@platforma-open/milaboratories.repertoire-diversity-2.model 1.5.4 → 1.5.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/dist/index.js.map CHANGED
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1
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type { Metric, MetricUI } from './index';\n\nexport const convertMetricsUiToArgs = (metrics: MetricUI[]): Metric[] => {\n return metrics.map((metric): Metric => {\n return {\n type: metric.type,\n downsampling: metric.downsampling,\n };\n });\n};\n","import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n blockTitle: string;\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: 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(pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done(2);\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
1
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Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel: '',\n customBlockLabel: '',\n })\n\n .withUiState<UiState>({\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined\n && ctx.args.metrics.every((metric) => metric.type !== undefined))\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ], { includeNativeLabel: true }),\n )\n\n .outputWithStatus('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .outputWithStatus('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title(() => 'Repertoire Diversity')\n\n .subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n 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