@pga-ai/core 0.4.0

package/dist/gene-bank/GeneBank.js

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+import { z } from 'zod';
+import { CognitiveGeneSchema, } from './CognitiveGene';
+export const GeneSearchFiltersSchema = z.object({
+    tenantId: z.string().optional(),
+    type: z.array(z.string()).optional(),
+    domain: z.array(z.string()).optional(),
+    tags: z.array(z.string()).optional(),
+    minFitness: z.number().min(0).max(1).optional(),
+    minAdoptions: z.number().int().min(0).optional(),
+    scope: z.array(z.string()).optional(),
+    verifiedOnly: z.boolean().default(false),
+    sortBy: z.enum(['fitness', 'adoptions', 'createdAt', 'updatedAt']).default('fitness'),
+    sortOrder: z.enum(['asc', 'desc']).default('desc'),
+    limit: z.number().int().min(1).max(100).default(10),
+    offset: z.number().int().min(0).default(0),
+});
+export const GeneBankConfigSchema = z.object({
+    tenantId: z.string(),
+    agentId: z.string(),
+    minFitnessThreshold: z.number().min(0).max(1).default(0.6),
+    maxGenesPerAgent: z.number().int().min(1).default(100),
+    enableTHK: z.boolean().default(true),
+    enableMarketplace: z.boolean().default(false),
+    autoAdoptFromTenant: z.boolean().default(false),
+    autoAdoptMinFitness: z.number().min(0).max(1).default(0.8),
+    maxAutoAdoptionsPerDay: z.number().int().min(0).default(3),
+});
+export class GeneBank {
+    storage;
+    metricsCollector;
+    config;
+    adoptionCountToday = 0;
+    lastAdoptionReset = new Date();
+    constructor(storage, config, metricsCollector) {
+        this.storage = storage;
+        this.metricsCollector = metricsCollector;
+        this.config = GeneBankConfigSchema.parse({
+            ...config,
+        });
+    }
+    async storeGene(gene) {
+        const startTime = Date.now();
+        try {
+            const validatedGene = CognitiveGeneSchema.parse(gene);
+            if (validatedGene.fitness.overallFitness < this.config.minFitnessThreshold) {
+                throw new Error(`Gene fitness ${validatedGene.fitness.overallFitness} below threshold ${this.config.minFitnessThreshold}`);
+            }
+            if (validatedGene.tenant.tenantId !== this.config.tenantId) {
+                throw new Error('Cannot store gene from different tenant');
+            }
+            const existingGenes = await this.storage.listByTenant(this.config.tenantId);
+            let evicted = false;
+            if (existingGenes.length >= this.config.maxGenesPerAgent) {
+                const lowestFitness = existingGenes.sort((a, b) => a.fitness.overallFitness - b.fitness.overallFitness)[0];
+                await this.storage.delete(lowestFitness.id);
+                evicted = true;
+            }
+            await this.storage.store(validatedGene);
+            this.metricsCollector?.logAudit({
+                level: 'info',
+                component: 'GeneBank',
+                operation: 'storeGene',
+                message: `Stored gene ${validatedGene.name} (${validatedGene.type}) with fitness ${validatedGene.fitness.overallFitness.toFixed(2)}`,
+                duration: Date.now() - startTime,
+                metadata: {
+                    geneId: validatedGene.id,
+                    geneType: validatedGene.type,
+                    domain: validatedGene.domain,
+                    fitness: validatedGene.fitness.overallFitness,
+                    tenantId: this.config.tenantId,
+                    evicted,
+                },
+            });
+        }
+        catch (error) {
+            this.metricsCollector?.logAudit({
+                level: 'error',
+                component: 'GeneBank',
+                operation: 'storeGene',
+                message: `Failed to store gene: ${error instanceof Error ? error.message : 'Unknown error'}`,
+                duration: Date.now() - startTime,
+                metadata: {
+                    error: error instanceof Error ? error.message : 'Unknown error',
+                },
+            });
+            throw error;
+        }
+    }
+    async getGene(geneId) {
+        return this.storage.get(geneId);
+    }
+    async updateGene(gene) {
+        const validatedGene = CognitiveGeneSchema.parse(gene);
+        const existing = await this.storage.get(validatedGene.id);
+        if (!existing) {
+            throw new Error(`Gene ${validatedGene.id} not found`);
+        }
+        if (existing.tenant.tenantId !== this.config.tenantId) {
+            throw new Error('Cannot update gene from different tenant');
+        }
+        await this.storage.update(validatedGene);
+    }
+    async deleteGene(geneId) {
+        const existing = await this.storage.get(geneId);
+        if (!existing) {
+            throw new Error(`Gene ${geneId} not found`);
+        }
+        if (existing.tenant.tenantId !== this.config.tenantId) {
+            throw new Error('Cannot delete gene from different tenant');
+        }
+        await this.storage.delete(geneId);
+    }
+    async searchGenes(filters) {
+        const startTime = Date.now();
+        try {
+            const validatedFilters = GeneSearchFiltersSchema.parse(filters);
+            const finalFilters = {
+                ...validatedFilters,
+                tenantId: this.config.enableTHK ? this.config.tenantId : undefined,
+            };
+            const results = await this.storage.search(finalFilters);
+            this.metricsCollector?.logAudit({
+                level: 'info',
+                component: 'GeneBank',
+                operation: 'searchGenes',
+                message: `Found ${results.length} genes matching filters`,
+                duration: Date.now() - startTime,
+                metadata: {
+                    resultsFound: results.length,
+                    filters: finalFilters,
+                },
+            });
+            return results;
+        }
+        catch (error) {
+            this.metricsCollector?.logAudit({
+                level: 'error',
+                component: 'GeneBank',
+                operation: 'searchGenes',
+                message: `Gene search failed: ${error instanceof Error ? error.message : 'Unknown error'}`,
+                duration: Date.now() - startTime,
+                metadata: {
+                    error: error instanceof Error ? error.message : 'Unknown error',
+                },
+            });
+            throw error;
+        }
+    }
+    async findByDomain(domain, minFitness = 0.7) {
+        return this.searchGenes({
+            domain: [domain],
+            minFitness,
+            sortBy: 'fitness',
+            sortOrder: 'desc',
+        });
+    }
+    async findByType(type, minFitness = 0.7) {
+        return this.searchGenes({
+            type: [type],
+            minFitness,
+            sortBy: 'fitness',
+            sortOrder: 'desc',
+        });
+    }
+    async getTopGenes(limit = 10) {
+        return this.searchGenes({
+            sortBy: 'fitness',
+            sortOrder: 'desc',
+            limit,
+        });
+    }
+    async getTenantGenes() {
+        if (!this.config.enableTHK) {
+            throw new Error('THK is disabled');
+        }
+        return this.storage.listByTenant(this.config.tenantId, 'tenant');
+    }
+    async getMarketplaceGenes(filters) {
+        if (!this.config.enableMarketplace) {
+            throw new Error('Marketplace is disabled');
+        }
+        return this.searchGenes({
+            ...filters,
+            scope: ['marketplace'],
+            verifiedOnly: true,
+            minFitness: 0.8,
+        });
+    }
+    async getLineage(geneId) {
+        return this.storage.getLineage(geneId);
+    }
+    async getDescendants(geneId) {
+        const allGenes = await this.storage.listByTenant(this.config.tenantId);
+        return allGenes.filter(gene => gene.lineage.parentGeneId === geneId);
+    }
+    async recordAdoption(geneId, agentId, performance) {
+        const startTime = Date.now();
+        const now = new Date();
+        if (now.getDate() !== this.lastAdoptionReset.getDate()) {
+            this.adoptionCountToday = 0;
+            this.lastAdoptionReset = now;
+        }
+        this.adoptionCountToday++;
+        await this.storage.recordAdoption(geneId, agentId, performance);
+        this.metricsCollector?.logAudit({
+            level: 'info',
+            component: 'GeneBank',
+            operation: 'recordAdoption',
+            message: `Gene ${geneId} adopted by agent ${agentId} with performance ${performance.toFixed(2)}`,
+            duration: Date.now() - startTime,
+            metadata: {
+                geneId,
+                agentId,
+                performance,
+                adoptionCountToday: this.adoptionCountToday,
+            },
+        });
+    }
+    canAutoAdopt() {
+        return this.config.autoAdoptFromTenant &&
+            this.adoptionCountToday < this.config.maxAutoAdoptionsPerDay;
+    }
+    async getStats() {
+        const allGenes = await this.storage.listByTenant(this.config.tenantId);
+        const genesByType = {};
+        const genesByDomain = {};
+        let totalFitness = 0;
+        let totalAdoptions = 0;
+        for (const gene of allGenes) {
+            genesByType[gene.type] = (genesByType[gene.type] || 0) + 1;
+            genesByDomain[gene.domain] = (genesByDomain[gene.domain] || 0) + 1;
+            totalFitness += gene.fitness.overallFitness;
+            totalAdoptions += gene.fitness.adoptionCount;
+        }
+        const topGenes = await this.getTopGenes(5);
+        const recentGenes = await this.searchGenes({
+            sortBy: 'createdAt',
+            sortOrder: 'desc',
+            limit: 5,
+        });
+        return {
+            totalGenes: allGenes.length,
+            genesByType: genesByType,
+            genesByDomain,
+            averageFitness: allGenes.length > 0 ? totalFitness / allGenes.length : 0,
+            totalAdoptions,
+            topGenes,
+            recentGenes,
+        };
+    }
+    getConfig() {
+        return { ...this.config };
+    }
+    updateConfig(updates) {
+        this.config = GeneBankConfigSchema.parse({
+            ...this.config,
+            ...updates,
+        });
+    }
+}
+//# sourceMappingURL=GeneBank.js.map

package/dist/gene-bank/GeneBank.js.map

@@ -0,0 +1 @@
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package/dist/gene-bank/GeneExtractor.d.ts

@@ -0,0 +1,59 @@
+import { z } from 'zod';
+import { TenantInfo, GeneExtractionResult } from './CognitiveGene';
+import type { LLMAdapter } from '../interfaces/LLMAdapter';
+import type { MetricsCollector } from '../monitoring/MetricsCollector';
+export declare const GeneExtractionConfigSchema: z.ZodObject<{
+    minFitnessThreshold: z.ZodDefault<z.ZodNumber>;
+    minFitnessGain: z.ZodDefault<z.ZodNumber>;
+    minConfidence: z.ZodDefault<z.ZodNumber>;
+    autoExtract: z.ZodDefault<z.ZodBoolean>;
+    extractionModel: z.ZodOptional<z.ZodString>;
+    maxTokens: z.ZodDefault<z.ZodNumber>;
+    temperature: z.ZodDefault<z.ZodNumber>;
+}, "strip", z.ZodTypeAny, {
+    temperature: number;
+    minFitnessThreshold: number;
+    minFitnessGain: number;
+    minConfidence: number;
+    autoExtract: boolean;
+    maxTokens: number;
+    extractionModel?: string | undefined;
+}, {
+    temperature?: number | undefined;
+    minFitnessThreshold?: number | undefined;
+    minFitnessGain?: number | undefined;
+    minConfidence?: number | undefined;
+    autoExtract?: boolean | undefined;
+    extractionModel?: string | undefined;
+    maxTokens?: number | undefined;
+}>;
+export type GeneExtractionConfig = z.infer<typeof GeneExtractionConfigSchema>;
+export interface MutationContext {
+    mutationId: string;
+    originalPrompt: string;
+    mutatedPrompt: string;
+    parentFitness: number;
+    mutatedFitness: number;
+    taskContext: string;
+    domain: string;
+    metrics?: {
+        taskSuccessRate?: number;
+        tokenEfficiency?: number;
+        responseQuality?: number;
+        userSatisfaction?: number;
+    };
+    parentGeneId?: string;
+}
+export declare class GeneExtractor {
+    private llm;
+    private metricsCollector?;
+    private config;
+    constructor(llm: LLMAdapter, config?: Partial<GeneExtractionConfig>, metricsCollector?: MetricsCollector | undefined);
+    extractGene(context: MutationContext, tenantInfo: TenantInfo): Promise<GeneExtractionResult>;
+    extractBatch(contexts: MutationContext[], tenantInfo: TenantInfo): Promise<GeneExtractionResult[]>;
+    private parseExtractionResponse;
+    private buildGene;
+    getConfig(): GeneExtractionConfig;
+    updateConfig(updates: Partial<GeneExtractionConfig>): void;
+}
+//# sourceMappingURL=GeneExtractor.d.ts.map

package/dist/gene-bank/GeneExtractor.d.ts.map

@@ -0,0 +1 @@
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package/dist/gene-bank/GeneExtractor.js

@@ -0,0 +1,311 @@
+import { z } from 'zod';
+import { createGeneId, } from './CognitiveGene';
+export const GeneExtractionConfigSchema = z.object({
+    minFitnessThreshold: z.number().min(0).max(1).default(0.7),
+    minFitnessGain: z.number().min(0).default(0.1),
+    minConfidence: z.number().min(0).max(1).default(0.6),
+    autoExtract: z.boolean().default(true),
+    extractionModel: z.string().optional(),
+    maxTokens: z.number().int().min(100).default(2000),
+    temperature: z.number().min(0).max(1).default(0.3),
+});
+function buildExtractionPrompt(context) {
+    return `You are a Gene Extraction AI. Your job is to analyze a successful prompt mutation and extract a reusable "Cognitive Gene" - a behavioral pattern that can be shared with other AI agents.
+
+## Mutation Analysis
+
+**Original Prompt:**
+${context.originalPrompt}
+
+**Mutated Prompt (Higher Fitness):**
+${context.mutatedPrompt}
+
+**Task Context:**
+${context.taskContext}
+
+**Domain:**
+${context.domain}
+
+**Fitness Improvement:**
+- Parent Fitness: ${context.parentFitness.toFixed(2)}
+- Mutated Fitness: ${context.mutatedFitness.toFixed(2)}
+- Gain: ${(context.mutatedFitness - context.parentFitness).toFixed(2)}
+
+## Your Task
+
+Analyze the mutation and extract a Cognitive Gene. Return a JSON object with:
+
+\`\`\`json
+{
+  "canExtract": true/false,
+  "confidence": 0.0-1.0,
+  "geneType": "tool-usage-pattern" | "reasoning-pattern" | "communication-pattern" | "error-recovery-pattern" | "context-management" | "multi-step-workflow" | "domain-expertise",
+  "name": "Short descriptive name",
+  "description": "What this gene does and why it works",
+  "instruction": "The core pattern/rule to apply",
+  "examples": [
+    {
+      "scenario": "When to use this pattern",
+      "expectedBehavior": "What should happen"
+    }
+  ],
+  "requiredCapabilities": ["List of required tools/capabilities"],
+  "applicableContexts": ["Contexts where this works best"],
+  "contraindications": ["When NOT to use this pattern"],
+  "reasoning": "Why you extracted this pattern"
+}
+\`\`\`
+
+## Guidelines
+
+1. **Identify the Key Change**: What specific change improved fitness?
+2. **Generalize**: Make the pattern reusable beyond this specific case
+3. **Be Specific**: The instruction should be clear and actionable
+4. **Provide Examples**: Show when and how to apply the pattern
+5. **Set Confidence**: How confident are you this pattern is generalizable?
+
+Return ONLY the JSON object, no additional text.`;
+}
+const ExtractionResponseSchema = z.object({
+    canExtract: z.boolean(),
+    confidence: z.number().min(0).max(1),
+    geneType: z.enum([
+        'tool-usage-pattern',
+        'reasoning-pattern',
+        'communication-pattern',
+        'error-recovery-pattern',
+        'context-management',
+        'multi-step-workflow',
+        'domain-expertise',
+    ]),
+    name: z.string(),
+    description: z.string(),
+    instruction: z.string(),
+    examples: z.array(z.object({
+        scenario: z.string(),
+        expectedBehavior: z.string(),
+    })),
+    requiredCapabilities: z.array(z.string()),
+    applicableContexts: z.array(z.string()),
+    contraindications: z.array(z.string()),
+    reasoning: z.string(),
+});
+export class GeneExtractor {
+    llm;
+    metricsCollector;
+    config;
+    constructor(llm, config, metricsCollector) {
+        this.llm = llm;
+        this.metricsCollector = metricsCollector;
+        this.config = GeneExtractionConfigSchema.parse(config || {});
+    }
+    async extractGene(context, tenantInfo) {
+        const startTime = Date.now();
+        try {
+            const fitnessGain = context.mutatedFitness - context.parentFitness;
+            if (context.mutatedFitness < this.config.minFitnessThreshold) {
+                return {
+                    success: false,
+                    gene: null,
+                    reason: `Fitness ${context.mutatedFitness} below threshold ${this.config.minFitnessThreshold}`,
+                    confidence: 0,
+                    metadata: {
+                        sourceMutationId: context.mutationId,
+                        extractionMethod: 'threshold-check',
+                        durationMs: Date.now() - startTime,
+                        timestamp: new Date().toISOString(),
+                    },
+                };
+            }
+            if (fitnessGain < this.config.minFitnessGain) {
+                return {
+                    success: false,
+                    gene: null,
+                    reason: `Fitness gain ${fitnessGain} below threshold ${this.config.minFitnessGain}`,
+                    confidence: 0,
+                    metadata: {
+                        sourceMutationId: context.mutationId,
+                        extractionMethod: 'threshold-check',
+                        durationMs: Date.now() - startTime,
+                        timestamp: new Date().toISOString(),
+                    },
+                };
+            }
+            const prompt = buildExtractionPrompt(context);
+            const response = await this.llm.chat([{ role: 'user', content: prompt }], {
+                maxTokens: this.config.maxTokens,
+                temperature: this.config.temperature,
+            });
+            const extractionData = this.parseExtractionResponse(response.content);
+            if (!extractionData.canExtract) {
+                return {
+                    success: false,
+                    gene: null,
+                    reason: extractionData.reasoning || 'LLM determined gene cannot be extracted',
+                    confidence: extractionData.confidence,
+                    metadata: {
+                        sourceMutationId: context.mutationId,
+                        extractionMethod: 'llm-analysis',
+                        durationMs: Date.now() - startTime,
+                        timestamp: new Date().toISOString(),
+                    },
+                };
+            }
+            if (extractionData.confidence < this.config.minConfidence) {
+                return {
+                    success: false,
+                    gene: null,
+                    reason: `Confidence ${extractionData.confidence} below threshold ${this.config.minConfidence}`,
+                    confidence: extractionData.confidence,
+                    metadata: {
+                        sourceMutationId: context.mutationId,
+                        extractionMethod: 'llm-analysis',
+                        durationMs: Date.now() - startTime,
+                        timestamp: new Date().toISOString(),
+                    },
+                };
+            }
+            const gene = this.buildGene(extractionData, context, tenantInfo);
+            this.metricsCollector?.logAudit({
+                level: 'info',
+                component: 'GeneExtractor',
+                operation: 'extractGene',
+                message: `Successfully extracted gene ${gene.name} (${gene.type}) with confidence ${extractionData.confidence.toFixed(2)}`,
+                duration: Date.now() - startTime,
+                metadata: {
+                    geneId: gene.id,
+                    geneType: gene.type,
+                    domain: gene.domain,
+                    sourceMutationId: context.mutationId,
+                    confidence: extractionData.confidence,
+                    fitnessGain,
+                },
+            });
+            return {
+                success: true,
+                gene,
+                confidence: extractionData.confidence,
+                metadata: {
+                    sourceMutationId: context.mutationId,
+                    extractionMethod: 'llm-analysis',
+                    durationMs: Date.now() - startTime,
+                    timestamp: new Date().toISOString(),
+                },
+            };
+        }
+        catch (error) {
+            this.metricsCollector?.logAudit({
+                level: 'error',
+                component: 'GeneExtractor',
+                operation: 'extractGene',
+                message: `Gene extraction failed: ${error instanceof Error ? error.message : 'Unknown error'}`,
+                duration: Date.now() - startTime,
+                metadata: {
+                    sourceMutationId: context.mutationId,
+                    error: error instanceof Error ? error.message : 'Unknown error',
+                },
+            });
+            return {
+                success: false,
+                gene: null,
+                reason: error instanceof Error ? error.message : 'Unknown error during extraction',
+                confidence: 0,
+                metadata: {
+                    sourceMutationId: context.mutationId,
+                    extractionMethod: 'error',
+                    durationMs: Date.now() - startTime,
+                    timestamp: new Date().toISOString(),
+                },
+            };
+        }
+    }
+    async extractBatch(contexts, tenantInfo) {
+        const results = [];
+        for (const context of contexts) {
+            const result = await this.extractGene(context, tenantInfo);
+            results.push(result);
+        }
+        return results;
+    }
+    parseExtractionResponse(responseText) {
+        try {
+            const jsonMatch = responseText.match(/\{[\s\S]*\}/);
+            if (!jsonMatch) {
+                throw new Error('No JSON found in response');
+            }
+            const json = JSON.parse(jsonMatch[0]);
+            return ExtractionResponseSchema.parse(json);
+        }
+        catch (error) {
+            throw new Error(`Failed to parse extraction response: ${error instanceof Error ? error.message : 'Unknown error'}`);
+        }
+    }
+    buildGene(extractionData, context, tenantInfo) {
+        const now = new Date().toISOString();
+        const geneId = createGeneId(tenantInfo.tenantId, extractionData.geneType);
+        const fitness = {
+            overallFitness: context.mutatedFitness,
+            taskSuccessRate: context.metrics?.taskSuccessRate || context.mutatedFitness,
+            userSatisfaction: context.metrics?.userSatisfaction,
+            tokenEfficiency: context.metrics?.tokenEfficiency || 0,
+            responseQuality: context.metrics?.responseQuality || context.mutatedFitness,
+            adoptionCount: 0,
+            adoptionPerformance: null,
+        };
+        const lineage = {
+            parentGeneId: context.parentGeneId || null,
+            generation: context.parentGeneId ? 1 : 0,
+            ancestors: context.parentGeneId ? [context.parentGeneId] : [],
+            mutationHistory: [
+                {
+                    timestamp: now,
+                    change: `Extracted from mutation ${context.mutationId}`,
+                    fitnessGain: context.mutatedFitness - context.parentFitness,
+                },
+            ],
+        };
+        const content = {
+            instruction: extractionData.instruction,
+            examples: extractionData.examples,
+            requiredCapabilities: extractionData.requiredCapabilities,
+            applicableContexts: extractionData.applicableContexts,
+            contraindications: extractionData.contraindications,
+            metadata: {
+                extractionReasoning: extractionData.reasoning,
+                sourceMutationId: context.mutationId,
+                originalPrompt: context.originalPrompt,
+                mutatedPrompt: context.mutatedPrompt,
+            },
+        };
+        const gene = {
+            id: geneId,
+            version: '1.0.0',
+            name: extractionData.name,
+            description: extractionData.description,
+            type: extractionData.geneType,
+            domain: context.domain,
+            fitness,
+            lineage,
+            content,
+            tenant: tenantInfo,
+            createdAt: now,
+            updatedAt: now,
+            tags: [
+                context.domain,
+                extractionData.geneType,
+                'extracted',
+            ],
+        };
+        return gene;
+    }
+    getConfig() {
+        return { ...this.config };
+    }
+    updateConfig(updates) {
+        this.config = GeneExtractionConfigSchema.parse({
+            ...this.config,
+            ...updates,
+        });
+    }
+}
+//# sourceMappingURL=GeneExtractor.js.map

package/dist/gene-bank/GeneExtractor.js.map

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