@platforma-open/milaboratories.repertoire-diversity-2.model 1.1.2

package/dist/index.cjs

@@ -0,0 +1,82 @@
+'use strict';
+
+var model$1 = require('@platforma-sdk/model');
+
+// src/index.ts
+function isNumericType(c) {
+  return c.valueType === "Double" || c.valueType === "Int" || c.valueType === "Float" || c.valueType === "Long";
+}
+var model = model$1.BlockModel.create().withArgs({
+  metrics: [
+    {
+      type: "observed",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "shannonWiener",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "chao1",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "gini",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "d50",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    }
+  ]
+}).withUiState({
+  blockTitle: "Repertoire Diversity",
+  graphState: {
+    title: "Repertoire Diversity",
+    template: "bar",
+    currentTab: null
+  },
+  tableState: {
+    gridState: {},
+    pTableParams: {
+      sorting: [],
+      filters: []
+    }
+  }
+}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output("abundanceOptions", (ctx) => ctx.resultPool.getOptions(
+  (c) => model$1.isPColumnSpec(c) && isNumericType(c) && c.annotations?.["pl7.app/isAbundance"] === "true" && c.annotations?.["pl7.app/abundance/normalized"] === "false"
+)).output("pt", (ctx) => {
+  const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
+  if (pCols === void 0) {
+    return void 0;
+  }
+  return model$1.createPlDataTable(ctx, pCols, ctx.uiState?.tableState);
+}).output("pf", (ctx) => {
+  const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
+  if (pCols === void 0) {
+    return void 0;
+  }
+  return model$1.createPFrameForGraphs(ctx, pCols);
+}).output("isRunning", (ctx) => ctx.outputs?.getIsReadyOrError() === false).title((ctx) => ctx.uiState?.blockTitle ?? "Repertoire Diversity").sections((_) => [
+  { type: "link", href: "/", label: "Main" },
+  { type: "link", href: "/diversityGraph", label: "Diversity Graph" }
+]).done();
+
+exports.model = model;
+//# sourceMappingURL=index.cjs.map
+//# sourceMappingURL=index.cjs.map

package/dist/index.cjs.map

@@ -0,0 +1 @@
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type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnSpec, PlDataTableState, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTable, isPColumnSpec } from '@platforma-sdk/model';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n  'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n  'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n  type: DiversityType | undefined;\n  downsampling: {\n    type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n    valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n    n?: number;\n  };\n};\n\nexport type BlockArgs = {\n  abundanceRef?: PlRef;\n  metrics: Metric[];\n};\n\nexport type UiState = {\n  blockTitle: string;\n  tableState?: PlDataTableState;\n  graphState: GraphMakerState;\n};\n\nfunction isNumericType(c: PColumnSpec): boolean {\n  return c.valueType === 'Double' || c.valueType === 'Int' || c.valueType === 'Float' || c.valueType === 'Long';\n}\n\nexport const model = BlockModel.create()\n\n  .withArgs<BlockArgs>({\n    metrics: [\n      {\n        type: 'observed',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'shannonWiener',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'chao1',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'gini',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'd50',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n    ],\n  })\n\n  .withUiState<UiState>({\n    blockTitle: 'Repertoire Diversity',\n    graphState: {\n      title: 'Repertoire Diversity',\n      template: 'bar',\n      currentTab: null,\n    },\n\n    tableState: {\n      gridState: {},\n      pTableParams: {\n        sorting: [],\n        filters: [],\n      },\n    },\n  })\n\n  .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n  .output('abundanceOptions', (ctx) =>\n    ctx.resultPool.getOptions((c) =>\n      isPColumnSpec(c) && isNumericType(c)\n      && c.annotations?.['pl7.app/isAbundance'] === 'true'\n      && c.annotations?.['pl7.app/abundance/normalized'] === 'false',\n    ))\n\n  .output('pt', (ctx) => {\n    const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n    if (pCols === undefined) {\n      return undefined;\n    }\n\n    return createPlDataTable(ctx, pCols, ctx.uiState?.tableState);\n  })\n\n  .output('pf', (ctx) => {\n    const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n    if (pCols === undefined) {\n      return undefined;\n    }\n\n    return createPFrameForGraphs(ctx, pCols);\n  })\n\n  .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n  .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n  .sections((_) => [\n    { type: 'link', href: '/', label: 'Main' },\n    { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n  ])\n\n  .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}

package/dist/index.d.cts

@@ -0,0 +1,38 @@
+import * as _platforma_sdk_model from '@platforma-sdk/model';
+import { PlRef, PlDataTableState, InferOutputsType } from '@platforma-sdk/model';
+import { GraphMakerState } from '@milaboratories/graph-maker';
+
+type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
+type Metric = {
+    type: DiversityType | undefined;
+    downsampling: {
+        type?: 'none' | 'top' | 'cumtop' | 'hypergeometric';
+        valueChooser?: 'min' | 'fixed' | 'max' | 'auto';
+        n?: number;
+    };
+};
+type BlockArgs = {
+    abundanceRef?: PlRef;
+    metrics: Metric[];
+};
+type UiState = {
+    blockTitle: string;
+    tableState?: PlDataTableState;
+    graphState: GraphMakerState;
+};
+declare const model: _platforma_sdk_model.Platforma<BlockArgs, {
+    abundanceOptions: _platforma_sdk_model.ValueOrErrors<{
+        readonly ref: {
+            readonly __isRef: true;
+            readonly blockId: string;
+            readonly name: string;
+        };
+        readonly label: string;
+    }[]>;
+    pt: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PTableHandle | undefined>;
+    pf: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PFrameHandle | undefined>;
+    isRunning: _platforma_sdk_model.ValueOrErrors<boolean>;
+}, UiState, "/" | "/diversityGraph">;
+type BlockOutputs = InferOutputsType<typeof model>;
+
+export { type BlockArgs, type BlockOutputs, type DiversityType, type Metric, type UiState, model };

package/dist/index.d.ts

@@ -0,0 +1,38 @@
+import * as _platforma_sdk_model from '@platforma-sdk/model';
+import { PlRef, PlDataTableState, InferOutputsType } from '@platforma-sdk/model';
+import { GraphMakerState } from '@milaboratories/graph-maker';
+
+type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
+type Metric = {
+    type: DiversityType | undefined;
+    downsampling: {
+        type?: 'none' | 'top' | 'cumtop' | 'hypergeometric';
+        valueChooser?: 'min' | 'fixed' | 'max' | 'auto';
+        n?: number;
+    };
+};
+type BlockArgs = {
+    abundanceRef?: PlRef;
+    metrics: Metric[];
+};
+type UiState = {
+    blockTitle: string;
+    tableState?: PlDataTableState;
+    graphState: GraphMakerState;
+};
+declare const model: _platforma_sdk_model.Platforma<BlockArgs, {
+    abundanceOptions: _platforma_sdk_model.ValueOrErrors<{
+        readonly ref: {
+            readonly __isRef: true;
+            readonly blockId: string;
+            readonly name: string;
+        };
+        readonly label: string;
+    }[]>;
+    pt: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PTableHandle | undefined>;
+    pf: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PFrameHandle | undefined>;
+    isRunning: _platforma_sdk_model.ValueOrErrors<boolean>;
+}, UiState, "/" | "/diversityGraph">;
+type BlockOutputs = InferOutputsType<typeof model>;
+
+export { type BlockArgs, type BlockOutputs, type DiversityType, type Metric, type UiState, model };

package/dist/index.js

@@ -0,0 +1,80 @@
+import { BlockModel, isPColumnSpec, createPlDataTable, createPFrameForGraphs } from '@platforma-sdk/model';
+
+// src/index.ts
+function isNumericType(c) {
+  return c.valueType === "Double" || c.valueType === "Int" || c.valueType === "Float" || c.valueType === "Long";
+}
+var model = BlockModel.create().withArgs({
+  metrics: [
+    {
+      type: "observed",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "shannonWiener",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "chao1",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "gini",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    },
+    {
+      type: "d50",
+      downsampling: {
+        type: "hypergeometric",
+        valueChooser: "auto"
+      }
+    }
+  ]
+}).withUiState({
+  blockTitle: "Repertoire Diversity",
+  graphState: {
+    title: "Repertoire Diversity",
+    template: "bar",
+    currentTab: null
+  },
+  tableState: {
+    gridState: {},
+    pTableParams: {
+      sorting: [],
+      filters: []
+    }
+  }
+}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output("abundanceOptions", (ctx) => ctx.resultPool.getOptions(
+  (c) => isPColumnSpec(c) && isNumericType(c) && c.annotations?.["pl7.app/isAbundance"] === "true" && c.annotations?.["pl7.app/abundance/normalized"] === "false"
+)).output("pt", (ctx) => {
+  const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
+  if (pCols === void 0) {
+    return void 0;
+  }
+  return createPlDataTable(ctx, pCols, ctx.uiState?.tableState);
+}).output("pf", (ctx) => {
+  const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
+  if (pCols === void 0) {
+    return void 0;
+  }
+  return createPFrameForGraphs(ctx, pCols);
+}).output("isRunning", (ctx) => ctx.outputs?.getIsReadyOrError() === false).title((ctx) => ctx.uiState?.blockTitle ?? "Repertoire Diversity").sections((_) => [
+  { type: "link", href: "/", label: "Main" },
+  { type: "link", href: "/diversityGraph", label: "Diversity Graph" }
+]).done();
+
+export { model };
+//# sourceMappingURL=index.js.map
+//# sourceMappingURL=index.js.map

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type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnSpec, PlDataTableState, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTable, isPColumnSpec } from '@platforma-sdk/model';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n  'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n  'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n  type: DiversityType | undefined;\n  downsampling: {\n    type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n    valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n    n?: number;\n  };\n};\n\nexport type BlockArgs = {\n  abundanceRef?: PlRef;\n  metrics: Metric[];\n};\n\nexport type UiState = {\n  blockTitle: string;\n  tableState?: PlDataTableState;\n  graphState: GraphMakerState;\n};\n\nfunction isNumericType(c: PColumnSpec): boolean {\n  return c.valueType === 'Double' || c.valueType === 'Int' || c.valueType === 'Float' || c.valueType === 'Long';\n}\n\nexport const model = BlockModel.create()\n\n  .withArgs<BlockArgs>({\n    metrics: [\n      {\n        type: 'observed',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'shannonWiener',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'chao1',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'gini',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n      {\n        type: 'd50',\n        downsampling: {\n          type: 'hypergeometric',\n          valueChooser: 'auto',\n        },\n      },\n    ],\n  })\n\n  .withUiState<UiState>({\n    blockTitle: 'Repertoire Diversity',\n    graphState: {\n      title: 'Repertoire Diversity',\n      template: 'bar',\n      currentTab: null,\n    },\n\n    tableState: {\n      gridState: {},\n      pTableParams: {\n        sorting: [],\n        filters: [],\n      },\n    },\n  })\n\n  .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n  .output('abundanceOptions', (ctx) =>\n    ctx.resultPool.getOptions((c) =>\n      isPColumnSpec(c) && isNumericType(c)\n      && c.annotations?.['pl7.app/isAbundance'] === 'true'\n      && c.annotations?.['pl7.app/abundance/normalized'] === 'false',\n    ))\n\n  .output('pt', (ctx) => {\n    const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n    if (pCols === undefined) {\n      return undefined;\n    }\n\n    return createPlDataTable(ctx, pCols, ctx.uiState?.tableState);\n  })\n\n  .output('pf', (ctx) => {\n    const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n    if (pCols === undefined) {\n      return undefined;\n    }\n\n    return createPFrameForGraphs(ctx, pCols);\n  })\n\n  .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n  .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n  .sections((_) => [\n    { type: 'link', href: '/', label: 'Main' },\n    { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n  ])\n\n  .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}