@pella-labs/pinakes 0.2.0 → 0.3.1

package/dist/db/schema.js

@@ -1,23 +1,23 @@
 import { sql } from 'drizzle-orm';
 import { sqliteTable, text, integer, index, primaryKey } from 'drizzle-orm/sqlite-core';
 /**
- * KG-MCP Drizzle schema (presearch.md §2.3, CLAUDE.md §Database Rules).
+ * Pinakes Drizzle schema (presearch.md §2.3, CLAUDE.md §Database Rules).
  *
- * 8 logical tables + `kg_meta` for schema versioning. Two of the eight are
- * virtual tables (`kg_chunks_fts`, `kg_chunks_vec`) that drizzle-kit can't
+ * 8 logical tables + `pinakes_meta` for schema versioning. Two of the eight are
+ * virtual tables (`pinakes_chunks_fts`, `pinakes_chunks_vec`) that drizzle-kit can't
  * model — they're created via raw SQL appended to the initial migration in
  * src/db/migrations. The drizzle code below covers the 7 regular tables
- * plus kg_meta.
+ * plus pinakes_meta.
  *
  * Invariants this schema MUST preserve:
  *
- * - `kg_nodes.id` is `sha1(scope + ':' + source_uri + ':' + section_path)`,
+ * - `pinakes_nodes.id` is `sha1(scope + ':' + source_uri + ':' + section_path)`,
  *   set by the ingester (NOT auto-generated). Re-ingesting the same
  *   markdown produces identical ids — Phase 2's idempotent upsert relies
  *   on this. The DB never sees the hashing logic; it just stores the value
  *   and enforces uniqueness via the PK.
  *
- * - `kg_chunks.id` is `sha1(node_id + ':' + chunk_index)`, same idea.
+ * - `pinakes_chunks.id` is `sha1(node_id + ':' + chunk_index)`, same idea.
  *
  * - `chunk_sha = sha1(chunk_text)` is the LOAD-BEARING field for the
  *   per-chunk skip-unchanged optimization (CLAUDE.md §Database Rules #3,
@@ -27,10 +27,10 @@ import { sqliteTable, text, integer, index, primaryKey } from 'drizzle-orm/sqlit
  *   ~50ms = 3s of blocking work that competes with the active coding LLM
  *   for Ollama. Do not remove this column.
  *
- * - `last_accessed_at` on `kg_nodes` exists for the Phase 5 personal-KG
+ * - `last_accessed_at` on `pinakes_nodes` exists for the Phase 5 personal-KG
  *   LRU eviction (Loop 6.5 A2). Phase 2 just stamps it on insert/update.
  *
- * - `source_sha` on `kg_nodes` is the file-level hash; staleness detection
+ * - `source_sha` on `pinakes_nodes` is the file-level hash; staleness detection
  *   on the query path compares this against the current on-disk hash.
  *
  * - All FK relationships use `ON DELETE CASCADE` so deleting a node cleans
@@ -39,7 +39,7 @@ import { sqliteTable, text, integer, index, primaryKey } from 'drizzle-orm/sqlit
  *   every connection in client.ts.
  */
 // ----------------------------------------------------------------------------
-// kg_meta — schema versioning + bookkeeping
+// pinakes_meta — schema versioning + bookkeeping
 // ----------------------------------------------------------------------------
 /**
  * Tiny key/value table holding `schema_version`, `last_full_rebuild`, and
@@ -50,12 +50,12 @@ import { sqliteTable, text, integer, index, primaryKey } from 'drizzle-orm/sqlit
  * (in the worst case for sqlite-vec breaking changes) drop + rebuild the
  * vec virtual table from markdown.
  */
-export const kgMeta = sqliteTable('kg_meta', {
+export const pinakesMeta = sqliteTable('pinakes_meta', {
     key: text('key').primaryKey(),
     value: text('value'),
 });
 // ----------------------------------------------------------------------------
-// kg_nodes — markdown sections + concept entities (Phase 2 only writes
+// pinakes_nodes — markdown sections + concept entities (Phase 2 only writes
 // kind='section' rows; Phase 4 adds entities, Phase 6 adds gaps)
 // ----------------------------------------------------------------------------
 /**
@@ -71,11 +71,11 @@ export const kgMeta = sqliteTable('kg_meta', {
  * Empty string for top-of-file content above any heading.
  *
  * `content` stores the full section markdown (heading + body). Chunks are
- * derived from this and stored separately in kg_chunks. We keep both because
- * `kg_execute` callers may want the whole section (`kg.get(node_id)`) instead
+ * derived from this and stored separately in pinakes_chunks. We keep both because
+ * `pinakes_execute` callers may want the whole section (`pinakes.get(node_id)`) instead
  * of paragraph-sized chunks.
  */
-export const kgNodes = sqliteTable('kg_nodes', {
+export const pinakesNodes = sqliteTable('pinakes_nodes', {
     /** sha1(scope + ':' + source_uri + ':' + section_path), set by ingester */
     id: text('id').primaryKey(),
     /** 'project' | 'personal' — enforced at app layer, not as a CHECK */
@@ -103,11 +103,11 @@ export const kgNodes = sqliteTable('kg_nodes', {
     /** Unix epoch ms of last read access — Phase 5 LRU eviction (Loop 6.5 A2) */
     lastAccessedAt: integer('last_accessed_at').notNull(),
 }, (t) => [
-    index('idx_kg_nodes_scope_uri').on(t.scope, t.sourceUri),
-    index('idx_kg_nodes_last_accessed').on(t.lastAccessedAt),
+    index('idx_pinakes_nodes_scope_uri').on(t.scope, t.sourceUri),
+    index('idx_pinakes_nodes_last_accessed').on(t.lastAccessedAt),
 ]);
 // ----------------------------------------------------------------------------
-// kg_edges — wikilinks, citations, supersedes, etc. (Phase 4+ writes; Phase 2
+// pinakes_edges — wikilinks, citations, supersedes, etc. (Phase 4+ writes; Phase 2
 // just creates the table for migration completeness)
 // ----------------------------------------------------------------------------
 /**
@@ -119,22 +119,22 @@ export const kgNodes = sqliteTable('kg_nodes', {
  * markdown parsing. The table exists now so the migration is complete and
  * Phase 4 doesn't have to add it as a separate migration.
  */
-export const kgEdges = sqliteTable('kg_edges', {
+export const pinakesEdges = sqliteTable('pinakes_edges', {
     srcId: text('src_id')
         .notNull()
-        .references(() => kgNodes.id, { onDelete: 'cascade' }),
+        .references(() => pinakesNodes.id, { onDelete: 'cascade' }),
     dstId: text('dst_id')
         .notNull()
-        .references(() => kgNodes.id, { onDelete: 'cascade' }),
+        .references(() => pinakesNodes.id, { onDelete: 'cascade' }),
     /** 'wikilink' | 'cites' | 'supersedes' | 'contradicts' | 'mentions' | 'derived_from' */
     edgeKind: text('edge_kind').notNull(),
 }, (t) => [
     primaryKey({ columns: [t.srcId, t.dstId, t.edgeKind] }),
-    index('idx_kg_edges_src').on(t.srcId),
-    index('idx_kg_edges_dst').on(t.dstId),
+    index('idx_pinakes_edges_src').on(t.srcId),
+    index('idx_pinakes_edges_dst').on(t.dstId),
 ]);
 // ----------------------------------------------------------------------------
-// kg_chunks — paragraph-level splits of nodes
+// pinakes_chunks — paragraph-level splits of nodes
 // ----------------------------------------------------------------------------
 /**
  * One row per ~500-token chunk derived from a node's `content`. The
@@ -143,8 +143,8 @@ export const kgEdges = sqliteTable('kg_edges', {
  *
  * The implicit SQLite `rowid` (auto-assigned for tables without
  * INTEGER PRIMARY KEY) is what FTS5 and sqlite-vec join on:
- *   - `kg_chunks_fts` is `content='kg_chunks', content_rowid='rowid'`
- *   - `kg_chunks_vec.rowid` matches `kg_chunks.rowid`
+ *   - `pinakes_chunks_fts` is `content='pinakes_chunks', content_rowid='rowid'`
+ *   - `pinakes_chunks_vec.rowid` matches `pinakes_chunks.rowid`
  *
  * `chunk_sha = sha1(text)` is the per-chunk skip-unchanged key. On a
  * file rewrite, the ingester compares each new chunk's chunk_sha against
@@ -153,13 +153,13 @@ export const kgEdges = sqliteTable('kg_edges', {
  * re-embedded. This is the load-bearing optimization for Pharos's
  * whole-file-rewrite-per-turn pattern (CLAUDE.md §Database Rules #3).
  */
-export const kgChunks = sqliteTable('kg_chunks', {
+export const pinakesChunks = sqliteTable('pinakes_chunks', {
     /** sha1(node_id + ':' + chunk_index) */
     id: text('id').primaryKey(),
-    /** FK to kg_nodes; cascade-delete cleans up chunks when a node goes away */
+    /** FK to pinakes_nodes; cascade-delete cleans up chunks when a node goes away */
     nodeId: text('node_id')
         .notNull()
-        .references(() => kgNodes.id, { onDelete: 'cascade' }),
+        .references(() => pinakesNodes.id, { onDelete: 'cascade' }),
     /** 0-based position within the node's chunk list */
     chunkIndex: integer('chunk_index').notNull(),
     /** The chunk's text content */
@@ -170,9 +170,9 @@ export const kgChunks = sqliteTable('kg_chunks', {
     tokenCount: integer('token_count').notNull(),
     /** Unix epoch ms of insert */
     createdAt: integer('created_at').notNull(),
-}, (t) => [index('idx_kg_chunks_node').on(t.nodeId)]);
+}, (t) => [index('idx_pinakes_chunks_node').on(t.nodeId)]);
 // ----------------------------------------------------------------------------
-// kg_log — append-only event log (Karpathy log.md materialized)
+// pinakes_log — append-only event log (Karpathy log.md materialized)
 // ----------------------------------------------------------------------------
 /**
  * Append-only event stream. Phase 2 writes:
@@ -181,9 +181,9 @@ export const kgChunks = sqliteTable('kg_chunks', {
  *   - `'rebuild:start' | 'rebuild:done'` — full-rebuild markers
  *
  * `payload` is opaque JSON shaped per `kind`. The reader is the LLM via
- * `kg.log.recent(n, opts)` in Phase 4+; Phase 2 just appends.
+ * `pinakes.log.recent(n, opts)` in Phase 4+; Phase 2 just appends.
  */
-export const kgLog = sqliteTable('kg_log', {
+export const pinakesLog = sqliteTable('pinakes_log', {
     id: integer('id').primaryKey({ autoIncrement: true }),
     /** Unix epoch ms */
     ts: integer('ts').notNull(),
@@ -195,9 +195,9 @@ export const kgLog = sqliteTable('kg_log', {
     sourceUri: text('source_uri'),
     /** Opaque JSON payload, shape per `kind` */
     payload: text('payload'),
-}, (t) => [index('idx_kg_log_ts').on(sql `${t.ts} DESC`)]);
+}, (t) => [index('idx_pinakes_log_ts').on(sql `${t.ts} DESC`)]);
 // ----------------------------------------------------------------------------
-// kg_gaps — detected concept gaps (Phase 6+ writes; Phase 2 creates table)
+// pinakes_gaps — detected concept gaps (Phase 6+ writes; Phase 2 creates table)
 // ----------------------------------------------------------------------------
 /**
  * Concept gaps detected by the Phase 6 gap-detection sub-agent. Phase 2
@@ -207,7 +207,7 @@ export const kgLog = sqliteTable('kg_log', {
  * multiple turns. `resolved_at` is set when a gap is closed (either by
  * the LLM writing about the topic or by a manual dismissal).
  */
-export const kgGaps = sqliteTable('kg_gaps', {
+export const pinakesGaps = sqliteTable('pinakes_gaps', {
     id: integer('id').primaryKey({ autoIncrement: true }),
     scope: text('scope').notNull(),
     topic: text('topic').notNull(),
@@ -216,7 +216,7 @@ export const kgGaps = sqliteTable('kg_gaps', {
     resolvedAt: integer('resolved_at'),
 });
 // ----------------------------------------------------------------------------
-// kg_audit — every tool call (Phase 5 wires writes; Phase 2 creates table)
+// pinakes_audit — every tool call (Phase 5 wires writes; Phase 2 creates table)
 // ----------------------------------------------------------------------------
 /**
  * Audit log of every MCP tool call. Phase 5 wires the dispatcher to write
@@ -224,12 +224,12 @@ export const kgGaps = sqliteTable('kg_gaps', {
  * (CLAUDE.md §Security #7). Phase 2 creates the table.
  *
  * NB: per CLAUDE.md §Security #7, the JSONL mirror path differs by scope —
- * project rows mirror to `.pharos/kg-audit.jsonl` (in the repo, safe for
- * `git add .`), personal/both rows mirror to `~/.pharos/profile/kg-audit.jsonl`.
- * Personal-scope audit rows go to a separate kg_audit table in the personal
+ * project rows mirror to `~/.pinakes/projects/<mangled>/audit.jsonl`,
+ * personal/both rows mirror to `~/.pinakes/audit.jsonl`.
+ * Personal-scope audit rows go to a separate pinakes_audit table in the personal
  * DB, never the project DB. This split is enforced at the app layer.
  */
-export const kgAudit = sqliteTable('kg_audit', {
+export const pinakesAudit = sqliteTable('pinakes_audit', {
     id: integer('id').primaryKey({ autoIncrement: true }),
     ts: integer('ts').notNull(),
     toolName: text('tool_name').notNull(),
@@ -242,18 +242,18 @@ export const kgAudit = sqliteTable('kg_audit', {
  * The list of all schema-managed tables, useful for the schema test that
  * verifies the migration creates every expected table.
  */
-export const KG_TABLES = [
-    'kg_meta',
-    'kg_nodes',
-    'kg_edges',
-    'kg_chunks',
-    'kg_log',
-    'kg_gaps',
-    'kg_audit',
+export const PINAKES_TABLES = [
+    'pinakes_meta',
+    'pinakes_nodes',
+    'pinakes_edges',
+    'pinakes_chunks',
+    'pinakes_log',
+    'pinakes_gaps',
+    'pinakes_audit',
 ];
 /**
  * The two virtual tables created via raw SQL in the migration (drizzle-kit
  * doesn't emit virtual table DDL). Schema test verifies they exist.
  */
-export const KG_VIRTUAL_TABLES = ['kg_chunks_fts', 'kg_chunks_vec'];
+export const PINAKES_VIRTUAL_TABLES = ['pinakes_chunks_fts', 'pinakes_chunks_vec'];
 //# sourceMappingURL=schema.js.map

package/dist/db/schema.js.map

@@ -1 +1 @@
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package/dist/db/types.d.ts

@@ -1,5 +1,5 @@
 /**
- * Shared types for KG-MCP query results.
+ * Shared types for Pinakes query results.
  *
  * Phase 2 introduces this file to decouple the tool handlers from any
  * single store implementation. Phase 1's `MemoryStore` defined `Chunk`
@@ -12,7 +12,7 @@ export type Scope = 'project' | 'personal' | 'both';
  * A retrieval-shaped chunk. Mirrors what Phase 1's `MemoryStore` returned
  * so the existing 13 spike tests stay green across the swap. Field shape
  * is locked — adding fields is fine; renaming/removing breaks the
- * sandbox host bindings (`kg.search` returns `{id, text, source_uri}`)
+ * sandbox host bindings (`pinakes.search` returns `{id, text, source_uri}`)
  * and the spike test asserting that shape.
  */
 export interface Chunk {

package/dist/db/types.js

@@ -1,5 +1,5 @@
 /**
- * Shared types for KG-MCP query results.
+ * Shared types for Pinakes query results.
  *
  * Phase 2 introduces this file to decouple the tool handlers from any
  * single store implementation. Phase 1's `MemoryStore` defined `Chunk`

package/dist/gaps/detector.d.ts

@@ -1,18 +1,18 @@
 import type { Database as BetterSqliteDatabase } from 'better-sqlite3';
 /**
- * Gap detector for KG-MCP Phase 6.
+ * Gap detector for Pinakes Phase 6.
  *
  * After an ingest transaction commits, scans the new node's content for
  * concept mentions. A "concept" is a term referenced via bold (`**term**`),
  * wikilinks (`[[term]]`), or backtick-quoted identifiers that appears ≥3
- * times across the entire KG but has no dedicated `kg_nodes` row (i.e., no
+ * times across the entire KG but has no dedicated `pinakes_nodes` row (i.e., no
  * node whose title matches the concept).
  *
- * Upserts into `kg_gaps` with `topic`, `first_seen_at`, `mentions_count`.
+ * Upserts into `pinakes_gaps` with `topic`, `first_seen_at`, `mentions_count`.
  * When a node is later created with a matching title, `resolved_at` is set.
  *
  * This is a read-only detection surface — the LLM fills gaps by calling
- * `kg.project.write()` to create wiki pages, and re-indexing resolves
+ * `pinakes.project.write()` to create wiki pages, and re-indexing resolves
  * the gap automatically.
  */
 /**
@@ -32,7 +32,7 @@ export declare function extractConcepts(content: string): Set<string>;
  * For each concept extracted from the ingested content:
  * 1. Count how many chunks across the KG contain the concept (case-insensitive)
  * 2. Check if a node with a matching title already exists
- * 3. If ≥3 mentions and no dedicated node → upsert into `kg_gaps`
+ * 3. If ≥3 mentions and no dedicated node → upsert into `pinakes_gaps`
  *
  * Also resolves any existing gaps that now have a dedicated node.
  *

package/dist/gaps/detector.js

@@ -1,18 +1,18 @@
 import { logger } from '../observability/logger.js';
 /**
- * Gap detector for KG-MCP Phase 6.
+ * Gap detector for Pinakes Phase 6.
  *
  * After an ingest transaction commits, scans the new node's content for
  * concept mentions. A "concept" is a term referenced via bold (`**term**`),
  * wikilinks (`[[term]]`), or backtick-quoted identifiers that appears ≥3
- * times across the entire KG but has no dedicated `kg_nodes` row (i.e., no
+ * times across the entire KG but has no dedicated `pinakes_nodes` row (i.e., no
  * node whose title matches the concept).
  *
- * Upserts into `kg_gaps` with `topic`, `first_seen_at`, `mentions_count`.
+ * Upserts into `pinakes_gaps` with `topic`, `first_seen_at`, `mentions_count`.
  * When a node is later created with a matching title, `resolved_at` is set.
  *
  * This is a read-only detection surface — the LLM fills gaps by calling
- * `kg.project.write()` to create wiki pages, and re-indexing resolves
+ * `pinakes.project.write()` to create wiki pages, and re-indexing resolves
  * the gap automatically.
  */
 // ----------------------------------------------------------------------------
@@ -65,7 +65,7 @@ export function extractConcepts(content) {
  * For each concept extracted from the ingested content:
  * 1. Count how many chunks across the KG contain the concept (case-insensitive)
  * 2. Check if a node with a matching title already exists
- * 3. If ≥3 mentions and no dedicated node → upsert into `kg_gaps`
+ * 3. If ≥3 mentions and no dedicated node → upsert into `pinakes_gaps`
  *
  * Also resolves any existing gaps that now have a dedicated node.
  *
@@ -84,16 +84,16 @@ export function detectGaps(writer, scope, content, nodesTitles) {
     if (concepts.size === 0) {
         return { gaps_created: gapsCreated, gaps_resolved: gapsResolved };
     }
-    const countChunkMentions = writer.prepare(`SELECT count(*) AS c FROM kg_chunks ch
-       JOIN kg_nodes n ON ch.node_id = n.id
+    const countChunkMentions = writer.prepare(`SELECT count(*) AS c FROM pinakes_chunks ch
+       JOIN pinakes_nodes n ON ch.node_id = n.id
       WHERE n.scope = ? AND ch.text LIKE '%' || ? || '%' COLLATE NOCASE`);
-    const findDedicatedNode = writer.prepare(`SELECT id FROM kg_nodes WHERE scope = ? AND LOWER(title) = ? LIMIT 1`);
-    // kg_gaps doesn't have a unique constraint on (scope, topic).
+    const findDedicatedNode = writer.prepare(`SELECT id FROM pinakes_nodes WHERE scope = ? AND LOWER(title) = ? LIMIT 1`);
+    // pinakes_gaps doesn't have a unique constraint on (scope, topic).
     // Check if the gap already exists and update or insert accordingly.
-    const findGap = writer.prepare(`SELECT id, resolved_at FROM kg_gaps WHERE scope = ? AND topic = ? LIMIT 1`);
-    const insertGap = writer.prepare(`INSERT INTO kg_gaps (scope, topic, first_seen_at, mentions_count)
+    const findGap = writer.prepare(`SELECT id, resolved_at FROM pinakes_gaps WHERE scope = ? AND topic = ? LIMIT 1`);
+    const insertGap = writer.prepare(`INSERT INTO pinakes_gaps (scope, topic, first_seen_at, mentions_count)
      VALUES (?, ?, ?, ?)`);
-    const updateGapCount = writer.prepare(`UPDATE kg_gaps SET mentions_count = ?, resolved_at = NULL WHERE id = ?`);
+    const updateGapCount = writer.prepare(`UPDATE pinakes_gaps SET mentions_count = ?, resolved_at = NULL WHERE id = ?`);
     const now = Date.now();
     for (const concept of concepts) {
         // Count mentions across the KG
@@ -130,7 +130,7 @@ export function resolveGaps(writer, scope, nodesTitles) {
         return 0;
     const now = Date.now();
     let resolved = 0;
-    const resolveStmt = writer.prepare(`UPDATE kg_gaps SET resolved_at = ?
+    const resolveStmt = writer.prepare(`UPDATE pinakes_gaps SET resolved_at = ?
       WHERE scope = ? AND LOWER(topic) = ? AND resolved_at IS NULL`);
     for (const title of nodesTitles) {
         if (!title)
@@ -148,12 +148,12 @@ export function queryGaps(reader, scope, opts) {
     if (opts?.resolved) {
         return reader
             .prepare(`SELECT id, topic, first_seen_at, mentions_count, resolved_at
-           FROM kg_gaps WHERE scope = ? ORDER BY mentions_count DESC`)
+           FROM pinakes_gaps WHERE scope = ? ORDER BY mentions_count DESC`)
             .all(scope);
     }
     return reader
         .prepare(`SELECT id, topic, first_seen_at, mentions_count, resolved_at
-         FROM kg_gaps WHERE scope = ? AND resolved_at IS NULL
+         FROM pinakes_gaps WHERE scope = ? AND resolved_at IS NULL
          ORDER BY mentions_count DESC`)
         .all(scope);
 }

package/dist/gaps/detector.js.map

@@ -1 +1 @@
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package/dist/ingest/chokidar.js

@@ -2,7 +2,7 @@ import { resolve } from 'node:path';
 import chokidar from 'chokidar';
 import { logger } from '../observability/logger.js';
 /**
- * `ChokidarWatcher` — file-system implementation of `IngestSource` for KG-MCP Phase 2.
+ * `ChokidarWatcher` — file-system implementation of `IngestSource` for Pinakes Phase 2.
  *
  * Watches a wiki directory recursively for `*.md` changes, with the two
  * critical adaptations for Pharos's wiki-updater (CLAUDE.md §Database Rules #4,

package/dist/ingest/ingester.d.ts

@@ -3,12 +3,12 @@ import type { Embedder } from '../retrieval/embedder.js';
 import { type Manifest, fileSha, manifestPathFor } from './manifest.js';
 import { type Chunk as ChunkText } from './parse/chunk.js';
 /**
- * IngesterService — the load-bearing single-flight writer for KG-MCP Phase 2.
+ * IngesterService — the load-bearing single-flight writer for Pinakes Phase 2.
  *
  * **What it does**: given an absolute path to a markdown file, parse it into
  * sections, chunk each section, embed only the chunks whose sha changed, and
  * upsert the result into SQLite under one transaction. Update the consistency
- * manifest, append a row to `kg_log`. Errors trigger a clean rollback and an
+ * manifest, append a row to `pinakes_log`. Errors trigger a clean rollback and an
  * error log entry, but never throw past the caller's await — they're caught,
  * logged, and re-thrown so the rebuild CLI can decide whether to abort or
  * continue.
@@ -21,7 +21,7 @@ import { type Chunk as ChunkText } from './parse/chunk.js';
  *   single-flight pattern; CLAUDE.md §Architecture #3 / §Database Rules #5.
  *
  * - **Per-chunk skip-unchanged**: on a re-ingest of an existing file, we
- *   load the existing `kg_chunks` rows for that file's nodes, build a
+ *   load the existing `pinakes_chunks` rows for that file's nodes, build a
  *   `Set<chunk_sha>` of already-embedded chunks, and only call `embedder.embed()`
  *   for chunks whose sha is NOT in the set. This is THE optimization that
  *   makes Pharos's whole-file-rewrite-per-turn pattern viable — without it,
@@ -108,7 +108,7 @@ export declare class IngesterService {
     private appendLog;
 }
 /**
- * Reset the in-memory manifest to empty. Used by `kg rebuild` when the
+ * Reset the in-memory manifest to empty. Used by `pinakes rebuild` when the
  * caller passes `--clean` to force a full re-ingest from scratch.
  */
 export declare function freshManifest(): Manifest;

package/dist/ingest/ingester.js

@@ -81,7 +81,7 @@ export class IngesterService {
         const abs = resolve(absPath);
         const sourceUri = toStoredUri(abs, this.wikiRoot, this.scope);
         this.bundle.writer
-            .prepare('DELETE FROM kg_nodes WHERE scope = ? AND source_uri = ?')
+            .prepare('DELETE FROM pinakes_nodes WHERE scope = ? AND source_uri = ?')
             .run(this.scope, sourceUri);
         this.manifest = removeManifestEntry(this.manifest, abs, this.wikiRoot, this.scope);
         writeManifest(this.manifestPath, this.manifest);
@@ -170,37 +170,37 @@ export class IngesterService {
         const now = Date.now();
         const totalChunks = planned.reduce((acc, n) => acc + n.chunks.length, 0);
         this.runInTransaction((w) => {
-            // Delete old vec rows BEFORE deleting kg_chunks rows. We need to know
-            // the rowids first because the FK cascade will drop the kg_chunks rows
+            // Delete old vec rows BEFORE deleting pinakes_chunks rows. We need to know
+            // the rowids first because the FK cascade will drop the pinakes_chunks rows
             // (and sqlite-vec doesn't have FK awareness).
             const oldRowids = w
                 .prepare(`SELECT c.rowid AS rowid
-             FROM kg_chunks c JOIN kg_nodes n ON c.node_id = n.id
+             FROM pinakes_chunks c JOIN pinakes_nodes n ON c.node_id = n.id
             WHERE n.scope = ? AND n.source_uri = ?`)
                 .all(this.scope, sourceUri);
             if (oldRowids.length > 0) {
                 const placeholders = oldRowids.map(() => '?').join(',');
-                w.prepare(`DELETE FROM kg_chunks_vec WHERE rowid IN (${placeholders})`).run(...oldRowids.map((r) => r.rowid));
+                w.prepare(`DELETE FROM pinakes_chunks_vec WHERE rowid IN (${placeholders})`).run(...oldRowids.map((r) => r.rowid));
             }
             // Delete old nodes for this file (cascades to chunks → FTS5 trigger fires).
             // Also delete outbound edges from this file's nodes (edges don't cascade
-            // from kg_nodes FK — they reference src_id/dst_id without ON DELETE CASCADE
+            // from pinakes_nodes FK — they reference src_id/dst_id without ON DELETE CASCADE
             // on dst_id, so we delete src edges explicitly).
             const oldNodeIds = w
-                .prepare(`SELECT id FROM kg_nodes WHERE scope = ? AND source_uri = ?`)
+                .prepare(`SELECT id FROM pinakes_nodes WHERE scope = ? AND source_uri = ?`)
                 .all(this.scope, sourceUri)
                 .map((r) => r.id);
             if (oldNodeIds.length > 0) {
                 const ph = oldNodeIds.map(() => '?').join(',');
-                w.prepare(`DELETE FROM kg_edges WHERE src_id IN (${ph})`).run(...oldNodeIds);
+                w.prepare(`DELETE FROM pinakes_edges WHERE src_id IN (${ph})`).run(...oldNodeIds);
             }
-            w.prepare('DELETE FROM kg_nodes WHERE scope = ? AND source_uri = ?').run(this.scope, sourceUri);
+            w.prepare('DELETE FROM pinakes_nodes WHERE scope = ? AND source_uri = ?').run(this.scope, sourceUri);
             // Insert new nodes
-            const insertNode = w.prepare(`INSERT INTO kg_nodes (id, scope, source_uri, section_path, kind, title, content, source_sha, token_count, created_at, updated_at, last_accessed_at, confidence)
+            const insertNode = w.prepare(`INSERT INTO pinakes_nodes (id, scope, source_uri, section_path, kind, title, content, source_sha, token_count, created_at, updated_at, last_accessed_at, confidence)
          VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`);
-            const insertChunk = w.prepare(`INSERT INTO kg_chunks (id, node_id, chunk_index, text, chunk_sha, token_count, created_at)
+            const insertChunk = w.prepare(`INSERT INTO pinakes_chunks (id, node_id, chunk_index, text, chunk_sha, token_count, created_at)
          VALUES (?, ?, ?, ?, ?, ?, ?)`);
-            const insertVec = w.prepare('INSERT INTO kg_chunks_vec(rowid, embedding) VALUES (?, ?)');
+            const insertVec = w.prepare('INSERT INTO pinakes_chunks_vec(rowid, embedding) VALUES (?, ?)');
             for (const node of planned) {
                 const sectionTokenCount = countTokens(node.section.content);
                 insertNode.run(node.nodeId, this.scope, sourceUri, node.section.section_path, node.section.kind, node.section.title || null, node.section.content, sourceSha, sectionTokenCount, now, now, now, confidence);
@@ -226,7 +226,7 @@ export class IngesterService {
             // Scan each node's content for [[wikilinks]], resolve targets to
             // existing node IDs, and insert edges. Unresolved links are silently
             // skipped (gap detector already surfaces those).
-            const insertEdge = w.prepare(`INSERT OR IGNORE INTO kg_edges (src_id, dst_id, edge_kind) VALUES (?, ?, 'wikilink')`);
+            const insertEdge = w.prepare(`INSERT OR IGNORE INTO pinakes_edges (src_id, dst_id, edge_kind) VALUES (?, ?, 'wikilink')`);
             for (const node of planned) {
                 const links = extractWikilinks(node.section.content);
                 for (const linkTarget of links) {
@@ -237,7 +237,7 @@ export class IngesterService {
                 }
             }
         });
-        // Step 7: append kg_log row
+        // Step 7: append pinakes_log row
         this.appendLog('ingest:done', absPath, {
             nodes: planned.length,
             chunks_added: totalChunks - chunksSkipped,
@@ -280,9 +280,9 @@ export class IngesterService {
         const out = new Map();
         const rows = this.bundle.writer
             .prepare(`SELECT c.chunk_sha AS chunk_sha, vec.embedding AS embedding
-           FROM kg_chunks c
-           JOIN kg_nodes n ON c.node_id = n.id
-           LEFT JOIN kg_chunks_vec vec ON vec.rowid = c.rowid
+           FROM pinakes_chunks c
+           JOIN pinakes_nodes n ON c.node_id = n.id
+           LEFT JOIN pinakes_chunks_vec vec ON vec.rowid = c.rowid
           WHERE n.scope = ? AND n.source_uri = ?`)
             .all(this.scope, sourceUri);
         for (const row of rows) {
@@ -304,12 +304,12 @@ export class IngesterService {
     appendLog(kind, absPath, payload) {
         try {
             this.bundle.writer
-                .prepare(`INSERT INTO kg_log (ts, scope, kind, source_uri, payload)
+                .prepare(`INSERT INTO pinakes_log (ts, scope, kind, source_uri, payload)
            VALUES (?, ?, ?, ?, ?)`)
                 .run(Date.now(), this.scope, kind, toStoredUri(absPath, this.wikiRoot, this.scope), JSON.stringify(payload));
         }
         catch (err) {
-            logger.warn({ err, kind, absPath }, 'failed to append kg_log row');
+            logger.warn({ err, kind, absPath }, 'failed to append pinakes_log row');
         }
     }
 }
@@ -328,7 +328,7 @@ function sha1(input) {
 // Cold-start helper for the rebuild CLI
 // ----------------------------------------------------------------------------
 /**
- * Reset the in-memory manifest to empty. Used by `kg rebuild` when the
+ * Reset the in-memory manifest to empty. Used by `pinakes rebuild` when the
  * caller passes `--clean` to force a full re-ingest from scratch.
  */
 export function freshManifest() {
@@ -364,7 +364,7 @@ function resolveWikilinkTarget(w, scope, target) {
     // We match the last path component without .md extension.
     const withMd = target.endsWith('.md') ? target : `${target}.md`;
     const row = w
-        .prepare(`SELECT id FROM kg_nodes
+        .prepare(`SELECT id FROM pinakes_nodes
        WHERE scope = ? AND (
          source_uri = ? OR
          source_uri LIKE ? OR