@platforma-open/milaboratories.repertoire-diversity-2.model 1.1.2

package/src/index.ts

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+import type { GraphMakerState } from '@milaboratories/graph-maker';
+import type { InferOutputsType, PColumnSpec, PlDataTableState, PlRef } from '@platforma-sdk/model';
+import { BlockModel, createPFrameForGraphs, createPlDataTable, isPColumnSpec } from '@platforma-sdk/model';
+
+export type DiversityType = 'chao1' | 'd50' | 'efronThisted' |
+  'observed' | 'shannonWienerIndex' | 'shannonWiener' |
+  'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
+
+export type Metric = {
+  type: DiversityType | undefined;
+  downsampling: {
+    type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;
+    valueChooser?: 'min' | 'fixed' | 'max' | 'auto';
+    n?: number;
+  };
+};
+
+export type BlockArgs = {
+  abundanceRef?: PlRef;
+  metrics: Metric[];
+};
+
+export type UiState = {
+  blockTitle: string;
+  tableState?: PlDataTableState;
+  graphState: GraphMakerState;
+};
+
+function isNumericType(c: PColumnSpec): boolean {
+  return c.valueType === 'Double' || c.valueType === 'Int' || c.valueType === 'Float' || c.valueType === 'Long';
+}
+
+export const model = BlockModel.create()
+
+  .withArgs<BlockArgs>({
+    metrics: [
+      {
+        type: 'observed',
+        downsampling: {
+          type: 'hypergeometric',
+          valueChooser: 'auto',
+        },
+      },
+      {
+        type: 'shannonWiener',
+        downsampling: {
+          type: 'hypergeometric',
+          valueChooser: 'auto',
+        },
+      },
+      {
+        type: 'chao1',
+        downsampling: {
+          type: 'hypergeometric',
+          valueChooser: 'auto',
+        },
+      },
+      {
+        type: 'gini',
+        downsampling: {
+          type: 'hypergeometric',
+          valueChooser: 'auto',
+        },
+      },
+      {
+        type: 'd50',
+        downsampling: {
+          type: 'hypergeometric',
+          valueChooser: 'auto',
+        },
+      },
+    ],
+  })
+
+  .withUiState<UiState>({
+    blockTitle: 'Repertoire Diversity',
+    graphState: {
+      title: 'Repertoire Diversity',
+      template: 'bar',
+      currentTab: null,
+    },
+
+    tableState: {
+      gridState: {},
+      pTableParams: {
+        sorting: [],
+        filters: [],
+      },
+    },
+  })
+
+  .argsValid((ctx) => ctx.args.abundanceRef !== undefined)
+
+  .output('abundanceOptions', (ctx) =>
+    ctx.resultPool.getOptions((c) =>
+      isPColumnSpec(c) && isNumericType(c)
+      && c.annotations?.['pl7.app/isAbundance'] === 'true'
+      && c.annotations?.['pl7.app/abundance/normalized'] === 'false',
+    ))
+
+  .output('pt', (ctx) => {
+    const pCols = ctx.outputs?.resolve('pf')?.getPColumns();
+    if (pCols === undefined) {
+      return undefined;
+    }
+
+    return createPlDataTable(ctx, pCols, ctx.uiState?.tableState);
+  })
+
+  .output('pf', (ctx) => {
+    const pCols = ctx.outputs?.resolve('pf')?.getPColumns();
+    if (pCols === undefined) {
+      return undefined;
+    }
+
+    return createPFrameForGraphs(ctx, pCols);
+  })
+
+  .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)
+
+  .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')
+
+  .sections((_) => [
+    { type: 'link', href: '/', label: 'Main' },
+    { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },
+  ])
+
+  .done();
+
+export type BlockOutputs = InferOutputsType<typeof model>;

package/tsconfig.json

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+{
+  "compilerOptions": {
+    "target": "es2022",
+    "module": "commonjs",
+    "moduleResolution": "node",
+    "esModuleInterop": true,
+    "strict": true,
+    "outDir": "./dist",
+    "rootDir": "./src",
+    "sourceMap": true,
+    "declaration": true
+  },
+  "types": [],
+  "include": ["src/**/*"],
+  "exclude": ["node_modules", "dist"]
+}

package/vite.config.mts

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+import { defineConfig } from 'vite';
+
+export default defineConfig({
+  build: {
+    emptyOutDir: false,
+    lib: {
+      entry: 'src/index.ts',
+      name: 'model',
+      fileName: (format) => `my-lib.${format}.js`
+    },
+    minify: false,
+    sourcemap: true,
+    rollupOptions: {
+      output: {
+        format: 'iife',
+        entryFileNames: 'bundle.js'
+      }
+    }
+  }
+});