@platforma-open/milaboratories.repertoire-diversity-2.model 1.5.3 → 1.5.5

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Files changed (25) hide show
  1. package/.turbo/turbo-build.log +13 -28
  2. package/.turbo/turbo-lint.log +5 -0
  3. package/.turbo/turbo-type-check.log +6 -0
  4. package/CHANGELOG.md +12 -0
  5. package/dist/bundle.js +8167 -7176
  6. package/dist/bundle.js.map +1 -1
  7. package/dist/converters.cjs +13 -0
  8. package/dist/converters.cjs.map +1 -0
  9. package/dist/converters.d.ts +3 -0
  10. package/dist/converters.d.ts.map +1 -0
  11. package/dist/converters.js +11 -0
  12. package/dist/converters.js.map +1 -0
  13. package/dist/index.cjs +104 -110
  14. package/dist/index.cjs.map +1 -1
  15. package/dist/index.d.ts +35 -29
  16. package/dist/index.d.ts.map +1 -0
  17. package/dist/index.js +104 -110
  18. package/dist/index.js.map +1 -1
  19. package/dist/model.json +1 -1
  20. package/package.json +28 -28
  21. package/src/index.ts +2 -2
  22. package/tsconfig.json +1 -12
  23. package/vitest.config.mts +9 -0
  24. package/dist/index.d.cts +0 -76
  25. package/vite.config.mts +0 -20
package/dist/index.js.map CHANGED
@@ -1 +1 @@
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type { Metric, MetricUI } from './index';\n\nexport const convertMetricsUiToArgs = (metrics: MetricUI[]): Metric[] => {\n return metrics.map((metric): Metric => {\n return {\n type: metric.type,\n downsampling: metric.downsampling,\n };\n });\n};\n","import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n blockTitle: string;\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined\n && ctx.args.metrics.every((metric) => metric.type !== undefined))\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done(2);\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
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