.identifierOverlap===0&&(o*=.88),e.isGenericPath&&e.matchedKeywordCount<=1&&e.phraseCoverage===0&&e.identifierOverlap===0&&(o*=.85),e.queryKeywordCount===0&&(o*=.75),Math.max(0,Math.min(.97,o))}estimateTokenCount(e){return e?Math.ceil(e.length/4):0}classifyConceptQuery(e,t){let n=e.trim(),i=t.length,r=/\b[a-z]+[A-Z][A-Za-z0-9]*\b/.test(n),o=/\b[a-z0-9]+_[a-z0-9_]+\b/i.test(n),a=/[/.:#()]/.test(n),c=i<=1&&!n.includes(" "),l=n.includes('"')||i>=5&&n.split(/\s+/).length>=6;return r||o||a&&i>=2?{profile:"identifier-heavy",rrfK:45,vectorWeight:1,ftsWeight:.75,symbolWeight:1.45,channelMultiplier:5,lexicalWindowMultiplier:5,earlyRejectThreshold:.012}:l?{profile:"lexical-heavy",rrfK:55,vectorWeight:.95,ftsWeight:1.3,symbolWeight:1,channelMultiplier:7,lexicalWindowMultiplier:8,earlyRejectThreshold:.008}:c||i<=2?{profile:"semantic-exploratory",rrfK:70,vectorWeight:1.35,ftsWeight:.6,symbolWeight:.9,channelMultiplier:4,lexicalWindowMultiplier:4,earlyRejectThreshold:.018}:{profile:"balanced",rrfK:60,vectorWeight:1.15,ftsWeight:.9,symbolWeight:1.2,channelMultiplier:6,lexicalWindowMultiplier:6,earlyRejectThreshold:.01}}extractOrderedConceptTerms(e){return e?e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(t=>t.trim()).filter(t=>t.length>=3):[]}buildNgrams(e,t,n){if(e.length<t)return[];let i=[];for(let r=t;r<=n&&!(e.length<r);r++)for(let o=0;o<=e.length-r;o++)i.push(e.slice(o,o+r).join(" "));return Array.from(new Set(i))}calculatePhraseCoverage(e,t){if(!e||t.length===0)return 0;let n=e.toLowerCase(),i=0;for(let r of t)n.includes(r)&&(i+=1);return i/t.length}calculateIdentifierOverlap(e,t){if(e.length===0||t.length===0)return 0;let n=new Set(e.map(o=>o.toLowerCase())),i=new Set;for(let o of t){let a=o.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(c=>c.trim()).filter(c=>c.length>=3);for(let c of a)i.add(c)}let r=0;for(let o of n)i.has(o)&&(r+=1);return r/n.size}isGenericConceptPath(e){let t=e.toLowerCase();return/(?:^|\/)(index|utils?|helpers?|common|shared|types?|constants?|models?)(?:\/|\.|$)/.test(t)}computeBm25LikeConfirmation(e,t){let n=Array.from(new Set(t.map(u=>u.toLowerCase()).filter(u=>u.length>=3)));if(e.length===0||n.length===0)return new Map;let i=new Set(n),r=[],o=new Map;for(let u of e){let h=(this.filesRepo.getContent(u)??"").toLowerCase().split(/[^a-z0-9_]+/).map(f=>f.trim()).filter(Boolean),m=new Map;for(let f of h)i.has(f)&&m.set(f,(m.get(f)||0)+1);for(let f of n)(m.get(f)||0)>0&&o.set(f,(o.get(f)||0)+1);r.push({path:u,frequencies:m,length:Math.max(h.length,1)})}let a=r.reduce((u,d)=>u+d.length,0)/Math.max(r.length,1),c=1.2,l=.75,p=new Map;for(let u of r){let d=0;for(let h of n){let m=u.frequencies.get(h)||0;if(m===0)continue;let f=o.get(h)||0,_=Math.log(1+(r.length-f+.5)/(f+.5)),g=m*(c+1)/(m+c*(1-l+l*(u.length/Math.max(a,1))));d+=_*g}p.set(u.path,d)}return p}collectConceptSymbolHintPaths(e,t){let n=Array.from(new Set(e.filter(r=>r.length>=4&&!this.isLowSignalConceptKeyword(r)))).slice(0,6);if(n.length===0)return new Set;let i=new Map;for(let r of n){let o=this.exportsRepo.findByPartialName(r,Math.min(t,80));for(let a of o){let c=a.name.toLowerCase(),l=0;c===r&&(l+=3),c.startsWith(r)&&(l+=2),c.includes(r)&&(l+=1),l!==0&&i.set(a.file_path,(i.get(a.file_path)||0)+l)}}return new Set(Array.from(i.entries()).sort((r,o)=>o[1]-r[1]).slice(0,Math.min(t,ke.MAX_LIMIT)).map(([r])=>r))}isLowSignalConceptKeyword(e){return new Set(["type","types","data","update","create","list","item","value","model","helper"]).has(e.toLowerCase())}};q();V();function ki(s){let{fileType:e,layer:t}=s,n={fileType:gt.normalizeFileType(e),layer:t},i=!!(n.fileType?.length||n.layer!=null);return{filters:n,hasFilters:i}}async function $a(s){let e=Ei(s.query??""),t={...s,query:e},n=qn();try{let{repoPath:i}=Ve(t),{query:r,limit:o=ke.DEFAULT_LIMIT,offset:a=0,compact:c=!1,tokenBudget:l}=t;await X(i);let{filters:p,hasFilters:u}=ki(t),h=await new gt(i).searchByConcept(r,o,a,p,u,c,l);try{let m=yi(i);if(m.status==="running"){let[f,_]=m.progress.split("/").map(Number),g=_>0?Math.round(f/_*100):0,b=`\u26A0\uFE0F  Symbol embeddings still warming (${m.progress}, ${g}%) \u2014 symbol-level results may be incomplete. File-level results are fully available.
+`),$}).join(`
+`)}]}}async findConceptMatches(e,t,n,i,r,o=0){let a=be(this.repoPath)||void 0,l=new Wi(this.repoPath).getScorer(),u=new In(this.repoPath).getAncestorMissionIds(),d=this.filesRepo.getGravityMap(u,a),h=Ct.extractKeywords(e),m=h.length>=3,f=this.extractOrderedConceptTerms(e),S=this.buildNgrams(f,2,3),y=this.classifyConceptQuery(e,h),_=m?this.collectConceptSymbolHintPaths(h,Math.max(r*10,100)):new Set,E=Math.min(Math.max((r+o)*y.channelMultiplier,ve.FILTERED_QUERY_LIMIT_MULTIPLIER*20),Fe.MAX_LIMIT),R=Math.min(Math.max(E*4,200),4e3),[T,k,F]=await Promise.all([Promise.resolve(t?this.filesRepo.findWithEmbeddings():[]),Promise.resolve(this.filesRepo.findContentFts(e,E)),Promise.resolve(t?this.exportsRepo.findWithEmbeddings(R):[])]),B=[];if(t){for(let g of T)try{let x=JSON.parse(g.embedding),O=qn(t,x);B.push({row:g,similarity:O,vectorRank:0})}catch{}B.sort((g,x)=>x.similarity-g.similarity);for(let g=0;g<B.length;g++)B[g].vectorRank=g+1}let M=[];if(t){for(let g of F)if(g.embedding)try{let x=JSON.parse(g.embedding),O=qn(t,x);if(O<=0)continue;M.push({row:g,similarity:O,symbolVectorRank:0})}catch{}M.sort((g,x)=>x.similarity-g.similarity);for(let g=0;g<M.length;g++)M[g].symbolVectorRank=g+1}let v=new Map;for(let g of T)v.set(g.path,g);for(let g of k)v.has(g.path)||v.set(g.path,g);let I=new Map,$=[],P=new Set;for(let g of M.slice(0,R)){let x=g.row.file_path,O=I.get(x);if((!O||g.similarity>O.similarity)&&I.set(x,{similarity:g.similarity,symbolRank:g.symbolVectorRank,symbolName:g.row.name}),P.has(x))continue;let C=v.get(x);C||(C=this.filesRepo.findByPath(x),C&&v.set(x,C)),C&&($.push({path:x,rank:g.symbolVectorRank,score:g.similarity,row:C,symbolName:g.row.name}),P.add(x))}let U=this.rrfMerge(B.slice(0,E).map(g=>({path:g.row.path,rank:g.vectorRank,score:g.similarity,row:g.row})),k.slice(0,E).map((g,x)=>({path:g.path,rank:x+1,bm25Rank:g.bm25_rank,row:g})),y.rrfK,{vectorWeight:y.vectorWeight,ftsWeight:y.ftsWeight,symbolWeight:y.symbolWeight,symbolResults:$.slice(0,E)});if(U.length===0)return[];let A=new Map;for(let g of B)A.set(g.row.path,g.similarity);let H=Math.min(U.length,Math.max(r*y.lexicalWindowMultiplier,40)),L=new Set(U.slice(0,H).map(g=>g.path)),D=[],J=new Map;for(let g of U){let x=g.row,O=A.get(x.path)||0,C=I.get(x.path),W=C?.similarity||0,j=Math.max(O,W),Z=g.ftsRank!==null,he=g.symbolVectorRank!==null||!!C,Ce=g.vectorRank!==null||he,Ie=_.has(x.path),gt=L.has(x.path)||Z||Ie||he;if(!gt&&g.fusedScore<y.earlyRejectThreshold&&j<.18&&!i)continue;let fe=gt?this.filesRepo.getContent(x.path):null,$e=ve.ENABLE_LEXICAL_SCORING&&fe?Ct.calculateLexicalScore(fe,e):0,Pe=fe?Ct.calculateKeywordCoverageFromKeywords(fe,h):0,Ee=h.length>0?Math.round(Pe*h.length):0,K=this.calculatePhraseCoverage(`${x.path}
+${x.summary||""}
+${fe||""}`,S),ae=1;if(fe){let ce=/\b(class|function|const|let|var|enum)\s+\w+/.test(fe);if(/export\s+/.test(fe)&&!ce){let at=fe.replace(/\/\/.*$/gm,"").replace(/\/\*[\s\S]*?\*\//g,"");/\b(class|function|const|let|var|enum)\s+\w+/.test(at)||(ae=.1)}}let ot=Ie?.08:he?.1:$e>0||K>0||Z?.14:m?.22:.18;if(Ce&&j<=ot&&!Z)continue;if(h.length>0&&$e===0&&!Z){if(m){if(!Ie&&(Ee===0&&K===0&&j<.4||Ee<=1&&K===0&&j<.34||Ee===1&&j<.3))continue}else if(Ee===0&&j<.24)continue}if(m&&!Ie&&K===0&&Ee<=1&&j<.3&&!Z||i&&!s.matchesFilters(x.path,n,x.mtime,x.classification))continue;let yt=x.mtime>2e9?Math.floor(x.mtime/1e3):x.mtime,Be=Math.floor(Date.now()/1e3)-Rs.SECONDS_PER_YEAR,Ue=Xe.getMultiplier(x.path,x.classification),$t=Ce?l.calculateScore(j,yt||Be):0,we=(g.fusedScore*60+$t*.2)*Ue,V=d[x.path],q=x.classification?Xe.mapClassificationToTier(x.classification):Xe.classify(x.path,{content:fe??void 0}),X=`vector_rank: ${this.formatRank(g.vectorRank)} | symbol_vector_rank: ${this.formatRank(g.symbolVectorRank)} | fts_rank: ${this.formatRank(g.ftsRank)} | fused_score: ${g.fusedScore.toFixed(6)} | query_profile: ${y.profile} | Similarity: ${(j*100).toFixed(0)}%, Tier: ${q}${Ue!==1?` (${Ue}x)`:""}`;if(Ie&&(X+=" | SymbolHint"),C&&(X+=` | SymbolVec: ${C.symbolName}`),$e>0&&(we+=$e*ve.LEXICAL_WEIGHT,X+=` | Lexical: +${$e.toFixed(1)}`),h.length>0)if(Pe>0){let ce=m?Pe*.45:Pe*.35;we+=ce,X+=` | Keywords: ${(Pe*100).toFixed(0)}%`}else X+=" | Keywords: 0%",m&&!Z&&(we*=.55,X+=" (penalty)");if(S.length>0)if(K>0){let ce=m?K*.8:K*.35;we+=ce,X+=` | Phrases: ${(K*100).toFixed(0)}%`}else m&&!Z&&(we*=.72,X+=" | Phrases: 0% (penalty)");V&&(we+=V.score,X+=` | \u{1F525} Gravity: +${V.score.toFixed(1)} (${V.reasons.join(", ")})`),m&&this.isGenericConceptPath(x.path)&&Ee<=1&&K===0&&!Z&&(we*=.75,X+=" | Generic path penalty"),ae<1&&(we*=ae,X+=` | \u{1F4C9} Barrel: x${ae}`);let xe=fe?Ct.extractSnippet(fe,e):void 0;D.push({path:x.path,summary:x.summary||"",score:j,fusedScore:g.fusedScore,vectorRank:g.vectorRank,ftsRank:g.ftsRank,decayedScore:we,rationale:X,snippet:xe}),J.set(x.path,{lexicalScore:$e,keywordCoverage:Pe,matchedKeywordCount:Ee,phraseCoverage:K,similarity:j,hasFtsSignal:Z,hasSymbolHint:Ie,hasSymbolVectorSignal:he,lexicalConfirm:0,identifierOverlap:0,isGenericPath:this.isGenericConceptPath(x.path)})}if(D.length>0&&h.length>0){let g=this.exportsRepo.findByFiles(D.map(O=>O.path)),x=new Map;for(let O of g){let C=x.get(O.file_path)??[];C.push(O.name),x.set(O.file_path,C)}for(let O of D){let C=this.calculateIdentifierOverlap(h,x.get(O.path)??[]),W=J.get(O.path);if(W&&(W.identifierOverlap=C),C>0){let j=m?C*.8:C*.25;O.decayedScore=(O.decayedScore||0)+j,O.rationale+=` | Symbols: ${(C*100).toFixed(0)}%`}else m&&this.isGenericConceptPath(O.path)&&(O.decayedScore=(O.decayedScore||0)*.82,O.rationale+=" | Symbols: 0% (generic penalty)")}}let z=new Map;for(let g of D){let x=g.path.split("/").pop()?.split(".")[0].replace(/(Controller|Service|Repository|Component|View|Page|Handler|Wrapper|Client|DTO|Interface)$/i,"").toLowerCase();x&&x.length>3&&(z.has(x)||z.set(x,[]),z.get(x).push(g))}for(let[g,x]of z.entries())if(new Set(x.map(C=>C.path.split(".").pop())).size>1)for(let C of x)C.decayedScore=(C.decayedScore||0)+.15,C.rationale+=` | \u{1F310} Polyglot Flow: +0.15 (Linked via '${g}')`;if(m&&D.length>1){let g=Math.min(Math.max(r*4,ve.FILTERED_QUERY_LIMIT_MULTIPLIER*20),D.length),x=[...D].sort((C,W)=>(W.decayedScore||0)-(C.decayedScore||0)).slice(0,g),O=this.computeBm25LikeConfirmation(x.map(C=>C.path),h);for(let C of x){let W=O.get(C.path)||0,j=J.get(C.path);if(j&&(j.lexicalConfirm=W),W>0){let Z=Math.min(.95,W*.18);C.decayedScore=(C.decayedScore||0)+Z,C.rationale+=` | LexConfirm: +${Z.toFixed(2)}`}else j&&j.matchedKeywordCount<=1&&j.phraseCoverage===0&&j.lexicalScore===0&&(C.decayedScore=(C.decayedScore||0)*.85,C.rationale+=" | LexConfirm: 0 (penalty)")}}for(let g of D){let x=J.get(g.path);x&&(g.score=this.calculateConceptEvidenceScore({profile:y.profile,queryKeywordCount:h.length,...x}),g.rationale+=` | Evidence: ${(g.score*100).toFixed(0)}%`)}return D.sort((g,x)=>(x.decayedScore||0)-(g.decayedScore||0)),D.slice(o,o+Math.min(r,Fe.MAX_LIMIT))}async findIntentLogMatches(e,t){return(await this.intentLogsRepo.findSemanticMatches(e,t)).map(i=>({id:i.id,missionId:i.mission_id,type:i.type,content:i.content,symbolName:i.symbol_name,filePath:i.file_path,score:i.similarity,decayedScore:i.similarity,rationale:`Similarity: ${(i.similarity*100).toFixed(0)}%`,createdAt:i.created_at}))}buildFtsQuery(e,t){let n=e.trim();if(!n.includes(" "))return`"${n}" OR ${n}*`;let i=n.split(/\s+/).filter(r=>r.length>0);switch(t){case"exact":return`"${n}"`;case"all":return i.map(r=>`${r}*`).join(" ");default:return i.map(r=>`${r}*`).join(" OR ")}}extractPathKeywords(e){let t=e.trim();if(!t)return[];let n=t.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_\/.-]+/).map(r=>r.trim()).filter(r=>r.length>=2),i=new Set;i.add(t.toLowerCase());for(let r of n)i.add(r);return Array.from(i)}isLikelySymbolQuery(e){let t=e.trim();return!t||/[\/\\]/.test(t)?!1:/^[a-z]+(?:[A-Z][a-z0-9]+)+$/.test(t)||!t.includes(" ")&&/[A-Z]/.test(t)}countPathKeywordHits(e,t){let n=e.toLowerCase(),i=t.filter(o=>o.length>=3),r=0;for(let o of i)n.includes(o.toLowerCase())&&(r+=1);return r}scorePathResult(e,t,n,i){let o=this.countPathKeywordHits(e,t)*10;n==="symbol"&&(o+=25);let a=e.toLowerCase(),c=a.includes("/.env")||a.endsWith(".env")||a.endsWith(".yml")||a.endsWith(".yaml")||a.endsWith(".json")||a.endsWith(".md");return i&&c&&(o-=20),i&&a.includes("/tests/")&&(o-=15),o}findSymbolBackedPaths(e,t,n){let i=e.trim().toLowerCase();if(!i)return[];if(/[\/\\]/.test(i))return[];let r=Array.from(new Set([i,...t])).filter(c=>c.length>=3).slice(0,6);if(r.length===0)return[];let o=r.flatMap(c=>{let l=c===i?Math.min(n,60):Math.min(n,30);return this.exportsRepo.findByPartialName(c,l)}),a=new Map;for(let c of o){let l=c.name.toLowerCase(),p=0;l===i&&(p+=6),l.startsWith(i)&&(p+=4),l.includes(i)&&(p+=3);for(let d of t)d.length>=3&&l.includes(d)&&(p+=1);if(p===0)continue;let u=a.get(c.file_path)||0;p>u&&a.set(c.file_path,p)}return Array.from(a.entries()).sort((c,l)=>l[1]-c[1]).slice(0,Math.min(n,Fe.MAX_LIMIT)).map(([c])=>c)}rrfMerge(e,t,n,i){let r=new Map,o=i?.vectorWeight??1.2,a=i?.ftsWeight??.8,c=i?.symbolWeight??1.1,l=i?.symbolResults??[];for(let p of e){let u=r.get(p.path)||{path:p.path,row:p.row,vectorRank:null,symbolVectorRank:null,symbolName:null,ftsRank:null,fusedScore:0};u.vectorRank=p.rank,u.fusedScore+=o/(n+p.rank),r.set(p.path,u)}for(let p of t){let u=r.get(p.path)||{path:p.path,row:p.row,vectorRank:null,symbolVectorRank:null,symbolName:null,ftsRank:null,fusedScore:0};u.ftsRank=p.rank,u.fusedScore+=a/(n+p.rank),r.set(p.path,u)}for(let p of l){let u=r.get(p.path)||{path:p.path,row:p.row,vectorRank:null,symbolVectorRank:null,symbolName:null,ftsRank:null,fusedScore:0};u.symbolVectorRank=p.rank,u.symbolName=p.symbolName,u.fusedScore+=c/(n+p.rank),r.set(p.path,u)}return Array.from(r.values()).sort((p,u)=>u.fusedScore-p.fusedScore)}formatRank(e){return e==null?"none":String(e)}getConceptConfidenceFloor(e){switch(e){case"identifier-heavy":return .33;case"lexical-heavy":return .38;case"semantic-exploratory":return .3;default:return .35}}getIntentConfidenceFloor(e){return Math.max(.28,this.getConceptConfidenceFloor(e)-.05)}calculateConceptEvidenceScore(e){let t=Math.min(1,e.lexicalConfirm/Math.max(1,e.queryKeywordCount*1.5)),n=e.profile==="semantic-exploratory"?.72:.58,i=e.profile==="lexical-heavy"?.16:.12,r=e.profile==="identifier-heavy"?.12:.08,o=e.similarity*n+Math.min(1,e.lexicalScore)*.08+e.keywordCoverage*.1+e.phraseCoverage*i+e.identifierOverlap*r+t*.08;return e.hasFtsSignal&&(o+=.04),e.hasSymbolHint?o+=.03:e.hasSymbolVectorSignal&&(o+=.02),e.matchedKeywordCount===0&&e.phraseCoverage===0&&e.lexicalScore===0?o*=e.hasFtsSignal||e.hasSymbolVectorSignal?.72:.6:e.matchedKeywordCount<=1&&e.phraseCoverage===0&&e.identifierOverlap===0&&(o*=.88),e.isGenericPath&&e.matchedKeywordCount<=1&&e.phraseCoverage===0&&e.identifierOverlap===0&&(o*=.85),e.queryKeywordCount===0&&(o*=.75),Math.max(0,Math.min(.97,o))}estimateTokenCount(e){return e?Math.ceil(e.length/4):0}classifyConceptQuery(e,t){let n=e.trim(),i=t.length,r=/\b[a-z]+[A-Z][A-Za-z0-9]*\b/.test(n),o=/\b[a-z0-9]+_[a-z0-9_]+\b/i.test(n),a=/[/.:#()]/.test(n),c=i<=1&&!n.includes(" "),l=n.includes('"')||i>=5&&n.split(/\s+/).length>=6;return r||o||a&&i>=2?{profile:"identifier-heavy",rrfK:45,vectorWeight:1,ftsWeight:.75,symbolWeight:1.45,channelMultiplier:5,lexicalWindowMultiplier:5,earlyRejectThreshold:.012}:l?{profile:"lexical-heavy",rrfK:55,vectorWeight:.95,ftsWeight:1.3,symbolWeight:1,channelMultiplier:7,lexicalWindowMultiplier:8,earlyRejectThreshold:.008}:c||i<=2?{profile:"semantic-exploratory",rrfK:70,vectorWeight:1.35,ftsWeight:.6,symbolWeight:.9,channelMultiplier:4,lexicalWindowMultiplier:4,earlyRejectThreshold:.018}:{profile:"balanced",rrfK:60,vectorWeight:1.15,ftsWeight:.9,symbolWeight:1.2,channelMultiplier:6,lexicalWindowMultiplier:6,earlyRejectThreshold:.01}}extractOrderedConceptTerms(e){return e?e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(t=>t.trim()).filter(t=>t.length>=3):[]}buildNgrams(e,t,n){if(e.length<t)return[];let i=[];for(let r=t;r<=n&&!(e.length<r);r++)for(let o=0;o<=e.length-r;o++)i.push(e.slice(o,o+r).join(" "));return Array.from(new Set(i))}calculatePhraseCoverage(e,t){if(!e||t.length===0)return 0;let n=e.toLowerCase(),i=0;for(let r of t)n.includes(r)&&(i+=1);return i/t.length}calculateIdentifierOverlap(e,t){if(e.length===0||t.length===0)return 0;let n=new Set(e.map(o=>o.toLowerCase())),i=new Set;for(let o of t){let a=o.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9_]+/).map(c=>c.trim()).filter(c=>c.length>=3);for(let c of a)i.add(c)}let r=0;for(let o of n)i.has(o)&&(r+=1);return r/n.size}isGenericConceptPath(e){let t=e.toLowerCase();return/(?:^|\/)(index|utils?|helpers?|common|shared|types?|constants?|models?)(?:\/|\.|$)/.test(t)}computeBm25LikeConfirmation(e,t){let n=Array.from(new Set(t.map(u=>u.toLowerCase()).filter(u=>u.length>=3)));if(e.length===0||n.length===0)return new Map;let i=new Set(n),r=[],o=new Map;for(let u of e){let h=(this.filesRepo.getContent(u)??"").toLowerCase().split(/[^a-z0-9_]+/).map(f=>f.trim()).filter(Boolean),m=new Map;for(let f of h)i.has(f)&&m.set(f,(m.get(f)||0)+1);for(let f of n)(m.get(f)||0)>0&&o.set(f,(o.get(f)||0)+1);r.push({path:u,frequencies:m,length:Math.max(h.length,1)})}let a=r.reduce((u,d)=>u+d.length,0)/Math.max(r.length,1),c=1.2,l=.75,p=new Map;for(let u of r){let d=0;for(let h of n){let m=u.frequencies.get(h)||0;if(m===0)continue;let f=o.get(h)||0,S=Math.log(1+(r.length-f+.5)/(f+.5)),y=m*(c+1)/(m+c*(1-l+l*(u.length/Math.max(a,1))));d+=S*y}p.set(u.path,d)}return p}collectConceptSymbolHintPaths(e,t){let n=Array.from(new Set(e.filter(r=>r.length>=4&&!this.isLowSignalConceptKeyword(r)))).slice(0,6);if(n.length===0)return new Set;let i=new Map;for(let r of n){let o=this.exportsRepo.findByPartialName(r,Math.min(t,80));for(let a of o){let c=a.name.toLowerCase(),l=0;c===r&&(l+=3),c.startsWith(r)&&(l+=2),c.includes(r)&&(l+=1),l!==0&&i.set(a.file_path,(i.get(a.file_path)||0)+l)}}return new Set(Array.from(i.entries()).sort((r,o)=>o[1]-r[1]).slice(0,Math.min(t,Fe.MAX_LIMIT)).map(([r])=>r))}isLowSignalConceptKeyword(e){return new Set(["type","types","data","update","create","list","item","value","model","helper"]).has(e.toLowerCase())}};G();Y();function zi(s){let{fileType:e,layer:t}=s,n={fileType:Lt.normalizeFileType(e),layer:t},i=!!(n.fileType?.length||n.layer!=null);return{filters:n,hasFilters:i}}async function nc(s){let e=$i(s.query??""),t={...s,query:e},n=ri();try{let{repoPath:i}=st(t),{query:r,limit:o=Fe.DEFAULT_LIMIT,offset:a=0,compact:c=!1,tokenBudget:l}=t;await ie(i);let{filters:p,hasFilters:u}=zi(t),h=await new Lt(i).searchByConcept(r,o,a,p,u,c,l);try{let m=Li(i);if(m.status==="running"){let[f,S]=m.progress.split("/").map(Number),y=S>0?Math.round(f/S*100):0,_=`\u26A0\uFE0F  Symbol embeddings still warming (${m.progress}, ${y}%) \u2014 symbol-level results may be incomplete. File-level results are fully available.
 
-`;h.content?.[0]?.type==="text"&&(h.content[0].text=b+h.content[0].text)}}catch{}return $u(i,r,"concept"),n(),h}catch(i){return S.error({error:i,args:s},"Concept Search failed"),n(),await Ft(),{content:[{type:"text",text:`Concept Search failed: ${i instanceof Error?i.message:String(i)}`}],isError:!0}}}function $u(s,e,t){try{let n=O.getInstance(s),i=me(s);n.searchHistory.record(e,t,i)}catch(n){let i=me(s);S.error({module:"search",repoPath:s,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:i},"Failed to record search history"),Ft()}}q();V();async function Ds(s){let e=Ei(s.query??""),t={...s,query:e},n=qn();try{let{repoPath:i}=Ve(t),{query:r,limit:o=ke.DEFAULT_LIMIT,offset:a=0,matchMode:c="any"}=t;await X(i);let{filters:l,hasFilters:p}=ki(t),d=await new gt(i).searchBySymbol(r,o,a,l,p,c);return Au(i,r,"symbol"),n(),d}catch(i){return S.error({error:i,args:s},"Symbol Search failed"),n(),await Ft(),{content:[{type:"text",text:`Symbol Search failed: ${i instanceof Error?i.message:String(i)}`}],isError:!0}}}function Au(s,e,t){try{let n=O.getInstance(s),i=me(s);n.searchHistory.record(e,t,i)}catch(n){let i=me(s);S.error({module:"search",repoPath:s,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:i},"Failed to record search history"),Ft()}}V();q();import Yt from"path";function Aa(s,e){let t=s.findContentByToken(e,100);return{count:t.length,files:t}}async function Pa(s){let{repoPath:e,query:t,key:n="",kind:i,limit:r=50,showUsage:o=!1}=s,a=n||t;if(!a&&!i)return{content:[{type:"text",text:'Error: Either "key" or "kind" parameter is required.'}]};await X(e);let c=O.getInstance(e),{configs:l,files:p}=c;if(a){S.info({repoPath:e,key:a},"Searching for config key in DB...");let m=l.findByKey(a,r);if(m.length===0)return{content:[{type:"text",text:`No configuration found for key: ${a}`}]};if(o){let g=m.map(R=>{let k=Aa(p,R.key),D=k.count===0?"\u26A0\uFE0F ORPHANED":`\u2713 ${k.count} usage(s)`;return{file:Yt.relative(e,R.file_path),key:R.key,value:R.value,kind:R.kind,usageCount:k.count,usageFiles:k.files.slice(0,5).map(U=>Yt.relative(e,U)),status:D}});g.sort((R,k)=>R.usageCount===0&&k.usageCount>0?-1:k.usageCount===0&&R.usageCount>0?1:R.usageCount-k.usageCount);let b=g.filter(R=>R.usageCount===0).length;return{content:[{type:"text",text:(b>0?`# Configuration Search: "${a}" (with Usage Analysis)
+`;h.content?.[0]?.type==="text"&&(h.content[0].text=_+h.content[0].text)}}catch{}return Zu(i,r,"concept"),n(),h}catch(i){return w.error({error:i,args:s},"Concept Search failed"),n(),await Qt(),{content:[{type:"text",text:`Concept Search failed: ${i instanceof Error?i.message:String(i)}`}],isError:!0}}}function Zu(s,e,t){try{let n=N.getInstance(s),i=be(s);n.searchHistory.record(e,t,i)}catch(n){let i=be(s);w.error({module:"search",repoPath:s,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:i},"Failed to record search history"),Qt()}}G();Y();async function Zs(s){let e=$i(s.query??""),t={...s,query:e},n=ri();try{let{repoPath:i}=st(t),{query:r,limit:o=Fe.DEFAULT_LIMIT,offset:a=0,matchMode:c="any"}=t;await ie(i);let{filters:l,hasFilters:p}=zi(t),d=await new Lt(i).searchBySymbol(r,o,a,l,p,c);return Xu(i,r,"symbol"),n(),d}catch(i){return w.error({error:i,args:s},"Symbol Search failed"),n(),await Qt(),{content:[{type:"text",text:`Symbol Search failed: ${i instanceof Error?i.message:String(i)}`}],isError:!0}}}function Xu(s,e,t){try{let n=N.getInstance(s),i=be(s);n.searchHistory.record(e,t,i)}catch(n){let i=be(s);w.error({module:"search",repoPath:s,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:i},"Failed to record search history"),Qt()}}Y();G();import ln from"path";function ic(s,e){let t=s.findContentByToken(e,100);return{count:t.length,files:t}}async function sc(s){let{repoPath:e,query:t,key:n="",kind:i,limit:r=50,showUsage:o=!1}=s,a=n||t;if(!a&&!i)return{content:[{type:"text",text:'Error: Either "key" or "kind" parameter is required.'}]};await ie(e);let c=N.getInstance(e),{configs:l,files:p}=c;if(a){w.info({repoPath:e,key:a},"Searching for config key in DB...");let m=l.findByKey(a,r);if(m.length===0)return{content:[{type:"text",text:`No configuration found for key: ${a}`}]};if(o){let y=m.map(T=>{let k=ic(p,T.key),F=k.count===0?"\u26A0\uFE0F ORPHANED":`\u2713 ${k.count} usage(s)`;return{file:ln.relative(e,T.file_path),key:T.key,value:T.value,kind:T.kind,usageCount:k.count,usageFiles:k.files.slice(0,5).map(B=>ln.relative(e,B)),status:F}});y.sort((T,k)=>T.usageCount===0&&k.usageCount>0?-1:k.usageCount===0&&T.usageCount>0?1:T.usageCount-k.usageCount);let _=y.filter(T=>T.usageCount===0).length;return{content:[{type:"text",text:(_>0?`# Configuration Search: "${a}" (with Usage Analysis)
 
-\u26A0\uFE0F **${b} orphaned var(s)** (defined but never used in code)
+\u26A0\uFE0F **${_} orphaned var(s)** (defined but never used in code)
 
 Found ${m.length} match(es):
 
@@ -821,48 +876,48 @@ Found ${m.length} match(es):
 
 Found ${m.length} match(es), all in use:
 
-`)+g.map(R=>{let k=`## ${R.file} (${R.kind}) ${R.status}
-**${R.key}**: \`${R.value}\``;return R.usageCount>0&&R.usageFiles.length>0&&(k+=`
-> Used in: ${R.usageFiles.map(D=>`\`${D}\``).join(", ")}${R.usageCount>5?` (+${R.usageCount-5} more)`:""}`),k}).join(`
+`)+y.map(T=>{let k=`## ${T.file} (${T.kind}) ${T.status}
+**${T.key}**: \`${T.value}\``;return T.usageCount>0&&T.usageFiles.length>0&&(k+=`
+> Used in: ${T.usageFiles.map(F=>`\`${F}\``).join(", ")}${T.usageCount>5?` (+${T.usageCount-5} more)`:""}`),k}).join(`
 
-`)}]}}let f=m.map(g=>({file:Yt.relative(e,g.file_path),key:g.key,value:g.value,kind:g.kind}));return{content:[{type:"text",text:`# Configuration Search: "${a}"
+`)}]}}let f=m.map(y=>({file:ln.relative(e,y.file_path),key:y.key,value:y.value,kind:y.kind}));return{content:[{type:"text",text:`# Configuration Search: "${a}"
 
 Found ${m.length} match(es):
 
-`+f.map(g=>`## ${g.file} (${g.kind})
-**${g.key}**: \`${g.value}\``).join(`
+`+f.map(y=>`## ${y.file} (${y.kind})
+**${y.key}**: \`${y.value}\``).join(`
 
-`)+"\n\n> \u{1F4A1} **Tip**: Use `showUsage: true` to see usage counts and identify orphaned vars."}]}}let u=l.findByKind(i||null,r);if(o){let m=u.map(b=>{let w=Aa(p,b.key);return{file:Yt.relative(e,b.file_path),key:b.key,value:b.value,kind:b.kind,usageCount:w.count,usageFiles:w.files.slice(0,3).map(x=>Yt.relative(e,x)),status:w.count===0?"ORPHANED":"in-use"}});m.sort((b,w)=>b.usageCount===0&&w.usageCount>0?-1:w.usageCount===0&&b.usageCount>0?1:b.usageCount-w.usageCount);let f=m.filter(b=>b.usageCount===0).length,_=m.length,g=`# Config Discovery (${i||"all"}) with Usage Analysis
+`)+"\n\n> \u{1F4A1} **Tip**: Use `showUsage: true` to see usage counts and identify orphaned vars."}]}}let u=l.findByKind(i||null,r);if(o){let m=u.map(_=>{let E=ic(p,_.key);return{file:ln.relative(e,_.file_path),key:_.key,value:_.value,kind:_.kind,usageCount:E.count,usageFiles:E.files.slice(0,3).map(R=>ln.relative(e,R)),status:E.count===0?"ORPHANED":"in-use"}});m.sort((_,E)=>_.usageCount===0&&E.usageCount>0?-1:E.usageCount===0&&_.usageCount>0?1:_.usageCount-E.usageCount);let f=m.filter(_=>_.usageCount===0).length,S=m.length,y=`# Config Discovery (${i||"all"}) with Usage Analysis
 
-`;return g+=`**Summary**: ${_} config(s) found, ${f} orphaned
+`;return y+=`**Summary**: ${S} config(s) found, ${f} orphaned
 
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-Try: shadow_inspect_symbol({ symbolName: "${E[0].name}", context: "full" }) to see the class body.`}]}}let I=o.exports.findFuzzyCandidates(i).map(N=>N.name),M=bn(i,I,50,3);if(M.length>0){let N=M.map($=>`  \u2022 \`${$.match}\` (${$.score}% match)`).join(`
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+`),i=[],r=0;for(let u=0;u<Math.min(n.length,50);u++){let d=n[u].trim();if(d.startsWith("import ")||d.startsWith("from ")||d.startsWith("export ")&&d.includes(" from "))r=u+1;else if(d&&!d.startsWith("//")&&!d.startsWith("/*")&&!d.startsWith("*")&&d!==""&&r>0)break}r>0&&(i.push(...n.slice(0,r)),i.push(""));let o=[...t].sort((u,d)=>u.startLine-d.startLine),a=0,c=0;for(let u of o)if(u.isTarget){i.push(`// \u2501\u2501\u2501 REQUESTED: ${u.name} \u2501\u2501\u2501`);let d=n.slice(u.startLine-1,u.endLine);i.push(...d),i.push("// \u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501"),i.push(""),c++}else{let d=u.signature||pd(n,u.startLine-1,u.kind);d&&(i.push(`${d}`),i.push(`  /* implementation: ${u.lineCount} lines */`),i.push(""),a++)}let l=o[o.length-1];if(l)for(let u=l.endLine;u<n.length;u++){let d=n[u].trim();if(d==="}"||d==="};"){i.push(n[u]);break}else if(d&&!d.startsWith("//"))break}return{foldedSource:i.join(`
+`),totalOriginalLines:n.length,foldedToLines:i.length,siblingsShown:c,siblingsFolded:a}}function pd(s,e,t){let n=s[e];if(t.includes("Function")||t.includes("Method")||t.includes("Arrow")){let i="";for(let r=e;r<Math.min(e+5,s.length);r++)if(i+=s[r],i.includes("{")||i.includes("=>")){let o=i.indexOf("{");o>0&&(i=i.substring(0,o).trim());break}return i.trim()}return n}function ud(s,e=","){let t=[],n="",i=0,r=0,o=0,a=0,c=null,l=!1;for(let u of s){if(c){if(n+=u,l){l=!1;continue}if(u==="\\"){l=!0;continue}u===c&&(c=null);continue}if(u==='"'||u==="'"||u==="`"){c=u,n+=u;continue}if(u==="("?i++:u===")"?i=Math.max(0,i-1):u==="{"?r++:u==="}"?r=Math.max(0,r-1):u==="["?o++:u==="]"?o=Math.max(0,o-1):u==="<"?a++:u===">"&&(a=Math.max(0,a-1)),u===e&&i===0&&r===0&&o===0&&a===0){let d=n.trim();d&&t.push(d),n="";continue}n+=u}let p=n.trim();return p&&t.push(p),t}function dd(s){let e=s.indexOf("(");if(e<0)return null;let t=0;for(let n=e;n<s.length;n++){let i=s[n];if(i==="("&&t++,i===")"&&(t--,t===0))return{start:e,end:n}}return null}function Bi(s,e){let t=0,n=0,i=0,r=0,o=null,a=!1;for(let c=0;c<s.length;c++){let l=s[c];if(o){a?a=!1:l==="\\"?a=!0:l===o&&(o=null);continue}if(l==='"'||l==="'"||l==="`"){o=l;continue}if(l==="("?t++:l===")"?t=Math.max(0,t-1):l==="{"?n++:l==="}"?n=Math.max(0,n-1):l==="["?i++:l==="]"?i=Math.max(0,i-1):l==="<"?r++:l===">"&&(r=Math.max(0,r-1)),l===e&&t===0&&n===0&&i===0&&r===0)return c}return-1}function md(s){let t=s.trim(),n=!1;t.startsWith("...")&&(n=!0,t=t.slice(3).trim());let i=Bi(t,"="),r=i>=0,o=r?t.slice(0,i).trim():t,a=r?t.slice(i+1).trim():void 0,c=Bi(o,":"),l=(c>=0?o.slice(0,c):o).replace(/^(?:readonly\s+)?(?:public|private|protected)\s+/,"").trim(),p=l.includes("?"),u=l.replace(/\?/g,"").trim(),d=c>=0&&o.slice(c+1).trim()||null;return{name:u||"(anonymous)",type:d,optional:p,rest:n,hasDefault:r,...a?{defaultValue:a}:{}}}function hd(s,e){let t=s.slice(e+1).trim();if(!t)return null;let n=t.indexOf("=>");if(n>=0){let r=t.slice(0,n).trim(),o=Bi(r,":");if(o>=0){let c=r.slice(o+1).trim();if(c)return c}return t.slice(n+2).replace(/\{.*$/,"").trim()||null}let i=Bi(t,":");return i>=0&&t.slice(i+1).replace(/\{.*$/,"").trim()||null}function fd(s){let e=s.trim();if(!e)return[];if(e==="*")return["*"];if(e.startsWith("[")&&e.endsWith("]"))try{let n=JSON.parse(e);if(Array.isArray(n))return n.map(i=>String(i).trim()).filter(Boolean).map(i=>i.replace(/^['"`]|['"`]$/g,""))}catch{}return e.replace(/^\{|\}$/g,"").split(",").map(n=>n.trim()).filter(Boolean).map(n=>n.replace(/^type\s+/,"")).map(n=>n.split(/\s+as\s+/i)[0]?.trim()||n).map(n=>n.replace(/^['"`]|['"`]$/g,""))}function gd(s,e,t){let n=s?.replace(/\s+/g," ").trim()||null,r=n?.match(/\b(public|private|protected)\b/)?.[1]||null,a=(n?.match(/\bfunction\s*\*?\s+([A-Za-z_$][A-Za-z0-9_$]*)/)||n?.match(/\bclass\s+([A-Za-z_$][A-Za-z0-9_$]*)/)||n?.match(/^(?:export\s+)?(?:async\s+)?([A-Za-z_$][A-Za-z0-9_$]*)\s*(?:<[^>]*>)?\s*\(/))?.[1]||e,c=n?dd(n):null,l=n&&c?n.slice(c.start+1,c.end):"",p=l?ud(l).map(md):[],u=n&&c?hd(n,c.end):null,d=n?.match(/(?:function\s+[A-Za-z_$][A-Za-z0-9_$]*|[A-Za-z_$][A-Za-z0-9_$]*)\s*(<[^>]+>)\s*\(/);return{raw:s,normalized:n,symbol:a,kind:t,visibility:r,isStatic:/\bstatic\b/.test(n||""),isAsync:/\basync\b/.test(n||""),isGenerator:/function\s*\*/.test(n||"")||/\*\s*[A-Za-z_$][A-Za-z0-9_$]*\s*\(/.test(n||""),isArrowFunction:/=>/.test(n||""),typeParameters:d?.[1]||null,parameters:p,parameterCount:p.length,returnType:u}}function yd(s,e,t=5){let n=new Map;for(let o of s){let a=n.get(o.file_path)||{classification:o.classification||null,importedSymbols:new Set,wildcard:!1},c=fd(o.imported_symbols);(c.length===0||c.includes("*"))&&(a.wildcard=!0);for(let l of c)a.importedSymbols.add(l);!a.classification&&o.classification&&(a.classification=o.classification),n.set(o.file_path,a)}let i=Array.from(n.entries()).map(([o,a])=>({file:ac.relative(e,o),classification:a.classification,importedSymbols:a.importedSymbols.size>0?Array.from(a.importedSymbols).sort():["*"],wildcard:a.wildcard})),r=i.slice(0,Math.max(1,t));return{totalVerifiedCallers:i.length,showing:r.length,wildcardCallers:i.filter(o=>o.wildcard).length,topCallers:r.map(({wildcard:o,...a})=>a)}}async function pn(s){let{repoPath:e,filePath:t,resolver:n}=st(s),i=String(s.symbolName),r=s.context||"definition";if(t&&!n.isWithinRoot(t))return{content:[{type:"text",text:`Error: Access denied. Path ${t} is outside the repository root.`}],isError:!0};await ie(e);let o=N.getInstance(e),a=[];if(i.includes(".")){let[v,I]=i.split(".");a=o.exports.findMemberCandidates(v,I,t)}else a=o.exports.findDefinitionCandidates(i,t);if(a.length===0){let v=o.exports.findPotentialParents(i);if(v.length>0){let U=v.map(A=>`\`${A.name}\` (in ${n.getRelative(A.file_path)})`).join(", ");return{content:[{type:"text",text:`Symbol "${i}" not found as a top-level export.
+However, it likely exists inside: ${U}.
+Try: shadow_inspect_symbol({ symbolName: "${v[0].name}", context: "full" }) to see the class body.`}]}}let $=o.exports.findFuzzyCandidates(i).map(U=>U.name),P=Ln(i,$,50,3);if(P.length>0){let U=P.map(A=>`  \u2022 \`${A.match}\` (${A.score}% match)`).join(`
 `);return{content:[{type:"text",text:`Error: Symbol "${i}" not found in the index.
 
 Suggestions:
-${N}
+${U}
 
 Next steps:
   \u2022 Search semantically: shadow_search_concept({ query: "${i}" })
@@ -871,8 +926,8 @@ Next steps:
 Next steps:
   \u2022 Search for it: shadow_search_concept({ query: "${i}" })
   \u2022 Try with file path: shadow_inspect_symbol({ symbolName: "${i}", filePath: "..." })
-`}]}}let c=a[0];if(c.kind==="ExportSpecifier"||c.kind==="ExportAllDeclaration"){let E=o.imports.findImportSource(c.file_path,i);if(E&&E.resolved_path)return Kt({...s,filePath:E.resolved_path})}let l=zu.readFileSync(c.file_path,"utf8"),p=l.split(`
-`),u=c.end_line-c.start_line+1,d=150,h,m=!1,f=null;if(r==="definition"&&u>d){let T=o.exports.findSiblings(c.file_path).map(I=>({name:I.name,kind:I.kind,signature:I.signature||"",startLine:I.start_line,endLine:I.end_line,lineCount:I.end_line-I.start_line+1,isTarget:I.name===c.name&&I.start_line===c.start_line,parentName:I.parent_name}));if(T.length>1){f=Uu(l,{name:c.name,startLine:c.start_line,endLine:c.end_line},T);let I=n.getRelative(c.file_path);h=f.foldedSource+`
+`}]}}let c=a[0];if(c.kind==="ExportSpecifier"||c.kind==="ExportAllDeclaration"){let v=o.imports.findImportSource(c.file_path,i);if(v&&v.resolved_path)return pn({...s,filePath:v.resolved_path})}let l=cd.readFileSync(c.file_path,"utf8"),p=l.split(`
+`),u=c.end_line-c.start_line+1,d=150,h,m=!1,f=null;if(r==="definition"&&u>d){let I=o.exports.findSiblings(c.file_path).map($=>({name:$.name,kind:$.kind,signature:$.signature||"",startLine:$.start_line,endLine:$.end_line,lineCount:$.end_line-$.start_line+1,isTarget:$.name===c.name&&$.start_line===c.start_line,parentName:$.parent_name}));if(I.length>1){f=ld(l,{name:c.name,startLine:c.start_line,endLine:c.end_line},I);let $=n.getRelative(c.file_path);h=f.foldedSource+`
 
 \u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501
 \u{1F4CA} Semantic Fold Applied (context: "definition")
@@ -882,29 +937,29 @@ Next steps:
 Target Symbol: ${c.name}
 \u{1F4A1} Need more context?
    \u2022 Full symbol + dependencies + usage: shadow_inspect_symbol({ symbolName: "${c.name}", context: "full" })
-   \u2022 ALL symbols in this file: shadow_inspect_file({ filePath: "${I}", detailLevel: "signatures" })
+   \u2022 ALL symbols in this file: shadow_inspect_file({ filePath: "${$}", detailLevel: "signatures" })
 \u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501`,m=!0}else h=p.slice(c.start_line-1,c.start_line-1+d).join(`
 `)+`
 
 ... (truncated ${u-d} lines)`,m=!0}else h=p.slice(c.start_line-1,c.end_line).join(`
-`);let _=c.parent_name?`${c.parent_name}.${c.name}`:c.name,g=o.exports.findHydratedById(c.id),b=c.parent_name||c.name,w=o.imports.findProxies(c.file_path).map(E=>E.file_path),x=Array.from(new Set([c.file_path,...w])),R=o.imports.findVerifiedDependents(x,b),k=Ku(R,e),D=Yu(c.signature,_,c.kind),U={name:_,kind:c.kind,signature:D,file:n.getRelative(c.file_path),startLine:c.start_line,endLine:c.end_line,totalLines:u,...m&&{truncated:!0,previewLines:d},classification:c.classification,callerSummary:k,source:h};if(g&&g.recent_intents&&g.recent_intents.length>0){let E={},T=Date.now();for(let I of g.recent_intents){if(I.is_crystallized&&I.type!=="crystal")continue;let M=I.created_at;M<1e10&&(M*=1e3);let N=new Date(M).getTime(),$=T-N,W="just now";if($>0){let L=Math.floor($/1e3),A=Math.floor(L/60),H=Math.floor(A/60),F=Math.floor(H/24);F>0?W=`${F}d ago`:H>0?W=`${H}h ago`:A>0?W=`${A}m ago`:W=`${L}s ago`}E[I.type]||(E[I.type]=[]),E[I.type].push(`[${W}] ${I.content}`)}U.intelligence={working_set_of:g.active_missions.map(I=>`Mission #${I.id}: ${I.name}`),total_intents:g.intent_log_count,recent_activity:E}}else g&&(U.intelligence={working_set_of:g.active_missions.map(E=>`Mission #${E.id}: ${E.name}`),total_intents:g.intent_log_count,recent_activity:null});try{let{generateEmbedding:E}=await Promise.resolve().then(()=>(Ae(),ot)),T=`Symbol: ${U.name}
+`);let S=c.parent_name?`${c.parent_name}.${c.name}`:c.name,y=o.exports.findHydratedById(c.id),_=c.parent_name||c.name,E=o.imports.findProxies(c.file_path).map(v=>v.file_path),R=Array.from(new Set([c.file_path,...E])),T=o.imports.findVerifiedDependents(R,_),k=yd(T,e),F=gd(c.signature,S,c.kind),B={name:S,kind:c.kind,signature:F,file:n.getRelative(c.file_path),startLine:c.start_line,endLine:c.end_line,totalLines:u,...m&&{truncated:!0,previewLines:d},classification:c.classification,callerSummary:k,source:h};if(y&&y.recent_intents&&y.recent_intents.length>0){let v={},I=Date.now();for(let $ of y.recent_intents){if($.is_crystallized&&$.type!=="crystal")continue;let P=$.created_at;P<1e10&&(P*=1e3);let U=new Date(P).getTime(),A=I-U,H="just now";if(A>0){let L=Math.floor(A/1e3),D=Math.floor(L/60),J=Math.floor(D/60),z=Math.floor(J/24);z>0?H=`${z}d ago`:J>0?H=`${J}h ago`:D>0?H=`${D}m ago`:H=`${L}s ago`}v[$.type]||(v[$.type]=[]),v[$.type].push(`[${H}] ${$.content}`)}B.intelligence={working_set_of:y.active_missions.map($=>`Mission #${$.id}: ${$.name}`),total_intents:y.intent_log_count,recent_activity:v}}else y&&(B.intelligence={working_set_of:y.active_missions.map(v=>`Mission #${v.id}: ${v.name}`),total_intents:y.intent_log_count,recent_activity:null});try{let{generateEmbedding:v}=await Promise.resolve().then(()=>(qe(),Et)),I=`Symbol: ${B.name}
 Signature: ${c.signature||""}
-File: ${U.file}`,I=await E(T);if(I){let M=o.intentLogs.findSemanticMatches(I,3,c.id),N=new Promise(W=>setTimeout(()=>W([]),100)),$=await Promise.race([M,N]);$&&$.length>0&&(U.intelligence||(U.intelligence={}),U.intelligence.related_knowledge=$.map(W=>({type:W.type,content:W.content,from_symbol:W.symbol_name,similarity:`${(W.similarity*100).toFixed(0)}%`})))}}catch{}if(r==="definition")return{content:[{type:"text",text:JSON.stringify(U,null,2)}]};let P={definition:U,dependencies:o.imports.getImportsForFile(c.file_path).map(E=>({module:E.module_specifier,symbols:E.imported_symbols,relativePath:E.resolved_path?Da.relative(e,E.resolved_path):null})),callerSummary:k};return P.verifiedUsages=k.topCallers,{content:[{type:"text",text:JSON.stringify(P,null,2)}]}}async function Oa(s,e){let t=_n.resolve(e.dir);await Y(async()=>{pe("Semantic Concept Search");let n=Re();n.start(`Analyzing intent: "${y.bold(s)}"...`);try{let i=await $a({repoPath:t,query:s});n.stop("Analysis complete.");let r=i.content[0].text;if(r.includes("Found")){let a=r.split("## ").slice(1).map(c=>{let[l,...p]=c.split(`
+File: ${B.file}`,$=await v(I);if($){let P=o.intentLogs.findSemanticMatches($,3,c.id),U=new Promise(H=>setTimeout(()=>H([]),100)),A=await Promise.race([P,U]);A&&A.length>0&&(B.intelligence||(B.intelligence={}),B.intelligence.related_knowledge=A.map(H=>({type:H.type,content:H.content,from_symbol:H.symbol_name,similarity:`${(H.similarity*100).toFixed(0)}%`})))}}catch{}if(r==="definition")return{content:[{type:"text",text:JSON.stringify(B,null,2)}]};let M={definition:B,dependencies:o.imports.getImportsForFile(c.file_path).map(v=>({module:v.module_specifier,symbols:v.imported_symbols,relativePath:v.resolved_path?ac.relative(e,v.resolved_path):null})),callerSummary:k};return M.verifiedUsages=k.topCallers,{content:[{type:"text",text:JSON.stringify(M,null,2)}]}}async function cc(s,e){let t=Mn.resolve(e.dir);await Q(async()=>{ge("Semantic Concept Search");let n=Oe();n.start(`Analyzing intent: "${b.bold(s)}"...`);try{let i=await nc({repoPath:t,query:s});n.stop("Analysis complete.");let r=i.content[0].text;if(r.includes("Found")){let a=r.split("## ").slice(1).map(c=>{let[l,...p]=c.split(`
 
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-`)}]}}return{content:[{type:"text",text:`Unknown action: ${t}`}],isError:!0}}async function za(s){let[e,t="."]=s;if(!e||!["install","uninstall","status"].includes(e)){console.log(""),console.log(`  ${y.bold("Usage: ")} liquid-shadow hooks <install|uninstall|status> [path]`),console.log(""),console.log(`  ${y.bold("Commands: ")}`),console.log(`    ${y.cyan("install")}    Install git hooks for automatic index refresh and symbol healing`),console.log(`    ${y.cyan("uninstall")}  Remove installed git hooks`),console.log(`    ${y.cyan("status")}     Check git hooks installation status`),console.log(""),console.log(`  ${y.bold("Examples: ")}`),console.log("    liquid-shadow hooks install ."),console.log("    liquid-shadow hooks status /path/to/repo"),console.log("");return}await Y(async()=>{let n=Uc("path").resolve(t);switch(e){case"install":{let i=await Li({repoPath:n,action:"install",enableAutoRefresh:!0,enableSymbolHealing:!0});if(console.log(""),console.log(`  ${y.green("\u2714")} ${y.bold("Git hooks installed successfully")}`),console.log(""),i.content&&i.content[0])try{let r=JSON.parse(i.content[0].text);console.log(`  ${y.bold("Installed hooks: ")}`),r.hooks.forEach(o=>{console.log(`    ${y.cyan("\u2022")} ${o}`)}),console.log("")}catch{console.log(i.content[0].text)}break}case"uninstall":{await Li({repoPath:n,action:"remove"}),console.log(""),console.log(`  ${y.green("\u2714")} ${y.bold("Git hooks uninstalled successfully")}`),console.log("");break}case"status":{let i=await Li({repoPath:n,action:"status"});if(console.log(""),console.log(`  ${y.bold("Git Hooks Status")}`),console.log(""),i.content&&i.content[0])try{let r=JSON.parse(i.content[0].text);r.installed&&r.installed.length>0?(console.log(`  ${y.green("\u2714")} Installed hooks:`),r.installed.forEach(o=>{console.log(`    ${y.cyan("\u2022")} ${o}`)})):console.log(`  ${y.yellow("\u26A0")} No hooks installed`),r.missing&&r.missing.length>0&&(console.log(""),console.log(`  ${y.dim("Missing hooks: ")}`),r.missing.forEach(o=>{console.log(`    ${y.dim("\u2022")} ${o}`)}))}catch{console.log(i.content[0].text)}console.log("");break}}})}V();q();import Qu from"path";import Xu from"fs";var Ua=S.child({module:"mcp:tools:workspace:list"});async function ja(s){let{repoPaths:e,status:t,limit:n,summarize:i=!1}=s;Ua.info({repoCount:e.length,status:t,summarize:i},"Getting workspace missions");let r=[];for(let a of e)if(Xu.existsSync(a))try{let{missions:c}=O.getInstance(a),l=c.findAll(t);for(let p of l){let u=c.getLinks(p.id);r.push({...p,repo_path:a,repo_name:Qu.basename(a),cross_repo_links:u})}}catch(c){Ua.error({error:c,repoPath:a},"Failed to query repo missions")}if(r.sort((a,c)=>{let l=d=>d==="in-progress"?0:d==="verifying"?1:2,p=l(a.status),u=l(c.status);return p!==u?p-u:(a.created_at||0)-(c.created_at||0)}),i||r.length>50&&!n){let a=n||20,c=r.slice(0,a),l=r.reduce((u,d)=>(u[d.status]=(u[d.status]||0)+1,u),{}),p=r.reduce((u,d)=>(u[d.repo_name]=(u[d.repo_name]||0)+1,u),{});return{content:[{type:"text",text:JSON.stringify({summary:{total_missions:r.length,by_status:l,by_repo:p,showing_top:a},top_missions:c,hint:`Showing top ${a} of ${r.length} missions. Use limit to adjust or summarize:false for full list.`},null,2)}]}}let o=n?r.slice(0,n):r;return{content:[{type:"text",text:JSON.stringify({total_missions:r.length,showing:o.length,missions:o},null,2)}]}}V();q();var Zu=S.child({module:"mcp:tools:workspace:link"});async function Ba(s){let{parentRepoPath:e,parentMissionId:t,childRepoPath:n,childMissionId:i,relationship:r="related"}=s;Zu.info({parentRepoPath:e,childRepoPath:n},"Linking cross-repo missions");let{missions:o}=O.getInstance(e),{missions:a}=O.getInstance(n);try{let c=o.findById(t),l=a.findById(i);if(!c)throw new Error(`Parent mission ${t} not found`);if(!l)throw new Error(`Child mission ${i} not found`);return o.createLink(t,n,i,r,"parent"),a.createLink(i,e,t,r,"child"),{content:[{type:"text",text:JSON.stringify({status:"linked",relationship:r},null,2)}]}}catch(c){throw new Error(`Failed to link: ${c.message}`)}}q();import cd from"path";q();Ze();import ed from"better-sqlite3";import Qt from"path";import Ga from"fs";import td from"os";import nd from"crypto";var qa=S.child({module:"fusion-connection"}),$i=5,id=1,Va=["files","exports","imports","configs","schema_migrations"],Ws=3,Ai=class{fusionDb;attachedRepos=new Map;fusionDbPath;name;constructor(e){this.name=e.name,this.fusionDbPath=this.getFusionDbPath(e.name),qa.info({name:e.name,path:this.fusionDbPath},"Initializing fused index connection");let t=Qt.dirname(this.fusionDbPath);Ga.existsSync(t)||Ga.mkdirSync(t,{recursive:!0}),this.fusionDb=new ed(this.fusionDbPath),this.fusionDb.pragma("journal_mode = WAL"),this.fusionDb.pragma("busy_timeout = 5000"),this.initFusionSchema();for(let n of e.repoPaths)this.attachRepo(n)}getFusionDbPath(e){let t=td.homedir(),n=Qt.join(t,".mcp-liquid-shadow","fused"),i=e.replace(/[^a-zA-Z0-9-_]/g,"_");return Qt.join(n,`${i}.db`)}initFusionSchema(){this.fusionDb.exec(`
+`)}]}}return{content:[{type:"text",text:`Unknown action: ${t}`}],isError:!0}}async function dc(s){let[e,t="."]=s;if(!e||!["install","uninstall","status"].includes(e)){console.log(""),console.log(`  ${b.bold("Usage: ")} liquid-shadow hooks <install|uninstall|status> [path]`),console.log(""),console.log(`  ${b.bold("Commands: ")}`),console.log(`    ${b.cyan("install")}    Install git hooks for automatic index refresh and symbol healing`),console.log(`    ${b.cyan("uninstall")}  Remove installed git hooks`),console.log(`    ${b.cyan("status")}     Check git hooks installation status`),console.log(""),console.log(`  ${b.bold("Examples: ")}`),console.log("    liquid-shadow hooks install ."),console.log("    liquid-shadow hooks status /path/to/repo"),console.log("");return}await Q(async()=>{let n=ll("path").resolve(t);switch(e){case"install":{let i=await Ui({repoPath:n,action:"install",enableAutoRefresh:!0,enableSymbolHealing:!0});if(console.log(""),console.log(`  ${b.green("\u2714")} ${b.bold("Git hooks installed successfully")}`),console.log(""),i.content&&i.content[0])try{let r=JSON.parse(i.content[0].text);console.log(`  ${b.bold("Installed hooks: ")}`),r.hooks.forEach(o=>{console.log(`    ${b.cyan("\u2022")} ${o}`)}),console.log("")}catch{console.log(i.content[0].text)}break}case"uninstall":{await Ui({repoPath:n,action:"remove"}),console.log(""),console.log(`  ${b.green("\u2714")} ${b.bold("Git hooks uninstalled successfully")}`),console.log("");break}case"status":{let i=await Ui({repoPath:n,action:"status"});if(console.log(""),console.log(`  ${b.bold("Git Hooks Status")}`),console.log(""),i.content&&i.content[0])try{let r=JSON.parse(i.content[0].text);r.installed&&r.installed.length>0?(console.log(`  ${b.green("\u2714")} Installed hooks:`),r.installed.forEach(o=>{console.log(`    ${b.cyan("\u2022")} ${o}`)})):console.log(`  ${b.yellow("\u26A0")} No hooks installed`),r.missing&&r.missing.length>0&&(console.log(""),console.log(`  ${b.dim("Missing hooks: ")}`),r.missing.forEach(o=>{console.log(`    ${b.dim("\u2022")} ${o}`)}))}catch{console.log(i.content[0].text)}console.log("");break}}})}Y();G();import bd from"path";import _d from"fs";var mc=w.child({module:"mcp:tools:workspace:list"});async function hc(s){let{repoPaths:e,status:t,limit:n,summarize:i=!1}=s;mc.info({repoCount:e.length,status:t,summarize:i},"Getting workspace missions");let r=[];for(let a of e)if(_d.existsSync(a))try{let{missions:c}=N.getInstance(a),l=c.findAll(t);for(let p of l){let u=c.getLinks(p.id);r.push({...p,repo_path:a,repo_name:bd.basename(a),cross_repo_links:u})}}catch(c){mc.error({error:c,repoPath:a},"Failed to query repo missions")}if(r.sort((a,c)=>{let l=d=>d==="in-progress"?0:d==="verifying"?1:2,p=l(a.status),u=l(c.status);return p!==u?p-u:(a.created_at||0)-(c.created_at||0)}),i||r.length>50&&!n){let a=n||20,c=r.slice(0,a),l=r.reduce((u,d)=>(u[d.status]=(u[d.status]||0)+1,u),{}),p=r.reduce((u,d)=>(u[d.repo_name]=(u[d.repo_name]||0)+1,u),{});return{content:[{type:"text",text:JSON.stringify({summary:{total_missions:r.length,by_status:l,by_repo:p,showing_top:a},top_missions:c,hint:`Showing top ${a} of ${r.length} missions. Use limit to adjust or summarize:false for full list.`},null,2)}]}}let o=n?r.slice(0,n):r;return{content:[{type:"text",text:JSON.stringify({total_missions:r.length,showing:o.length,missions:o},null,2)}]}}Y();G();var Ed=w.child({module:"mcp:tools:workspace:link"});async function fc(s){let{parentRepoPath:e,parentMissionId:t,childRepoPath:n,childMissionId:i,relationship:r="related"}=s;Ed.info({parentRepoPath:e,childRepoPath:n},"Linking cross-repo missions");let{missions:o}=N.getInstance(e),{missions:a}=N.getInstance(n);try{let c=o.findById(t),l=a.findById(i);if(!c)throw new Error(`Parent mission ${t} not found`);if(!l)throw new Error(`Child mission ${i} not found`);return o.createLink(t,n,i,r,"parent"),a.createLink(i,e,t,r,"child"),{content:[{type:"text",text:JSON.stringify({status:"linked",relationship:r},null,2)}]}}catch(c){throw new Error(`Failed to link: ${c.message}`)}}G();import Id from"path";G();ut();import Sd from"better-sqlite3";import un from"path";import gc from"fs";import wd from"os";import xd from"crypto";var yc=w.child({module:"fusion-connection"}),ji=5,vd=1,bc=["files","exports","imports","configs","schema_migrations"],tr=3,Gi=class{fusionDb;attachedRepos=new Map;fusionDbPath;name;constructor(e){this.name=e.name,this.fusionDbPath=this.getFusionDbPath(e.name),yc.info({name:e.name,path:this.fusionDbPath},"Initializing fused index connection");let t=un.dirname(this.fusionDbPath);gc.existsSync(t)||gc.mkdirSync(t,{recursive:!0}),this.fusionDb=new Sd(this.fusionDbPath),this.fusionDb.pragma("journal_mode = WAL"),this.fusionDb.pragma("busy_timeout = 5000"),this.initFusionSchema();for(let n of e.repoPaths)this.attachRepo(n)}getFusionDbPath(e){let t=wd.homedir(),n=un.join(t,".mcp-liquid-shadow","fused"),i=e.replace(/[^a-zA-Z0-9-_]/g,"_");return un.join(n,`${i}.db`)}initFusionSchema(){this.fusionDb.exec(`
       CREATE TABLE IF NOT EXISTS fused_repos (
         alias TEXT PRIMARY KEY,
         repo_path TEXT NOT NULL UNIQUE,
@@ -938,19 +993,19 @@ File: ${U.file}`,I=await E(T);if(I){let M=o.intentLogs.findSemanticMatches(I,3,c
 
       CREATE INDEX IF NOT EXISTS idx_virtual_edges_source ON virtual_edges(source_repo, source_file_path);
       CREATE INDEX IF NOT EXISTS idx_virtual_edges_target ON virtual_edges(target_repo, target_file_path);
-    `),this.fusionDb.prepare("INSERT OR REPLACE INTO fused_metadata (key, value, updated_at) VALUES ('schema_version', ?, unixepoch())").run(id.toString())}attachRepo(e){let t=Qt.resolve(e);if(this.attachedRepos.has(t))return;if(!Xe(t))throw new Error(`Repository "${t}" is not indexed. Run shadow_recon_onboard({ repoPath: "${t}" }) then shadow_sync_trace({ repoPath: "${t}" }).`);let n=Te(t),i=n.name;this.validateSchemaCompatibility(n,t);let r=this.getSchemaVersion(n),o=this.generateAlias(t);for(let a=1;a<=Ws;a++)try{this.fusionDb.exec(`ATTACH DATABASE '${i}' AS ${o}`);let c={alias:o,repoPath:t,dbPath:i,schemaVersion:r,attached:!0};this.attachedRepos.set(t,c),this.fusionDb.prepare(`INSERT OR REPLACE INTO fused_repos (alias, repo_path, db_path, schema_version, attached_at, last_validated_at)
-             VALUES (?, ?, ?, ?, unixepoch(), unixepoch())`).run(o,t,i,r);return}catch(c){if(this.isLockContentionError(c)&&a<Ws){qa.warn({repoPath:t,attempt:a,maxAttempts:Ws},"Attach failed due to lock contention; retrying");continue}throw c}}checkHealth(){let e=[];for(let t of this.attachedRepos.values())try{this.fusionDb.prepare(`SELECT 1 FROM ${t.alias}.files LIMIT 1`).get(),e.push({alias:t.alias,repoPath:t.repoPath,accessible:!0})}catch(n){e.push({alias:t.alias,repoPath:t.repoPath,accessible:!1,error:n instanceof Error?n.message:String(n)})}return{healthy:e.every(t=>t.accessible),repos:e}}detachRepo(e){let t=Qt.resolve(e),n=this.attachedRepos.get(t);n&&(this.fusionDb.exec(`DETACH DATABASE ${n.alias}`),this.attachedRepos.delete(t),this.fusionDb.prepare("DELETE FROM fused_repos WHERE repo_path = ?").run(t))}refreshRepo(e){this.detachRepo(e),this.attachRepo(e)}refreshAll(){let e=Array.from(this.attachedRepos.keys());for(let t of e)this.refreshRepo(t)}validateSchemas(){let e=Array.from(this.attachedRepos.values()).map(t=>{let n=Te(t.repoPath),i=Va.filter(o=>!this.checkTableExists(n,o)),r=this.getSchemaVersion(n);return{alias:t.alias,repoPath:t.repoPath,schemaVersion:r,compatible:r>=$i&&i.length===0,missingTables:i}});return{valid:e.every(t=>t.compatible),minVersion:$i,repos:e}}getAttachedRepos(){return Array.from(this.attachedRepos.values())}prepare(e){return this.fusionDb.prepare(e)}exec(e){this.fusionDb.exec(e)}close(){for(let e of this.attachedRepos.values())try{this.fusionDb.exec(`DETACH DATABASE ${e.alias}`)}catch{}this.attachedRepos.clear(),this.fusionDb.open&&this.fusionDb.close()}generateAlias(e){let t=Qt.basename(e).replace(/[^a-zA-Z0-9]/g,"_").toLowerCase(),n=nd.createHash("sha256").update(e).digest("hex").substring(0,6);return`repo_${t}_${n}`}getSchemaVersion(e){try{return e.prepare("SELECT MAX(version) as version FROM schema_migrations").get()?.version||0}catch{return 0}}validateSchemaCompatibility(e,t){let n=this.getSchemaVersion(e);if(n<$i)throw new Error(`Schema version mismatch for ${t}. Expected >= ${$i}, got ${n}.`);let i=Va.filter(r=>!this.checkTableExists(e,r));if(i.length>0)throw new Error(`Missing tables in ${t}: ${i.join(", ")}`)}checkTableExists(e,t){try{return!!e.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get(t)}catch{return!1}}isLockContentionError(e){let t=e instanceof Error?e.message.toLowerCase():String(e).toLowerCase();return t.includes("locked")||t.includes("busy")}get nameValue(){return this.name}get dbPath(){return this.fusionDbPath}};q();var yt=S.child({module:"edge-scanner"});function Hs(s){let e=s.split("?")[0].split("#")[0];return e.length>1&&e.endsWith("/")&&(e=e.slice(0,-1)),e}function sd(s){if(!s)return null;try{let e=JSON.parse(s);return e.path||e.name||null}catch{return null}}function rd(s,e){let t=Hs(s),n=Hs(e);if(t===n)return!0;let i=n.replace(/:[^/]+/g,"[^/]+").replace(/\{[^}]+\}/g,"[^/]+").replace(/\$[^/]+/g,"[^/]+");return new RegExp(`^${i}$`).test(t)}function od(s){yt.info("Starting HTTP gap detection scan");let e=s.getAttachedRepos();if(e.length<2)return yt.warn("Need at least 2 repos for cross-repo dependency detection"),0;let t=[];for(let r of e)try{let o=`
+    `),this.fusionDb.prepare("INSERT OR REPLACE INTO fused_metadata (key, value, updated_at) VALUES ('schema_version', ?, unixepoch())").run(vd.toString())}attachRepo(e){let t=un.resolve(e);if(this.attachedRepos.has(t))return;if(!pt(t))throw new Error(`Repository "${t}" is not indexed. Run shadow_recon_onboard({ repoPath: "${t}" }) then shadow_sync_trace({ repoPath: "${t}" }).`);let n=De(t),i=n.name;this.validateSchemaCompatibility(n,t);let r=this.getSchemaVersion(n),o=this.generateAlias(t);for(let a=1;a<=tr;a++)try{this.fusionDb.exec(`ATTACH DATABASE '${i}' AS ${o}`);let c={alias:o,repoPath:t,dbPath:i,schemaVersion:r,attached:!0};this.attachedRepos.set(t,c),this.fusionDb.prepare(`INSERT OR REPLACE INTO fused_repos (alias, repo_path, db_path, schema_version, attached_at, last_validated_at)
+             VALUES (?, ?, ?, ?, unixepoch(), unixepoch())`).run(o,t,i,r);return}catch(c){if(this.isLockContentionError(c)&&a<tr){yc.warn({repoPath:t,attempt:a,maxAttempts:tr},"Attach failed due to lock contention; retrying");continue}throw c}}checkHealth(){let e=[];for(let t of this.attachedRepos.values())try{this.fusionDb.prepare(`SELECT 1 FROM ${t.alias}.files LIMIT 1`).get(),e.push({alias:t.alias,repoPath:t.repoPath,accessible:!0})}catch(n){e.push({alias:t.alias,repoPath:t.repoPath,accessible:!1,error:n instanceof Error?n.message:String(n)})}return{healthy:e.every(t=>t.accessible),repos:e}}detachRepo(e){let t=un.resolve(e),n=this.attachedRepos.get(t);n&&(this.fusionDb.exec(`DETACH DATABASE ${n.alias}`),this.attachedRepos.delete(t),this.fusionDb.prepare("DELETE FROM fused_repos WHERE repo_path = ?").run(t))}refreshRepo(e){this.detachRepo(e),this.attachRepo(e)}refreshAll(){let e=Array.from(this.attachedRepos.keys());for(let t of e)this.refreshRepo(t)}validateSchemas(){let e=Array.from(this.attachedRepos.values()).map(t=>{let n=De(t.repoPath),i=bc.filter(o=>!this.checkTableExists(n,o)),r=this.getSchemaVersion(n);return{alias:t.alias,repoPath:t.repoPath,schemaVersion:r,compatible:r>=ji&&i.length===0,missingTables:i}});return{valid:e.every(t=>t.compatible),minVersion:ji,repos:e}}getAttachedRepos(){return Array.from(this.attachedRepos.values())}prepare(e){return this.fusionDb.prepare(e)}exec(e){this.fusionDb.exec(e)}close(){for(let e of this.attachedRepos.values())try{this.fusionDb.exec(`DETACH DATABASE ${e.alias}`)}catch{}this.attachedRepos.clear(),this.fusionDb.open&&this.fusionDb.close()}generateAlias(e){let t=un.basename(e).replace(/[^a-zA-Z0-9]/g,"_").toLowerCase(),n=xd.createHash("sha256").update(e).digest("hex").substring(0,6);return`repo_${t}_${n}`}getSchemaVersion(e){try{return e.prepare("SELECT MAX(version) as version FROM schema_migrations").get()?.version||0}catch{return 0}}validateSchemaCompatibility(e,t){let n=this.getSchemaVersion(e);if(n<ji)throw new Error(`Schema version mismatch for ${t}. Expected >= ${ji}, got ${n}.`);let i=bc.filter(r=>!this.checkTableExists(e,r));if(i.length>0)throw new Error(`Missing tables in ${t}: ${i.join(", ")}`)}checkTableExists(e,t){try{return!!e.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get(t)}catch{return!1}}isLockContentionError(e){let t=e instanceof Error?e.message.toLowerCase():String(e).toLowerCase();return t.includes("locked")||t.includes("busy")}get nameValue(){return this.name}get dbPath(){return this.fusionDbPath}};G();var Mt=w.child({module:"edge-scanner"});function nr(s){let e=s.split("?")[0].split("#")[0];return e.length>1&&e.endsWith("/")&&(e=e.slice(0,-1)),e}function Rd(s){if(!s)return null;try{let e=JSON.parse(s);return e.path||e.name||null}catch{return null}}function Td(s,e){let t=nr(s),n=nr(e);if(t===n)return!0;let i=n.replace(/:[^/]+/g,"[^/]+").replace(/\{[^}]+\}/g,"[^/]+").replace(/\$[^/]+/g,"[^/]+");return new RegExp(`^${i}$`).test(t)}function kd(s){Mt.info("Starting HTTP gap detection scan");let e=s.getAttachedRepos();if(e.length<2)return Mt.warn("Need at least 2 repos for cross-repo dependency detection"),0;let t=[];for(let r of e)try{let o=`
         SELECT id, name, file_path, capabilities
         FROM ${r.alias}.exports
         WHERE kind = 'HTTP Route'
-      `,a=s.executeRawQuery(o);for(let c of a){let l=sd(c.capabilities)||c.name;l&&l.startsWith("/")&&t.push({repo:r.alias,repoPath:r.repoPath,filePath:c.file_path,symbolId:c.id,routePath:l})}}catch(o){yt.warn({repo:r.alias,error:o},"Failed to query backend routes")}yt.debug({count:t.length},"Found backend routes");let n=[];for(let r of e)try{let o=`
+      `,a=s.executeRawQuery(o);for(let c of a){let l=Rd(c.capabilities)||c.name;l&&l.startsWith("/")&&t.push({repo:r.alias,repoPath:r.repoPath,filePath:c.file_path,symbolId:c.id,routePath:l})}}catch(o){Mt.warn({repo:r.alias,error:o},"Failed to query backend routes")}Mt.debug({count:t.length},"Found backend routes");let n=[];for(let r of e)try{let o=`
         SELECT file_path, name
         FROM ${r.alias}.event_synapses
         WHERE type = 'api_route' AND direction = 'produce'
-      `,a=s.executeRawQuery(o);for(let c of a){let l=Hs(c.name);l&&l.startsWith("/")&&n.push({repo:r.alias,repoPath:r.repoPath,filePath:c.file_path,routePath:l})}}catch(o){yt.warn({repo:r.alias,error:o},"Failed to query frontend API calls")}yt.debug({count:n.length},"Found frontend API calls");let i=0;for(let r of n)for(let o of t)if(r.repoPath!==o.repoPath&&rd(r.routePath,o.routePath))try{s.addVirtualEdge({sourceRepo:r.repoPath,sourceFilePath:r.filePath,targetRepo:o.repoPath,targetFilePath:o.filePath,targetSymbolId:o.symbolId,relationship:"api_call",metadata:{frontendPath:r.routePath,backendPath:o.routePath,method:o.method},confidence:1}),i++}catch(a){yt.debug({source:r.filePath,target:o.filePath,error:a},"Skipped duplicate edge")}return yt.info({edgesCreated:i,backendRoutes:t.length,frontendCalls:n.length},"HTTP gap detection scan completed"),i}function Ja(s){let e=od(s);return{httpGaps:e,totalEdges:e}}q();var ad=S.child({module:"fusion-index-service"}),Pi=class{constructor(e){this.connection=e}executeFederatedQuery(e,...t){return this.connection.prepare(e).all(...t).map(r=>{let{_repo_alias:o,_repo_path:a,...c}=r;return{repo:o,repoPath:a,data:c}})}executeRawQuery(e,...t){return this.connection.prepare(e).all(...t)}buildAdvancedQuery(e){let t=this.connection.getAttachedRepos();if(t.length===0)throw new Error("No repositories attached");let{table:n,tableAlias:i,columns:r,joins:o,where:a,groupBy:c,having:l,orderBy:p,limit:u,offset:d}=e,h=i||n.charAt(0),m=r.join(", "),_=t.map(g=>{let b=`${g.alias}.${n} ${h}`,w="";o&&o.length>0&&(w=o.map(D=>{let U=D.alias||D.table.charAt(0);return`${D.type} JOIN ${g.alias}.${D.table} ${U} ON ${D.on}`}).join(`
-  `));let x=a?`WHERE ${a}`:"",R=c&&c.length>0?`GROUP BY ${c.join(", ")}`:"",k=l?`HAVING ${l}`:"";return`SELECT '${g.alias}' as _repo_alias, '${g.repoPath}' as _repo_path, ${m} FROM ${b} ${w} ${x} ${R} ${k}`.trim()}).join(`
+      `,a=s.executeRawQuery(o);for(let c of a){let l=nr(c.name);l&&l.startsWith("/")&&n.push({repo:r.alias,repoPath:r.repoPath,filePath:c.file_path,routePath:l})}}catch(o){Mt.warn({repo:r.alias,error:o},"Failed to query frontend API calls")}Mt.debug({count:n.length},"Found frontend API calls");let i=0;for(let r of n)for(let o of t)if(r.repoPath!==o.repoPath&&Td(r.routePath,o.routePath))try{s.addVirtualEdge({sourceRepo:r.repoPath,sourceFilePath:r.filePath,targetRepo:o.repoPath,targetFilePath:o.filePath,targetSymbolId:o.symbolId,relationship:"api_call",metadata:{frontendPath:r.routePath,backendPath:o.routePath,method:o.method},confidence:1}),i++}catch(a){Mt.debug({source:r.filePath,target:o.filePath,error:a},"Skipped duplicate edge")}return Mt.info({edgesCreated:i,backendRoutes:t.length,frontendCalls:n.length},"HTTP gap detection scan completed"),i}function _c(s){let e=kd(s);return{httpGaps:e,totalEdges:e}}G();var Cd=w.child({module:"fusion-index-service"}),qi=class{constructor(e){this.connection=e}executeFederatedQuery(e,...t){return this.connection.prepare(e).all(...t).map(r=>{let{_repo_alias:o,_repo_path:a,...c}=r;return{repo:o,repoPath:a,data:c}})}executeRawQuery(e,...t){return this.connection.prepare(e).all(...t)}buildAdvancedQuery(e){let t=this.connection.getAttachedRepos();if(t.length===0)throw new Error("No repositories attached");let{table:n,tableAlias:i,columns:r,joins:o,where:a,groupBy:c,having:l,orderBy:p,limit:u,offset:d}=e,h=i||n.charAt(0),m=r.join(", "),S=t.map(y=>{let _=`${y.alias}.${n} ${h}`,E="";o&&o.length>0&&(E=o.map(F=>{let B=F.alias||F.table.charAt(0);return`${F.type} JOIN ${y.alias}.${F.table} ${B} ON ${F.on}`}).join(`
+  `));let R=a?`WHERE ${a}`:"",T=c&&c.length>0?`GROUP BY ${c.join(", ")}`:"",k=l?`HAVING ${l}`:"";return`SELECT '${y.alias}' as _repo_alias, '${y.repoPath}' as _repo_path, ${m} FROM ${_} ${E} ${R} ${T} ${k}`.trim()}).join(`
  UNION ALL 
-`);return p&&(_=`SELECT * FROM (${_}) AS federated_results ORDER BY ${p}`),u!==void 0&&(_+=` LIMIT ${u}`),d!==void 0&&(_+=` OFFSET ${d}`),_}buildFtsQuery(e,t,n,i,r=50){let o=this.connection.getAttachedRepos();if(o.length===0)throw new Error("No repositories attached");let a=n.replace(/"/g,'""'),c=i.map(p=>`c.${p}`).join(", ");return`${o.map(p=>`
+`);return p&&(S=`SELECT * FROM (${S}) AS federated_results ORDER BY ${p}`),u!==void 0&&(S+=` LIMIT ${u}`),d!==void 0&&(S+=` OFFSET ${d}`),S}buildFtsQuery(e,t,n,i,r=50){let o=this.connection.getAttachedRepos();if(o.length===0)throw new Error("No repositories attached");let a=n.replace(/"/g,'""'),c=i.map(p=>`c.${p}`).join(", ");return`${o.map(p=>`
 SELECT '${p.alias}' as _repo_alias, '${p.repoPath}' as _repo_path, ${c}, bm25(${p.alias}.${e}) as _fts_rank
 FROM ${p.alias}.${e} fts
 JOIN ${p.alias}.${t} c ON fts.rowid = c.id
@@ -972,7 +1027,7 @@ WHERE i.resolved_path IS NOT NULL`);return t.join(`
       INSERT INTO virtual_edges
       (source_repo, source_file_path, source_symbol_id, target_repo, target_file_path, target_symbol_id, relationship, metadata, confidence, updated_at)
       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, unixepoch())
-    `).run(e.sourceRepo,e.sourceFilePath,e.sourceSymbolId||null,e.targetRepo,e.targetFilePath,e.targetSymbolId||null,e.relationship,e.metadata?JSON.stringify(e.metadata):null,e.confidence??1).lastInsertRowid}scanEdges(){return ad.info({name:this.connection.nameValue},"Starting edge scan"),Ja(this)}getAttachedRepos(){return this.connection.getAttachedRepos()}get name(){return this.connection.nameValue}};var Ya=S.child({module:"fused-index"}),Us=class{connection;service;configName;constructor(e){this.configName=e.name,this.connection=new Ai(e),this.service=new Pi(this.connection)}attachRepo(e){this.connection.attachRepo(e)}detachRepo(e){this.connection.detachRepo(e)}refreshRepo(e){this.connection.refreshRepo(e)}getAttachedRepos(){return this.connection.getAttachedRepos()}checkHealth(){return this.connection.checkHealth()}close(){this.connection.close(),Ya.info({name:this.configName},"Fused index closed")}getStatus(){let e=this.service.executeRawQuery("SELECT COUNT(*) as count FROM virtual_edges");return{name:this.connection.nameValue,path:this.connection.dbPath,attachedRepos:this.connection.getAttachedRepos().length,repos:this.connection.getAttachedRepos(),virtualEdgesCount:e[0]?.count||0}}searchExports(e,t=50){return this.service.searchExports(e,t)}searchFiles(e,t=50){return this.service.searchFiles(e,t)}getVirtualEdges(e,t){return this.service.getVirtualEdges(e,t)}addVirtualEdge(e){return this.service.addVirtualEdge(e)}scanEdges(){return this.service.scanEdges()}buildUnionQuery(e,t,n){return this.service.buildUnionQuery(e,t,n)}executeFederatedQuery(e,...t){return this.service.executeFederatedQuery(e,...t)}executeRawQuery(e,...t){return this.service.executeRawQuery(e,...t)}buildAdvancedQuery(e){return this.service.buildAdvancedQuery(e)}buildFtsQuery(e,t,n,i,r){return this.service.buildFtsQuery(e,t,n,i,r)}buildCrossRepoImportsQuery(){return this.service.buildCrossRepoImportsQuery()}refreshAll(){this.connection.refreshAll()}validateSchemas(){return Ya.debug({name:this.configName},"Delegating validateSchemas"),this.connection.validateSchemas()}},zs=new Map;function Ka(s){let e=zs.get(s.name);if(e){let n=new Set(e.getAttachedRepos().map(o=>o.repoPath)),i=new Set(s.repoPaths.map(o=>cd.resolve(o)));if(n.size===i.size&&[...n].every(o=>i.has(o)))return e;e.close(),zs.delete(s.name)}let t=new Us(s);return zs.set(s.name,t),t}q();var ld=S.child({module:"mcp:tools:workspace:fuse"});async function Qa(s){let{repoPaths:e,name:t}=s;ld.info({repoCount:e.length,name:t},"Creating fused workspace index");try{let n=Ka({repoPaths:e,name:t||`workspace-${Date.now()}`});return{content:[{type:"text",text:JSON.stringify({message:"Fused index created",status:n.getStatus()},null,2)}]}}catch(n){throw new Error(`Failed to fuse: ${n.message}`)}}import Mi from"path";async function Xa(s){let[e,...t]=s;if(!e||!["missions","link","fuse"].includes(e)){console.log(""),console.log(`  ${y.bold("Usage: ")} liquid-shadow workspace <missions|link> [options]`),console.log(""),console.log(`  ${y.bold("Commands: ")}`),console.log(`    ${y.cyan("missions")} <paths...>  Get unified view of missions across repositories`),console.log(`    ${y.cyan("link")} <args...>       Link missions across repositories`),console.log(`    ${y.cyan("fuse")} <paths...>       Create fused index for cross-repo search (use --name for custom name)`),console.log(""),console.log(`  ${y.bold("Examples: ")}`),console.log("    liquid-shadow workspace missions /frontend /backend"),console.log("    liquid-shadow workspace link /frontend 5 /backend 12"),console.log("    liquid-shadow workspace fuse /frontend /backend --name my-app"),console.log("");return}await Y(async()=>{switch(e){case"missions":{if(t.length===0){console.error(`  ${y.red("\u2716")} Please provide at least one repository path`);return}let n=t.map(r=>Mi.resolve(r)),i=await ja({repoPaths:n});if(console.log(""),console.log(`  ${y.bold("Workspace Missions")}`),console.log(""),i.content&&i.content[0]){let r=JSON.parse(i.content[0].text);r.missions&&r.missions.length>0?r.missions.forEach(o=>{console.log(`  ${y.cyan("\u2022")} ${y.bold(o.name)} (ID: ${o.id})`),console.log(`    ${y.dim("Repo: ")} ${o.repo_path}`),console.log(`    ${y.dim("Status: ")} ${o.status}`),console.log(`    ${y.dim("Branch: ")} ${o.git_branch||"N/A"}`),o.cross_repo_links&&o.cross_repo_links.length>0&&console.log(`    ${y.dim("Links: ")} ${o.cross_repo_links.length} cross-repo link(s)`),console.log("")}):(console.log(`  ${y.yellow("\u26A0")} No missions found`),console.log(""))}break}case"link":{if(t.length<4){console.error(""),console.error(`  ${y.red("\u2716")} Usage: workspace link <parent-repo> <parent-id> <child-repo> <child-id> [relationship]`),console.error("");return}let[n,i,r,o,a]=t;await Ba({parentRepoPath:Mi.resolve(n),parentMissionId:parseInt(i,10),childRepoPath:Mi.resolve(r),childMissionId:parseInt(o,10),relationship:a}),console.log(""),console.log(`  ${y.green("\u2714")} ${y.bold("Missions linked successfully")}`),console.log(`    ${y.dim("Parent: ")} ${n} (Mission ${i})`),console.log(`    ${y.dim("Child: ")} ${r} (Mission ${o})`),a&&console.log(`    ${y.dim("Relationship: ")} ${a}`),console.log("");break}case"fuse":{if(t.length===0){console.error(`  ${y.red("\u2716")} Please provide at least one repository path`);return}let n,i=[];for(let o=0;o<t.length;o++)t[o]==="--name"&&o+1<t.length?(n=t[o+1],o++):i.push(Mi.resolve(t[o]));let r=await Qa({repoPaths:i,name:n});if(console.log(""),console.log(`  ${y.green("\u2714")} ${y.bold("Fused Index Created")}`),r.content&&r.content[0]){let o=JSON.parse(r.content[0].text);console.log(`    ${y.dim("Name: ")} ${o.fused_index.name}`),console.log(`    ${y.dim("Path: ")} ${o.fused_index.path}`),console.log(`    ${y.dim("Repos: ")} ${o.fused_index.attachedRepos}`),console.log(""),console.log(`  ${y.bold("Instructions:")}`),console.log(`    ${o.instructions}`)}console.log("");break}}})}q();q();var pd=S.child({module:"strategy-normalizer"}),Ie=class{static normalize(e){if(!e)return{steps:[]};let t;if(typeof e=="string")try{t=JSON.parse(e)}catch(i){return pd.warn({strategyInput:e,err:i},"Failed to parse strategy JSON"),{steps:[]}}else t=e;return{steps:this.normalizeSteps(t)}}static normalizeSteps(e){return Array.isArray(e)?e.map((t,n)=>typeof t=="string"?{id:`step-${n}`,description:t,status:"pending"}:typeof t=="object"&&t!==null?{id:t.id||`step-${n}`,description:t.description||t.content||t.name||`Step ${n+1}`,status:t.status||"pending",dependencies:t.dependencies||t.deps,verification:t.verification,...t}:{id:`step-${n}`,description:String(t),status:"pending"}):e.steps&&Array.isArray(e.steps)?this.normalizeSteps(e.steps):typeof e=="object"?Object.entries(e).map(([t,n],i)=>typeof n=="string"?{id:t,description:n,status:"pending"}:typeof n=="object"&&n!==null?{id:t,description:n.description||n.content||n.name||t,status:n.status||"pending",dependencies:n.dependencies||n.deps,verification:n.verification,...n}:{id:t||`step-${i}`,description:String(n),status:"pending"}):[]}static stringify(e){return JSON.stringify(e,null,2)}static validate(e){let t=[];if(!e)return{valid:!0,errors:[]};try{let n=this.normalize(e),i=new Set;for(let r of n.steps)if(i.has(r.id)&&t.push(`Duplicate step ID: ${r.id}`),i.add(r.id),r.dependencies)for(let o of r.dependencies)i.has(o)||t.push(`Step "${r.id}" depends on non-existent step "${o}"`);return{valid:t.length===0,errors:t}}catch(n){return t.push(`Strategy validation failed: ${n instanceof Error?n.message:String(n)}`),{valid:!1,errors:t}}}};q();import js from"fs";import Za from"path";import ud from"os";var dd=[{id:"step-0",description:"Analyze impact: identify dependents and call sites",status:"pending"},{id:"step-1",description:"Implement refactor and update call sites",status:"pending"},{id:"step-2",description:"Run tests and verify behavior; update docs if needed",status:"pending"}],md=[{id:"step-0",description:"Capture requirements and acceptance criteria",status:"pending"},{id:"step-1",description:"Implement feature with tests",status:"pending"},{id:"step-2",description:"Integrate and verify end-to-end",status:"pending"}],hd=[{id:"step-0",description:"Reproduce the bug and document steps",status:"pending"},{id:"step-1",description:"Diagnose root cause and plan fix",status:"pending"},{id:"step-2",description:"Apply fix and add/update regression test",status:"pending"},{id:"step-3",description:"Verify fix and run full test suite",status:"pending"}],ec=[{id:"refactoring",name:"Refactoring",description:"Impact analysis \u2192 implementation \u2192 verification",defaultGoal:"Refactor {{target}} safely with full impact analysis and verification.",steps:dd},{id:"feature",name:"Feature",description:"Requirements \u2192 implementation \u2192 testing",defaultGoal:"Implement {{target}} with clear requirements and end-to-end verification.",steps:md},{id:"bug-fix",name:"Bug fix",description:"Reproduction \u2192 diagnosis \u2192 fix \u2192 regression test",defaultGoal:"Fix {{target}}: reproduce, diagnose, fix, and add regression test.",steps:hd}],Bs=new Map(ec.map(s=>[s.id,s])),Ni=!1;function fd(){if(Ni)return;let s=Za.join(ud.homedir(),".shadow","templates");if(!js.existsSync(s)){S.debug({templatesDir:s},"Custom templates directory does not exist"),Ni=!0;return}try{let e=js.readdirSync(s).filter(t=>t.endsWith(".json"));for(let t of e)try{let n=Za.join(s,t),i=js.readFileSync(n,"utf8"),r=JSON.parse(i);if(!r.id||!r.name||!r.defaultGoal||!r.steps){S.warn({file:t,template:r},"Invalid custom template structure - skipping");continue}if(!Array.isArray(r.steps)||r.steps.length===0){S.warn({file:t},"Template has no steps - skipping");continue}if(ec.some(o=>o.id===r.id)){S.warn({file:t,templateId:r.id},"Custom template ID conflicts with built-in - skipping");continue}Bs.set(r.id,r),S.info({file:t,templateId:r.id},"Loaded custom template")}catch(n){S.warn({file:t,error:n},"Failed to load custom template")}Ni=!0}catch(e){S.warn({error:e,templatesDir:s},"Failed to read custom templates directory"),Ni=!0}}function gd(s){return fd(),Bs.get(s)}function yd(s,e){let t=s;for(let[n,i]of Object.entries(e))t=t.replace(new RegExp(`\\{\\{${n}\\}\\}`,"g"),i);return t}function tc(s,e,t={}){let n=gd(s);if(!n)throw new Error(`Unknown template: ${s}. Use one of: ${Array.from(Bs.keys()).join(", ")}`);let i=t.target||"scope",r=e||(s==="refactoring"?`Refactor ${i}`:s==="feature"?`Feature: ${i}`:`Fix: ${i}`),o=yd(n.defaultGoal,{...t,target:i}),a=Ie.normalize({steps:n.steps}),c=Ie.stringify(a);return{name:r,goal:o,strategy:c}}V();gn();var En=S.child({module:"mcp:tools:ops:plan"}),bd=["name","goal","strategy","parentId","outcomeContract"],_d="Mission update requires at least one updatable field: name, goal, strategy, parentId, outcomeContract.",Ed="Mission requires name and goal (or templateId with optional templateVars).";async function nc(s){let{repoPath:e,name:t,goal:n,strategy:i,missionId:r,parentId:o,outcomeContract:a,templateId:c,templateVars:l}=s,{missions:p}=O.getInstance(e),u=me(e),d=De(e);En.info({repoPath:e,name:t,missionId:r,templateId:c},"Planning mission");try{let h=t,m=n,f=i;if(!r&&c){let b=tc(c,t,l||{});h=h??b.name,m=m??b.goal,f=f??b.strategy}let _,g;if(r){let b=p.findById(r);if(!b)throw new Error(`Mission ${r} not found.`);let w;if(i!==void 0)if(i){let R=Ie.normalize(i);w=Ie.stringify(R);let k=Ie.validate(w);k.valid||En.warn({errors:k.errors,strategy:i},"Strategy validation warnings detected")}else w=null;let x={commit_sha:d};if(t!==void 0&&(x.name=t),n!==void 0&&(x.goal=n),w!==void 0&&(x.strategy_graph=w),o!==void 0&&(x.parent_id=o),a!==void 0&&(x.outcome_contract=a),Object.keys(x).length===1)throw new Error(_d);p.update(r,{...x}),_=r,g=`Mission "${t??b.name}" updated.`}else{if(!h||!m)throw new Error(Ed);let b=null;if(f){let w=Ie.normalize(f);b=Ie.stringify(w);let x=Ie.validate(b);x.valid||En.warn({errors:x.errors,strategy:f},"Strategy validation warnings detected")}_=p.create({name:h,goal:m,strategy_graph:b,status:"planned",git_branch:u,commit_sha:d,parent_id:o||null,verification_context:null,outcome_contract:a||null}),g=`Mission "${h}" planned.`}try{await new Fe(e).syncMissionToGitNotes(Number(_))}catch(b){En.info({missionId:_,...ye(b)},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:_,status:"planned",message:g,strategy_saved:!!f,contract_saved:!!a,updateable_fields:bd,from_template:c??void 0,commit:d},null,2)}]}}catch(h){let m=At(h);throw En.error({repoPath:e,...ye(h)},"Failed to plan mission"),new Error(`Failed to plan mission: ${m}`)}}q();V();var Di=class s{constructor(e){this.intentLogs=e}static RECENCY_HALF_LIFE_HOURS=48;static WEIGHTS={recency:.4,activity:.3,statusBoost:.2,blockerBoost:.1};score(e){if(e.length===0)return[];let t=Math.floor(Date.now()/1e3),n=e.map(c=>c.id),i=this.intentLogs.countByMissions(n),r=this.intentLogs.findMissionsWithBlockers(n),o=Math.max(1,...Object.values(i));return e.map(c=>{let l=this.computeRecency(c.updated_at,t),p=(i[c.id]||0)/o,u=this.computeStatusBoost(c.status),d=r.has(c.id)?1:0,h=s.WEIGHTS,m=l*h.recency+p*h.activity+u*h.statusBoost+d*h.blockerBoost;return{mission:c,score:Math.round(m*1e3)/1e3,breakdown:{recency:Math.round(l*1e3)/1e3,activity:Math.round(p*1e3)/1e3,blockerBoost:d,statusBoost:u}}}).sort((c,l)=>l.score-c.score)}computeRecency(e,t){let n=Math.max(0,(t-e)/3600);return Math.pow(.5,n/s.RECENCY_HALF_LIFE_HOURS)}computeStatusBoost(e){switch(e){case"in-progress":return 1;case"verifying":return .8;case"planned":return .4;default:return 0}}};V();q();var Sd=S.child({module:"collision-service"}),Oi=class{repoPath;constructor(e){this.repoPath=e}async analyzePotentialCollisions(){let e=me(this.repoPath);if(!e)return[];let{missions:t,intentLogs:n}=O.getInstance(this.repoPath),i=t.findActive().filter(a=>a.git_branch&&a.git_branch!==e),r=[],o=new Set;for(let a of i){let c=a.git_branch;if(o.has(c))continue;o.add(c),Sd.info({branch:c,currentBranch:e},"Checking predictive collisions"),wo(this.repoPath,e,c)&&r.push({branch:c,type:"file",description:`Background merge-tree detected a file-level conflict between '${e}' and '${c}'.`});let p=t.findActive(e),u=new Set;for(let m of p)t.getWorkingSet(m.id).forEach(f=>u.add(f.file_path));let h=t.getWorkingSet(a.id).filter(m=>u.has(m.file_path));h.length>0&&r.push({branch:c,type:"intent",description:`Logical conflict: Mission '${a.name}' on '${c}' is modifying files you are currently working on.`,conflictingFiles:h.map(m=>m.file_path)})}return r}};var Fi=class{constructor(e){this.repoPath=e}async getBriefing(e={}){let{missionId:t,scope:n="mission",altitude:i,activeMissionsLimit:r,recentActivityLimit:o,compact:a}=e,c=a??(i==="orbit"||i==="atmosphere"),l=o??(i==="orbit"?0:i==="ground"?20:10),{missions:p,intentLogs:u}=O.getInstance(this.repoPath),d=De(this.repoPath),h=me(this.repoPath);return n==="project"?this.getProjectBriefing({altitude:i,activeMissionsLimit:r,recentActivityLimit:l,compact:c,currentBranch:h,currentCommit:d}):this.getMissionBriefing({missionId:t,altitude:i,recentActivityLimit:l,currentBranch:h,currentCommit:d})}async getProjectBriefing(e){let{repoPath:t}=this,{missions:n,intentLogs:i}=O.getInstance(t),{altitude:r,activeMissionsLimit:o,recentActivityLimit:a,compact:c,currentBranch:l,currentCommit:p}=e,u=n.findActive(l||void 0),d=u.length;o&&u.length>o&&(u=u.slice(0,o));let h=n.findParentOnlyIds(u),m=new Set(h),f=u.filter(N=>!m.has(N.id)),g=new Di(i).score(f),b=.15,w=3,x=c&&g.length>w?g.filter((N,$)=>$<w||N.score>=b):g,R=x.map(N=>N.mission),k=new Map(x.map(N=>[N.mission.id,N.score])),D=N=>({id:N.id,name:N.name,goal:N.goal,status:N.status,relevance:k.get(N.id)});if(r==="orbit")return{scope:"project",altitude:"orbit",counts:n.getStats(),next_work_candidates:R.map(D),meta:{current_branch:l,activeMissionsTotal:d,ember:this.getEmberLabel(t)}};let U={},P=[];for(let N of u)N.parent_id!=null?(U[N.parent_id]||(U[N.parent_id]=[]),U[N.parent_id].push(N)):P.push(N);let E=n.findRecentCompleted(5).map(D),T=a>0?i.findRecentDecisionActivity(a):void 0,I=h.map(N=>{let $=u.find(L=>L.id===N);return{parent:c?{...$,strategy_graph:void 0,verification_context:void 0}:$,children:U[N]??[]}}),M=P.filter(N=>!m.has(N.id));return{scope:"project",altitude:r||"atmosphere",counts:n.getStats(),analytics:n.getAnalytics(),hierarchy:I.length>0?I:void 0,standalone_active:M.length>0?M:void 0,active_missions:I.length===0?c?u.map(N=>({...N,strategy_graph:void 0})):u:void 0,next_work_candidates:R.map(D),recent_completed:E,recent_activity:T,meta:{current_branch:l,current_commit:p,activeMissionsTotal:d,active_limit_applied:!!o,relevance_filtered:x.length<g.length?{shown:x.length,total:g.length}:void 0,ember:this.getEmberLabel(t)}}}getEmberLabel(e){try{let{status:t,progress:n}=yi(e);if(t==="idle")return;if(t==="done")return"symbols: fully embedded";let[i,r]=n.split("/").map(Number),o=r>0?Math.round(i/r*100):0;return t==="running"?`symbols: warming ${n} (${o}%)`:`symbols: ${t} ${n}`}catch{return}}async getMissionBriefing(e){let{repoPath:t}=this,{missions:n,intentLogs:i}=O.getInstance(t),{missionId:r,altitude:o,recentActivityLimit:a,currentBranch:c,currentCommit:l}=e,p;if(r?p=n.findById(r):p=n.findActive(c||void 0)[0],!p)return null;let u=null;try{p.strategy_graph&&(u=JSON.parse(p.strategy_graph))}catch{}if(o==="orbit")return{altitude:"orbit",mission:{id:p.id,name:p.name,goal:p.goal,status:p.status,last_updated:new Date(p.updated_at*1e3).toISOString()},strategy_snapshot:u};let d="No external shadow changes detected.";try{new qt(t).analyzeGhostChanges(p.commit_sha||void 0),d="Shadow Trace completed: Checked for external modifications."}catch{}let h={repaired:0,failed:0};try{h=new qe(t).detectAndRepairShifts()}catch{}let m=n.getHandoffs(p.id).map(_=>{let g=null;try{g=JSON.parse(_.metadata??"")}catch{}return{artifactId:_.id,kind:_.identifier,confidence:g?.confidence??null,findingsCount:g?.findings?.length??0,risksCount:g?.risks?.length??0,missionsCreated:g?.missionsCreated??[],createdAt:_.created_at}}),f={altitude:o||"atmosphere",mission:{id:p.id,name:p.name,goal:p.goal,status:p.status,last_updated:new Date(p.updated_at*1e3).toISOString(),git_branch:p.git_branch,commit_sha:p.commit_sha,outcome_contract:p.outcome_contract},artifacts:n.getArtifacts(p.id),handoffs:m,shadow_trace:{ghost_analysis:d,symbols_repaired:h.repaired,symbols_missing:h.failed},context:{current_commit:l,working_set:n.getWorkingSet(p.id).map(_=>_.file_path)},strategy_snapshot:u,recent_activity:o==="ground"?i.findByMission(p.id,a||20):i.findByMissionPreferCrystal(p.id,15),ancestor_activity_summary:[],predictive_collisions:[]};try{let _=new Oi(t);f.predictive_collisions=await _.analyzePotentialCollisions()}catch{}if(p.parent_id){let _=o==="ground"?i.findByMission(p.parent_id,5):i.findByMissionPreferCrystal(p.parent_id,3);f.ancestor_activity_summary=_.map(g=>({type:g.type,content:g.content,date:new Date(g.created_at*1e3).toISOString()}))}return f}};var ic=S.child({module:"mcp:tools:ops:briefing"});async function sc(s){let{repoPath:e,scope:t="mission"}=s;ic.info({repoPath:e,missionId:s.missionId,scope:t},"Generating briefing");try{let i=await new Fi(e).getBriefing(s);if(!i&&t==="mission")return{content:[{type:"text",text:"No active missions found. Ready for new assignment."}]};let r;if(t==="project"){let o=i.counts;r=i.next_work_candidates.length===0&&o.active===0?{tool:"shadow_ops_plan",reason:"No open work; create a mission"}:{tool:"shadow_ops_track",reason:"Select a mission from hierarchy or next_work_candidates to execute"}}return{content:[{type:"text",text:JSON.stringify(i,null,2)}],suggestedNext:r}}catch(n){throw ic.error({error:n,repoPath:e},"Failed to generate briefing"),new Error(`Failed to generate briefing: ${n instanceof Error?n.message:String(n)}`)}}q();V();V();q();q();var wd=S.child({module:"reasoning-engine"}),Wi=class{analyze(e){wd.debug({logCount:e.length},"Performing reasoning pass over intent logs");let t={context:[],decisions:[],consequences:[],recommendations:[],unclassified:[],sourceMissions:[]};for(let i of e){let r=i.content.toLowerCase(),o=this.matchesContext(r,i.type),a=this.matchesDecision(r,i.type),c=this.matchesConsequence(r,i.type),l=this.matchesRecommendation(r,i.type);o?t.context.push(i.content):a?t.decisions.push(i.content):l?t.recommendations.push(i.content):c?t.consequences.push(i.content):i.type==="decision"?t.decisions.push(i.content):i.type==="discovery"||i.type==="fix"?t.consequences.push(i.content):t.unclassified.push(i.content)}let n=new Set;for(let i of e)i.mission_id!=null&&n.add(i.mission_id);return t.sourceMissions=[...n],t}matchesContext(e,t){return["because","since","given","due to","context: ","problem: ","situation:"].some(i=>e.includes(i))||t==="blocker"}matchesDecision(e,t){return["decided","chose","implemented","integrated","using","selected","strategy:"].some(i=>e.includes(i))||t==="decision"}matchesConsequence(e,t){return["results in","enables","allows","impact: ","consequence: ","next steps: ","meaning"].some(i=>e.includes(i))||t==="fix"}matchesRecommendation(e,t){return["should","recommend","suggest","next work","future","consider","strategy advice"].some(i=>e.includes(i))}};var Hi=S.child({module:"briefing-engine"}),tt=class{intentLogs;missions;reasoningEngine;persistencePivot;constructor(e){let{intentLogs:t,missions:n}=O.getInstance(e);this.intentLogs=t,this.missions=n,this.reasoningEngine=new Wi,this.persistencePivot=new Fe(e)}async distillMission(e,t=!0){Hi.info({missionId:e},"Synthesizing mission intelligence into Tactical Briefing...");let n=this.gatherConsolidatedLogs(e);if(n.length===0)return{missionId:e,adr:"No intent logs found for this mission.",metrics:{totalLogs:0,symbolCount:0}};let i=this.reasoningEngine.analyze(n),r=new Set(n.map(a=>a.symbol_name).filter(Boolean)),o=`# Architectural Decision Record: Mission #${e}
+    `).run(e.sourceRepo,e.sourceFilePath,e.sourceSymbolId||null,e.targetRepo,e.targetFilePath,e.targetSymbolId||null,e.relationship,e.metadata?JSON.stringify(e.metadata):null,e.confidence??1).lastInsertRowid}scanEdges(){return Cd.info({name:this.connection.nameValue},"Starting edge scan"),_c(this)}getAttachedRepos(){return this.connection.getAttachedRepos()}get name(){return this.connection.nameValue}};var Ec=w.child({module:"fused-index"}),sr=class{connection;service;configName;constructor(e){this.configName=e.name,this.connection=new Gi(e),this.service=new qi(this.connection)}attachRepo(e){this.connection.attachRepo(e)}detachRepo(e){this.connection.detachRepo(e)}refreshRepo(e){this.connection.refreshRepo(e)}getAttachedRepos(){return this.connection.getAttachedRepos()}checkHealth(){return this.connection.checkHealth()}close(){this.connection.close(),Ec.info({name:this.configName},"Fused index closed")}getStatus(){let e=this.service.executeRawQuery("SELECT COUNT(*) as count FROM virtual_edges");return{name:this.connection.nameValue,path:this.connection.dbPath,attachedRepos:this.connection.getAttachedRepos().length,repos:this.connection.getAttachedRepos(),virtualEdgesCount:e[0]?.count||0}}searchExports(e,t=50){return this.service.searchExports(e,t)}searchFiles(e,t=50){return this.service.searchFiles(e,t)}getVirtualEdges(e,t){return this.service.getVirtualEdges(e,t)}addVirtualEdge(e){return this.service.addVirtualEdge(e)}scanEdges(){return this.service.scanEdges()}buildUnionQuery(e,t,n){return this.service.buildUnionQuery(e,t,n)}executeFederatedQuery(e,...t){return this.service.executeFederatedQuery(e,...t)}executeRawQuery(e,...t){return this.service.executeRawQuery(e,...t)}buildAdvancedQuery(e){return this.service.buildAdvancedQuery(e)}buildFtsQuery(e,t,n,i,r){return this.service.buildFtsQuery(e,t,n,i,r)}buildCrossRepoImportsQuery(){return this.service.buildCrossRepoImportsQuery()}refreshAll(){this.connection.refreshAll()}validateSchemas(){return Ec.debug({name:this.configName},"Delegating validateSchemas"),this.connection.validateSchemas()}},ir=new Map;function Sc(s){let e=ir.get(s.name);if(e){let n=new Set(e.getAttachedRepos().map(o=>o.repoPath)),i=new Set(s.repoPaths.map(o=>Id.resolve(o)));if(n.size===i.size&&[...n].every(o=>i.has(o)))return e;e.close(),ir.delete(s.name)}let t=new sr(s);return ir.set(s.name,t),t}G();var Ld=w.child({module:"mcp:tools:workspace:fuse"});async function wc(s){let{repoPaths:e,name:t}=s;Ld.info({repoCount:e.length,name:t},"Creating fused workspace index");try{let n=Sc({repoPaths:e,name:t||`workspace-${Date.now()}`});return{content:[{type:"text",text:JSON.stringify({message:"Fused index created",status:n.getStatus()},null,2)}]}}catch(n){throw new Error(`Failed to fuse: ${n.message}`)}}import Vi from"path";async function xc(s){let[e,...t]=s;if(!e||!["missions","link","fuse"].includes(e)){console.log(""),console.log(`  ${b.bold("Usage: ")} liquid-shadow workspace <missions|link> [options]`),console.log(""),console.log(`  ${b.bold("Commands: ")}`),console.log(`    ${b.cyan("missions")} <paths...>  Get unified view of missions across repositories`),console.log(`    ${b.cyan("link")} <args...>       Link missions across repositories`),console.log(`    ${b.cyan("fuse")} <paths...>       Create fused index for cross-repo search (use --name for custom name)`),console.log(""),console.log(`  ${b.bold("Examples: ")}`),console.log("    liquid-shadow workspace missions /frontend /backend"),console.log("    liquid-shadow workspace link /frontend 5 /backend 12"),console.log("    liquid-shadow workspace fuse /frontend /backend --name my-app"),console.log("");return}await Q(async()=>{switch(e){case"missions":{if(t.length===0){console.error(`  ${b.red("\u2716")} Please provide at least one repository path`);return}let n=t.map(r=>Vi.resolve(r)),i=await hc({repoPaths:n});if(console.log(""),console.log(`  ${b.bold("Workspace Missions")}`),console.log(""),i.content&&i.content[0]){let r=JSON.parse(i.content[0].text);r.missions&&r.missions.length>0?r.missions.forEach(o=>{console.log(`  ${b.cyan("\u2022")} ${b.bold(o.name)} (ID: ${o.id})`),console.log(`    ${b.dim("Repo: ")} ${o.repo_path}`),console.log(`    ${b.dim("Status: ")} ${o.status}`),console.log(`    ${b.dim("Branch: ")} ${o.git_branch||"N/A"}`),o.cross_repo_links&&o.cross_repo_links.length>0&&console.log(`    ${b.dim("Links: ")} ${o.cross_repo_links.length} cross-repo link(s)`),console.log("")}):(console.log(`  ${b.yellow("\u26A0")} No missions found`),console.log(""))}break}case"link":{if(t.length<4){console.error(""),console.error(`  ${b.red("\u2716")} Usage: workspace link <parent-repo> <parent-id> <child-repo> <child-id> [relationship]`),console.error("");return}let[n,i,r,o,a]=t;await fc({parentRepoPath:Vi.resolve(n),parentMissionId:parseInt(i,10),childRepoPath:Vi.resolve(r),childMissionId:parseInt(o,10),relationship:a}),console.log(""),console.log(`  ${b.green("\u2714")} ${b.bold("Missions linked successfully")}`),console.log(`    ${b.dim("Parent: ")} ${n} (Mission ${i})`),console.log(`    ${b.dim("Child: ")} ${r} (Mission ${o})`),a&&console.log(`    ${b.dim("Relationship: ")} ${a}`),console.log("");break}case"fuse":{if(t.length===0){console.error(`  ${b.red("\u2716")} Please provide at least one repository path`);return}let n,i=[];for(let o=0;o<t.length;o++)t[o]==="--name"&&o+1<t.length?(n=t[o+1],o++):i.push(Vi.resolve(t[o]));let r=await wc({repoPaths:i,name:n});if(console.log(""),console.log(`  ${b.green("\u2714")} ${b.bold("Fused Index Created")}`),r.content&&r.content[0]){let o=JSON.parse(r.content[0].text);console.log(`    ${b.dim("Name: ")} ${o.fused_index.name}`),console.log(`    ${b.dim("Path: ")} ${o.fused_index.path}`),console.log(`    ${b.dim("Repos: ")} ${o.fused_index.attachedRepos}`),console.log(""),console.log(`  ${b.bold("Instructions:")}`),console.log(`    ${o.instructions}`)}console.log("");break}}})}G();G();var Ji=w.child({module:"strategy-normalizer"}),ze=class{static normalize(e){if(!e)return{steps:[]};let t;if(typeof e=="string")try{t=JSON.parse(e)}catch(i){return Ji.warn({strategyInput:e,err:i},"Failed to parse strategy JSON"),{steps:[]}}else t=e;return{steps:this.normalizeSteps(t)}}static normalizeSteps(e){return Array.isArray(e)?e.map((t,n)=>{if(typeof t=="string")return{id:`step-${n}`,description:t,status:"pending"};if(typeof t=="object"&&t!==null){let{verification:i,...r}=t,o=this.sanitizeVerification(i);return{...r,id:t.id||`step-${n}`,description:t.description||t.content||t.name||`Step ${n+1}`,status:t.status||"pending",dependencies:t.dependencies||t.deps,...o!==void 0?{verification:o}:{}}}return{id:`step-${n}`,description:String(t),status:"pending"}}):e.steps&&Array.isArray(e.steps)?this.normalizeSteps(e.steps):typeof e=="object"?Object.entries(e).map(([t,n],i)=>{if(typeof n=="string")return{id:t,description:n,status:"pending"};if(typeof n=="object"&&n!==null){let{verification:r,...o}=n,a=this.sanitizeVerification(r);return{...o,id:t,description:n.description||n.content||n.name||t,status:n.status||"pending",dependencies:n.dependencies||n.deps,...a!==void 0?{verification:a}:{}}}return{id:t||`step-${i}`,description:String(n),status:"pending"}}):[]}static looksLikeNaturalLanguage(e){return e.trim().split(/\s+/).length>=5}static VALID_VERIFICATION_TYPES=new Set(["usage","import","pattern"]);static sanitizeVerificationRule(e){if(!e)return null;if(typeof e=="string")return this.looksLikeNaturalLanguage(e)?(Ji.warn({verification:e},"Stripping natural-language verification rule (not a valid pattern)"),null):{type:"pattern",target:e};if(typeof e!="object"||Array.isArray(e))return null;let t=e;if(typeof t.target!="string"||!t.target)return Ji.warn({verification:e},"Stripping verification rule without target"),null;if(this.looksLikeNaturalLanguage(t.target))return Ji.warn({verification:e},"Stripping natural-language verification target (not a valid pattern)"),null;let i={type:typeof t.type=="string"&&this.VALID_VERIFICATION_TYPES.has(t.type)?t.type:"pattern",target:t.target};return typeof t.context=="string"&&(i.context=t.context),typeof t.filePath=="string"&&(i.filePath=t.filePath),i}static sanitizeVerification(e){if(e!=null){if(Array.isArray(e)){let t=e.map(n=>this.sanitizeVerificationRule(n)).filter(Boolean);return t.length>0?t.length===1?t[0]:t:void 0}return this.sanitizeVerificationRule(e)??void 0}}static stringify(e){return JSON.stringify(e,null,2)}static validate(e){let t=[];if(!e)return{valid:!0,errors:[]};try{let n=this.normalize(e),i=new Set;for(let r of n.steps)if(i.has(r.id)&&t.push(`Duplicate step ID: ${r.id}`),i.add(r.id),r.dependencies)for(let o of r.dependencies)i.has(o)||t.push(`Step "${r.id}" depends on non-existent step "${o}"`);return{valid:t.length===0,errors:t}}catch(n){return t.push(`Strategy validation failed: ${n instanceof Error?n.message:String(n)}`),{valid:!1,errors:t}}}};G();import rr from"fs";import vc from"path";import Md from"os";var Ad=[{id:"step-0",description:"Analyze impact: identify dependents and call sites",status:"pending"},{id:"step-1",description:"Implement refactor and update call sites",status:"pending"},{id:"step-2",description:"Run tests and verify behavior; update docs if needed",status:"pending"}],$d=[{id:"step-0",description:"Capture requirements and acceptance criteria",status:"pending"},{id:"step-1",description:"Implement feature with tests",status:"pending"},{id:"step-2",description:"Integrate and verify end-to-end",status:"pending"}],Pd=[{id:"step-0",description:"Reproduce the bug and document steps",status:"pending"},{id:"step-1",description:"Diagnose root cause and plan fix",status:"pending"},{id:"step-2",description:"Apply fix and add/update regression test",status:"pending"},{id:"step-3",description:"Verify fix and run full test suite",status:"pending"}],Rc=[{id:"refactoring",name:"Refactoring",description:"Impact analysis \u2192 implementation \u2192 verification",defaultGoal:"Refactor {{target}} safely with full impact analysis and verification.",steps:Ad},{id:"feature",name:"Feature",description:"Requirements \u2192 implementation \u2192 testing",defaultGoal:"Implement {{target}} with clear requirements and end-to-end verification.",steps:$d},{id:"bug-fix",name:"Bug fix",description:"Reproduction \u2192 diagnosis \u2192 fix \u2192 regression test",defaultGoal:"Fix {{target}}: reproduce, diagnose, fix, and add regression test.",steps:Pd}],or=new Map(Rc.map(s=>[s.id,s])),Yi=!1;function Nd(){if(Yi)return;let s=vc.join(Md.homedir(),".shadow","templates");if(!rr.existsSync(s)){w.debug({templatesDir:s},"Custom templates directory does not exist"),Yi=!0;return}try{let e=rr.readdirSync(s).filter(t=>t.endsWith(".json"));for(let t of e)try{let n=vc.join(s,t),i=rr.readFileSync(n,"utf8"),r=JSON.parse(i);if(!r.id||!r.name||!r.defaultGoal||!r.steps){w.warn({file:t,template:r},"Invalid custom template structure - skipping");continue}if(!Array.isArray(r.steps)||r.steps.length===0){w.warn({file:t},"Template has no steps - skipping");continue}if(Rc.some(o=>o.id===r.id)){w.warn({file:t,templateId:r.id},"Custom template ID conflicts with built-in - skipping");continue}or.set(r.id,r),w.info({file:t,templateId:r.id},"Loaded custom template")}catch(n){w.warn({file:t,error:n},"Failed to load custom template")}Yi=!0}catch(e){w.warn({error:e,templatesDir:s},"Failed to read custom templates directory"),Yi=!0}}function Dd(s){return Nd(),or.get(s)}function Od(s,e){let t=s;for(let[n,i]of Object.entries(e))t=t.replace(new RegExp(`\\{\\{${n}\\}\\}`,"g"),i);return t}function Tc(s,e,t={}){let n=Dd(s);if(!n)throw new Error(`Unknown template: ${s}. Use one of: ${Array.from(or.keys()).join(", ")}`);let i=t.target||"scope",r=e||(s==="refactoring"?`Refactor ${i}`:s==="feature"?`Feature: ${i}`:`Fix: ${i}`),o=Od(n.defaultGoal,{...t,target:i}),a=ze.normalize({steps:n.steps}),c=ze.stringify(a);return{name:r,goal:o,strategy:c}}Y();Cn();import kc from"node:path";var An=w.child({module:"mcp:tools:ops:plan"}),Fd=["name","goal","strategy","parentId","outcomeContract"],Wd="Mission update requires at least one updatable field: name, goal, strategy, parentId, outcomeContract.",zd="Mission requires name and goal (or templateId with optional templateVars).";async function Cc(s){let{repoPath:e,name:t,goal:n,strategy:i,workingSet:r,missionId:o,parentId:a,outcomeContract:c,templateId:l,templateVars:p}=s,{missions:u}=N.getInstance(e),d=be(e),h=Ke(e);An.info({repoPath:e,name:t,missionId:o,templateId:l},"Planning mission");try{let m=t,f=n,S=i;if(!o&&l){let E=Tc(l,t,p||{});m=m??E.name,f=f??E.goal,S=S??E.strategy}let y,_;if(o){let E=u.findById(o);if(!E)throw new Error(`Mission ${o} not found.`);let R;if(i!==void 0)if(i){let k=ze.normalize(i);R=ze.stringify(k);let F=ze.validate(R);F.valid||An.warn({errors:F.errors,strategy:i},"Strategy validation warnings detected")}else R=null;let T={commit_sha:h};if(t!==void 0&&(T.name=t),n!==void 0&&(T.goal=n),R!==void 0&&(T.strategy_graph=R),a!==void 0&&(T.parent_id=a),c!==void 0&&(T.outcome_contract=c),Object.keys(T).length===1)throw new Error(Wd);u.update(o,{...T}),y=o,_=`Mission "${t??E.name}" updated.`}else{if(!m||!f)throw new Error(zd);let E=null;if(S){let R=ze.normalize(S);E=ze.stringify(R);let T=ze.validate(E);T.valid||An.warn({errors:T.errors,strategy:S},"Strategy validation warnings detected")}if(y=u.create({name:m,goal:f,strategy_graph:E,status:"planned",git_branch:d,commit_sha:h,parent_id:a||null,verification_context:null,outcome_contract:c||null}),r&&r.length>0){u.clearWorkingSet(Number(y));for(let R of r){let T=kc.isAbsolute(R)?R:kc.join(e,R);u.addToWorkingSet(Number(y),T,"planned")}}_=`Mission "${m}" planned.`}try{await new Ze(e).syncMissionToGitNotes(Number(y))}catch(E){An.info({missionId:y,...Re(E)},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:y,status:"planned",message:_,strategy_saved:!!S,working_set_populated:r?.length||0,working_set_seeded:r?.length||0,contract_saved:!!c,updateable_fields:Fd,from_template:l??void 0,commit:h},null,2)}]}}catch(m){let f=qt(m);throw An.error({repoPath:e,...Re(m)},"Failed to plan mission"),new Error(`Failed to plan mission: ${f}`)}}G();Y();var Ki=class s{constructor(e){this.intentLogs=e}static RECENCY_HALF_LIFE_HOURS=48;static WEIGHTS={recency:.4,activity:.3,statusBoost:.2,blockerBoost:.1};score(e){if(e.length===0)return[];let t=Math.floor(Date.now()/1e3),n=e.map(c=>c.id),i=this.intentLogs.countByMissions(n),r=this.intentLogs.findMissionsWithBlockers(n),o=Math.max(1,...Object.values(i));return e.map(c=>{let l=this.computeRecency(c.updated_at,t),p=(i[c.id]||0)/o,u=this.computeStatusBoost(c.status),d=r.has(c.id)?1:0,h=s.WEIGHTS,m=l*h.recency+p*h.activity+u*h.statusBoost+d*h.blockerBoost;return{mission:c,score:Math.round(m*1e3)/1e3,breakdown:{recency:Math.round(l*1e3)/1e3,activity:Math.round(p*1e3)/1e3,blockerBoost:d,statusBoost:u}}}).sort((c,l)=>l.score-c.score)}computeRecency(e,t){let n=Math.max(0,(t-e)/3600);return Math.pow(.5,n/s.RECENCY_HALF_LIFE_HOURS)}computeStatusBoost(e){switch(e){case"in-progress":return 1;case"verifying":return .8;case"planned":return .4;default:return 0}}};Y();G();var Hd=w.child({module:"collision-service"}),Qi=class{repoPath;constructor(e){this.repoPath=e}async analyzePotentialCollisions(){let e=be(this.repoPath);if(!e)return[];let{missions:t}=N.getInstance(this.repoPath),n=t.findActive(e)??[],i=new Set(n.map(l=>l.id)),r=(t.findActive()??[]).filter(l=>!i.has(l.id)),o=[],a=new Set;for(let l of r){let p=l.git_branch||"unknown",u=[e,p].sort().join("::");Hd.info({branch:p,currentBranch:e,missionId:l.id},"Checking predictive collisions"),p!==e&&!a.has(u)&&(a.add(u),Vo(this.repoPath,e,p)&&o.push({branch:p,type:"file",description:`Background merge-tree detected a file-level conflict between '${e}' and '${p}'.`}))}let c=this.analyzeMissionOverlaps([...i]);for(let l of c)o.push({branch:e,mission_id:l.missionB.id,mission_name:l.missionB.name,type:"intent",description:`Logical conflict: Mission '${l.missionA.name}' overlaps with '${l.missionB.name}'.`,conflictingFiles:l.sharedFiles});return o}analyzeMissionOverlaps(e){let t=be(this.repoPath);if(!t)return[];let{missions:n}=N.getInstance(this.repoPath),i=n.findActive(t)??[],r=e&&e.length>0?i.filter(a=>e.includes(a.id)):i,o=[];for(let a=0;a<r.length;a+=1){let c=r[a],l=new Set(n.getWorkingSet(c.id).map(p=>p.file_path));for(let p=a+1;p<r.length;p+=1){let u=r[p],d=n.getWorkingSet(u.id).map(m=>m.file_path),h=Array.from(new Set(d.filter(m=>l.has(m)))).sort();h.length!==0&&o.push({missionA:{id:c.id,name:c.name},missionB:{id:u.id,name:u.name},sharedFiles:h})}}return o}};Y();var ar=new Set(["planned","in-progress","verifying","suspended"]),$n=class{constructor(e){this.repoPath=e}buildPlanForParent(e){let{missions:t,claims:n}=N.getInstance(this.repoPath);if(!t.findById(e))throw new Error(`Mission ${e} not found`);let o=t.findByParentId(e).filter(d=>ar.has(d.status)).map(d=>{let h=t.getWorkingSet(d.id).map(m=>m.file_path);return{id:d.id,name:d.name,status:d.status,files:h}}),a=this.computeOverlapMatrix(o),c=this.colorIntoWaves(o,a),l=new Set(o.map(d=>d.id)),p=Array.from(new Set(o.flatMap(d=>d.files))),u=n.getClaimsByFiles(p).filter(d=>!l.has(d.mission_id)).map(d=>({file_path:d.file_path,mission_id:d.mission_id,mission_name:d.mission_name,mission_status:d.mission_status,mission_branch:d.mission_branch}));return this.composePlan(o,a,u,e)}buildPlanForMissions(e,t={}){let{includeClaimCheck:n=!0}=t,{missions:i,claims:r}=N.getInstance(this.repoPath),a=i.findByIds(e).filter(p=>ar.has(p.status)).map(p=>({id:p.id,name:p.name,status:p.status,files:i.getWorkingSet(p.id).map(u=>u.file_path)})),c=this.computeOverlapMatrix(a),l=n?this.computeExternalClaims(a,r.getClaimsByFiles(Array.from(new Set(a.flatMap(p=>p.files))))):[];return this.composePlan(a,c,l)}toHandlerPayload(e){let t=new Map(e.child_missions.map(p=>[p.id,p])),n=e.waves.map(p=>({waveIndex:p.wave,missions:p.missions.map(u=>{let d=t.get(u);return{id:u,name:d?.name??`Mission ${u}`,workingSetSize:d?.file_count??0}})})),i=e.overlap_matrix.map(p=>({missionA:p.mission_a,missionB:p.mission_b,sharedFiles:p.shared_files})),r=e.external_claims.map(p=>({filePath:p.file_path,claimedByMissionId:p.mission_id,claimedByMissionName:p.mission_name,claimedByMissionStatus:p.mission_status,claimedByMissionBranch:p.mission_branch})),o=e.child_missions.length,a=n.length,c=n[0]?.missions.length??0,l=`${o} missions in ${a} waves, ${c} parallelizable in wave 1`;return{waves:n,overlapMatrix:i,externalClaims:r,summary:l}}groupMissionsForParallelism(e){let{missions:t}=N.getInstance(this.repoPath),i=t.findByIds(e).filter(o=>ar.has(o.status)).map(o=>({id:o.id,name:o.name,status:o.status,files:t.getWorkingSet(o.id).map(a=>a.file_path)})),r=this.computeOverlapMatrix(i);return this.colorIntoWaves(i,r)}composePlan(e,t,n,i){let r=this.colorIntoWaves(e,t);return{...i!==void 0?{parent_mission_id:i}:{},mission_ids:e.map(o=>o.id),child_missions:e.map(o=>({id:o.id,name:o.name,status:o.status,file_count:o.files.length})),waves:r,overlap_matrix:t,external_claims:n}}computeExternalClaims(e,t){let n=new Set(e.map(i=>i.id));return t.filter(i=>!n.has(i.mission_id)).map(i=>({file_path:i.file_path,mission_id:i.mission_id,mission_name:i.mission_name,mission_status:i.mission_status,mission_branch:i.mission_branch}))}computeOverlapMatrix(e){let t=[];for(let n=0;n<e.length;n+=1){let i=e[n],r=new Set(i.files);for(let o=n+1;o<e.length;o+=1){let a=e[o],c=a.files.filter(l=>r.has(l));c.length!==0&&t.push({mission_a:i.id,mission_b:a.id,shared_files:Array.from(new Set(c)).sort()})}}return t}colorIntoWaves(e,t){if(e.length===0)return[];let n=new Map;for(let a of e)n.set(a.id,new Set);for(let a of t)n.get(a.mission_a)?.add(a.mission_b),n.get(a.mission_b)?.add(a.mission_a);let i=[...e].sort((a,c)=>{let l=(n.get(c.id)?.size??0)-(n.get(a.id)?.size??0);return l!==0?l:a.id-c.id}),r=new Map;for(let a of i){let c=new Set;for(let p of n.get(a.id)??[]){let u=r.get(p);u!==void 0&&c.add(u)}let l=1;for(;c.has(l);)l+=1;r.set(a.id,l)}let o=new Map;for(let[a,c]of r.entries()){let l=o.get(c)??[];l.push(a),o.set(c,l)}return[...o.entries()].sort((a,c)=>a[0]-c[0]).map(([a,c])=>({wave:a,missions:c.sort((l,p)=>l-p)}))}};var Zi=class{constructor(e){this.repoPath=e}async getBriefing(e={}){let{missionId:t,scope:n="mission",altitude:i,activeMissionsLimit:r,recentActivityLimit:o,compact:a}=e,c=a??(i==="orbit"||i==="atmosphere"),l=o??(i==="orbit"?0:i==="ground"?20:10),{missions:p,intentLogs:u}=N.getInstance(this.repoPath),d=Ke(this.repoPath),h=be(this.repoPath);return n==="project"?this.getProjectBriefing({altitude:i,activeMissionsLimit:r,recentActivityLimit:l,compact:c,currentBranch:h,currentCommit:d}):this.getMissionBriefing({missionId:t,altitude:i,recentActivityLimit:l,currentBranch:h,currentCommit:d})}async getProjectBriefing(e){let{repoPath:t}=this,{missions:n,intentLogs:i,claims:r}=N.getInstance(t),{altitude:o,activeMissionsLimit:a,recentActivityLimit:c,compact:l,currentBranch:p,currentCommit:u}=e,d=n.findActive(p||void 0),h=d.length;a&&d.length>a&&(d=d.slice(0,a));let m=n.findParentOnlyIds(d),f=new Set(m),S=d.filter(g=>!f.has(g.id)),_=new Ki(i).score(S),E=.15,R=3,T=l&&_.length>R?_.filter((g,x)=>x<R||g.score>=E):_,k=T.map(g=>g.mission),F=new Map(T.map(g=>[g.mission.id,g.score])),B=new Set(d.map(g=>g.id)),M=r.listClaims().filter(g=>B.has(g.mission_id)).map(g=>({file_path:g.file_path,mission_id:g.mission_id,mission_name:g.mission_name,mission_status:g.mission_status,mission_branch:g.mission_branch,claimed_at:g.claimed_at,updated_at:g.updated_at})),v=new $n(t).groupMissionsForParallelism(d.map(g=>g.id)),I=v.length,$=new Map;for(let g of M)$.set(g.mission_id,($.get(g.mission_id)??0)+1);let P=g=>({id:g.id,name:g.name,goal:g.goal,status:g.status,relevance:F.get(g.id),claimedFileCount:$.get(g.id)??0}),U=g=>({...g,claimedFileCount:$.get(g.id)??0});if(o==="orbit")return{scope:"project",altitude:"orbit",counts:n.getStats(),next_work_candidates:k.map(P),parallel_wave_count:I,claims_count:M.length,meta:{current_branch:p,activeMissionsTotal:h,ember:this.getEmberLabel(t)}};let A={},H=[];for(let g of d)g.parent_id!=null?(A[g.parent_id]||(A[g.parent_id]=[]),A[g.parent_id].push(g)):H.push(g);let L=n.findRecentCompleted(5).map(P),D=c>0?i.findRecentDecisionActivity(c):void 0,J=m.map(g=>{let x=d.find(C=>C.id===g);return{parent:l?{...U(x),strategy_graph:void 0,verification_context:void 0}:U(x),children:(A[g]??[]).map(U)}}),z=H.filter(g=>!f.has(g.id)).map(U);return{scope:"project",altitude:o||"atmosphere",counts:n.getStats(),analytics:n.getAnalytics(),hierarchy:J.length>0?J:void 0,standalone_active:z.length>0?z:void 0,active_missions:J.length===0?l?d.map(g=>({...U(g),strategy_graph:void 0})):d.map(U):void 0,claims:M,parallel_groups:v,next_work_candidates:k.map(P),recent_completed:L,recent_activity:D,meta:{current_branch:p,current_commit:u,activeMissionsTotal:h,active_limit_applied:!!a,relevance_filtered:T.length<_.length?{shown:T.length,total:_.length}:void 0,ember:this.getEmberLabel(t)}}}getEmberLabel(e){try{let{status:t,progress:n}=Li(e);if(t==="idle")return;if(t==="done")return"symbols: fully embedded";let[i,r]=n.split("/").map(Number),o=r>0?Math.round(i/r*100):0;return t==="running"?`symbols: warming ${n} (${o}%)`:`symbols: ${t} ${n}`}catch{return}}async getMissionBriefing(e){let{repoPath:t}=this,{missions:n,intentLogs:i,claims:r}=N.getInstance(t),{missionId:o,altitude:a,recentActivityLimit:c,currentBranch:l,currentCommit:p}=e,u;if(o?u=n.findById(o):u=n.findActive(l||void 0)[0],!u)return null;let d=null;try{u.strategy_graph&&(d=JSON.parse(u.strategy_graph))}catch{}if(a==="orbit")return{altitude:"orbit",mission:{id:u.id,name:u.name,goal:u.goal,status:u.status,last_updated:new Date(u.updated_at*1e3).toISOString()},strategy_snapshot:d};let h="No external shadow changes detected.";try{new on(t).analyzeGhostChanges(u.commit_sha||void 0),h="Shadow Trace completed: Checked for external modifications."}catch{}let m={repaired:0,failed:0};try{m=new it(t).detectAndRepairShifts()}catch{}let f=n.getHandoffs(u.id).map(y=>{let _=null;try{_=JSON.parse(y.metadata??"")}catch{}return{artifactId:y.id,kind:y.identifier,confidence:_?.confidence??null,findingsCount:_?.findings?.length??0,risksCount:_?.risks?.length??0,missionsCreated:_?.missionsCreated??[],createdAt:y.created_at}}),S={altitude:a||"atmosphere",mission:{id:u.id,name:u.name,goal:u.goal,status:u.status,last_updated:new Date(u.updated_at*1e3).toISOString(),git_branch:u.git_branch,commit_sha:u.commit_sha,outcome_contract:u.outcome_contract},artifacts:n.getArtifacts(u.id),handoffs:f,shadow_trace:{ghost_analysis:h,symbols_repaired:m.repaired,symbols_missing:m.failed},context:{current_commit:p,working_set:n.getWorkingSet(u.id).map(y=>y.file_path)},claims:r.getClaimsForMission(u.id),parallel_groups:new $n(t).groupMissionsForParallelism(n.findActive(l||void 0).map(y=>y.id)),strategy_snapshot:d,recent_activity:a==="ground"?i.findByMission(u.id,c||20):i.findByMissionPreferCrystal(u.id,15),ancestor_activity_summary:[],predictive_collisions:[]};try{let y=new Qi(t);S.predictive_collisions=await y.analyzePotentialCollisions()}catch{}if(u.parent_id){let y=a==="ground"?i.findByMission(u.parent_id,5):i.findByMissionPreferCrystal(u.parent_id,3);S.ancestor_activity_summary=y.map(_=>({type:_.type,content:_.content,date:new Date(_.created_at*1e3).toISOString()}))}return S}};var Ic=w.child({module:"mcp:tools:ops:briefing"});async function Lc(s){let{repoPath:e,scope:t="mission"}=s;Ic.info({repoPath:e,missionId:s.missionId,scope:t},"Generating briefing");try{let i=await new Zi(e).getBriefing(s);if(!i&&t==="mission")return{content:[{type:"text",text:"No active missions found. Ready for new assignment."}]};let r;if(t==="project"){let o=i.counts;r=i.next_work_candidates.length===0&&o.active===0?{tool:"shadow_ops_plan",reason:"No open work; create a mission"}:{tool:"shadow_ops_track",reason:"Select a mission from hierarchy or next_work_candidates to execute"}}return{content:[{type:"text",text:JSON.stringify(i,null,2)}],suggestedNext:r}}catch(n){throw Ic.error({error:n,repoPath:e},"Failed to generate briefing"),new Error(`Failed to generate briefing: ${n instanceof Error?n.message:String(n)}`)}}G();Y();Y();G();G();var Bd=w.child({module:"reasoning-engine"}),Xi=class{analyze(e){Bd.debug({logCount:e.length},"Performing reasoning pass over intent logs");let t={context:[],decisions:[],consequences:[],recommendations:[],unclassified:[],sourceMissions:[]};for(let i of e){let r=i.content.toLowerCase(),o=this.matchesContext(r,i.type),a=this.matchesDecision(r,i.type),c=this.matchesConsequence(r,i.type),l=this.matchesRecommendation(r,i.type);o?t.context.push(i.content):a?t.decisions.push(i.content):l?t.recommendations.push(i.content):c?t.consequences.push(i.content):i.type==="decision"?t.decisions.push(i.content):i.type==="discovery"||i.type==="fix"?t.consequences.push(i.content):t.unclassified.push(i.content)}let n=new Set;for(let i of e)i.mission_id!=null&&n.add(i.mission_id);return t.sourceMissions=[...n],t}matchesContext(e,t){return["because","since","given","due to","context: ","problem: ","situation:"].some(i=>e.includes(i))||t==="blocker"}matchesDecision(e,t){return["decided","chose","implemented","integrated","using","selected","strategy:"].some(i=>e.includes(i))||t==="decision"}matchesConsequence(e,t){return["results in","enables","allows","impact: ","consequence: ","next steps: ","meaning"].some(i=>e.includes(i))||t==="fix"}matchesRecommendation(e,t){return["should","recommend","suggest","next work","future","consider","strategy advice"].some(i=>e.includes(i))}};var es=w.child({module:"briefing-engine"}),mt=class{intentLogs;missions;reasoningEngine;persistencePivot;constructor(e){let{intentLogs:t,missions:n}=N.getInstance(e);this.intentLogs=t,this.missions=n,this.reasoningEngine=new Xi,this.persistencePivot=new Ze(e)}async distillMission(e,t=!0){es.info({missionId:e},"Synthesizing mission intelligence into Tactical Briefing...");let n=this.gatherConsolidatedLogs(e);if(n.length===0)return{missionId:e,adr:"No intent logs found for this mission.",metrics:{totalLogs:0,symbolCount:0}};let i=this.reasoningEngine.analyze(n),r=new Set(n.map(a=>a.symbol_name).filter(Boolean)),o=`# Architectural Decision Record: Mission #${e}
 
 `;if(o+=`## Summary of Intent
 `,o+=`Collected ${n.length} intent events across ${r.size} symbols.
@@ -994,8 +1049,8 @@ WHERE i.resolved_path IS NOT NULL`);return t.join(`
 `}),o+=`
 `),o+=`
 --- 
-*Generated by Liquid Shadow Reasoning Engine v1*`,t){this.intentLogs.create({mission_id:e,type:"adr",content:o,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:null});try{await this.persistencePivot.syncMissionToGitNotes(e),Hi.info({missionId:e},"Tactical Briefing synthesized, archived, and synced to Git Notes.")}catch(a){Hi.error({missionId:e,error:a},"Failed to sync ADR to Git Notes")}}else Hi.info({missionId:e},"Tactical Briefing synthesized (dry-run).");return{missionId:e,adr:o,metrics:{totalLogs:n.length,symbolCount:r.size}}}gatherConsolidatedLogs(e,t=0){let n=this.intentLogs.findByMissionPreferCrystal(e,500);if(t>2)return n;let i=this.missions.findByParentId(e);for(let r of i)n.push(...this.gatherConsolidatedLogs(r.id,t+1));return n.filter(r=>r.type!=="adr"&&r.type!=="system")}};q();import{Visitor as xd}from"@swc/core/Visitor.js";import*as rc from"@swc/core";var vd=S.child({module:"verification-engine"}),Gs=class extends xd{foundUsage=!1;foundImport=!1;rule;currentFunctionName=null;constructor(e){super(),this.rule=e}visitImportDeclaration(e){return this.rule.type==="import"&&e.source.value===this.rule.target&&(this.foundImport=!0),super.visitImportDeclaration(e)}visitFunctionDeclaration(e){let t=this.currentFunctionName;this.currentFunctionName=e.identifier.value;let n=super.visitFunctionDeclaration(e);return this.currentFunctionName=t,n}visitCallExpression(e){return this.rule.type==="usage"&&e.callee.type==="Identifier"&&e.callee.value===this.rule.target&&(!this.rule.context||this.currentFunctionName===this.rule.context)&&(this.foundUsage=!0),super.visitCallExpression(e)}},zi=class{async verify(e,t){try{let n=await rc.parse(e,{syntax:"typescript",tsx:!0,comments:!1}),i=new Gs(t);i.visitProgram(n);let r=!1,o=[];if(t.type==="import")r=i.foundImport,r||o.push(`Required import "${t.target}" not found.`);else if(t.type==="usage"){if(r=i.foundUsage,!r){let a=t.context?` in function "${t.context}"`:"";o.push(`Required usage of "${t.target}"${a} not found.`)}}else t.type==="pattern"&&(r=new RegExp(t.target).test(e),r||o.push(`Required pattern "${t.target}" not found.`));return{passed:r,errors:o}}catch(n){return vd.error({error:n},"Verification failed due to parse error"),{passed:!1,errors:[`Parse error: ${n.message}`]}}}};gn();import oc from"path";import Ui from"fs";var Le=S.child({module:"mcp:tools:ops:track"});function qs(s,e){return oc.isAbsolute(e)?e:oc.join(s,e)}async function ac(s,e,t){let{missions:n,intentLogs:i}=O.getInstance(s),r=n.findById(e);if(!r?.parent_id)return;let o=n.findByParentId(r.parent_id);if(!o.every(l=>l.status==="completed"))return;let c=n.findById(r.parent_id);if(!(!c||c.status==="completed")){Le.info({parentId:c.id,childCount:o.length},"All children completed \u2014 cascading parent completion"),n.updateStatus(c.id,"completed",t||void 0),n.clearWorkingSet(c.id),i.create({mission_id:c.id,type:"system",content:`Parent auto-completed: all ${o.length} child missions finished`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:t});try{await new tt(s).distillMission(c.id),Le.info({parentId:c.id},"Parent Auto-Synthesis completed")}catch(l){Le.info({parentId:c.id,...ye(l)},"Parent Auto-Synthesis deferred")}try{await new Fe(s).syncMissionToGitNotes(c.id)}catch(l){Le.info({parentId:c.id,...ye(l)},"Parent Git Notes sync deferred")}await ac(s,c.id,t)}}async function cc(s){let{repoPath:e,missionId:t,stepId:n,status:i,contextPivot:r,updates:o,artifacts:a}=s,{missions:c,intentLogs:l}=O.getInstance(e),p=De(e);Le.info({repoPath:e,missionId:t,singleStep:n,batchCount:o?.length,artifactCount:a?.length},"Updating mission status");try{if(a&&Array.isArray(a))for(let h of a)c.addArtifact(t,h.type,h.identifier,h.metadata);let u=[];if(o&&Array.isArray(o)&&u.push(...o),n&&i&&u.push({stepId:n,status:i,contextPivot:r}),i&&!n){if(c.updateStatus(t,i,p||void 0),i==="completed"&&c.clearWorkingSet(t),l.create({mission_id:t,type:"system",content:`Mission status changed to "${i}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),i==="completed"){try{await new tt(e).distillMission(t),Le.info({missionId:t},"Auto-Synthesis completed successfully")}catch(h){Le.info({missionId:t,...ye(h)},"Auto-Synthesis deferred or failed")}await ac(e,t,p)}if(!u.length)return{content:[{type:"text",text:JSON.stringify({missionId:t,status:i,message:"Mission status updated successfully.",artifacts_added:a?.length||0,commit:p},null,2)}]}}if(u.length===0&&(!a||a.length===0))throw new Error("No updates provided. Must specify either 'updates', 'stepId'/'status', 'status' (top-level), or 'artifacts'.");let d=[];for(let h of u){let{stepId:m,status:f,contextPivot:_}=h,g=c.findById(t);if(!g)throw new Error(`Mission ID ${t} not found`);let b=JSON.parse(g.strategy_graph||"{}"),w=null;if(Array.isArray(b)?w=b.find(x=>x.id===m):b.nodes&&Array.isArray(b.nodes)?w=b.nodes.find(x=>x.id===m):b.steps?Array.isArray(b.steps)?w=b.steps.find(x=>x.id===m):w=b.steps[m]:b[m]&&(w=b[m]),!w)throw new Error(`Step ID "${m}" not found`);if(f==="completed"&&w.verification){let x=new zi,R=Array.isArray(w.verification)?w.verification:[w.verification];for(let k of R){let D=k;if(typeof k=="string"&&(D={type:"pattern",target:k}),!D||!D.target){Le.warn({rule:k},"Skipping invalid verification rule (missing target)");continue}let U=D.filePath;if(U&&(U=qs(e,U)),U){if(!Ui.existsSync(U))throw new Error(`Verification failed: File not found at ${U}`);let P=await x.verify(Ui.readFileSync(U,"utf8"),D);if(!P.passed)throw new Error(`Verification failed: ${P.errors.join("")}`)}else{let P=c.getWorkingSet(t),E=!1;P.length===0&&Le.warn("No working set files to verify against for rule");for(let T of P){let I=qs(e,T.file_path);if(!Ui.existsSync(I))continue;if((await x.verify(Ui.readFileSync(I,"utf8"),D)).passed){E=!0;break}}if(!E)throw new Error(`Verification failed: Rule "${D.target}" not satisfied in any working set file.`)}}}if(w.status=f,c.update(t,{strategy_graph:JSON.stringify(b),commit_sha:p}),l.create({mission_id:t,type:"system",content:`Step "${m}" updated to "${f}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),_){let x=_.trim();if(x.startsWith("{")||x.startsWith("["))try{let R=JSON.parse(x);if(R.files&&Array.isArray(R.files)){c.clearWorkingSet(t);for(let k of R.files)c.addToWorkingSet(t,qs(e,k))}}catch(R){Le.warn({error:R},"Failed to apply context pivot")}}d.push({stepId:m,status:f})}try{await new Fe(e).syncMissionToGitNotes(t)}catch(h){Le.info({missionId:t,...ye(h)},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:t,updates:d,artifacts_added:a?.length||0,message:"Status updated",commit:p},null,2)}]}}catch(u){let d=At(u);throw Le.error({repoPath:e,...ye(u)},"Failed to update status"),new Error(`Failed to update status: ${d}`)}}q();var dc=S.child({module:"mcp:tools:ops:graph"});async function mc(s){let{repoPath:e,missionId:t,depth:n,limit:i,format:r="mermaid"}=s;dc.info({repoPath:e,missionId:t,format:r},"Generating mission graph");try{let{GraphExporterService:o}=await Promise.resolve().then(()=>(uc(),pc));return{content:[{type:"text",text:await new o(e).generateGraph({includeCompleted:!0,format:r,focusMissionId:t,depth:n,limit:i})}]}}catch(o){throw dc.error({error:o,repoPath:e},"Failed to generate mission graph"),new Error(`Failed to generate mission graph: ${o.message}`)}}V();q();import hc from"node:path";var Xt=S.child({module:"mcp:tools:ops:log"}),Td=["in-progress","verifying"];function Rd(s){for(let e of Td){let t=s.find(n=>n.status===e);if(t)return t.id}return s[0]?.id??null}function kd(s,e){return e?hc.isAbsolute(e)?e:hc.join(s,e):null}async function fc(s){let{repoPath:e,missionId:t,type:n,content:i,filePath:r,symbolName:o,standalone:a}=s;Xt.info({repoPath:e,type:n,symbolName:o,standalone:a},"Logging intent");let{missions:c,exports:l,intentLogs:p}=O.getInstance(e),u=kd(e,r);try{let d=t??null,h=me(e)||void 0;if(a)d=null,Xt.debug("Standalone intent requested; mission auto-resolution skipped");else if(d){if(!c.findById(d))throw new Error(`Mission ${d} not found. Use shadow_ops_briefing to see available missions.`)}else{let w=c.findActive(h);w.length>0?(d=Rd(w),Xt.debug({missionId:d,currentBranch:h},"Auto-resolved to active mission on current branch")):(d=null,Xt.debug({currentBranch:h},"No active mission found on current branch; logging as system/unlinked intent"))}let m=null,f=null,_=o||null,g=u;if(o){let x=(u?l.findByNameAndFile(o,u):l.findByName(o))[0];x?(m=x.id,f=x.signature,_=x.name,g=x.file_path||g):Xt.warn({symbolName:o,filePath:u??r},"Symbol not found for intent linking")}let b=p.create({mission_id:d,symbol_id:m,file_path:g,type:n,content:i,confidence:1,symbol_name:_,signature:f,commit_sha:null});return d&&g&&c.addToWorkingSet(d,g,m?"symbol":"intent"),{content:[{type:"text",text:JSON.stringify({logId:b,missionId:d,symbolId:m,status:"logged",message:m?`Intent linked to symbol "${o}"`:"Intent logged (unlinked)"},null,2)}]}}catch(d){throw Xt.error({error:d,repoPath:e},"Failed to log intent"),new Error(`Failed to log intent: ${d instanceof Error?d.message:String(d)}`)}}V();q();var gc=S.child({module:"mcp:tools:ops:synthesize"});async function yc(s){let{repoPath:e,missionId:t}=s;gc.info({repoPath:e,missionId:t},"Synthesizing mission");let{missions:n}=O.getInstance(e);try{if(!n.findById(t))throw new Error(`Mission ${t} not found`);let o=await new tt(e).distillMission(t);return{content:[{type:"text",text:JSON.stringify({missionId:t,adr:o.adr,metrics:o.metrics},null,2)}]}}catch(i){throw gc.error({error:i,repoPath:e},"Failed to synthesize ADR"),new Error(`Failed to synthesize ADR: ${i instanceof Error?i.message:String(i)}`)}}import Cd from"path";var ne={...y,box:se,table:jn,list:Nr};async function bc(s){let[e,...t]=s;if(!e||!["plan","briefing","update","log","synthesize","graph"].includes(e)){console.log(""),console.log(`  ${ne.bold("Usage: ")} liquid-shadow mission <action> [options]`),console.log(""),console.log(`  ${ne.bold("Actions: ")}`),console.log(`    ${ne.cyan("plan")} <repo> <name> <goal>      Plan a new mission`),console.log(`    ${ne.cyan("update")} <repo> <id> <status>    Update mission status`),console.log(`    ${ne.cyan("log")} <repo> <id> <type> <msg>   Log a mission discovery/intent`),console.log(`    ${ne.cyan("briefing")} <repo> [--branch]     Get mission briefing`),console.log(`    ${ne.cyan("synthesize")} <repo> <id>        Distill mission into ADR`),console.log(`    ${ne.cyan("graph")} <repo> [id]             Generate mission lineage graph`),console.log("");return}await Y(async()=>{let n=t[0]?Cd.resolve(t[0]):process.cwd();switch(e){case"plan":{let[i,r,o]=t;if(!r||!o){console.error(`  ${ne.red("\u2716")} Usage: mission plan <repo> <name> <goal>`);return}let a=await nc({repoPath:n,name:r,goal:o}),c=JSON.parse(a.content[0].text);console.log(`  ${ne.green("\u2714")} Mission planned (ID: ${c.missionId})`);break}case"update":{let[i,r,o]=t;if(!r||!o){console.error(`  ${ne.red("\u2716")} Usage: mission update <repo> <id> <status>`);return}await cc({repoPath:n,missionId:parseInt(r),status:o}),console.log(`  ${ne.green("\u2714")} Status updated to ${o}`);break}case"log":{let[i,r,o,...a]=t;if(!r||!o||a.length===0){console.error(`  ${ne.red("\u2716")} Usage: mission log <repo> <id> <type> <message>`);return}await fc({repoPath:n,missionId:parseInt(r),type:o,content:a.join(" ")}),console.log(`  ${ne.green("\u2714")} Intent logged`);break}case"synthesize":{let[i,r]=t;if(!r){console.error(`  ${ne.red("\u2716")} Usage: mission synthesize <repo> <id>`);return}let o=await yc({repoPath:n,missionId:parseInt(r)});console.log(""),ne.box("Mission Synthesis (ADR)",o.content[0].text,"magenta");break}case"graph":{let[i,r]=t,o=await mc({repoPath:n,missionId:r?parseInt(r):void 0,format:"mermaid"});console.log(""),console.log(o.content[0].text);break}case"briefing":{let i=await sc({repoPath:n});if(i.content&&i.content[0]){let r=i.content[0].text;try{let o=JSON.parse(r);if(o.mission){console.log(""),console.log(ne.bold(ne.cyan(` Mission Dashboard: ${o.mission.name} `))),ne.box("Tactical Goal",o.mission.goal,"cyan");let a=o.mission.status==="completed"?"green":o.mission.status==="failed"?"red":"yellow",c=[["Status",ne.bold(ne[a](o.mission.status.toUpperCase()))],["ID",`#${o.mission.id}`],["Branch",o.mission.git_branch||"main"]];ne.table(["Field","Value"],c),o.recent_activity&&o.recent_activity.length>0&&(console.log(`  ${ne.bold("Recent Activity:")}`),ne.list(o.recent_activity.slice(0,5).map(l=>`${ne.dim(`[${l.type.toUpperCase()}]`)} ${l.content}`)))}else console.log(r)}catch{console.log(r)}}break}}})}import Js from"path";async function _c(s){let[e,...t]=s;if(!e||!["symbol","file"].includes(e)){console.log(""),console.log(`  ${y.bold("Usage: ")} liquid-shadow inspect <symbol|file> [options]`),console.log(""),console.log(`  ${y.bold("Actions: ")}`),console.log(`    ${y.cyan("symbol")} <repo> <name>    Read source code for a symbol`),console.log(`    ${y.cyan("file")} <repo> <path>     Get a token-efficient file summary`),console.log("");return}await Y(async()=>{let n=t[0]?Js.resolve(t[0]):process.cwd();if(e==="symbol"){let i=t[1];if(!i){console.error(`  ${y.red("\u2716")} Please provide a symbol name`);return}let r=await Kt({repoPath:n,symbolName:i});console.log(""),r.content&&r.content[0]&&console.log(r.content[0].text)}else{let i=t[1];if(!i){console.error(`  ${y.red("\u2716")} Please provide a file path`);return}let r=Js.isAbsolute(i)?i:Js.join(n,i),o=await Ci({repoPath:n,filePath:r});console.log(""),o.content&&o.content[0]&&console.log(o.content[0].text)}})}var Ec=["index","status","metrics","benchmark","tree","trace","watch","search-config","search-concept","search-symbol","search-fuzzy","hooks","workspace","mission","inspect","completion"],Id=["--help","-h","--version","-v","--dir","-d"],Ld={index:["--output","-o","--level","-l","--subPath","--force","--deep"],tree:["--subPath","--depth","-d"],trace:["--dir","-d"],"search-config":["--dir","-d","--kind"],"search-concept":["--dir","-d","--interactive","-i"],"search-symbol":["--dir","-d","--interactive","-i"],"search-fuzzy":["--dir","-d","--interactive","-i"]};function $d(){let s=Object.entries(Ld).map(([n,i])=>`    ${n}) opts="${i.join(" ")}" ;;`).join(`
-`),e=Ec.join(" ");return`# Bash completion for liquid-shadow. Usage: source <(liquid-shadow completion bash)
+*Generated by Liquid Shadow Reasoning Engine v1*`,t){this.intentLogs.create({mission_id:e,type:"adr",content:o,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:null});try{await this.persistencePivot.syncMissionToGitNotes(e),es.info({missionId:e},"Tactical Briefing synthesized, archived, and synced to Git Notes.")}catch(a){es.error({missionId:e,error:a},"Failed to sync ADR to Git Notes")}}else es.info({missionId:e},"Tactical Briefing synthesized (dry-run).");return{missionId:e,adr:o,metrics:{totalLogs:n.length,symbolCount:r.size}}}gatherConsolidatedLogs(e,t=0){let n=this.intentLogs.findByMissionPreferCrystal(e,500);if(t>2)return n;let i=this.missions.findByParentId(e);for(let r of i)n.push(...this.gatherConsolidatedLogs(r.id,t+1));return n.filter(r=>r.type!=="adr"&&r.type!=="system")}};G();import{Visitor as Ud}from"@swc/core/Visitor.js";import*as Mc from"@swc/core";var jd=w.child({module:"verification-engine"}),cr=class extends Ud{foundUsage=!1;foundImport=!1;rule;currentFunctionName=null;constructor(e){super(),this.rule=e}visitImportDeclaration(e){return this.rule.type==="import"&&e.source.value===this.rule.target&&(this.foundImport=!0),super.visitImportDeclaration(e)}visitFunctionDeclaration(e){let t=this.currentFunctionName;this.currentFunctionName=e.identifier.value;let n=super.visitFunctionDeclaration(e);return this.currentFunctionName=t,n}visitCallExpression(e){return this.rule.type==="usage"&&e.callee.type==="Identifier"&&e.callee.value===this.rule.target&&(!this.rule.context||this.currentFunctionName===this.rule.context)&&(this.foundUsage=!0),super.visitCallExpression(e)}},ts=class{async verify(e,t){try{let n=await Mc.parse(e,{syntax:"typescript",tsx:!0,comments:!1}),i=new cr(t);i.visitProgram(n);let r=!1,o=[];if(t.type==="import")r=i.foundImport,r||o.push(`Required import "${t.target}" not found.`);else if(t.type==="usage"){if(r=i.foundUsage,!r){let a=t.context?` in function "${t.context}"`:"";o.push(`Required usage of "${t.target}"${a} not found.`)}}else t.type==="pattern"&&(r=new RegExp(t.target).test(e),r||o.push(`Required pattern "${t.target}" not found.`));return{passed:r,errors:o}}catch(n){return jd.error({error:n},"Verification failed due to parse error"),{passed:!1,errors:[`Parse error: ${n.message}`]}}}};Cn();import Ac from"path";import ns from"fs";var Te=w.child({module:"mcp:tools:ops:track"});function lr(s,e){return Ac.isAbsolute(e)?e:Ac.join(s,e)}async function $c(s,e,t){let{missions:n,intentLogs:i}=N.getInstance(s),r=n.findById(e);if(!r?.parent_id)return;let o=n.findByParentId(r.parent_id);if(!o.every(p=>p.status==="completed"))return;let c=n.findById(r.parent_id);if(!c||c.status==="completed")return;Te.info({parentId:c.id,childCount:o.length},"All children completed \u2014 cascading parent completion"),n.updateStatus(c.id,"completed",t||void 0),n.clearWorkingSet(c.id);let{claims:l}=N.getInstance(s);l.releaseAllForMission(c.id),i.create({mission_id:c.id,type:"system",content:`Parent auto-completed: all ${o.length} child missions finished`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:t});try{await new mt(s).distillMission(c.id),Te.info({parentId:c.id},"Parent Auto-Synthesis completed")}catch(p){Te.info({parentId:c.id,...Re(p)},"Parent Auto-Synthesis deferred")}try{await new Ze(s).syncMissionToGitNotes(c.id)}catch(p){Te.info({parentId:c.id,...Re(p)},"Parent Git Notes sync deferred")}await $c(s,c.id,t)}async function Pc(s){let{repoPath:e,missionId:t,stepId:n,status:i,contextPivot:r,updates:o,artifacts:a}=s,{missions:c,intentLogs:l}=N.getInstance(e),p=Ke(e);Te.info({repoPath:e,missionId:t,singleStep:n,batchCount:o?.length,artifactCount:a?.length},"Updating mission status");try{if(a&&Array.isArray(a))for(let h of a)c.addArtifact(t,h.type,h.identifier,h.metadata);let u=[];if(o&&Array.isArray(o)&&u.push(...o),n&&i&&u.push({stepId:n,status:i,contextPivot:r}),i&&!n){if(c.updateStatus(t,i,p||void 0),i==="completed"){c.clearWorkingSet(t);let{claims:h}=N.getInstance(e),m=h.releaseAllForMission(t);m>0&&Te.info({missionId:t,released:m},"Auto-released file claims on completion")}if(l.create({mission_id:t,type:"system",content:`Mission status changed to "${i}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),i==="completed"){try{await new mt(e).distillMission(t),Te.info({missionId:t},"Auto-Synthesis completed successfully")}catch(h){Te.info({missionId:t,...Re(h)},"Auto-Synthesis deferred or failed")}await $c(e,t,p)}if(!u.length)return{content:[{type:"text",text:JSON.stringify({missionId:t,status:i,message:"Mission status updated successfully.",artifacts_added:a?.length||0,commit:p},null,2)}]}}if(u.length===0&&(!a||a.length===0))throw new Error("No updates provided. Must specify either 'updates', 'stepId'/'status', 'status' (top-level), or 'artifacts'.");let d=[];for(let h of u){let{stepId:m,status:f,contextPivot:S}=h,y=c.findById(t);if(!y)throw new Error(`Mission ID ${t} not found`);let _=JSON.parse(y.strategy_graph||"{}"),E=null;if(Array.isArray(_)?E=_.find(R=>R.id===m):_.nodes&&Array.isArray(_.nodes)?E=_.nodes.find(R=>R.id===m):_.steps?Array.isArray(_.steps)?E=_.steps.find(R=>R.id===m):E=_.steps[m]:_[m]&&(E=_[m]),!E)throw new Error(`Step ID "${m}" not found`);if(f==="completed"&&E.verification){let R=new ts,T=Array.isArray(E.verification)?E.verification:[E.verification];for(let k of T){let F=k;if(typeof k=="string"){if(k.trim().split(/\s+/).length>=5){Te.warn({rule:k},"Skipping natural-language verification rule");continue}F={type:"pattern",target:k}}if(!F||!F.target){Te.warn({rule:k},"Skipping invalid verification rule (missing target)");continue}if(typeof F.target=="string"&&F.target.trim().split(/\s+/).length>=5){Te.warn({rule:F},"Skipping natural-language verification target");continue}let B=F.filePath;if(B&&(B=lr(e,B)),B){if(!ns.existsSync(B))throw new Error(`Verification failed: File not found at ${B}`);let M=await R.verify(ns.readFileSync(B,"utf8"),F);if(!M.passed)throw new Error(`Verification failed: ${M.errors.join("")}`)}else{let M=c.getWorkingSet(t),v=!1;M.length===0&&Te.warn("No working set files to verify against for rule");for(let I of M){let $=lr(e,I.file_path);if(!ns.existsSync($))continue;if((await R.verify(ns.readFileSync($,"utf8"),F)).passed){v=!0;break}}if(!v)throw new Error(`Verification failed: Rule "${F.target}" not satisfied in any working set file.`)}}}if(E.status=f,c.update(t,{strategy_graph:JSON.stringify(_),commit_sha:p}),l.create({mission_id:t,type:"system",content:`Step "${m}" updated to "${f}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),S){let R=S.trim();if(R.startsWith("{")||R.startsWith("["))try{let T=JSON.parse(R);if(T.files&&Array.isArray(T.files)){c.clearWorkingSet(t);for(let k of T.files)c.addToWorkingSet(t,lr(e,k))}}catch(T){Te.warn({error:T},"Failed to apply context pivot")}}d.push({stepId:m,status:f})}try{await new Ze(e).syncMissionToGitNotes(t)}catch(h){Te.info({missionId:t,...Re(h)},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:t,updates:d,artifacts_added:a?.length||0,message:"Status updated",commit:p},null,2)}]}}catch(u){let d=qt(u);throw Te.error({repoPath:e,...Re(u)},"Failed to update status"),new Error(`Failed to update status: ${d}`)}}G();var Fc=w.child({module:"mcp:tools:ops:graph"});async function Wc(s){let{repoPath:e,missionId:t,depth:n,limit:i,format:r="mermaid"}=s;Fc.info({repoPath:e,missionId:t,format:r},"Generating mission graph");try{let{GraphExporterService:o}=await Promise.resolve().then(()=>(Oc(),Dc));return{content:[{type:"text",text:await new o(e).generateGraph({includeCompleted:!0,format:r,focusMissionId:t,depth:n,limit:i})}]}}catch(o){throw Fc.error({error:o,repoPath:e},"Failed to generate mission graph"),new Error(`Failed to generate mission graph: ${o.message}`)}}Y();G();import zc from"node:path";var dn=w.child({module:"mcp:tools:ops:log"}),Gd=["in-progress","verifying"];function qd(s){for(let e of Gd){let t=s.find(n=>n.status===e);if(t)return t.id}return s[0]?.id??null}function Vd(s,e){return e?zc.isAbsolute(e)?e:zc.join(s,e):null}async function Hc(s){let{repoPath:e,missionId:t,type:n,content:i,filePath:r,symbolName:o,standalone:a}=s;dn.info({repoPath:e,type:n,symbolName:o,standalone:a},"Logging intent");let{missions:c,exports:l,intentLogs:p}=N.getInstance(e),u=Vd(e,r);try{let d=t??null,h=be(e)||void 0;if(a)d=null,dn.debug("Standalone intent requested; mission auto-resolution skipped");else if(d){if(!c.findById(d))throw new Error(`Mission ${d} not found. Use shadow_ops_briefing to see available missions.`)}else{let E=c.findActive(h);E.length>0?(d=qd(E),dn.debug({missionId:d,currentBranch:h},"Auto-resolved to active mission on current branch")):(d=null,dn.debug({currentBranch:h},"No active mission found on current branch; logging as system/unlinked intent"))}let m=null,f=null,S=o||null,y=u;if(o){let R=(u?l.findByNameAndFile(o,u):l.findByName(o))[0];R?(m=R.id,f=R.signature,S=R.name,y=R.file_path||y):dn.warn({symbolName:o,filePath:u??r},"Symbol not found for intent linking")}let _=p.create({mission_id:d,symbol_id:m,file_path:y,type:n,content:i,confidence:1,symbol_name:S,signature:f,commit_sha:null});return d&&y&&c.addToWorkingSet(d,y,m?"symbol":"intent"),{content:[{type:"text",text:JSON.stringify({logId:_,missionId:d,symbolId:m,status:"logged",message:m?`Intent linked to symbol "${o}"`:"Intent logged (unlinked)"},null,2)}]}}catch(d){throw dn.error({error:d,repoPath:e},"Failed to log intent"),new Error(`Failed to log intent: ${d instanceof Error?d.message:String(d)}`)}}Y();G();var Bc=w.child({module:"mcp:tools:ops:synthesize"});async function Uc(s){let{repoPath:e,missionId:t}=s;Bc.info({repoPath:e,missionId:t},"Synthesizing mission");let{missions:n}=N.getInstance(e);try{if(!n.findById(t))throw new Error(`Mission ${t} not found`);let o=await new mt(e).distillMission(t);return{content:[{type:"text",text:JSON.stringify({missionId:t,adr:o.adr,metrics:o.metrics},null,2)}]}}catch(i){throw Bc.error({error:i,repoPath:e},"Failed to synthesize ADR"),new Error(`Failed to synthesize ADR: ${i instanceof Error?i.message:String(i)}`)}}import Jd from"path";var oe={...b,box:ue,table:ni,list:oo};async function jc(s){let[e,...t]=s;if(!e||!["plan","briefing","update","log","synthesize","graph"].includes(e)){console.log(""),console.log(`  ${oe.bold("Usage: ")} liquid-shadow mission <action> [options]`),console.log(""),console.log(`  ${oe.bold("Actions: ")}`),console.log(`    ${oe.cyan("plan")} <repo> <name> <goal>      Plan a new mission`),console.log(`    ${oe.cyan("update")} <repo> <id> <status>    Update mission status`),console.log(`    ${oe.cyan("log")} <repo> <id> <type> <msg>   Log a mission discovery/intent`),console.log(`    ${oe.cyan("briefing")} <repo> [--branch]     Get mission briefing`),console.log(`    ${oe.cyan("synthesize")} <repo> <id>        Distill mission into ADR`),console.log(`    ${oe.cyan("graph")} <repo> [id]             Generate mission lineage graph`),console.log("");return}await Q(async()=>{let n=t[0]?Jd.resolve(t[0]):process.cwd();switch(e){case"plan":{let[i,r,o]=t;if(!r||!o){console.error(`  ${oe.red("\u2716")} Usage: mission plan <repo> <name> <goal>`);return}let a=await Cc({repoPath:n,name:r,goal:o}),c=JSON.parse(a.content[0].text);console.log(`  ${oe.green("\u2714")} Mission planned (ID: ${c.missionId})`);break}case"update":{let[i,r,o]=t;if(!r||!o){console.error(`  ${oe.red("\u2716")} Usage: mission update <repo> <id> <status>`);return}await Pc({repoPath:n,missionId:parseInt(r),status:o}),console.log(`  ${oe.green("\u2714")} Status updated to ${o}`);break}case"log":{let[i,r,o,...a]=t;if(!r||!o||a.length===0){console.error(`  ${oe.red("\u2716")} Usage: mission log <repo> <id> <type> <message>`);return}await Hc({repoPath:n,missionId:parseInt(r),type:o,content:a.join(" ")}),console.log(`  ${oe.green("\u2714")} Intent logged`);break}case"synthesize":{let[i,r]=t;if(!r){console.error(`  ${oe.red("\u2716")} Usage: mission synthesize <repo> <id>`);return}let o=await Uc({repoPath:n,missionId:parseInt(r)});console.log(""),oe.box("Mission Synthesis (ADR)",o.content[0].text,"magenta");break}case"graph":{let[i,r]=t,o=await Wc({repoPath:n,missionId:r?parseInt(r):void 0,format:"mermaid"});console.log(""),console.log(o.content[0].text);break}case"briefing":{let i=await Lc({repoPath:n});if(i.content&&i.content[0]){let r=i.content[0].text;try{let o=JSON.parse(r);if(o.mission){console.log(""),console.log(oe.bold(oe.cyan(` Mission Dashboard: ${o.mission.name} `))),oe.box("Tactical Goal",o.mission.goal,"cyan");let a=o.mission.status==="completed"?"green":o.mission.status==="failed"?"red":"yellow",c=[["Status",oe.bold(oe[a](o.mission.status.toUpperCase()))],["ID",`#${o.mission.id}`],["Branch",o.mission.git_branch||"main"]];oe.table(["Field","Value"],c),o.recent_activity&&o.recent_activity.length>0&&(console.log(`  ${oe.bold("Recent Activity:")}`),oe.list(o.recent_activity.slice(0,5).map(l=>`${oe.dim(`[${l.type.toUpperCase()}]`)} ${l.content}`)))}else console.log(r)}catch{console.log(r)}}break}}})}import ur from"path";async function Gc(s){let[e,...t]=s;if(!e||!["symbol","file"].includes(e)){console.log(""),console.log(`  ${b.bold("Usage: ")} liquid-shadow inspect <symbol|file> [options]`),console.log(""),console.log(`  ${b.bold("Actions: ")}`),console.log(`    ${b.cyan("symbol")} <repo> <name>    Read source code for a symbol`),console.log(`    ${b.cyan("file")} <repo> <path>     Get a token-efficient file summary`),console.log("");return}await Q(async()=>{let n=t[0]?ur.resolve(t[0]):process.cwd();if(e==="symbol"){let i=t[1];if(!i){console.error(`  ${b.red("\u2716")} Please provide a symbol name`);return}let r=await pn({repoPath:n,symbolName:i});console.log(""),r.content&&r.content[0]&&console.log(r.content[0].text)}else{let i=t[1];if(!i){console.error(`  ${b.red("\u2716")} Please provide a file path`);return}let r=ur.isAbsolute(i)?i:ur.join(n,i),o=await Hi({repoPath:n,filePath:r});console.log(""),o.content&&o.content[0]&&console.log(o.content[0].text)}})}var qc=["index","status","metrics","benchmark","tree","trace","watch","search-config","search-concept","search-symbol","search-fuzzy","hooks","workspace","mission","inspect","completion"],Yd=["--help","-h","--version","-v","--dir","-d"],Kd={index:["--output","-o","--level","-l","--subPath","--force","--deep"],tree:["--subPath","--depth","-d"],trace:["--dir","-d"],"search-config":["--dir","-d","--kind"],"search-concept":["--dir","-d","--interactive","-i"],"search-symbol":["--dir","-d","--interactive","-i"],"search-fuzzy":["--dir","-d","--interactive","-i"]};function Qd(){let s=Object.entries(Kd).map(([n,i])=>`    ${n}) opts="${i.join(" ")}" ;;`).join(`
+`),e=qc.join(" ");return`# Bash completion for liquid-shadow. Usage: source <(liquid-shadow completion bash)
 _liquid_shadow() {
   local cur="\${COMP_WORDS[COMP_CWORD]}"
   local words=("\${COMP_WORDS[@]}")
@@ -1005,7 +1060,7 @@ _liquid_shadow() {
     if [[ "\${words[$i]}" != -* ]]; then cmd="\${words[$i]}"; break; fi
     ((i++))
   done
-  local opts="${Id.join(" ")}"
+  local opts="${Yd.join(" ")}"
   if [ -n "$cmd" ]; then
     case "$cmd" in
 ${s}
@@ -1017,11 +1072,11 @@ ${s}
   COMPREPLY=($(compgen -W "$opts" -- "$cur"))
 }
 complete -F _liquid_shadow liquid-shadow
-`}function Ad(){return`# Zsh completion for liquid-shadow. Usage: source <(liquid-shadow completion zsh)
+`}function Zd(){return`# Zsh completion for liquid-shadow. Usage: source <(liquid-shadow completion zsh)
 # Run after compinit (e.g. in .zshrc after compinit)
 
 _liquid_shadow() {
-  local -a cmds; cmds=(${Ec.map(e=>`'${e}'`).join(" ")})
+  local -a cmds; cmds=(${qc.map(e=>`'${e}'`).join(" ")})
   if [ $CURRENT -eq 2 ]; then
     _describe 'command' cmds
     return
@@ -1038,7 +1093,7 @@ _liquid_shadow() {
   _describe 'flag' fl
 }
 compdef _liquid_shadow liquid-shadow
-`}async function Sc(s){s==="bash"?console.log($d()):s==="zsh"?console.log(Ad()):(console.error("Usage: liquid-shadow completion <bash|zsh>"),console.error("Then: source <(liquid-shadow completion bash)  # or zsh"),process.exit(1))}import Pd from"fs";import Md from"path";var Nd=2e3;async function wc(s){let e=Md.resolve(s);await Y(async()=>{pe("Watch mode");let t=Ke(e),n=null,i=()=>{n&&clearTimeout(n),n=setTimeout(async()=>{n=null;try{console.log(""),console.log(y.dim("  Changes detected, reindexing...")),await X(e,5,!1,!0),console.log(y.green("  Reindex complete."))}catch(r){console.error(y.red("  Reindex failed:"),r instanceof Error?r.message:r)}},Nd)};try{Pd.watch(e,{recursive:!0},(r,o)=>{o&&!o.includes("node_modules")&&i()}),console.log(y.cyan(`  Watching ${e}`)),console.log(y.dim("  Ignore: "+(t.ignore?.length?t.ignore.join(", "):"default"))),Pe("Ctrl+C to stop"),await new Promise((r,o)=>{process.on("SIGINT",()=>o(new Error("SIGINT"))),process.on("SIGTERM",()=>o(new Error("SIGTERM")))}).catch(()=>{})}finally{n&&clearTimeout(n),await Q(e)}})}V();q();var Dd=S.child({module:"narrative-service"}),ji=class{missions;briefingEngine;repoPath;constructor(e){this.repoPath=e;let{missions:t}=O.getInstance(e);this.missions=t,this.briefingEngine=new tt(e)}async generateChronicle(e={}){Dd.info(e,"Generating Repo Chronicle...");let n=this.missions.findAll().filter(l=>l.parent_id===null&&l.status!=="planned");e.branch&&(n=n.filter(l=>!l.git_branch||l.git_branch===e.branch)),e.since&&(n=n.filter(l=>l.updated_at>=e.since)),e.until&&(n=n.filter(l=>l.updated_at<=e.until)),n.sort((l,p)=>p.updated_at-l.updated_at);let i=e.offset||0,r=e.limit||10;n=n.slice(i,i+r);let o=[],a=[],c=[];for(let l of n){let p=this.missions.findByParentId(l.id),u=p.length>0,d=await this.briefingEngine.distillMission(l.id,!1);if(u){let h=[];for(let f of p)h.push(await this.mapMissionToEpisode(f));h.unshift(await this.mapMissionToEpisode(l));let m={kind:"initiative",root_mission_id:l.id,title:l.name,strategy_graph:l.strategy_graph?JSON.parse(l.strategy_graph):{},episodes:e.compact?[]:h,synthesized_narrative:e.compact?this.truncateText(d.adr):d.adr||""};o.push(m),c.push(m)}else{let h=await this.mapMissionToEpisode(l,d.adr,e.compact);a.push(h),c.push(h)}}return{repo_path:this.repoPath,generated_at:Date.now(),initiatives:o,unattached_episodes:a,timeline:c}}async mapMissionToEpisode(e,t,n=!1){let i=t;return i||(i=(await this.briefingEngine.distillMission(e.id,!1)).adr),{kind:"episode",mission_id:e.id,title:e.name,goal:e.goal,outcome:e.outcome_contract,intents:[],adr_summary:n?this.truncateText(i):i}}truncateText(e,t=300){return e?e.length<=t?e:e.slice(0,t)+"... (truncated)":""}renderChronicleMarkdown(e){let t=`# Repository Chronicle
+`}async function Vc(s){s==="bash"?console.log(Qd()):s==="zsh"?console.log(Zd()):(console.error("Usage: liquid-shadow completion <bash|zsh>"),console.error("Then: source <(liquid-shadow completion bash)  # or zsh"),process.exit(1))}import Xd from"fs";import em from"path";var tm=2e3;async function Jc(s){let e=em.resolve(s);await Q(async()=>{ge("Watch mode");let t=ct(e),n=null,i=()=>{n&&clearTimeout(n),n=setTimeout(async()=>{n=null;try{console.log(""),console.log(b.dim("  Changes detected, reindexing...")),await ie(e,5,!1,!0),console.log(b.green("  Reindex complete."))}catch(r){console.error(b.red("  Reindex failed:"),r instanceof Error?r.message:r)}},tm)};try{Xd.watch(e,{recursive:!0},(r,o)=>{o&&!o.includes("node_modules")&&i()}),console.log(b.cyan(`  Watching ${e}`)),console.log(b.dim("  Ignore: "+(t.ignore?.length?t.ignore.join(", "):"default"))),Ve("Ctrl+C to stop"),await new Promise((r,o)=>{process.on("SIGINT",()=>o(new Error("SIGINT"))),process.on("SIGTERM",()=>o(new Error("SIGTERM")))}).catch(()=>{})}finally{n&&clearTimeout(n),await ne(e)}})}Y();G();var nm=w.child({module:"narrative-service"}),is=class{missions;briefingEngine;repoPath;constructor(e){this.repoPath=e;let{missions:t}=N.getInstance(e);this.missions=t,this.briefingEngine=new mt(e)}async generateChronicle(e={}){nm.info(e,"Generating Repo Chronicle...");let n=this.missions.findAll().filter(l=>l.parent_id===null&&l.status!=="planned");e.branch&&(n=n.filter(l=>!l.git_branch||l.git_branch===e.branch)),e.since&&(n=n.filter(l=>l.updated_at>=e.since)),e.until&&(n=n.filter(l=>l.updated_at<=e.until)),n.sort((l,p)=>p.updated_at-l.updated_at);let i=e.offset||0,r=e.limit||10;n=n.slice(i,i+r);let o=[],a=[],c=[];for(let l of n){let p=this.missions.findByParentId(l.id),u=p.length>0,d=await this.briefingEngine.distillMission(l.id,!1);if(u){let h=[];for(let f of p)h.push(await this.mapMissionToEpisode(f));h.unshift(await this.mapMissionToEpisode(l));let m={kind:"initiative",root_mission_id:l.id,title:l.name,strategy_graph:l.strategy_graph?JSON.parse(l.strategy_graph):{},episodes:e.compact?[]:h,synthesized_narrative:e.compact?this.truncateText(d.adr):d.adr||""};o.push(m),c.push(m)}else{let h=await this.mapMissionToEpisode(l,d.adr,e.compact);a.push(h),c.push(h)}}return{repo_path:this.repoPath,generated_at:Date.now(),initiatives:o,unattached_episodes:a,timeline:c}}async mapMissionToEpisode(e,t,n=!1){let i=t;return i||(i=(await this.briefingEngine.distillMission(e.id,!1)).adr),{kind:"episode",mission_id:e.id,title:e.name,goal:e.goal,outcome:e.outcome_contract,intents:[],adr_summary:n?this.truncateText(i):i}}truncateText(e,t=300){return e?e.length<=t?e:e.slice(0,t)+"... (truncated)":""}renderChronicleMarkdown(e){let t=`# Repository Chronicle
 
 `;if(t+=`*Generated at ${new Date(e.generated_at).toISOString()}*
 
@@ -1049,7 +1104,7 @@ compdef _liquid_shadow liquid-shadow
 `,t+=`${n.adr_summary}
 
 `),t+=`---
-`;return t}};q();import Od from"path";async function xc(s,e){let t=Od.resolve(s||process.cwd()),n=e.format==="json"?"json":"markdown",i=S.child({module:"cli:chronicle",repoPath:t});i.info("Generating repository chronicle...");try{let r=new ji(t),o=await r.generateChronicle({limit:e.limit,offset:e.offset,since:e.since,until:e.until});console.log(n==="json"?JSON.stringify(o,null,2):r.renderChronicleMarkdown(o))}catch(r){i.error({error:r},"Failed to generate chronicle"),console.error(`Error: ${r instanceof Error?r.message:String(r)}`),process.exit(1)}}import bt from"fs";import Zt from"path";import Hd from"os";import $e from"fs";import Je from"path";import Fd from"os";var vc={shadow_audit:'---\nname: audit\ndescription: Perform codebase health audits to identify dead code, circular dependencies, and technical debt. Use when auditing code quality, finding unused code, detecting circular dependencies, or when the user asks about codebase health, technical debt, or code cleanup.\n---\n\n# Codebase Audit\n\nComprehensive health audit using Shadow analyze toolkit.\n\n## \u{1F680} Workflow\n\n1. **Session Context**: `shadow_ops_context` (repoPath) \u2014 **ONE CALL** for hologram + chronicle + briefing. Get architecture baseline.\n2. **Dead Code Detection**: `shadow_analyze_debt` (mode: "dead-code", limit: 100, includeTests: false, repoPath) \u2014 Unused exports.\n3. **Circular Dependencies**: `shadow_analyze_debt` (mode: "circular-deps", limit: 20, repoPath) \u2014 Import cycles.\n4. **Layer Integrity** (optional): `shadow_recon_topography` (repoPath) \u2014 Detailed layer analysis if hologram summary isn\'t enough.\n5. **Log Findings**: `shadow_ops_log` (missionId, type: "discovery", content, repoPath).\n6. **Create Cleanup Mission** (optional): `shadow_ops_plan` (name: "Codebase Cleanup", templateId: "refactoring", templateVars, repoPath).\n\n## \u{1F6E0} Precise Tooling\n\n| Audit Target         | Atomic Tool                                                                            |\n| :------------------- | :------------------------------------------------------------------------------------- |\n| **Session Start** \u{1F680} | `shadow_ops_context` (repoPath) \u2014 **START HERE** for baseline                          |\n| **Architecture**     | `shadow_recon_hologram` (repoPath) \u2014 if you need standalone                            |\n| **Dead Code**        | `shadow_analyze_debt` (mode: "dead-code", limit: 100, **confidenceThreshold: "high"**) |\n| **Circular Deps**    | `shadow_analyze_debt` (mode: "circular-deps")                                          |\n| **Layers**           | `shadow_recon_topography` \u2014 detailed breakdown if needed                               |\n| **Config Audit**     | `shadow_search_config` (kind: "Env", **showUsage: true**) \u2014 find orphaned env vars     |\n| **Event Mesh**       | `shadow_analyze_mesh` (repoPath) \u2014 audit all HTTP routes, socket events, pubsub topics |\n| **Type Integrity**   | `shadow_analyze_type_graph` (filePath, repoPath) \u2014 interface/type inheritance chains   |\n| **Theme Patterns**   | `shadow_ops_crystallize_theme` (query, repoPath) \u2014 recurring issues across missions    |\n\n## \u{1F4A1} Intelligence Options\n\n- **`shadow_analyze_debt` confidence levels**: Use `confidenceThreshold: "high"` for likely dead code, `"medium"` for possibly intentional (test fixtures, etc.), `"all"` for everything.\n- **`shadow_analyze_debt` exclusion filters**: Use `excludePatterns`, `includeMigrations: false`, `includeFixtures: false` to reduce noise.\n- **`shadow_search_config` with `showUsage: true`**: Cross-references config vars with code to show usage counts and identify orphaned vars (defined but never used).\n\n## \u{1F50D} Health Criteria\n\n- **Critical Issues**: Circular deps in core logic, >50 dead exports, orphaned env vars with secrets\n- **Warning Signs**: Layer violations (Test \u2192 Logic), >20 dead exports, >10 orphaned configs\n- **Good Health**: Clean layers, <10 dead exports, no circular deps, all configs in use\n',shadow_chronicle:`---
+`;return t}};G();import im from"path";async function Yc(s,e){let t=im.resolve(s||process.cwd()),n=e.format==="json"?"json":"markdown",i=w.child({module:"cli:chronicle",repoPath:t});i.info("Generating repository chronicle...");try{let r=new is(t),o=await r.generateChronicle({limit:e.limit,offset:e.offset,since:e.since,until:e.until});console.log(n==="json"?JSON.stringify(o,null,2):r.renderChronicleMarkdown(o))}catch(r){i.error({error:r},"Failed to generate chronicle"),console.error(`Error: ${r instanceof Error?r.message:String(r)}`),process.exit(1)}}import At from"fs";import mn from"path";import om from"os";import He from"fs";import rt from"path";import sm from"os";var Kc={shadow_audit:'---\nname: audit\ndescription: Perform codebase health audits to identify dead code, circular dependencies, and technical debt. Use when auditing code quality, finding unused code, detecting circular dependencies, or when the user asks about codebase health, technical debt, or code cleanup.\n---\n\n# Codebase Audit\n\nComprehensive health audit using Shadow analyze toolkit.\n\n## \u{1F680} Workflow\n\n1. **Session Context**: `shadow_ops_context` (repoPath) \u2014 **ONE CALL** for hologram + chronicle + briefing. Get architecture baseline.\n2. **Dead Code Detection**: `shadow_analyze_debt` (mode: "dead-code", limit: 100, includeTests: false, repoPath) \u2014 Unused exports.\n3. **Circular Dependencies**: `shadow_analyze_debt` (mode: "circular-deps", limit: 20, repoPath) \u2014 Import cycles.\n4. **Layer Integrity** (optional): `shadow_recon_topography` (repoPath) \u2014 Detailed layer analysis if hologram summary isn\'t enough.\n5. **Log Findings**: `shadow_ops_log` (missionId, type: "discovery", content, repoPath).\n6. **Create Cleanup Mission** (optional): `shadow_ops_plan` (name: "Codebase Cleanup", templateId: "refactoring", templateVars, repoPath).\n\n## \u{1F6E0} Precise Tooling\n\n| Audit Target         | Atomic Tool                                                                            |\n| :------------------- | :------------------------------------------------------------------------------------- |\n| **Session Start** \u{1F680} | `shadow_ops_context` (repoPath) \u2014 **START HERE** for baseline                          |\n| **Architecture**     | `shadow_recon_hologram` (repoPath) \u2014 if you need standalone                            |\n| **Dead Code**        | `shadow_analyze_debt` (mode: "dead-code", limit: 100, **confidenceThreshold: "high"**) |\n| **Circular Deps**    | `shadow_analyze_debt` (mode: "circular-deps")                                          |\n| **Layers**           | `shadow_recon_topography` \u2014 detailed breakdown if needed                               |\n| **Config Audit**     | `shadow_search_config` (kind: "Env", **showUsage: true**) \u2014 find orphaned env vars     |\n| **Event Mesh**       | `shadow_analyze_mesh` (repoPath) \u2014 audit all HTTP routes, socket events, pubsub topics |\n| **Type Integrity**   | `shadow_analyze_type_graph` (filePath, repoPath) \u2014 interface/type inheritance chains   |\n| **Theme Patterns**   | `shadow_ops_crystallize_theme` (query, repoPath) \u2014 recurring issues across missions    |\n\n## \u{1F4A1} Intelligence Options\n\n- **`shadow_analyze_debt` confidence levels**: Use `confidenceThreshold: "high"` for likely dead code, `"medium"` for possibly intentional (test fixtures, etc.), `"all"` for everything.\n- **`shadow_analyze_debt` exclusion filters**: Use `excludePatterns`, `includeMigrations: false`, `includeFixtures: false` to reduce noise.\n- **`shadow_search_config` with `showUsage: true`**: Cross-references config vars with code to show usage counts and identify orphaned vars (defined but never used).\n\n## \u{1F50D} Health Criteria\n\n- **Critical Issues**: Circular deps in core logic, >50 dead exports, orphaned env vars with secrets\n- **Warning Signs**: Layer violations (Test \u2192 Logic), >20 dead exports, >10 orphaned configs\n- **Good Health**: Clean layers, <10 dead exports, no circular deps, all configs in use\n',shadow_chronicle:`---
 name: chronicle
 description: Retrieve and analyze the repository's narrative archive as recorded in Git-native memory. Use when you need to understand historical decisions, catch up on repository progress, review recently completed missions, or when the user asks for a project history, changelog, or chronological overview of architectural changes.
 ---
@@ -1368,9 +1423,9 @@ _Note: Use fused search after \`shadow_workspace_fuse\` to look up concepts acro
 ## \u{1F6E0} Tooling Strategy
 
 Use **\`shadow_workspace_fuse\`** early in multi-repo sessions to unlock "X-Ray" vision across boundaries.
-`};import*as nt from"@clack/prompts";function Wd(s){return[{name:"Claude Code",dir:Je.join(s,".claude","skills"),folderBased:!0,createIfMissing:!1},{name:"Cursor",dir:Je.join(s,".cursor","skills"),folderBased:!0,createIfMissing:!1},{name:"Gemini CLI",dir:Je.join(s,".gemini","skills"),folderBased:!0,createIfMissing:!0},{name:"Codex",dir:Je.join(s,".codex","skills"),folderBased:!0,createIfMissing:!1},{name:"Antigravity",dir:Je.join(s,".gemini","antigravity","global_workflows"),folderBased:!1,createIfMissing:!1}]}function Ys(s=!1){let e=Fd.homedir(),t=Wd(e),n=0;for(let i of t){if(!$e.existsSync(i.dir))if(i.createIfMissing)$e.mkdirSync(i.dir,{recursive:!0});else continue;if(i.folderBased)try{for(let r of $e.readdirSync(i.dir))r.startsWith("shadow_shadow_")&&$e.rmSync(Je.join(i.dir,r),{recursive:!0,force:!0})}catch{}for(let[r,o]of Object.entries(vc))if(i.folderBased){let a=Je.join(i.dir,r);$e.existsSync(a)||$e.mkdirSync(a,{recursive:!0});let c=Je.join(a,"skill.md");$e.existsSync(c)&&$e.unlinkSync(c);let l=Je.join(a,"SKILL.md");(s||!$e.existsSync(l))&&($e.writeFileSync(l,o),n++)}else{let a=Je.join(i.dir,`${r}.md`);(s||!$e.existsSync(a))&&($e.writeFileSync(a,o),n++)}}return n}async function Tc(){nt.intro("\u{1F311} Liquid Shadow: Skills Update");let s=nt.spinner();s.start("Deploying latest skill definitions...");let e=Ys(!0);s.stop("Done."),e>0?nt.note(`Updated ${e} skill files across all detected targets.`,"Manifest"):nt.note("No skill targets found (Claude Code, Cursor, Gemini CLI, Codex, Antigravity).","Manifest"),nt.outro("\u{1F311} Skills are up to date.")}import{pino as zd}from"pino";import*as de from"@clack/prompts";var it=zd({transport:{target:"pino-pretty",options:{colorize:!0}}}),Pt="liquid-shadow",Ks="liquid-shadow-mcp";function Ud(s){let e=(s||Ks).trim();return e.length>0?e:Ks}function jd(s){let e=[],t=/[^\s"']+|"([^"]*)"|'([^']*)'/g,n;for(;(n=t.exec(s))!==null;)e.push(n[1]??n[2]??n[0]??"");return e}function kc(s){if(!s)return[];let e=s.trim();if(!e)return[];if(e.startsWith("[")){let t;try{t=JSON.parse(e)}catch{throw new Error('--mcp-args JSON parsing failed. Use a valid JSON array like ["--flag","value"].')}if(!Array.isArray(t)||t.some(n=>typeof n!="string"))throw new Error("--mcp-args JSON must be an array of strings.");return t}return jd(e)}function Rc(s){return s.replaceAll("\\","\\\\").replaceAll('"','\\"')}function Bd(s,e){let t=`[${e.map(n=>`"${Rc(n)}"`).join(", ")}]`;return`[mcp_servers.${Pt}]
-command = "${Rc(s)}"
-args = ${t}`}function Gd(s,e,t){let n=s.split(/\r?\n/),i=n.findIndex(c=>c.trim()===e);if(i===-1)return`${s.length===0||s.endsWith(`
+`};import*as ht from"@clack/prompts";function rm(s){return[{name:"Claude Code",dir:rt.join(s,".claude","skills"),folderBased:!0,createIfMissing:!1},{name:"Cursor",dir:rt.join(s,".cursor","skills"),folderBased:!0,createIfMissing:!1},{name:"Gemini CLI",dir:rt.join(s,".gemini","skills"),folderBased:!0,createIfMissing:!0},{name:"Codex",dir:rt.join(s,".codex","skills"),folderBased:!0,createIfMissing:!1},{name:"Antigravity",dir:rt.join(s,".gemini","antigravity","global_workflows"),folderBased:!1,createIfMissing:!1}]}function dr(s=!1){let e=sm.homedir(),t=rm(e),n=0;for(let i of t){if(!He.existsSync(i.dir))if(i.createIfMissing)He.mkdirSync(i.dir,{recursive:!0});else continue;if(i.folderBased)try{for(let r of He.readdirSync(i.dir))r.startsWith("shadow_shadow_")&&He.rmSync(rt.join(i.dir,r),{recursive:!0,force:!0})}catch{}for(let[r,o]of Object.entries(Kc))if(i.folderBased){let a=rt.join(i.dir,r);He.existsSync(a)||He.mkdirSync(a,{recursive:!0});let c=rt.join(a,"skill.md");He.existsSync(c)&&He.unlinkSync(c);let l=rt.join(a,"SKILL.md");(s||!He.existsSync(l))&&(He.writeFileSync(l,o),n++)}else{let a=rt.join(i.dir,`${r}.md`);(s||!He.existsSync(a))&&(He.writeFileSync(a,o),n++)}}return n}async function Qc(){ht.intro("\u{1F311} Liquid Shadow: Skills Update");let s=ht.spinner();s.start("Deploying latest skill definitions...");let e=dr(!0);s.stop("Done."),e>0?ht.note(`Updated ${e} skill files across all detected targets.`,"Manifest"):ht.note("No skill targets found (Claude Code, Cursor, Gemini CLI, Codex, Antigravity).","Manifest"),ht.outro("\u{1F311} Skills are up to date.")}import{pino as am}from"pino";import*as _e from"@clack/prompts";var ft=am({transport:{target:"pino-pretty",options:{colorize:!0}}}),Vt="liquid-shadow",mr="liquid-shadow-mcp";function cm(s){let e=(s||mr).trim();return e.length>0?e:mr}function lm(s){let e=[],t=/[^\s"']+|"([^"]*)"|'([^']*)'/g,n;for(;(n=t.exec(s))!==null;)e.push(n[1]??n[2]??n[0]??"");return e}function Xc(s){if(!s)return[];let e=s.trim();if(!e)return[];if(e.startsWith("[")){let t;try{t=JSON.parse(e)}catch{throw new Error('--mcp-args JSON parsing failed. Use a valid JSON array like ["--flag","value"].')}if(!Array.isArray(t)||t.some(n=>typeof n!="string"))throw new Error("--mcp-args JSON must be an array of strings.");return t}return lm(e)}function Zc(s){return s.replaceAll("\\","\\\\").replaceAll('"','\\"')}function pm(s,e){let t=`[${e.map(n=>`"${Zc(n)}"`).join(", ")}]`;return`[mcp_servers.${Vt}]
+command = "${Zc(s)}"
+args = ${t}`}function um(s,e,t){let n=s.split(/\r?\n/),i=n.findIndex(c=>c.trim()===e);if(i===-1)return`${s.length===0||s.endsWith(`
 `)?s:`${s}
 `}
 ${t}
@@ -1379,4 +1434,4 @@ ${t}
 `).replace(/\n{3,}/g,`
 
 `).trimEnd()}
-`}async function Cc(s=!1,e=!1,t=Ks,n=[]){de.intro("\u{1F311} Liquid Shadow: Tactical Onboarding");let i=Hd.homedir(),r=0,o=Ud(t),a=Array.isArray(n)?n:[],c=e||await de.confirm({message:"Deploy Autonomous Reasoning Skills? (Injects /onboard, /understand, etc.)",initialValue:!0});if(de.isCancel(c)){de.outro("Onboarding aborted.");return}let l=e||await de.confirm({message:"Connect to MCP Reasoning Engines? (Claude Code, Claude Desktop, Gemini CLI, Codex)",initialValue:!0});if(de.isCancel(l)){de.outro("Onboarding aborted.");return}if(!c&&!l){de.outro("No actions selected. Operational state unchanged.");return}let p=de.spinner();p.start("Establishing intelligence assets..."),c&&(r=Ys(!0)),l&&(qd(i,o,a,!0),Vd(i,o,a,!0)),p.stop("Intelligence layer established."),r>0?de.note(`Successfully deployed ${r} tactical skills.`,"Manifest"):de.note("No new skills deployed (up to date or scope skipped).","Manifest"),de.outro("\u{1F311} Liquid Shadow is operational.")}function qd(s,e,t,n){let i=[{name:"Claude Code",path:Zt.join(s,".claude.json"),extraFields:{type:"stdio"},createIfMissing:!1},{name:"Claude Desktop",path:Zt.join(s,"Library","Application Support","Claude","claude_desktop_config.json"),createIfMissing:!1},{name:"Gemini CLI",path:Zt.join(s,".gemini","settings.json"),createIfMissing:!0},{name:"Antigravity IDE",path:Zt.join(s,".gemini","antigravity","mcp_config.json"),createIfMissing:!1}];for(let r of i){if(!bt.existsSync(r.path))if(r.createIfMissing)bt.mkdirSync(Zt.dirname(r.path),{recursive:!0}),bt.writeFileSync(r.path,"{}");else{it.debug(`${r.name} config not found at ${r.path}, skipping.`);continue}try{let o=JSON.parse(bt.readFileSync(r.path,"utf8"));if(o.mcpServers||(o.mcpServers={}),o.mcpServers[Pt]){if(!n){it.info(`${r.name}: ${Pt} already configured.`);continue}it.info(`${r.name}: updating existing ${Pt} configuration.`)}o.mcpServers[Pt]={command:e,args:t,env:{},...r.extraFields??{}},bt.writeFileSync(r.path,JSON.stringify(o,null,2)),it.info(`Updated ${r.name} config at ${r.path}`)}catch(o){it.error(`Failed to update ${r.name} config at ${r.path}: ${o}`)}}}function Vd(s,e,t,n){let i=Zt.join(s,".codex","config.toml");if(!bt.existsSync(i)){it.debug(`Codex config not found at ${i}, skipping.`);return}try{let r=bt.readFileSync(i,"utf8"),o=`[mcp_servers.${Pt}]`,a=Bd(e,t);if(r.includes(o)&&!n){it.info(`Codex: ${Pt} already configured.`);return}let c=Gd(r,o,a);bt.writeFileSync(i,c),it.info(`Updated Codex config at ${i}`)}catch(r){it.error(`Failed to update Codex config at ${i}: ${r}`)}}St();import{readFileSync as Jd}from"node:fs";var en={name:"@precisionutilityguild/liquid-shadow",version:"0.0.0",license:"UNLICENSED",description:"Tactical Repository Intelligence Operative - Liquid Shadow Ecosystem"};function Ic(){let s=JSON.parse(Jd(_e("package.json"),"utf8"));return{name:typeof s.name=="string"&&s.name.trim().length>0?s.name:en.name,version:typeof s.version=="string"&&s.version.trim().length>0?s.version:en.version,license:typeof s.license=="string"&&s.license.trim().length>0?s.license:en.license,description:typeof s.description=="string"&&s.description.trim().length>0?s.description:en.description}}function be(s){let e=process.cwd();return Vi(e,s.flags)}process.on("unhandledRejection",s=>{console.error("\x1B[31mUnhandled Rejection:\x1B[0m",s),Q().then(()=>process.exit(1))});process.on("uncaughtException",s=>{console.error("\x1B[31mUncaught Exception:\x1B[0m",s),Q().then(()=>process.exit(1))});var Qs=en;try{Qs=Ic()}catch(s){console.error("Failed to parse package.json, using defaults",s)}var ie=Yd().name("liquid-shadow").version(Qs.version).description(Qs.description).scriptName("liquid-shadow");ie.command("index","Index the repository for AI analysis",{parameters:["[dir]"],flags:{output:{type:String,alias:"o",description:"Export to JSON file instead of indexing"},level:{type:String,alias:"l",description:"Detail level",default:"detailed"},subPath:{type:String,description:"Only process files within this subpath"},force:{type:Boolean,description:"Force re-indexing of all files",default:!1},deep:{type:Boolean,description:"Perform deep semantic indexing (headings + symbol embeddings)",default:!0}}}).on("index",async s=>{let e=be(s),t={...s.flags,dir:s.flags.dir??e.dir,level:s.flags.level??e.level,deep:s.flags.deep??e.deep};t.deep==="false"||t.deep===!1?t.deep=!1:t.deep=!0,await pa(s.parameters.dir||e.dir,t)});ie.command("status","Show current repository intelligence status",{parameters:["[dir]"]}).on("status",async s=>{let e=be(s);await Dr(s.parameters.dir||e.dir)});ie.command("dashboard","Operational intelligence dashboard (TUI)",{parameters:["[dir]"]}).on("dashboard",async s=>{let e=be(s);await cs(s.parameters.dir||e.dir)});ie.command("metrics","Show performance metrics and observability data",{parameters:["[dir]"]}).on("metrics",async s=>{let e=be(s);await Br(s.parameters.dir||e.dir)});ie.command("benchmark","Run performance benchmark on repository indexing",{parameters:["[dir]"]}).on("benchmark",async s=>{let e=be(s);await da(s.parameters.dir||e.dir)});ie.command("tree","Visualize repository structure as a tree",{parameters:["[dir]"],flags:{subPath:{type:String,description:"Subpath to visualize"},depth:{type:String,alias:"d",description:"Max depth",default:"3"}}}).on("tree",async s=>{let e=be(s);await aa(s.parameters.dir||e.dir,{...s.flags,dir:s.flags.dir??e.dir})});ie.command("recon","Repository reconnaissance and architecture analysis",{parameters:["<mode>","[dir]"],flags:{subPath:{type:String,description:"Subpath to focus on"}}}).on("recon",async s=>{let e=be(s);await Ca(s.parameters.mode,s.parameters.dir||e.dir,{...s.flags})});ie.command("trace","Trace execution flow for a given file/symbol",{parameters:["<file>","[symbolName]"],flags:{dir:{type:String,alias:"d",default:"."}}}).on("trace",async s=>{let e=be(s);await Sa(s.parameters.file,{...s.flags,dir:s.flags.dir??e.dir,symbolName:s.parameters.symbolName})});ie.command("sync","Deep synchronize intelligence lifecycle (Trace + Repair + Re-hydrate)",{parameters:["[dir]"],flags:{contextPivot:{type:Boolean,default:!1,description:"Opt in to suspend other-branch missions and resume current-branch missions"},mergeSentinel:{type:Boolean,default:!1,description:"Opt in to auto-complete missions from merged branches"}}}).on("sync",async s=>{let e=be(s);await Ta(s.parameters.dir||e.dir,{contextPivot:!!s.flags.contextPivot,mergeSentinel:!!s.flags.mergeSentinel})});ie.command("search-config","Search for configuration values",{parameters:["[key]"],flags:{dir:{type:String,alias:"d",default:"."},kind:{type:String,description:"Filter by config kind"}}}).on("search-config",async s=>{let e=be(s);await Ha(s.parameters.key,{...s.flags,dir:s.flags.dir??e.dir})});ie.command("search-concept","Search for files by concept/intent (Semantic)",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-concept",async s=>{let e=be(s);await Oa(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});ie.command("search-symbol","Search for specific code symbols",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-symbol",async s=>{let e=be(s);await Fa(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});ie.command("search-fuzzy",'Fuzzy search for symbols (e.g., "usc" finds "UserServiceClient")',{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-fuzzy",async s=>{let e=be(s);await Wa(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});ie.command("hooks","Manage git hooks for automatic intelligence updates",{parameters:["<action>","[path]"]}).on("hooks",async s=>{await za([s.parameters.action,s.parameters.path])});ie.command("workspace","Workspace-level mission orchestration",{parameters:["<action>","[args...]"]}).on("workspace",async s=>{await Xa([s.parameters.action,...s.parameters.args])});ie.command("mission","Mission management (start, plan, briefing, distill)",{parameters:["<action>","[args...]"]}).on("mission",async s=>{await bc([s.parameters.action,...s.parameters.args])});ie.command("inspect","Deep inspection of specific files or symbols",{parameters:["<mode>","[args...]"]}).on("inspect",async s=>{await _c([s.parameters.mode,...s.parameters.args])});ie.command("watch","Watch repo and reindex on file changes",{parameters:["[dir]"]}).on("watch",async s=>{let e=be(s);await wc(s.parameters.dir||e.dir)});ie.command("chronicle","Generate a repository-wide narrative feed (ADRs/Epics)",{parameters:["[dir]"],flags:{format:{type:String,alias:"f",description:"Output format (markdown|json)",default:"markdown"},limit:{type:Number,alias:"l",description:"Limit number of entries",default:10},offset:{type:Number,description:"Pagination offset",default:0},since:{type:String,description:"Show entries since date (YYYY-MM-DD)"},until:{type:String,description:"Show entries until date (YYYY-MM-DD)"}}}).on("chronicle",async s=>{let e=be(s);await xc(s.parameters.dir||e.dir,{...s.flags,format:s.flags.format,limit:s.flags.limit?parseInt(String(s.flags.limit),10):void 0,offset:s.flags.offset?parseInt(String(s.flags.offset),10):void 0,since:s.flags.since?Math.floor(new Date(String(s.flags.since)).getTime()/1e3):void 0,until:s.flags.until?Math.floor(new Date(String(s.flags.until)).getTime()/1e3):void 0})});ie.command("init","Initialize Liquid Shadow skills and configuration",{flags:{force:{type:Boolean,alias:"f",description:"Force overwrite existing skills and MCP server entries",default:!1},yes:{type:Boolean,alias:"y",description:"Skip interactive confirmation (unsafe)",default:!1},mcpCommand:{type:String,description:"Override MCP command used in generated client configs",default:"liquid-shadow-mcp"},mcpArgs:{type:String,description:'Optional MCP args (JSON array recommended, e.g. ["--flag","value"] or quoted string)'}}}).on("init",async s=>{let e;try{e=kc(s.flags.mcpArgs)}catch(t){let n=t instanceof Error?t.message:String(t);console.error(`Invalid --mcp-args: ${n}`),process.exit(1);return}await Cc(s.flags.force,s.flags.yes,s.flags.mcpCommand,e)});ie.command("skills","Manage Liquid Shadow reasoning skills",{parameters:["<action>"]}).on("skills",async s=>{let e=s.parameters.action;e==="update"?await Tc():(console.error(`Unknown skills action: ${e}. Available: update`),process.exit(1))});ie.command("completion","Generate shell completion script (bash or zsh)",{parameters:["<shell>"]}).on("completion",async s=>{await Sc(s.parameters.shell||"")});if(process.argv.length<=2){let s=Vi(process.cwd(),{});cs(s.dir)}else ie.parse();
+`}async function el(s=!1,e=!1,t=mr,n=[]){_e.intro("\u{1F311} Liquid Shadow: Tactical Onboarding");let i=om.homedir(),r=0,o=cm(t),a=Array.isArray(n)?n:[],c=e||await _e.confirm({message:"Deploy Autonomous Reasoning Skills? (Injects /onboard, /understand, etc.)",initialValue:!0});if(_e.isCancel(c)){_e.outro("Onboarding aborted.");return}let l=e||await _e.confirm({message:"Connect to MCP Reasoning Engines? (Claude Code, Claude Desktop, Gemini CLI, Codex)",initialValue:!0});if(_e.isCancel(l)){_e.outro("Onboarding aborted.");return}if(!c&&!l){_e.outro("No actions selected. Operational state unchanged.");return}let p=_e.spinner();p.start("Establishing intelligence assets..."),c&&(r=dr(!0)),l&&(dm(i,o,a,!0),mm(i,o,a,!0)),p.stop("Intelligence layer established."),r>0?_e.note(`Successfully deployed ${r} tactical skills.`,"Manifest"):_e.note("No new skills deployed (up to date or scope skipped).","Manifest"),_e.outro("\u{1F311} Liquid Shadow is operational.")}function dm(s,e,t,n){let i=[{name:"Claude Code",path:mn.join(s,".claude.json"),extraFields:{type:"stdio"},createIfMissing:!1},{name:"Claude Desktop",path:mn.join(s,"Library","Application Support","Claude","claude_desktop_config.json"),createIfMissing:!1},{name:"Gemini CLI",path:mn.join(s,".gemini","settings.json"),createIfMissing:!0},{name:"Antigravity IDE",path:mn.join(s,".gemini","antigravity","mcp_config.json"),createIfMissing:!1}];for(let r of i){if(!At.existsSync(r.path))if(r.createIfMissing)At.mkdirSync(mn.dirname(r.path),{recursive:!0}),At.writeFileSync(r.path,"{}");else{ft.debug(`${r.name} config not found at ${r.path}, skipping.`);continue}try{let o=JSON.parse(At.readFileSync(r.path,"utf8"));if(o.mcpServers||(o.mcpServers={}),o.mcpServers[Vt]){if(!n){ft.info(`${r.name}: ${Vt} already configured.`);continue}ft.info(`${r.name}: updating existing ${Vt} configuration.`)}o.mcpServers[Vt]={command:e,args:t,env:{},...r.extraFields??{}},At.writeFileSync(r.path,JSON.stringify(o,null,2)),ft.info(`Updated ${r.name} config at ${r.path}`)}catch(o){ft.error(`Failed to update ${r.name} config at ${r.path}: ${o}`)}}}function mm(s,e,t,n){let i=mn.join(s,".codex","config.toml");if(!At.existsSync(i)){ft.debug(`Codex config not found at ${i}, skipping.`);return}try{let r=At.readFileSync(i,"utf8"),o=`[mcp_servers.${Vt}]`,a=pm(e,t);if(r.includes(o)&&!n){ft.info(`Codex: ${Vt} already configured.`);return}let c=um(r,o,a);At.writeFileSync(i,c),ft.info(`Updated Codex config at ${i}`)}catch(r){ft.error(`Failed to update Codex config at ${i}: ${r}`)}}Nt();import{readFileSync as hm}from"node:fs";var hn={name:"@precisionutilityguild/liquid-shadow",version:"0.0.0",license:"UNLICENSED",description:"Tactical Repository Intelligence Operative - Liquid Shadow Ecosystem"};function tl(){let s=JSON.parse(hm(Le("package.json"),"utf8"));return{name:typeof s.name=="string"&&s.name.trim().length>0?s.name:hn.name,version:typeof s.version=="string"&&s.version.trim().length>0?s.version:hn.version,license:typeof s.license=="string"&&s.license.trim().length>0?s.license:hn.license,description:typeof s.description=="string"&&s.description.trim().length>0?s.description:hn.description}}function ke(s){let e=process.cwd();return ls(e,s.flags)}process.on("unhandledRejection",s=>{console.error("\x1B[31mUnhandled Rejection:\x1B[0m",s),ne().then(()=>process.exit(1))});process.on("uncaughtException",s=>{console.error("\x1B[31mUncaught Exception:\x1B[0m",s),ne().then(()=>process.exit(1))});var hr=hn;try{hr=tl()}catch(s){console.error("Failed to parse package.json, using defaults",s)}var le=fm().name("liquid-shadow").version(hr.version).description(hr.description).scriptName("liquid-shadow");le.command("index","Index the repository for AI analysis",{parameters:["[dir]"],flags:{output:{type:String,alias:"o",description:"Export to JSON file instead of indexing"},level:{type:String,alias:"l",description:"Detail level",default:"detailed"},subPath:{type:String,description:"Only process files within this subpath"},force:{type:Boolean,description:"Force re-indexing of all files",default:!1},deep:{type:Boolean,description:"Perform deep semantic indexing (headings + symbol embeddings)",default:!0}}}).on("index",async s=>{let e=ke(s),t={...s.flags,dir:s.flags.dir??e.dir,level:s.flags.level??e.level,deep:s.flags.deep??e.deep};t.deep==="false"||t.deep===!1?t.deep=!1:t.deep=!0,await Na(s.parameters.dir||e.dir,t)});le.command("status","Show current repository intelligence status",{parameters:["[dir]"]}).on("status",async s=>{let e=ke(s);await ao(s.parameters.dir||e.dir)});le.command("dashboard","Operational intelligence dashboard (TUI)",{parameters:["[dir]"]}).on("dashboard",async s=>{let e=ke(s);await vs(s.parameters.dir||e.dir)});le.command("metrics","Show performance metrics and observability data",{parameters:["[dir]"]}).on("metrics",async s=>{let e=ke(s);await go(s.parameters.dir||e.dir)});le.command("benchmark","Run performance benchmark on repository indexing",{parameters:["[dir]"]}).on("benchmark",async s=>{let e=ke(s);await Oa(s.parameters.dir||e.dir)});le.command("tree","Visualize repository structure as a tree",{parameters:["[dir]"],flags:{subPath:{type:String,description:"Subpath to visualize"},depth:{type:String,alias:"d",description:"Max depth",default:"3"}}}).on("tree",async s=>{let e=ke(s);await Aa(s.parameters.dir||e.dir,{...s.flags,dir:s.flags.dir??e.dir})});le.command("recon","Repository reconnaissance and architecture analysis",{parameters:["<mode>","[dir]"],flags:{subPath:{type:String,description:"Subpath to focus on"}}}).on("recon",async s=>{let e=ke(s);await Xa(s.parameters.mode,s.parameters.dir||e.dir,{...s.flags})});le.command("trace","Trace execution flow for a given file/symbol",{parameters:["<file>","[symbolName]"],flags:{dir:{type:String,alias:"d",default:"."}}}).on("trace",async s=>{let e=ke(s);await qa(s.parameters.file,{...s.flags,dir:s.flags.dir??e.dir,symbolName:s.parameters.symbolName})});le.command("sync","Deep synchronize intelligence lifecycle (Trace + Repair + Re-hydrate)",{parameters:["[dir]"],flags:{contextPivot:{type:Boolean,default:!1,description:"Opt in to suspend other-branch missions and resume current-branch missions"},mergeSentinel:{type:Boolean,default:!1,description:"Opt in to auto-complete missions from merged branches"}}}).on("sync",async s=>{let e=ke(s);await Ka(s.parameters.dir||e.dir,{contextPivot:!!s.flags.contextPivot,mergeSentinel:!!s.flags.mergeSentinel})});le.command("search-config","Search for configuration values",{parameters:["[key]"],flags:{dir:{type:String,alias:"d",default:"."},kind:{type:String,description:"Filter by config kind"}}}).on("search-config",async s=>{let e=ke(s);await uc(s.parameters.key,{...s.flags,dir:s.flags.dir??e.dir})});le.command("search-concept","Search for files by concept/intent (Semantic)",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-concept",async s=>{let e=ke(s);await cc(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});le.command("search-symbol","Search for specific code symbols",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-symbol",async s=>{let e=ke(s);await lc(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});le.command("search-fuzzy",'Fuzzy search for symbols (e.g., "usc" finds "UserServiceClient")',{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-fuzzy",async s=>{let e=ke(s);await pc(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});le.command("hooks","Manage git hooks for automatic intelligence updates",{parameters:["<action>","[path]"]}).on("hooks",async s=>{await dc([s.parameters.action,s.parameters.path])});le.command("workspace","Workspace-level mission orchestration",{parameters:["<action>","[args...]"]}).on("workspace",async s=>{await xc([s.parameters.action,...s.parameters.args])});le.command("mission","Mission management (start, plan, briefing, distill)",{parameters:["<action>","[args...]"]}).on("mission",async s=>{await jc([s.parameters.action,...s.parameters.args])});le.command("inspect","Deep inspection of specific files or symbols",{parameters:["<mode>","[args...]"]}).on("inspect",async s=>{await Gc([s.parameters.mode,...s.parameters.args])});le.command("watch","Watch repo and reindex on file changes",{parameters:["[dir]"]}).on("watch",async s=>{let e=ke(s);await Jc(s.parameters.dir||e.dir)});le.command("chronicle","Generate a repository-wide narrative feed (ADRs/Epics)",{parameters:["[dir]"],flags:{format:{type:String,alias:"f",description:"Output format (markdown|json)",default:"markdown"},limit:{type:Number,alias:"l",description:"Limit number of entries",default:10},offset:{type:Number,description:"Pagination offset",default:0},since:{type:String,description:"Show entries since date (YYYY-MM-DD)"},until:{type:String,description:"Show entries until date (YYYY-MM-DD)"}}}).on("chronicle",async s=>{let e=ke(s);await Yc(s.parameters.dir||e.dir,{...s.flags,format:s.flags.format,limit:s.flags.limit?parseInt(String(s.flags.limit),10):void 0,offset:s.flags.offset?parseInt(String(s.flags.offset),10):void 0,since:s.flags.since?Math.floor(new Date(String(s.flags.since)).getTime()/1e3):void 0,until:s.flags.until?Math.floor(new Date(String(s.flags.until)).getTime()/1e3):void 0})});le.command("init","Initialize Liquid Shadow skills and configuration",{flags:{force:{type:Boolean,alias:"f",description:"Force overwrite existing skills and MCP server entries",default:!1},yes:{type:Boolean,alias:"y",description:"Skip interactive confirmation (unsafe)",default:!1},mcpCommand:{type:String,description:"Override MCP command used in generated client configs",default:"liquid-shadow-mcp"},mcpArgs:{type:String,description:'Optional MCP args (JSON array recommended, e.g. ["--flag","value"] or quoted string)'}}}).on("init",async s=>{let e;try{e=Xc(s.flags.mcpArgs)}catch(t){let n=t instanceof Error?t.message:String(t);console.error(`Invalid --mcp-args: ${n}`),process.exit(1);return}await el(s.flags.force,s.flags.yes,s.flags.mcpCommand,e)});le.command("skills","Manage Liquid Shadow reasoning skills",{parameters:["<action>"]}).on("skills",async s=>{let e=s.parameters.action;e==="update"?await Qc():(console.error(`Unknown skills action: ${e}. Available: update`),process.exit(1))});le.command("completion","Generate shell completion script (bash or zsh)",{parameters:["<shell>"]}).on("completion",async s=>{await Vc(s.parameters.shell||"")});if(process.argv.length<=2){let s=ls(process.cwd(),{});vs(s.dir)}else le.parse();