@organon-methodology/tools 0.3.0

package/dist/core/frontmatter-parser.js

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+/**
+ * YAML frontmatter extraction utility.
+ *
+ * Parses the --- delimited YAML block at the top of organon files.
+ * Returns typed Frontmatter or null if missing/invalid.
+ */
+import { parse as parseYaml } from 'yaml';
+const FRONTMATTER_REGEX = /^---\r?\n([\s\S]*?)\r?\n---/;
+/**
+ * Extract and parse YAML frontmatter from file content.
+ */
+export function parseFrontmatter(content) {
+    const match = content.match(FRONTMATTER_REGEX);
+    if (!match) {
+        return { frontmatter: null, rawFrontmatter: '', body: content };
+    }
+    const rawFrontmatter = match[1];
+    const body = content.slice(match[0].length).replace(/^\r?\n/, '');
+    try {
+        const parsed = parseYaml(rawFrontmatter);
+        if (parsed === null || typeof parsed !== 'object') {
+            return { frontmatter: null, rawFrontmatter, body };
+        }
+        return { frontmatter: parsed, rawFrontmatter, body };
+    }
+    catch {
+        return { frontmatter: null, rawFrontmatter, body };
+    }
+}
+/**
+ * Build a ParsedOrganonFile from raw file content and path.
+ */
+export function parseOrganonFile(path, content) {
+    const { frontmatter, rawFrontmatter, body } = parseFrontmatter(content);
+    return { path, frontmatter, rawFrontmatter, body, content };
+}
+/**
+ * Estimate token count from content.
+ * Heuristic: ~3.5 characters per token for markdown text.
+ * (Accounts for spaces, punctuation, and markdown syntax)
+ */
+export function estimateTokens(content) {
+    return Math.ceil(content.length / 3.5);
+}
+/**
+ * Count entries in a numbered/bulleted section.
+ * Matches patterns like:
+ *   1. **Name.**
+ *   ### 1. Name
+ *   - **Name.**
+ *   ### Invariant 1:
+ */
+export function countSectionEntries(sectionContent) {
+    const lines = sectionContent.split('\n');
+    let count = 0;
+    for (const line of lines) {
+        const trimmed = line.trim();
+        // Match numbered entries: "1. **", "1. ", "### 1."
+        if (/^\d+\.\s/.test(trimmed)) {
+            count++;
+        }
+        // Match heading-style entries: "### Invariant 1:", "### Name"
+        else if (/^#{2,4}\s+(?:Invariant\s+)?\d+/i.test(trimmed)) {
+            count++;
+        }
+    }
+    return count;
+}
+/**
+ * Extract a specific ## section from markdown content.
+ * Returns the content between the matched heading and the next ## heading (or EOF).
+ */
+export function extractSection(content, heading) {
+    // Escape special regex characters in heading but allow flexible whitespace
+    const escapedHeading = heading.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+    const pattern = new RegExp(`^##\\s+${escapedHeading}.*$`, 'm');
+    const match = content.match(pattern);
+    if (!match || match.index === undefined)
+        return null;
+    const start = match.index + match[0].length;
+    const rest = content.slice(start);
+    // Find next ## heading
+    const nextHeading = rest.match(/^##\s+/m);
+    const sectionContent = nextHeading && nextHeading.index !== undefined
+        ? rest.slice(0, nextHeading.index)
+        : rest;
+    return sectionContent.trim();
+}
+/**
+ * Count rows in a markdown table (excluding header and separator rows).
+ */
+export function countTableRows(sectionContent) {
+    const lines = sectionContent.split('\n');
+    let inTable = false;
+    let headerSeen = false;
+    let count = 0;
+    for (const line of lines) {
+        const trimmed = line.trim();
+        if (trimmed.startsWith('|') && trimmed.endsWith('|')) {
+            if (!inTable) {
+                inTable = true;
+                continue; // header row
+            }
+            if (!headerSeen) {
+                // separator row (|---|---|)
+                if (/^\|[\s\-:|]+\|$/.test(trimmed)) {
+                    headerSeen = true;
+                    continue;
+                }
+            }
+            if (headerSeen) {
+                count++;
+            }
+        }
+        else {
+            inTable = false;
+            headerSeen = false;
+        }
+    }
+    return count;
+}
+//# sourceMappingURL=frontmatter-parser.js.map

package/dist/core/frontmatter-parser.js.map

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package/dist/core/frontmatter-parser.test.d.ts

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+export {};
+//# sourceMappingURL=frontmatter-parser.test.d.ts.map

package/dist/core/frontmatter-parser.test.d.ts.map

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package/dist/core/frontmatter-parser.test.js

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+import { describe, it, expect } from 'vitest';
+import { parseFrontmatter, parseOrganonFile, estimateTokens, countSectionEntries, extractSection, countTableRows, } from './frontmatter-parser.js';
+describe('parseFrontmatter', () => {
+    it('parses valid YAML frontmatter', () => {
+        const content = `---
+type: constraints
+scope: domain
+name: test
+version: "1.0"
+summary: A test file
+token_estimate: 500
+---
+
+# Content here`;
+        const result = parseFrontmatter(content);
+        expect(result.frontmatter).not.toBeNull();
+        expect(result.frontmatter.type).toBe('constraints');
+        expect(result.frontmatter.scope).toBe('domain');
+        expect(result.frontmatter.name).toBe('test');
+        expect(result.frontmatter.version).toBe('1.0');
+        expect(result.body).toContain('# Content here');
+        expect(result.rawFrontmatter).toContain('type: constraints');
+    });
+    it('returns null frontmatter for files without frontmatter', () => {
+        const content = '# Just a markdown file\n\nNo frontmatter here.';
+        const result = parseFrontmatter(content);
+        expect(result.frontmatter).toBeNull();
+        expect(result.rawFrontmatter).toBe('');
+        expect(result.body).toBe(content);
+    });
+    it('returns null frontmatter for invalid YAML', () => {
+        const content = `---
+{{not: valid: yaml: [}}
+---
+
+# Content`;
+        const result = parseFrontmatter(content);
+        expect(result.frontmatter).toBeNull();
+    });
+    it('handles frontmatter with arrays and nested objects', () => {
+        const content = `---
+type: procedures
+scope: methodology
+name: test-proto
+version: "1.0"
+summary: Test
+token_estimate: 300
+protocols:
+  - id: PROTO-TEST-1
+    name: Test Protocol
+    steps: 5
+    automation_tier: manual
+    complexity: medium
+---
+
+# Content`;
+        const result = parseFrontmatter(content);
+        expect(result.frontmatter.protocols).toHaveLength(1);
+        expect(result.frontmatter.protocols[0].id).toBe('PROTO-TEST-1');
+    });
+    it('handles Windows-style line endings', () => {
+        const content = '---\r\ntype: constraints\r\nname: test\r\n---\r\n\r\n# Content';
+        const result = parseFrontmatter(content);
+        expect(result.frontmatter).not.toBeNull();
+        expect(result.frontmatter.type).toBe('constraints');
+    });
+});
+describe('parseOrganonFile', () => {
+    it('returns a complete ParsedOrganonFile', () => {
+        const content = `---
+type: constraints
+scope: meta
+name: test
+version: "1.0"
+summary: Test
+token_estimate: 200
+---
+
+# Body`;
+        const result = parseOrganonFile('book-llms/ETHOS.md', content);
+        expect(result.path).toBe('book-llms/ETHOS.md');
+        expect(result.frontmatter).not.toBeNull();
+        expect(result.body).toContain('# Body');
+        expect(result.content).toBe(content);
+    });
+});
+describe('estimateTokens', () => {
+    it('estimates ~1 token per 3.5 characters', () => {
+        const content = 'a'.repeat(400);
+        expect(estimateTokens(content)).toBe(115); // ceil(400/3.5) = 115
+    });
+    it('rounds up', () => {
+        const content = 'a'.repeat(5);
+        expect(estimateTokens(content)).toBe(2); // ceil(5/3.5) = 2
+    });
+});
+describe('countSectionEntries', () => {
+    it('counts numbered entries', () => {
+        const section = `
+1. **Rule one.** Description.
+2. **Rule two.** Description.
+3. **Rule three.** Description.
+`;
+        expect(countSectionEntries(section)).toBe(3);
+    });
+    it('counts heading-style entries', () => {
+        const section = `
+### 1. First heading
+Content.
+
+### 2. Second heading
+Content.
+`;
+        expect(countSectionEntries(section)).toBe(2);
+    });
+    it('returns 0 for empty section', () => {
+        expect(countSectionEntries('')).toBe(0);
+    });
+    it('ignores non-numbered lines', () => {
+        const section = `
+Some text before.
+- bullet point
+* another bullet
+1. **Actual entry.** Real one.
+More text.
+`;
+        expect(countSectionEntries(section)).toBe(1);
+    });
+});
+describe('extractSection', () => {
+    it('extracts a section by heading', () => {
+        const content = `## Identity
+
+Some identity content.
+
+## Invariants
+
+1. **Rule 1.** Description.
+2. **Rule 2.** Description.
+
+## Principles
+
+1. **Principle 1.** Description.
+`;
+        const section = extractSection(content, 'Invariants');
+        expect(section).not.toBeNull();
+        expect(section).toContain('Rule 1');
+        expect(section).toContain('Rule 2');
+        expect(section).not.toContain('Principle 1');
+        expect(section).not.toContain('Some identity');
+    });
+    it('returns null for missing section', () => {
+        const content = '## Identity\n\nContent.';
+        expect(extractSection(content, 'Invariants')).toBeNull();
+    });
+    it('extracts the last section (no next heading)', () => {
+        const content = `## First
+
+First content.
+
+## Last
+
+Last content here.
+`;
+        const section = extractSection(content, 'Last');
+        expect(section).not.toBeNull();
+        expect(section).toContain('Last content here.');
+    });
+});
+describe('countTableRows', () => {
+    it('counts data rows excluding header and separator', () => {
+        const section = `
+| Situation | Action |
+|-----------|--------|
+| When X | Do Y |
+| When A | Do B |
+| When C | Do D |
+`;
+        expect(countTableRows(section)).toBe(3);
+    });
+    it('returns 0 for no table', () => {
+        expect(countTableRows('Just plain text')).toBe(0);
+    });
+    it('handles multiple tables', () => {
+        const section = `
+| Col1 | Col2 |
+|------|------|
+| A | B |
+
+Some text between.
+
+| Col1 | Col2 |
+|------|------|
+| C | D |
+| E | F |
+`;
+        expect(countTableRows(section)).toBe(3);
+    });
+});
+//# sourceMappingURL=frontmatter-parser.test.js.map

package/dist/core/frontmatter-parser.test.js.map

@@ -0,0 +1 @@
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package/dist/core/generate-frontmatter.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Auto-generate frontmatter from file content.
+ *
+ * Analyzes the file's content to infer type, scope, name, version,
+ * summary, token_estimate, and type-specific counts. Can be used to
+ * bootstrap frontmatter for new files or update stale counts.
+ */
+import type { FileSystem, Frontmatter, FrontmatterScope, FrontmatterType, GenerateFrontmatterResult, OrganonConfig } from './types.js';
+export interface GenerateFrontmatterOptions {
+    projectRoot: string;
+    config: OrganonConfig;
+    fs: FileSystem;
+    /** File to generate frontmatter for (project-relative path) */
+    file: string;
+    /** If true, write updated frontmatter back to file */
+    update?: boolean;
+    /** Override auto-detected type */
+    type?: FrontmatterType;
+    /** Override auto-detected scope */
+    scope?: FrontmatterScope;
+}
+export declare function generateFrontmatter(options: GenerateFrontmatterOptions): Promise<GenerateFrontmatterResult>;
+/**
+ * Serialize generated frontmatter as a YAML block (with --- delimiters).
+ */
+export declare function serializeFrontmatter(fm: Partial<Frontmatter>): string;
+//# sourceMappingURL=generate-frontmatter.d.ts.map

package/dist/core/generate-frontmatter.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/generate-frontmatter.js

@@ -0,0 +1,219 @@
+/**
+ * Auto-generate frontmatter from file content.
+ *
+ * Analyzes the file's content to infer type, scope, name, version,
+ * summary, token_estimate, and type-specific counts. Can be used to
+ * bootstrap frontmatter for new files or update stale counts.
+ */
+import { parseFrontmatter, estimateTokens, extractSection, countSectionEntries, countTableRows } from './frontmatter-parser.js';
+import { parseProtocols } from './add-protocols-array.js';
+import { joinPath, baseName, dirName } from './config.js';
+import { stringify as yamlStringify } from 'yaml';
+// ---------------------------------------------------------------------------
+// Main
+// ---------------------------------------------------------------------------
+export async function generateFrontmatter(options) {
+    const { projectRoot, fs, file } = options;
+    const errors = [];
+    const warnings = [];
+    const absPath = joinPath(projectRoot, file);
+    let content;
+    try {
+        content = await fs.readFile(absPath);
+    }
+    catch {
+        return {
+            success: false,
+            file,
+            generated: {},
+            errors: [{
+                    severity: 'error',
+                    code: 'FILE_READ_ERROR',
+                    message: `Cannot read file: ${file}`,
+                    file,
+                }],
+            warnings: [],
+        };
+    }
+    const existing = parseFrontmatter(content);
+    const body = existing.body || content;
+    const existingFm = existing.frontmatter;
+    // Infer fields from content and path
+    const type = options.type ?? existingFm?.type ?? inferType(file);
+    const scope = options.scope ?? existingFm?.scope ?? inferScope(file);
+    const name = existingFm?.name ?? inferName(file);
+    const version = existingFm?.version ?? '1.0';
+    const summary = existingFm?.summary ?? inferSummary(body);
+    const tokenEstimate = estimateTokens(content);
+    const generated = {
+        type,
+        scope,
+        name,
+        version,
+        summary,
+        token_estimate: tokenEstimate,
+    };
+    // Type-specific fields
+    if (type === 'constraints') {
+        const invariantsSection = extractSection(body, 'Invariants');
+        if (invariantsSection) {
+            generated.invariants_count = countSectionEntries(invariantsSection);
+        }
+        const principlesSection = extractSection(body, 'Principles');
+        if (principlesSection) {
+            generated.principles_count = countSectionEntries(principlesSection);
+        }
+        const heuristicsSection = extractSection(body, 'Decision Heuristics');
+        if (heuristicsSection) {
+            generated.heuristics_count = countTableRows(heuristicsSection);
+        }
+    }
+    if (type === 'rationale') {
+        const decisionsSection = extractSection(body, 'Design Decisions');
+        if (decisionsSection) {
+            generated.decision_count = countSectionEntries(decisionsSection);
+        }
+    }
+    if (type === 'procedures') {
+        const protocols = parseProtocols(body);
+        if (protocols.length > 0) {
+            generated.protocols_count = protocols.length;
+            generated.protocols = protocols;
+        }
+    }
+    if (type === 'navigation') {
+        generated.provides = inferProvides(body);
+        generated.parent = inferParent(file);
+    }
+    // Preserve existing relationship fields
+    if (existingFm) {
+        if (existingFm.inherits_from)
+            generated.inherits_from = existingFm.inherits_from;
+        if (existingFm.related_domains)
+            generated.related_domains = existingFm.related_domains;
+        if (existingFm.related_features)
+            generated.related_features = existingFm.related_features;
+        if (existingFm.primary_rfcs)
+            generated.primary_rfcs = existingFm.primary_rfcs;
+        if (existingFm.secondary_rfcs)
+            generated.secondary_rfcs = existingFm.secondary_rfcs;
+        if (existingFm.load_priority)
+            generated.load_priority = existingFm.load_priority;
+        if (existingFm.required_for)
+            generated.required_for = existingFm.required_for;
+        if (existingFm.audience)
+            generated.audience = existingFm.audience;
+        if (existingFm.last_reviewed)
+            generated.last_reviewed = existingFm.last_reviewed;
+        if (existingFm.methodology_version)
+            generated.methodology_version = existingFm.methodology_version;
+    }
+    return {
+        success: errors.length === 0,
+        file,
+        generated,
+        errors,
+        warnings,
+    };
+}
+/**
+ * Serialize generated frontmatter as a YAML block (with --- delimiters).
+ */
+export function serializeFrontmatter(fm) {
+    const yaml = yamlStringify(fm, { lineWidth: 120 });
+    return `---\n${yaml}---\n`;
+}
+// ---------------------------------------------------------------------------
+// Inference helpers
+// ---------------------------------------------------------------------------
+function inferType(file) {
+    const name = baseName(file).toUpperCase();
+    if (name === 'ETHOS.MD')
+        return 'constraints';
+    if (name === 'PHILOSOPHY.MD')
+        return 'rationale';
+    if (name === 'PROTOCOL.MD' || name === 'PROTOCOLS.MD')
+        return 'procedures';
+    if (name === 'README.MD')
+        return 'navigation';
+    if (name === 'COMPONENTS.MD')
+        return 'mapping';
+    // Default based on content — but since we don't have content here, pick constraints
+    return 'constraints';
+}
+function inferScope(file) {
+    const path = file.replace(/\\/g, '/');
+    if (path.includes('/domains/'))
+        return 'domain';
+    if (path.includes('/features/'))
+        return 'feature';
+    if (path.includes('/components/'))
+        return 'component';
+    if (path.includes('/methodology/'))
+        return 'methodology';
+    if (path.includes('book-llms/') || path.includes('book-humans/'))
+        return 'meta';
+    // Top-level files are product scope
+    const depth = path.split('/').length;
+    if (depth <= 2)
+        return 'product';
+    return 'meta';
+}
+function inferName(file) {
+    const dir = dirName(file);
+    const parts = dir.replace(/\\/g, '/').split('/');
+    const parentDir = parts[parts.length - 1];
+    if (parentDir && parentDir !== '.' && parentDir !== '') {
+        return parentDir.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-|-$/g, '');
+    }
+    // Fallback: use filename without extension
+    const filename = baseName(file);
+    return filename.replace(/\.md$/i, '').toLowerCase().replace(/[^a-z0-9]+/g, '-');
+}
+function inferSummary(body) {
+    // Look for the first line that's not a heading, empty, or horizontal rule
+    const lines = body.split('\n');
+    for (const line of lines) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        if (trimmed.startsWith('#'))
+            continue;
+        if (trimmed.startsWith('---'))
+            continue;
+        if (trimmed.startsWith('>')) {
+            // Blockquote — use as summary
+            const text = trimmed.replace(/^>\s*/, '');
+            if (text.length > 200)
+                return text.slice(0, 197) + '...';
+            return text;
+        }
+        // First paragraph line
+        if (trimmed.length > 200)
+            return trimmed.slice(0, 197) + '...';
+        return trimmed;
+    }
+    return 'No summary available';
+}
+function inferProvides(body) {
+    const provides = [];
+    const lines = body.split('\n');
+    for (const line of lines) {
+        const trimmed = line.trim();
+        // Look for links or list items
+        const linkMatch = trimmed.match(/^\-\s*\[([^\]]+)\]/);
+        if (linkMatch) {
+            provides.push(linkMatch[1]);
+        }
+    }
+    return provides.length > 0 ? provides : ['contents'];
+}
+function inferParent(file) {
+    const dir = dirName(file);
+    const parts = dir.replace(/\\/g, '/').split('/');
+    if (parts.length >= 2) {
+        return parts[parts.length - 2];
+    }
+    return 'root';
+}
+//# sourceMappingURL=generate-frontmatter.js.map

package/dist/core/generate-frontmatter.js.map

@@ -0,0 +1 @@
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package/dist/core/generate-frontmatter.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=generate-frontmatter.test.d.ts.map

package/dist/core/generate-frontmatter.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-frontmatter.test.d.ts","sourceRoot":"","sources":["../../src/core/generate-frontmatter.test.ts"],"names":[],"mappings":""}