@pga-ai/core 0.4.0

package/dist/gene-bank/GeneMatcher.d.ts

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+import { z } from 'zod';
+import { CognitiveGene, GeneType } from './CognitiveGene';
+export declare const GeneMatchConfigSchema: z.ZodObject<{
+    minFitness: z.ZodDefault<z.ZodNumber>;
+    minMatchScore: z.ZodDefault<z.ZodNumber>;
+    fitnessWeight: z.ZodDefault<z.ZodNumber>;
+    domainWeight: z.ZodDefault<z.ZodNumber>;
+    typeWeight: z.ZodDefault<z.ZodNumber>;
+    adoptionWeight: z.ZodDefault<z.ZodNumber>;
+    maxResults: z.ZodDefault<z.ZodNumber>;
+    domainBoost: z.ZodDefault<z.ZodNumber>;
+    adoptionBoost: z.ZodDefault<z.ZodNumber>;
+}, "strip", z.ZodTypeAny, {
+    minFitness: number;
+    minMatchScore: number;
+    fitnessWeight: number;
+    domainWeight: number;
+    typeWeight: number;
+    adoptionWeight: number;
+    maxResults: number;
+    domainBoost: number;
+    adoptionBoost: number;
+}, {
+    minFitness?: number | undefined;
+    minMatchScore?: number | undefined;
+    fitnessWeight?: number | undefined;
+    domainWeight?: number | undefined;
+    typeWeight?: number | undefined;
+    adoptionWeight?: number | undefined;
+    maxResults?: number | undefined;
+    domainBoost?: number | undefined;
+    adoptionBoost?: number | undefined;
+}>;
+export type GeneMatchConfig = z.infer<typeof GeneMatchConfigSchema>;
+export interface MatchContext {
+    task: string;
+    domain: string;
+    preferredTypes?: GeneType[];
+    requiredCapabilities?: string[];
+    tags?: string[];
+    currentContext?: string;
+}
+export interface GeneMatchResult {
+    gene: CognitiveGene;
+    matchScore: number;
+    scoreBreakdown: {
+        fitnessScore: number;
+        domainScore: number;
+        typeScore: number;
+        adoptionScore: number;
+        semanticScore?: number;
+    };
+    reason: string;
+    confidence: number;
+}
+export declare class GeneMatcher {
+    private config;
+    constructor(config?: Partial<GeneMatchConfig>);
+    findMatches(context: MatchContext, candidates: CognitiveGene[]): Promise<GeneMatchResult[]>;
+    findBestMatch(context: MatchContext, candidates: CognitiveGene[]): Promise<GeneMatchResult | null>;
+    findByDomain(domain: string, candidates: CognitiveGene[]): Promise<GeneMatchResult[]>;
+    findByType(type: GeneType, candidates: CognitiveGene[]): Promise<GeneMatchResult[]>;
+    private scoreGene;
+    private scoreDomain;
+    private scoreType;
+    private scoreAdoption;
+    private scoreSemanticMatch;
+    private buildMatchReason;
+    private calculateConfidence;
+    checkCompatibility(gene: CognitiveGene, agentCapabilities: string[]): {
+        compatible: boolean;
+        missingCapabilities: string[];
+        reason: string;
+    };
+    checkApplicability(gene: CognitiveGene, currentContext: string): {
+        applicable: boolean;
+        reason: string;
+    };
+    getConfig(): GeneMatchConfig;
+    updateConfig(updates: Partial<GeneMatchConfig>): void;
+}
+//# sourceMappingURL=GeneMatcher.d.ts.map

package/dist/gene-bank/GeneMatcher.d.ts.map

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package/dist/gene-bank/GeneMatcher.js

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+import { z } from 'zod';
+export const GeneMatchConfigSchema = z.object({
+    minFitness: z.number().min(0).max(1).default(0.7),
+    minMatchScore: z.number().min(0).max(1).default(0.5),
+    fitnessWeight: z.number().min(0).max(1).default(0.4),
+    domainWeight: z.number().min(0).max(1).default(0.3),
+    typeWeight: z.number().min(0).max(1).default(0.2),
+    adoptionWeight: z.number().min(0).max(1).default(0.1),
+    maxResults: z.number().int().min(1).default(10),
+    domainBoost: z.number().min(1).default(1.5),
+    adoptionBoost: z.number().min(1).default(1.2),
+});
+export class GeneMatcher {
+    config;
+    constructor(config) {
+        this.config = GeneMatchConfigSchema.parse(config || {});
+    }
+    async findMatches(context, candidates) {
+        const fitGenes = candidates.filter(gene => gene.fitness.overallFitness >= this.config.minFitness);
+        const scoredGenes = [];
+        for (const gene of fitGenes) {
+            const matchResult = this.scoreGene(gene, context);
+            if (matchResult.matchScore >= this.config.minMatchScore) {
+                scoredGenes.push(matchResult);
+            }
+        }
+        scoredGenes.sort((a, b) => b.matchScore - a.matchScore);
+        return scoredGenes.slice(0, this.config.maxResults);
+    }
+    async findBestMatch(context, candidates) {
+        const matches = await this.findMatches(context, candidates);
+        return matches.length > 0 ? matches[0] : null;
+    }
+    async findByDomain(domain, candidates) {
+        return this.findMatches({ task: '', domain }, candidates);
+    }
+    async findByType(type, candidates) {
+        return this.findMatches({ task: '', domain: '', preferredTypes: [type] }, candidates);
+    }
+    scoreGene(gene, context) {
+        const fitnessScore = gene.fitness.overallFitness;
+        const domainScore = this.scoreDomain(gene, context);
+        const typeScore = this.scoreType(gene, context);
+        const adoptionScore = this.scoreAdoption(gene);
+        const semanticScore = context.currentContext
+            ? this.scoreSemanticMatch(gene, context)
+            : 0;
+        let weightedScore = fitnessScore * this.config.fitnessWeight +
+            domainScore * this.config.domainWeight +
+            typeScore * this.config.typeWeight +
+            adoptionScore * this.config.adoptionWeight;
+        if (domainScore > 0.8) {
+            weightedScore *= this.config.domainBoost;
+        }
+        if (gene.fitness.adoptionCount > 10) {
+            weightedScore *= this.config.adoptionBoost;
+        }
+        const matchScore = Math.min(1, weightedScore);
+        const reason = this.buildMatchReason(gene, context, {
+            fitnessScore,
+            domainScore,
+            typeScore,
+            adoptionScore,
+            semanticScore,
+        });
+        const confidence = this.calculateConfidence({
+            fitnessScore,
+            domainScore,
+            typeScore,
+            adoptionScore,
+            semanticScore,
+        });
+        return {
+            gene,
+            matchScore,
+            scoreBreakdown: {
+                fitnessScore,
+                domainScore,
+                typeScore,
+                adoptionScore,
+                semanticScore,
+            },
+            reason,
+            confidence,
+        };
+    }
+    scoreDomain(gene, context) {
+        if (gene.domain.toLowerCase() === context.domain.toLowerCase()) {
+            return 1.0;
+        }
+        if (gene.domain.toLowerCase().includes(context.domain.toLowerCase()) ||
+            context.domain.toLowerCase().includes(gene.domain.toLowerCase())) {
+            return 0.7;
+        }
+        if (context.tags && gene.tags.some(tag => context.tags.includes(tag))) {
+            return 0.5;
+        }
+        return 0.1;
+    }
+    scoreType(gene, context) {
+        if (!context.preferredTypes || context.preferredTypes.length === 0) {
+            return 0.5;
+        }
+        if (context.preferredTypes.includes(gene.type)) {
+            return 1.0;
+        }
+        return 0.0;
+    }
+    scoreAdoption(gene) {
+        const count = gene.fitness.adoptionCount;
+        const performance = gene.fitness.adoptionPerformance ?? 0.5;
+        const countScore = Math.min(1, count / 20);
+        const performanceScore = performance;
+        return (countScore + performanceScore) / 2;
+    }
+    scoreSemanticMatch(gene, context) {
+        if (!context.currentContext)
+            return 0;
+        const contextLower = context.currentContext.toLowerCase();
+        const instruction = gene.content.instruction.toLowerCase();
+        const description = gene.description.toLowerCase();
+        const terms = contextLower.split(/\s+/).filter(t => t.length > 3);
+        const instructionMatches = terms.filter(t => instruction.includes(t) || description.includes(t)).length;
+        return Math.min(1, instructionMatches / Math.max(1, terms.length));
+    }
+    buildMatchReason(gene, _context, scores) {
+        const reasons = [];
+        if (scores.fitnessScore >= 0.8) {
+            reasons.push(`high fitness (${(scores.fitnessScore * 100).toFixed(0)}%)`);
+        }
+        if (scores.domainScore >= 0.9) {
+            reasons.push(`exact domain match (${gene.domain})`);
+        }
+        else if (scores.domainScore >= 0.6) {
+            reasons.push(`similar domain (${gene.domain})`);
+        }
+        if (scores.typeScore >= 0.9) {
+            reasons.push(`preferred type (${gene.type})`);
+        }
+        if (gene.fitness.adoptionCount > 5) {
+            reasons.push(`proven adoption (${gene.fitness.adoptionCount} times)`);
+        }
+        if (scores.semanticScore && scores.semanticScore >= 0.6) {
+            reasons.push('semantic match with context');
+        }
+        return reasons.length > 0
+            ? `Match: ${reasons.join(', ')}`
+            : 'General match based on fitness';
+    }
+    calculateConfidence(scores) {
+        const weights = {
+            fitness: 0.3,
+            domain: 0.3,
+            type: 0.2,
+            adoption: 0.1,
+            semantic: 0.1,
+        };
+        const confidence = scores.fitnessScore * weights.fitness +
+            scores.domainScore * weights.domain +
+            scores.typeScore * weights.type +
+            scores.adoptionScore * weights.adoption +
+            (scores.semanticScore ?? 0) * weights.semantic;
+        return Math.min(1, confidence);
+    }
+    checkCompatibility(gene, agentCapabilities) {
+        const required = gene.content.requiredCapabilities || [];
+        const missing = required.filter(cap => !agentCapabilities.includes(cap));
+        if (missing.length === 0) {
+            return {
+                compatible: true,
+                missingCapabilities: [],
+                reason: 'All required capabilities available',
+            };
+        }
+        return {
+            compatible: false,
+            missingCapabilities: missing,
+            reason: `Missing capabilities: ${missing.join(', ')}`,
+        };
+    }
+    checkApplicability(gene, currentContext) {
+        const applicable = gene.content.applicableContexts || [];
+        const contraindications = gene.content.contraindications || [];
+        const hasContraindication = contraindications.some(contra => currentContext.toLowerCase().includes(contra.toLowerCase()));
+        if (hasContraindication) {
+            return {
+                applicable: false,
+                reason: 'Context matches contraindication',
+            };
+        }
+        if (applicable.length === 0) {
+            return {
+                applicable: true,
+                reason: 'Generally applicable',
+            };
+        }
+        const isApplicable = applicable.some(ctx => currentContext.toLowerCase().includes(ctx.toLowerCase()));
+        return {
+            applicable: isApplicable,
+            reason: isApplicable
+                ? 'Context matches applicable contexts'
+                : 'Context does not match applicable contexts',
+        };
+    }
+    getConfig() {
+        return { ...this.config };
+    }
+    updateConfig(updates) {
+        this.config = GeneMatchConfigSchema.parse({
+            ...this.config,
+            ...updates,
+        });
+    }
+}
+//# sourceMappingURL=GeneMatcher.js.map

package/dist/gene-bank/GeneMatcher.js.map

@@ -0,0 +1 @@
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package/dist/gene-bank/PGAIntegration.d.ts

@@ -0,0 +1,53 @@
+import type { CognitiveGene } from './CognitiveGene';
+import { GeneBank } from './GeneBank';
+import type { GeneStorageAdapter } from './GeneBank';
+import type { LLMAdapter } from '../interfaces/LLMAdapter';
+import type { MetricsCollector } from '../monitoring/MetricsCollector';
+type Genome = any;
+type MutationProposal = any;
+export interface PGAGeneBankConfig {
+    autoExtract?: boolean;
+    autoAdopt?: boolean;
+    minFitnessForExtraction?: number;
+    minFitnessGainForExtraction?: number;
+    enableTHK?: boolean;
+    storage: GeneStorageAdapter;
+    metricsCollector?: MetricsCollector;
+}
+export declare class PGAGeneBankIntegration {
+    private llm;
+    private config;
+    private tenantId;
+    private geneBank;
+    private geneExtractor;
+    private geneAdopters;
+    constructor(llm: LLMAdapter, config: PGAGeneBankConfig, tenantId: string);
+    onMutationPromoted(genome: Genome, mutation: MutationProposal, oldFitness: number, newFitness: number): Promise<CognitiveGene | null>;
+    onTaskStart(genome: Genome, taskDescription: string, domain?: string): Promise<CognitiveGene[]>;
+    onTaskComplete(genome: Genome, taskSuccess: boolean, fitness: number): Promise<void>;
+    getEnhancedPrompt(genome: Genome, basePrompt: string): Promise<string>;
+    getGeneBank(): GeneBank;
+    getStats(): Promise<{
+        geneBank: import("./GeneBank").GeneBankStats;
+        adoptions: {
+            genomeId: string;
+            adoptedGenes: number;
+            config: {
+                agentId: string;
+                maxConcurrentAdoptions: number;
+                requireSandboxTest: boolean;
+                autoAdopt: boolean;
+                autoAdoptMinConfidence: number;
+                trackPerformance: boolean;
+                performanceWindowDays: number;
+            };
+        }[];
+    }>;
+    private extractPromptFromGenome;
+    private extractTaskContext;
+    private inferDomain;
+    private convertFitnessMetrics;
+    private generateTestCasesForTask;
+}
+export {};
+//# sourceMappingURL=PGAIntegration.d.ts.map

package/dist/gene-bank/PGAIntegration.d.ts.map

@@ -0,0 +1 @@
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package/dist/gene-bank/PGAIntegration.js

@@ -0,0 +1,139 @@
+import { GeneBank } from './GeneBank';
+import { GeneExtractor } from './GeneExtractor';
+import { GeneAdopter } from './GeneAdopter';
+export class PGAGeneBankIntegration {
+    llm;
+    config;
+    tenantId;
+    geneBank;
+    geneExtractor;
+    geneAdopters = new Map();
+    constructor(llm, config, tenantId) {
+        this.llm = llm;
+        this.config = config;
+        this.tenantId = tenantId;
+        this.geneBank = new GeneBank(config.storage, {
+            tenantId,
+            agentId: 'pga_system',
+            enableTHK: config.enableTHK ?? true,
+            minFitnessThreshold: config.minFitnessForExtraction ?? 0.7,
+        }, config.metricsCollector);
+        this.geneExtractor = new GeneExtractor(llm, {
+            minFitnessThreshold: config.minFitnessForExtraction ?? 0.7,
+            minFitnessGain: config.minFitnessGainForExtraction ?? 0.1,
+            autoExtract: config.autoExtract ?? true,
+        }, config.metricsCollector);
+    }
+    async onMutationPromoted(genome, mutation, oldFitness, newFitness) {
+        if (!this.config.autoExtract) {
+            return null;
+        }
+        const mutationContext = {
+            mutationId: mutation.id || `mut_${Date.now()}`,
+            originalPrompt: this.extractPromptFromGenome(genome, 'before'),
+            mutatedPrompt: this.extractPromptFromGenome(genome, 'after'),
+            parentFitness: oldFitness,
+            mutatedFitness: newFitness,
+            taskContext: this.extractTaskContext(genome),
+            domain: this.inferDomain(genome),
+            metrics: this.convertFitnessMetrics(mutation.fitnessMetrics),
+        };
+        const tenantInfo = {
+            tenantId: this.tenantId,
+            createdBy: genome.id || 'unknown',
+            scope: 'tenant',
+            verified: false,
+        };
+        const extractionResult = await this.geneExtractor.extractGene(mutationContext, tenantInfo);
+        if (extractionResult.success && extractionResult.gene) {
+            await this.geneBank.storeGene(extractionResult.gene);
+            return extractionResult.gene;
+        }
+        return null;
+    }
+    async onTaskStart(genome, taskDescription, domain) {
+        if (!this.config.autoAdopt) {
+            return [];
+        }
+        let adopter = this.geneAdopters.get(genome.id);
+        if (!adopter) {
+            adopter = new GeneAdopter(this.geneBank, this.llm, {
+                agentId: genome.id,
+                autoAdopt: true,
+                requireSandboxTest: true,
+            }, this.config.metricsCollector);
+            this.geneAdopters.set(genome.id, adopter);
+        }
+        const matchContext = {
+            task: taskDescription,
+            domain: domain || this.inferDomain(genome),
+        };
+        const testCases = this.generateTestCasesForTask(taskDescription);
+        const adoptionResults = await adopter.autoAdoptForTask(matchContext, testCases);
+        const adoptedGenes = [];
+        for (const result of adoptionResults) {
+            if (result.success) {
+                const gene = await this.geneBank.getGene(result.geneId);
+                if (gene) {
+                    adoptedGenes.push(gene);
+                }
+            }
+        }
+        return adoptedGenes;
+    }
+    async onTaskComplete(genome, taskSuccess, fitness) {
+        const adopter = this.geneAdopters.get(genome.id);
+        if (!adopter) {
+            return;
+        }
+        const adoptedGenes = adopter.getAdoptedGenes();
+        for (const geneStatus of adoptedGenes) {
+            adopter.updateGenePerformance(geneStatus.geneId, taskSuccess, fitness);
+        }
+    }
+    async getEnhancedPrompt(genome, basePrompt) {
+        const adopter = this.geneAdopters.get(genome.id);
+        if (!adopter) {
+            return basePrompt;
+        }
+        return adopter.buildEnhancedPrompt(basePrompt);
+    }
+    getGeneBank() {
+        return this.geneBank;
+    }
+    async getStats() {
+        const geneBankStats = await this.geneBank.getStats();
+        const adoptionStats = Array.from(this.geneAdopters.entries()).map(([genomeId, adopter]) => ({
+            genomeId,
+            adoptedGenes: adopter.getAdoptedGenes().length,
+            config: adopter.getConfig(),
+        }));
+        return {
+            geneBank: geneBankStats,
+            adoptions: adoptionStats,
+        };
+    }
+    extractPromptFromGenome(genome, version) {
+        return version === 'before'
+            ? genome.previousPrompt || 'Original prompt'
+            : genome.currentPrompt || 'Mutated prompt';
+    }
+    extractTaskContext(genome) {
+        return genome.taskContext || 'General task context';
+    }
+    inferDomain(genome) {
+        return genome.domain || 'general';
+    }
+    convertFitnessMetrics(fitnessMetrics) {
+        return {
+            taskSuccessRate: fitnessMetrics?.successRate || 0,
+            tokenEfficiency: fitnessMetrics?.tokenEfficiency || 0,
+            responseQuality: fitnessMetrics?.quality || 0,
+            userSatisfaction: fitnessMetrics?.userSatisfaction,
+        };
+    }
+    generateTestCasesForTask(_taskDescription) {
+        return [];
+    }
+}
+//# sourceMappingURL=PGAIntegration.js.map

package/dist/gene-bank/PGAIntegration.js.map

@@ -0,0 +1 @@
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package/dist/gene-bank/SandboxTester.d.ts

@@ -0,0 +1,92 @@
+import { z } from 'zod';
+import { CognitiveGene } from './CognitiveGene';
+import type { LLMAdapter } from '../interfaces/LLMAdapter';
+import type { MetricsCollector } from '../monitoring/MetricsCollector';
+export declare const SandboxConfigSchema: z.ZodObject<{
+    testCaseCount: z.ZodDefault<z.ZodNumber>;
+    minPassRate: z.ZodDefault<z.ZodNumber>;
+    minPerformance: z.ZodDefault<z.ZodNumber>;
+    maxDegradation: z.ZodDefault<z.ZodNumber>;
+    testTimeout: z.ZodDefault<z.ZodNumber>;
+    enableSafetyChecks: z.ZodDefault<z.ZodBoolean>;
+    testModel: z.ZodOptional<z.ZodString>;
+    temperature: z.ZodDefault<z.ZodNumber>;
+}, "strip", z.ZodTypeAny, {
+    testCaseCount: number;
+    minPassRate: number;
+    minPerformance: number;
+    maxDegradation: number;
+    testTimeout: number;
+    enableSafetyChecks: boolean;
+    temperature: number;
+    testModel?: string | undefined;
+}, {
+    testCaseCount?: number | undefined;
+    minPassRate?: number | undefined;
+    minPerformance?: number | undefined;
+    maxDegradation?: number | undefined;
+    testTimeout?: number | undefined;
+    enableSafetyChecks?: boolean | undefined;
+    testModel?: string | undefined;
+    temperature?: number | undefined;
+}>;
+export type SandboxConfig = z.infer<typeof SandboxConfigSchema>;
+export interface SandboxTestCase {
+    id: string;
+    description: string;
+    input: string;
+    expectedPattern?: string;
+    successCriteria?: (output: string) => boolean;
+    timeout?: number;
+}
+export interface TestCaseResult {
+    testId: string;
+    passed: boolean;
+    output: string;
+    executionTime: number;
+    error?: string;
+    performanceScore: number;
+}
+export interface SandboxTestResult {
+    success: boolean;
+    testResults: TestCaseResult[];
+    summary: {
+        totalTests: number;
+        passed: number;
+        failed: number;
+        passRate: number;
+        averagePerformance: number;
+        totalExecutionTime: number;
+    };
+    safetyChecks: {
+        passed: boolean;
+        issues: string[];
+    };
+    recommendation: 'adopt' | 'reject' | 'needs-review';
+    reason: string;
+}
+export interface BaselinePerformance {
+    testId: string;
+    output: string;
+    performanceScore: number;
+    executionTime: number;
+}
+export declare class SandboxTester {
+    private llm;
+    private metricsCollector?;
+    private config;
+    constructor(llm: LLMAdapter, config?: Partial<SandboxConfig>, metricsCollector?: MetricsCollector | undefined);
+    testGene(gene: CognitiveGene, testCases: SandboxTestCase[], baseline?: BaselinePerformance[]): Promise<SandboxTestResult>;
+    generateBaseline(testCases: SandboxTestCase[]): Promise<BaselinePerformance[]>;
+    private runTestCase;
+    private buildEnhancedPrompt;
+    private timeoutPromise;
+    private compareWithBaseline;
+    private runSafetyChecks;
+    private containsHarmfulPattern;
+    private overridesSafety;
+    private makeRecommendation;
+    getConfig(): SandboxConfig;
+    updateConfig(updates: Partial<SandboxConfig>): void;
+}
+//# sourceMappingURL=SandboxTester.d.ts.map

package/dist/gene-bank/SandboxTester.d.ts.map

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