@pella-labs/pinakes 0.2.0 → 0.3.1

package/dist/cli/status.js.map

@@ -1 +1 @@
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+{"version":3,"file":"status.js","sourceRoot":"","sources":["../../src/cli/status.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAErC,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,iBAAiB,CAAC;AAClD,OAAO,EAAE,cAAc,EAAE,sBAAsB,EAAE,MAAM,iBAAiB,CAAC;AACzE,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAiC/C;;;;GAIG;AACH,MAAM,UAAU,aAAa,CAAC,UAAyB,EAAE;IACvD,MAAM,SAAS,GAAG,gBAAgB,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC;IACvD,MAAM,SAAS,GAAG,gBAAgB,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;IAExD,OAAO;QACL,YAAY,CAAC,SAAS,EAAE,SAAS,CAAC;QAClC,YAAY,CAAC,UAAU,EAAE,SAAS,CAAC;KACpC,CAAC;AACJ,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,YAAY,CAAC,QAAuB;IAClD,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,QAAQ,EAAE,CAAC;QACzB,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;QACvD,IAAI,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;YACd,KAAK,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;YAClC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACf,SAAS;QACX,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,aAAa,IAAI,WAAW,EAAE,CAAC,CAAC;QAClE,KAAK,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,aAAa,IAAI,UAAU,EAAE,CAAC,CAAC;QACjE,KAAK,CAAC,IAAI,CACR,wBAAwB,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,SAAS,EAAE,CACpG,CAAC;QACF,KAAK,MAAM,KAAK,IAAI,CAAC,GAAG,cAAc,EAAE,GAAG,sBAAsB,CAAC,EAAE,CAAC;YACnE,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;YACtC,KAAK,CAAC,IAAI,CAAC,KAAK,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,KAAK,EAAE,CAAC,CAAC;QAC/C,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,+EAA+E;AAC/E,YAAY;AACZ,+EAA+E;AAE/E,SAAS,YAAY,CAAC,KAA6B,EAAE,MAAc;IACjE,MAAM,MAAM,GAAgB;QAC1B,KAAK;QACL,MAAM;QACN,MAAM,EAAE,UAAU,CAAC,MAAM,CAAC;QAC1B,aAAa,EAAE,IAAI;QACnB,eAAe,EAAE,IAAI;QACrB,aAAa,EAAE,IAAI;QACnB,SAAS,EAAE,EAAE;KACd,CAAC;IAEF,IAAI,CAAC,MAAM,CAAC,MAAM;QAAE,OAAO,MAAM,CAAC;IAElC,uEAAuE;IACvE,qEAAqE;IACrE,yEAAyE;IACzE,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,EAAE,aAAa,EAAE,KAAK,EAAE,CAAC,CAAC;IACxD,IAAI,CAAC;QACH,MAAM,CAAC,aAAa,GAAI,MAAM,CAAC,MAAM,CAAC,OAAO,CAAC,8BAA8B,CAAC,CAAC,GAAG,EAE/E,CAAC,CAAC,CAAC;QAEL,MAAM,SAAS,GAAG,MAAM,CAAC,MAAM;aAC5B,OAAO,CAAC,6DAA6D,CAAC;aACtE,GAAG,EAAmC,CAAC;QAC1C,MAAM,CAAC,aAAa,GAAG,SAAS,EAAE,KAAK,IAAI,IAAI,CAAC;QAEhD,MAAM,UAAU,GAAG,MAAM,CAAC,MAAM;aAC7B,OAAO,CAAC,gEAAgE,CAAC;aACzE,GAAG,EAAmC,CAAC;QAC1C,MAAM,CAAC,eAAe,GAAG,UAAU,CAAC,CAAC,CAAC,QAAQ,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QAE5E,KAAK,MAAM,KAAK,IAAI,CAAC,GAAG,cAAc,EAAE,GAAG,sBAAsB,CAAC,EAAE,CAAC;YACnE,IAAI,CAAC;gBACH,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,OAAO,CAAC,6BAA6B,KAAK,EAAE,CAAC,CAAC,GAAG,EAE1E,CAAC;gBACF,MAAM,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;YAClC,CAAC;YAAC,MAAM,CAAC;gBACP,8DAA8D;gBAC9D,MAAM,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;YAC9B,CAAC;QACH,CAAC;IACH,CAAC;YAAS,CAAC;QACT,OAAO,CAAC,MAAM,CAAC,CAAC;IAClB,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/db/client.d.ts

@@ -2,7 +2,7 @@ import { type Database as BetterSqliteDatabase } from 'better-sqlite3';
 import { type BetterSQLite3Database } from 'drizzle-orm/better-sqlite3';
 import * as schema from './schema.js';
 /**
- * SQLite connection management for KG-MCP.
+ * SQLite connection management for Pinakes.
  *
  * **Single-writer + read-pool-of-2** invariant (CLAUDE.md §Architecture #3,
  * §Database Rules #1):
@@ -22,7 +22,7 @@ import * as schema from './schema.js';
  *
  * **sqlite-vec extension** is loaded on every connection so that the vec0
  * virtual table is queryable from any reader and writable by the writer.
- * The migration that creates `kg_chunks_vec` requires the extension to be
+ * The migration that creates `pinakes_chunks_vec` requires the extension to be
  * loaded BEFORE drizzle's `migrate()` runs — this file orders things so
  * that load happens first.
  *
@@ -64,7 +64,7 @@ declare function isAllowedSqliteVersion(version: string): boolean;
 declare function applyPragmas(db: BetterSqliteDatabase): void;
 /**
  * Load the sqlite-vec extension on a connection. Must be called BEFORE any
- * query that touches `kg_chunks_vec`, including the migration that creates
+ * query that touches `pinakes_chunks_vec`, including the migration that creates
  * the virtual table.
  *
  * better-sqlite3 disables loadExtension() by default; we re-enable it on
@@ -80,7 +80,7 @@ declare function loadSqliteVec(db: BetterSqliteDatabase): void;
  *   4. Load sqlite-vec on each connection
  *   5. Verify SQLite version (3.50.4 or ≥3.51.3, never 3.51.0)
  *   6. Run drizzle migrations on the writer
- *   7. Stamp `kg_meta.schema_version='1'` if not yet set
+ *   7. Stamp `pinakes_meta.schema_version='1'` if not yet set
  *
  * Returns a `DbBundle` ready for repository / ingester use.
  *

package/dist/db/client.js

@@ -65,7 +65,7 @@ function applyPragmas(db) {
 }
 /**
  * Load the sqlite-vec extension on a connection. Must be called BEFORE any
- * query that touches `kg_chunks_vec`, including the migration that creates
+ * query that touches `pinakes_chunks_vec`, including the migration that creates
  * the virtual table.
  *
  * better-sqlite3 disables loadExtension() by default; we re-enable it on
@@ -107,7 +107,7 @@ export function openDb(path, options = {}) {
     if (!isAllowedSqliteVersion(versionRow.v)) {
         // Clean up before throwing so we don't leak file handles.
         closeDb({ path: absPath, writer, readers, drizzleWriter: drizzle(writer, { schema }) });
-        throw new Error(`SQLite version ${versionRow.v} is not allowed for KG-MCP — requires 3.50.4 or >=3.51.3 (presearch D18). ` +
+        throw new Error(`SQLite version ${versionRow.v} is not allowed for Pinakes — requires 3.50.4 or >=3.51.3 (presearch D18). ` +
             `better-sqlite3@12.8.0 bundles 3.51.3; if you see this, your better-sqlite3 was compiled against the system sqlite.`);
     }
     // Build the drizzle wrapper before step 6 so migrate() can use it.
@@ -120,7 +120,7 @@ export function openDb(path, options = {}) {
     // Step 7: stamp schema_version=1 if absent. Subsequent phases bump this.
     if (runMigrations) {
         writer
-            .prepare('INSERT OR IGNORE INTO kg_meta (key, value) VALUES (?, ?)')
+            .prepare('INSERT OR IGNORE INTO pinakes_meta (key, value) VALUES (?, ?)')
             .run('schema_version', '2');
     }
     logger.info({ path: absPath, sqliteVersion: versionRow.v }, 'opened SQLite db');

package/dist/db/client.js.map

@@ -1 +1 @@
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package/dist/db/migrations/0002_rename_kg_to_pinakes.sql

@@ -0,0 +1,49 @@
+-- Rename all kg_* tables to pinakes_* (clean break for v0.2.0 → v0.3.0)
+-- Regular tables use ALTER TABLE RENAME. Virtual tables need special handling.
+
+-- Step 1: Rename regular tables
+ALTER TABLE `kg_audit` RENAME TO `pinakes_audit`;--> statement-breakpoint
+ALTER TABLE `kg_chunks` RENAME TO `pinakes_chunks`;--> statement-breakpoint
+ALTER TABLE `kg_edges` RENAME TO `pinakes_edges`;--> statement-breakpoint
+ALTER TABLE `kg_gaps` RENAME TO `pinakes_gaps`;--> statement-breakpoint
+ALTER TABLE `kg_log` RENAME TO `pinakes_log`;--> statement-breakpoint
+ALTER TABLE `kg_meta` RENAME TO `pinakes_meta`;--> statement-breakpoint
+ALTER TABLE `kg_nodes` RENAME TO `pinakes_nodes`;--> statement-breakpoint
+
+-- Step 2: Drop old FTS5 triggers (they reference the old table names)
+DROP TRIGGER IF EXISTS `kg_chunks_fts_ai`;--> statement-breakpoint
+DROP TRIGGER IF EXISTS `kg_chunks_fts_ad`;--> statement-breakpoint
+DROP TRIGGER IF EXISTS `kg_chunks_fts_au`;--> statement-breakpoint
+
+-- Step 3: Drop and recreate FTS5 virtual table with new content table name
+DROP TABLE IF EXISTS `kg_chunks_fts`;--> statement-breakpoint
+
+CREATE VIRTUAL TABLE `pinakes_chunks_fts` USING fts5(
+  text,
+  content='pinakes_chunks',
+  content_rowid='rowid',
+  tokenize='unicode61 remove_diacritics 2'
+);--> statement-breakpoint
+
+-- Step 4: Recreate FTS5 sync triggers with new names
+CREATE TRIGGER `pinakes_chunks_fts_ai` AFTER INSERT ON `pinakes_chunks` BEGIN
+  INSERT INTO `pinakes_chunks_fts`(`rowid`, `text`) VALUES (new.`rowid`, new.`text`);
+END;--> statement-breakpoint
+
+CREATE TRIGGER `pinakes_chunks_fts_ad` AFTER DELETE ON `pinakes_chunks` BEGIN
+  INSERT INTO `pinakes_chunks_fts`(`pinakes_chunks_fts`, `rowid`, `text`) VALUES('delete', old.`rowid`, old.`text`);
+END;--> statement-breakpoint
+
+CREATE TRIGGER `pinakes_chunks_fts_au` AFTER UPDATE ON `pinakes_chunks` BEGIN
+  INSERT INTO `pinakes_chunks_fts`(`pinakes_chunks_fts`, `rowid`, `text`) VALUES('delete', old.`rowid`, old.`text`);
+  INSERT INTO `pinakes_chunks_fts`(`rowid`, `text`) VALUES (new.`rowid`, new.`text`);
+END;--> statement-breakpoint
+
+-- Step 5: Recreate sqlite-vec virtual table (ALTER TABLE RENAME doesn't
+-- rename vec0's internal shadow tables, so we must drop+create+copy)
+CREATE VIRTUAL TABLE `pinakes_chunks_vec` USING vec0(embedding FLOAT[384]);--> statement-breakpoint
+INSERT INTO `pinakes_chunks_vec`(`rowid`, `embedding`) SELECT `rowid`, `embedding` FROM `kg_chunks_vec`;--> statement-breakpoint
+DROP TABLE IF EXISTS `kg_chunks_vec`;--> statement-breakpoint
+
+-- Step 6: Repopulate FTS5 index from renamed chunks table
+INSERT INTO `pinakes_chunks_fts`(`rowid`, `text`) SELECT `rowid`, `text` FROM `pinakes_chunks`;

package/dist/db/migrations/{migrations/meta/0001_snapshot.json → meta/0002_snapshot.json}

@@ -1,11 +1,11 @@
 {
   "version": "6",
   "dialect": "sqlite",
-  "id": "0c86efba-d829-4261-9806-2230452df23c",
-  "prevId": "b3e9b0d1-ad8e-4ff9-8e7c-664ddb109318",
+  "id": "a1b2c3d4-e5f6-7890-abcd-ef1234567890",
+  "prevId": "0c86efba-d829-4261-9806-2230452df23c",
   "tables": {
-    "kg_audit": {
-      "name": "kg_audit",
+    "pinakes_audit": {
+      "name": "pinakes_audit",
       "columns": {
         "id": {
           "name": "id",
@@ -63,8 +63,8 @@
       "uniqueConstraints": {},
       "checkConstraints": {}
     },
-    "kg_chunks": {
-      "name": "kg_chunks",
+    "pinakes_chunks": {
+      "name": "pinakes_chunks",
       "columns": {
         "id": {
           "name": "id",
@@ -117,8 +117,8 @@
         }
       },
       "indexes": {
-        "idx_kg_chunks_node": {
-          "name": "idx_kg_chunks_node",
+        "idx_pinakes_chunks_node": {
+          "name": "idx_pinakes_chunks_node",
           "columns": [
             "node_id"
           ],
@@ -126,10 +126,10 @@
         }
       },
       "foreignKeys": {
-        "kg_chunks_node_id_kg_nodes_id_fk": {
-          "name": "kg_chunks_node_id_kg_nodes_id_fk",
-          "tableFrom": "kg_chunks",
-          "tableTo": "kg_nodes",
+        "pinakes_chunks_node_id_pinakes_nodes_id_fk": {
+          "name": "pinakes_chunks_node_id_pinakes_nodes_id_fk",
+          "tableFrom": "pinakes_chunks",
+          "tableTo": "pinakes_nodes",
           "columnsFrom": [
             "node_id"
           ],
@@ -144,8 +144,8 @@
       "uniqueConstraints": {},
       "checkConstraints": {}
     },
-    "kg_edges": {
-      "name": "kg_edges",
+    "pinakes_edges": {
+      "name": "pinakes_edges",
       "columns": {
         "src_id": {
           "name": "src_id",
@@ -170,15 +170,15 @@
         }
       },
       "indexes": {
-        "idx_kg_edges_src": {
-          "name": "idx_kg_edges_src",
+        "idx_pinakes_edges_src": {
+          "name": "idx_pinakes_edges_src",
           "columns": [
             "src_id"
           ],
           "isUnique": false
         },
-        "idx_kg_edges_dst": {
-          "name": "idx_kg_edges_dst",
+        "idx_pinakes_edges_dst": {
+          "name": "idx_pinakes_edges_dst",
           "columns": [
             "dst_id"
           ],
@@ -186,10 +186,10 @@
         }
       },
       "foreignKeys": {
-        "kg_edges_src_id_kg_nodes_id_fk": {
-          "name": "kg_edges_src_id_kg_nodes_id_fk",
-          "tableFrom": "kg_edges",
-          "tableTo": "kg_nodes",
+        "pinakes_edges_src_id_pinakes_nodes_id_fk": {
+          "name": "pinakes_edges_src_id_pinakes_nodes_id_fk",
+          "tableFrom": "pinakes_edges",
+          "tableTo": "pinakes_nodes",
           "columnsFrom": [
             "src_id"
           ],
@@ -199,10 +199,10 @@
           "onDelete": "cascade",
           "onUpdate": "no action"
         },
-        "kg_edges_dst_id_kg_nodes_id_fk": {
-          "name": "kg_edges_dst_id_kg_nodes_id_fk",
-          "tableFrom": "kg_edges",
-          "tableTo": "kg_nodes",
+        "pinakes_edges_dst_id_pinakes_nodes_id_fk": {
+          "name": "pinakes_edges_dst_id_pinakes_nodes_id_fk",
+          "tableFrom": "pinakes_edges",
+          "tableTo": "pinakes_nodes",
           "columnsFrom": [
             "dst_id"
           ],
@@ -214,20 +214,20 @@
         }
       },
       "compositePrimaryKeys": {
-        "kg_edges_src_id_dst_id_edge_kind_pk": {
+        "pinakes_edges_src_id_dst_id_edge_kind_pk": {
           "columns": [
             "src_id",
             "dst_id",
             "edge_kind"
           ],
-          "name": "kg_edges_src_id_dst_id_edge_kind_pk"
+          "name": "pinakes_edges_src_id_dst_id_edge_kind_pk"
         }
       },
       "uniqueConstraints": {},
       "checkConstraints": {}
     },
-    "kg_gaps": {
-      "name": "kg_gaps",
+    "pinakes_gaps": {
+      "name": "pinakes_gaps",
       "columns": {
         "id": {
           "name": "id",
@@ -279,8 +279,8 @@
       "uniqueConstraints": {},
       "checkConstraints": {}
     },
-    "kg_log": {
-      "name": "kg_log",
+    "pinakes_log": {
+      "name": "pinakes_log",
       "columns": {
         "id": {
           "name": "id",
@@ -326,8 +326,8 @@
         }
       },
       "indexes": {
-        "idx_kg_log_ts": {
-          "name": "idx_kg_log_ts",
+        "idx_pinakes_log_ts": {
+          "name": "idx_pinakes_log_ts",
           "columns": [
             "\"ts\" DESC"
           ],
@@ -339,8 +339,8 @@
       "uniqueConstraints": {},
       "checkConstraints": {}
     },
-    "kg_meta": {
-      "name": "kg_meta",
+    "pinakes_meta": {
+      "name": "pinakes_meta",
       "columns": {
         "key": {
           "name": "key",
@@ -363,8 +363,8 @@
       "uniqueConstraints": {},
       "checkConstraints": {}
     },
-    "kg_nodes": {
-      "name": "kg_nodes",
+    "pinakes_nodes": {
+      "name": "pinakes_nodes",
       "columns": {
         "id": {
           "name": "id",
@@ -461,16 +461,16 @@
         }
       },
       "indexes": {
-        "idx_kg_nodes_scope_uri": {
-          "name": "idx_kg_nodes_scope_uri",
+        "idx_pinakes_nodes_scope_uri": {
+          "name": "idx_pinakes_nodes_scope_uri",
           "columns": [
             "scope",
             "source_uri"
           ],
           "isUnique": false
         },
-        "idx_kg_nodes_last_accessed": {
-          "name": "idx_kg_nodes_last_accessed",
+        "idx_pinakes_nodes_last_accessed": {
+          "name": "idx_pinakes_nodes_last_accessed",
           "columns": [
             "last_accessed_at"
           ],
@@ -492,7 +492,7 @@
   },
   "internal": {
     "indexes": {
-      "idx_kg_log_ts": {
+      "idx_pinakes_log_ts": {
         "columns": {
           "\"ts\" DESC": {
             "isExpression": true
@@ -501,4 +501,4 @@
       }
     }
   }
-}
+}

package/dist/db/migrations/meta/_journal.json

@@ -15,6 +15,13 @@
       "when": 1775768662604,
       "tag": "0001_icy_dust",
       "breakpoints": true
+    },
+    {
+      "idx": 2,
+      "version": "6",
+      "when": 1776192000000,
+      "tag": "0002_rename_kg_to_pinakes",
+      "breakpoints": true
     }
   ]
 }

package/dist/db/repository.js

@@ -69,7 +69,7 @@ export class Repository {
         const reader = nextReader(bundle);
         const rows = reader
             .prepare(`SELECT c.id AS id, c.text AS text, n.source_uri AS source_uri, c.chunk_index AS chunk_index
-           FROM kg_chunks c JOIN kg_nodes n ON c.node_id = n.id
+           FROM pinakes_chunks c JOIN pinakes_nodes n ON c.node_id = n.id
           WHERE n.scope = ?
             AND lower(c.text) LIKE '%' || lower(?) || '%'
           ORDER BY n.source_uri, c.chunk_index`)
@@ -101,7 +101,7 @@ export class Repository {
         const reader = nextReader(bundle);
         const row = reader
             .prepare(`SELECT c.id AS id, c.text AS text, n.source_uri AS source_uri, c.chunk_index AS chunk_index
-           FROM kg_chunks c JOIN kg_nodes n ON c.node_id = n.id
+           FROM pinakes_chunks c JOIN pinakes_nodes n ON c.node_id = n.id
           WHERE n.scope = ? AND c.id = ?
           LIMIT 1`)
             .get(scope, id);
@@ -150,7 +150,7 @@ export class Repository {
         const reader = nextReader(bundle);
         const row = reader
             .prepare(`SELECT count(*) AS c
-           FROM kg_chunks ch JOIN kg_nodes n ON ch.node_id = n.id
+           FROM pinakes_chunks ch JOIN pinakes_nodes n ON ch.node_id = n.id
           WHERE n.scope = ?`)
             .get(scope);
         return row?.c ?? 0;
@@ -165,8 +165,8 @@ export class Repository {
             return;
         const placeholders = chunkIds.map(() => '?').join(',');
         writer
-            .prepare(`UPDATE kg_nodes SET last_accessed_at = ?
-          WHERE id IN (SELECT node_id FROM kg_chunks WHERE id IN (${placeholders}))`)
+            .prepare(`UPDATE pinakes_nodes SET last_accessed_at = ?
+          WHERE id IN (SELECT node_id FROM pinakes_chunks WHERE id IN (${placeholders}))`)
             .run(Date.now(), ...chunkIds);
     }
 }

package/dist/db/repository.js.map

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