@organon-methodology/tools 0.3.0

package/dist/core/validate-frontmatter.test.js

@@ -0,0 +1,366 @@
+import { describe, it, expect } from 'vitest';
+import { validateFrontmatter } from './validate-frontmatter.js';
+import { MemoryFileSystem, makeEthos, makeReadme } from './test-helpers.js';
+function makeConfig(projectRoot) {
+    return {
+        projectRoot,
+        organonPaths: ['.'],
+        organonGlobs: ['**/ETHOS.md', '**/PHILOSOPHY.md', '**/README.md'],
+        ignorePatterns: ['node_modules/**'],
+        workflowPaths: {},
+        freshnessThresholdHours: 24,
+    };
+}
+describe('validateFrontmatter', () => {
+    describe('Stage 1: Schema', () => {
+        it('passes valid ethos files', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': makeEthos({ name: 'test', scope: 'product' }),
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(true);
+            expect(result.filesChecked).toBe(1);
+        });
+        it('reports missing frontmatter', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': '# No frontmatter\n\nJust content.',
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(false);
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_MISSING' }));
+        });
+        it('reports invalid type enum', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': `---
+type: invalid_type
+scope: domain
+name: test
+version: "1.0"
+summary: Test
+token_estimate: 100
+---
+
+# Content`,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(false);
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_INVALID_TYPE' }));
+        });
+        it('reports non-kebab-case name', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': `---
+type: constraints
+scope: domain
+name: CamelCase
+version: "1.0"
+summary: Test
+token_estimate: 100
+---
+
+# Content`,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(false);
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_NAME_FORMAT' }));
+        });
+        it('reports invalid version format', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': `---
+type: constraints
+scope: domain
+name: test
+version: "v1"
+summary: Test
+token_estimate: 100
+---
+
+# Content`,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(false);
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_VERSION_FORMAT' }));
+        });
+        it('reports summary exceeding 200 characters', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': `---
+type: constraints
+scope: domain
+name: test
+version: "1.0"
+summary: ${'a'.repeat(201)}
+token_estimate: 100
+---
+
+# Content`,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(false);
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_SUMMARY_TOO_LONG' }));
+        });
+        it('warns about missing type-specific fields', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': `---
+type: constraints
+scope: domain
+name: test
+version: "1.0"
+summary: Test
+token_estimate: 100
+---
+
+# Content`,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [1],
+            });
+            expect(result.success).toBe(true);
+            expect(result.warnings).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_MISSING_TYPE_FIELD' }));
+        });
+    });
+    describe('Stage 3: Truthfulness', () => {
+        it('detects invariant count mismatch', async () => {
+            const content = makeEthos({ invariants: 3 }).replace('invariants_count: 3', 'invariants_count: 5');
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': content,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            expect(result.errors).toContainEqual(expect.objectContaining({
+                code: 'FRONTMATTER_COUNT_MISMATCH',
+                message: expect.stringContaining('invariants_count'),
+            }));
+        });
+        it('detects principles count mismatch', async () => {
+            const content = makeEthos({ principles: 2 }).replace('principles_count: 2', 'principles_count: 5');
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': content,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            expect(result.errors).toContainEqual(expect.objectContaining({
+                code: 'FRONTMATTER_COUNT_MISMATCH',
+                message: expect.stringContaining('principles_count'),
+            }));
+        });
+        it('warns on token estimate drift beyond 2x (load-or-skip misleading)', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': `---
+type: constraints
+scope: domain
+name: test
+version: "1.0"
+summary: Test
+token_estimate: 10000
+---
+
+# Short content`,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            expect(result.warnings).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_TOKEN_DRIFT' }));
+        });
+        it('detects invariants array count mismatch', async () => {
+            const content = makeEthos({
+                invariants: 2,
+                extra: {
+                    invariants: `\n  - id: INV-TEST-1\n    name: rule-one\n  - id: INV-TEST-2\n    name: rule-two\n  - id: INV-TEST-3\n    name: rule-three`,
+                },
+            });
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': content,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_INVARIANT_COUNT_MISMATCH' }));
+        });
+        it('detects invalid invariant ID format', async () => {
+            const content = makeEthos({
+                extra: {
+                    invariants: `\n  - id: BAD-FORMAT\n    name: bad`,
+                },
+            });
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': content,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_INVARIANT_ID_FORMAT' }));
+        });
+        it('detects duplicate invariant IDs', async () => {
+            const content = makeEthos({
+                extra: {
+                    invariants: `\n  - id: INV-TEST-1\n    name: first\n  - id: INV-TEST-1\n    name: duplicate`,
+                },
+            });
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': content,
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_INVARIANT_DUPLICATE_ID' }));
+        });
+        it('passes when counts match', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': makeEthos({ invariants: 5, principles: 3, heuristics: 4 }),
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['ETHOS.md'],
+                stages: [3],
+            });
+            const countErrors = result.errors.filter((e) => e.code === 'FRONTMATTER_COUNT_MISMATCH');
+            expect(countErrors).toHaveLength(0);
+        });
+    });
+    describe('Stage 4: Consistency', () => {
+        it('warns when name does not match parent directory', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/organon/domains/genesis/ETHOS.md': makeEthos({ name: 'wrong-name', scope: 'domain' }),
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['organon/domains/genesis/ETHOS.md'],
+                stages: [4],
+            });
+            expect(result.warnings).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_NAME_DIR_MISMATCH' }));
+        });
+        it('reports missing workflow for automated protocol', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/PROTOCOL.md': `---
+type: procedures
+scope: domain
+name: test
+version: "1.0"
+summary: Test
+token_estimate: 200
+protocols_count: 1
+protocols:
+  - id: PROTO-TEST-1
+    name: Test
+    steps: 6
+    automation_tier: automated
+    complexity: high
+---
+
+## Steps
+1. Do thing.`,
+            });
+            const config = makeConfig('/project');
+            config.organonGlobs.push('**/PROTOCOL.md');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                files: ['PROTOCOL.md'],
+                stages: [4],
+            });
+            expect(result.errors).toContainEqual(expect.objectContaining({ code: 'FRONTMATTER_MISSING_WORKFLOW' }));
+        });
+    });
+    describe('auto-discovery', () => {
+        it('discovers all organon files when no files specified', async () => {
+            const fs = new MemoryFileSystem({
+                '/project/ETHOS.md': makeEthos({ name: 'root', scope: 'product' }),
+                '/project/README.md': makeReadme({ name: 'root', scope: 'product' }),
+            });
+            const config = makeConfig('/project');
+            const result = await validateFrontmatter({
+                projectRoot: '/project',
+                config,
+                fs,
+                stages: [1],
+            });
+            expect(result.filesChecked).toBe(2);
+        });
+    });
+});
+//# sourceMappingURL=validate-frontmatter.test.js.map

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package/dist/core/validate-workflow.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Workflow quality validation.
+ *
+ * Checks workflow files against the quality attributes defined in
+ * workflow-authoring.md: completeness, context sufficiency, error
+ * recoverability, and tool references.
+ *
+ * Registered as the 'workflow-quality' verification gate.
+ */
+import type { FileSystem, OrganonConfig, WorkflowValidationResult } from './types.js';
+export interface ValidateWorkflowOptions {
+    projectRoot: string;
+    config: OrganonConfig;
+    fs: FileSystem;
+}
+export declare function validateWorkflow(options: ValidateWorkflowOptions): Promise<WorkflowValidationResult>;
+//# sourceMappingURL=validate-workflow.d.ts.map

package/dist/core/validate-workflow.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"validate-workflow.d.ts","sourceRoot":"","sources":["../../src/core/validate-workflow.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAIH,OAAO,KAAK,EAEV,UAAU,EACV,aAAa,EAEb,wBAAwB,EACzB,MAAM,YAAY,CAAC;AAMpB,MAAM,WAAW,uBAAuB;IACtC,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,aAAa,CAAC;IACtB,EAAE,EAAE,UAAU,CAAC;CAChB;AAcD,wBAAsB,gBAAgB,CACpC,OAAO,EAAE,uBAAuB,GAC/B,OAAO,CAAC,wBAAwB,CAAC,CAyLnC"}

package/dist/core/validate-workflow.js

@@ -0,0 +1,233 @@
+/**
+ * Workflow quality validation.
+ *
+ * Checks workflow files against the quality attributes defined in
+ * workflow-authoring.md: completeness, context sufficiency, error
+ * recoverability, and tool references.
+ *
+ * Registered as the 'workflow-quality' verification gate.
+ */
+import { parseFrontmatter, extractSection } from './frontmatter-parser.js';
+import { joinPath } from './config.js';
+// ---------------------------------------------------------------------------
+// Constants
+// ---------------------------------------------------------------------------
+const LOADS_SIZE_THRESHOLD = 10;
+const TABLE_ROW_RE = /^\|[^|]+\|[^|]+\|/m;
+const STEP_RE = /^\d+\.\s/gm;
+// ---------------------------------------------------------------------------
+// Main
+// ---------------------------------------------------------------------------
+export async function validateWorkflow(options) {
+    const { projectRoot, config, fs } = options;
+    const allErrors = [];
+    const allWarnings = [];
+    const results = [];
+    // Discover workflow files
+    const workflowFiles = await discoverWorkflowFiles(projectRoot, config, fs);
+    for (const file of workflowFiles) {
+        const fileErrors = [];
+        const fileWarnings = [];
+        const absPath = joinPath(projectRoot, file);
+        let content;
+        try {
+            content = await fs.readFile(absPath);
+        }
+        catch {
+            fileErrors.push({
+                severity: 'error',
+                code: 'FILE_READ_ERROR',
+                message: `Cannot read workflow file: ${file}`,
+                file,
+            });
+            results.push({ file, valid: false, errors: fileErrors, warnings: fileWarnings });
+            allErrors.push(...fileErrors);
+            continue;
+        }
+        const { frontmatter, body } = parseFrontmatter(content);
+        // --- Schema checks (errors) ---
+        const protocolId = frontmatter?.['protocol_id'];
+        const protocolFile = frontmatter?.['protocol_file'];
+        const tools = frontmatter?.['tools'];
+        const loads = frontmatter?.['loads'];
+        if (!protocolId) {
+            fileErrors.push({
+                severity: 'error',
+                code: 'WORKFLOW_MISSING_PROTOCOL_ID',
+                message: 'Workflow is missing required field: protocol_id',
+                file,
+                suggestion: 'Add protocol_id to frontmatter referencing the protocol this workflow implements',
+            });
+        }
+        if (!protocolFile) {
+            fileErrors.push({
+                severity: 'error',
+                code: 'WORKFLOW_MISSING_PROTOCOL_FILE',
+                message: 'Workflow is missing required field: protocol_file',
+                file,
+                suggestion: 'Add protocol_file to frontmatter with the path to the protocol source',
+            });
+        }
+        if (!tools || !Array.isArray(tools) || tools.length === 0) {
+            fileErrors.push({
+                severity: 'error',
+                code: 'WORKFLOW_MISSING_TOOLS',
+                message: 'Workflow is missing required field: tools (must be a non-empty array)',
+                file,
+                suggestion: 'Add tools array listing the tools this workflow orchestrates',
+            });
+        }
+        if (!loads || !Array.isArray(loads) || loads.length === 0) {
+            fileErrors.push({
+                severity: 'error',
+                code: 'WORKFLOW_MISSING_LOADS',
+                message: 'Workflow is missing required field: loads (must be a non-empty array)',
+                file,
+                suggestion: 'Add loads array listing organon files to load before execution',
+            });
+        }
+        // --- Loads sufficiency checks (errors) ---
+        if (loads && Array.isArray(loads)) {
+            for (const loadPath of loads) {
+                const absLoadPath = joinPath(projectRoot, loadPath);
+                const exists = await fs.exists(absLoadPath);
+                if (!exists) {
+                    fileErrors.push({
+                        severity: 'error',
+                        code: 'WORKFLOW_BROKEN_LOADS_REF',
+                        message: `Loads path '${loadPath}' does not resolve to an existing file`,
+                        file,
+                        suggestion: `Check the path or remove '${loadPath}' from loads array`,
+                    });
+                }
+            }
+            // Loads overload warning
+            if (loads.length > LOADS_SIZE_THRESHOLD) {
+                fileWarnings.push({
+                    severity: 'warning',
+                    code: 'WORKFLOW_LOADS_OVERLOAD',
+                    message: `Loads array has ${loads.length} entries (threshold: ${LOADS_SIZE_THRESHOLD}). Consider narrowing to only required files.`,
+                    file,
+                });
+            }
+        }
+        // --- Error recovery check (warnings) ---
+        const recoverySection = extractSection(body, 'Error Recovery')
+            ?? extractSection(body, 'Recovery');
+        if (!recoverySection) {
+            fileWarnings.push({
+                severity: 'warning',
+                code: 'WORKFLOW_NO_ERROR_RECOVERY',
+                message: 'Workflow has no ## Error Recovery or ## Recovery section',
+                file,
+                suggestion: 'Add an error recovery section with a failure/recovery table',
+            });
+        }
+        else if (!TABLE_ROW_RE.test(recoverySection)) {
+            fileWarnings.push({
+                severity: 'warning',
+                code: 'WORKFLOW_RECOVERY_NO_TABLE',
+                message: 'Error recovery section exists but has no failure/recovery table',
+                file,
+                suggestion: 'Add a table with | Failure | Recovery Action | columns',
+            });
+        }
+        // --- Step coverage check (warnings) ---
+        if (protocolFile && protocolId) {
+            const stepCount = await getProtocolStepCount(projectRoot, protocolFile, protocolId, fs);
+            if (stepCount !== null) {
+                const stepsSection = extractSection(body, 'Steps');
+                if (stepsSection) {
+                    const workflowSteps = countSteps(stepsSection);
+                    if (workflowSteps < stepCount) {
+                        fileWarnings.push({
+                            severity: 'warning',
+                            code: 'WORKFLOW_STEP_COUNT_LOW',
+                            message: `Workflow has ${workflowSteps} steps but protocol ${protocolId} has ${stepCount}`,
+                            file,
+                            suggestion: 'Add missing steps or document why they are skipped',
+                        });
+                    }
+                }
+            }
+        }
+        // --- Tool reference check (warnings) ---
+        if (tools && Array.isArray(tools)) {
+            for (const tool of tools) {
+                // Check both the exact tool id (e.g. "organon-verify") and the
+                // CLI-command form (e.g. "organon verify") so kebab-case ids
+                // match natural command invocations in the workflow body.
+                const cliForm = tool.replace(/-/g, ' ');
+                if (!body.includes(tool) && !body.includes(cliForm)) {
+                    fileWarnings.push({
+                        severity: 'warning',
+                        code: 'WORKFLOW_UNREFERENCED_TOOL',
+                        message: `Tool '${tool}' is listed in tools array but not referenced in workflow body`,
+                        file,
+                        suggestion: `Reference '${tool}' in the Steps section or remove it from the tools array`,
+                    });
+                }
+            }
+        }
+        const valid = fileErrors.length === 0;
+        results.push({ file, valid, errors: fileErrors, warnings: fileWarnings });
+        allErrors.push(...fileErrors);
+        allWarnings.push(...fileWarnings);
+    }
+    return {
+        success: allErrors.length === 0,
+        workflowsChecked: workflowFiles.length,
+        workflowsWithErrors: results.filter((r) => !r.valid).length,
+        workflowsWithWarnings: results.filter((r) => r.warnings.length > 0).length,
+        results,
+        errors: allErrors,
+        warnings: allWarnings,
+    };
+}
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+function countSteps(stepsSection) {
+    const matches = stepsSection.match(STEP_RE);
+    return matches ? matches.length : 0;
+}
+async function getProtocolStepCount(projectRoot, protocolFile, protocolId, fs) {
+    const absPath = joinPath(projectRoot, protocolFile);
+    try {
+        const content = await fs.readFile(absPath);
+        const { frontmatter } = parseFrontmatter(content);
+        if (frontmatter?.protocols && Array.isArray(frontmatter.protocols)) {
+            const proto = frontmatter.protocols.find((p) => p.id === protocolId);
+            if (proto && typeof proto.steps === 'number') {
+                return proto.steps;
+            }
+        }
+    }
+    catch {
+        // Protocol file not found or unreadable — skip this check
+    }
+    return null;
+}
+async function discoverWorkflowFiles(projectRoot, config, fs) {
+    const files = new Set();
+    const paths = config.workflowPaths;
+    const searchPaths = [
+        paths.claudeCode,
+        paths.cursor,
+        paths.generic,
+    ].filter((p) => p !== undefined);
+    for (const dir of searchPaths) {
+        const fullDir = joinPath(projectRoot, dir);
+        if (await fs.exists(fullDir)) {
+            const matches = await fs.glob('**/*.md', {
+                cwd: fullDir,
+                ignore: [],
+            });
+            for (const m of matches) {
+                files.add(joinPath(dir, m));
+            }
+        }
+    }
+    return [...files].sort();
+}
+//# sourceMappingURL=validate-workflow.js.map

package/dist/core/validate-workflow.js.map

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package/dist/core/validate-workflow.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=validate-workflow.test.d.ts.map

package/dist/core/validate-workflow.test.d.ts.map

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