@optave/codegraph 3.12.0 → 3.15.0

package/dist/db/connection.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"connection.d.ts","sourceRoot":"","sources":["../../src/db/connection.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,qBAAqB,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAEzE,OAAO,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAwClD,oDAAoD;AACpD,MAAM,MAAM,cAAc,GAAG,qBAAqB,GAAG;IAAE,UAAU,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC;AAK7E;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA8B5D;AAED,gDAAgD;AAChD,wBAAgB,mBAAmB,IAAI,IAAI,CAG1C;AAYD,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAkBxD;AAED,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,CAS1D;AAmBD,wBAAgB,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,cAAc,CAYrD;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,cAAc,GAAG,IAAI,CAGhD;AAKD;;;GAGG;AACH,wBAAgB,kBAAkB,IAAI,IAAI,CASzC;AAED;;;;;;;;GAQG;AACH,wBAAgB,eAAe,CAAC,EAAE,EAAE,cAAc,GAAG,IAAI,CAmBxD;AAOD,uEAAuE;AACvE,MAAM,WAAW,kBAAkB;IACjC,EAAE,EAAE,cAAc,CAAC;IACnB,QAAQ,CAAC,EAAE,cAAc,CAAC;CAC3B;AAED,4FAA4F;AAC5F,wBAAgB,WAAW,CAAC,IAAI,EAAE,kBAAkB,GAAG,IAAI,CAS1D;AAED,6EAA6E;AAC7E,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,kBAAkB,GAAG,IAAI,CASlE;AAED,wBAAgB,UAAU,CAAC,UAAU,CAAC,EAAE,MAAM,GAAG,MAAM,CA+CtD;AAED,4FAA4F;AAC5F,wBAAgB,kBAAkB,CAAC,UAAU,CAAC,EAAE,MAAM,GAAG,qBAAqB,CAoB7E;AA6BD;;;;;;;GAOG;AACH,wBAAgB,QAAQ,CACtB,YAAY,CAAC,EAAE,MAAM,EACrB,IAAI,GAAE;IAAE,IAAI,CAAC,EAAE,UAAU,CAAC;IAAC,MAAM,CAAC,EAAE,QAAQ,GAAG,MAAM,GAAG,MAAM,CAAA;CAAO,GACpE;IAAE,IAAI,EAAE,UAAU,CAAC;IAAC,KAAK,IAAI,IAAI,CAAA;CAAE,CA4CrC;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,sBAAsB,CACpC,UAAU,CAAC,EAAE,MAAM,EACnB,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,QAAQ,GAAG,MAAM,GAAG,MAAM,CAAA;CAAO,GACjD;IACD,EAAE,EAAE,qBAAqB,CAAC;IAC1B,QAAQ,EAAE,cAAc,GAAG,SAAS,CAAC;IACrC,KAAK,IAAI,IAAI,CAAC;CACf,CAyCA"}

package/dist/db/connection.js

@@ -2,6 +2,7 @@ import { execFileSync } from 'node:child_process';
 import fs from 'node:fs';
 import path from 'node:path';
 import { fileURLToPath } from 'node:url';
+import { loadConfig } from '../infrastructure/config.js';
 import { debug, warn } from '../infrastructure/logger.js';
 import { getNative, isNativeAvailable } from '../infrastructure/native.js';
 import { DbError, toErrorMessage } from '../shared/errors.js';
@@ -352,9 +353,14 @@ export function openRepo(customDbPath, opts = {}) {
         }
         return { repo: opts.repo, close() { } };
     }
-    // Respect explicit engine selection: opts.engine > CODEGRAPH_ENGINE env > auto.
+    // Derive rootDir from customDbPath so loadConfig reads the right project config.
+    // Convention: customDbPath = <rootDir>/.codegraph/graph.db
+    const rootDir = customDbPath ? path.dirname(path.dirname(path.resolve(customDbPath))) : undefined;
+    // Respect explicit engine selection: opts.engine > config.build.engine > auto.
+    // config.build.engine is already populated from CODEGRAPH_ENGINE env by applyEnvOverrides,
+    // so this covers both the env-var path and the .codegraphrc.json config-file path.
     // This ensures --engine wasm and benchmark workers bypass the native path.
-    const engine = opts.engine || process.env.CODEGRAPH_ENGINE || 'auto';
+    const engine = opts.engine ?? loadConfig(rootDir).build.engine ?? 'auto';
     // Try native rusqlite path first (Phase 6.14)
     if (engine !== 'wasm' && isNativeAvailable()) {
         try {
@@ -388,11 +394,20 @@ export function openRepo(customDbPath, opts = {}) {
  * Returns the better-sqlite3 handle (for backwards compat) plus an optional
  * NativeDatabase for modules that can use batched Rust query methods.
  * Callers should use nativeDb when available and fall back to db.prepare().
+ *
+ * @param opts.engine - Per-call engine override: 'native' | 'wasm' | 'auto'.
+ *   When omitted, falls back to config.build.engine then 'auto', mirroring
+ *   the priority chain used by openRepo().
  */
-export function openReadonlyWithNative(customPath) {
+export function openReadonlyWithNative(customPath, opts = {}) {
     const db = openReadonlyOrFail(customPath);
-    // Respect explicit engine selection, consistent with openRepo().
-    const engine = process.env.CODEGRAPH_ENGINE || 'auto';
+    // Derive rootDir from customPath so loadConfig reads the right project config,
+    // consistent with openRepo(). Convention: customPath = <rootDir>/.codegraph/graph.db
+    const rootDir = customPath ? path.dirname(path.dirname(path.resolve(customPath))) : undefined;
+    // Respect explicit engine selection: opts.engine > config.build.engine > auto.
+    // config.build.engine covers both CODEGRAPH_ENGINE env (via applyEnvOverrides)
+    // and the .codegraphrc.json config-file path. Mirrors openRepo() priority chain.
+    const engine = opts.engine ?? loadConfig(rootDir).build.engine ?? 'auto';
     let nativeDb;
     if (engine !== 'wasm' && isNativeAvailable()) {
         try {

package/dist/db/connection.js.map

@@ -1 +1 @@
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package/dist/db/index.d.ts

@@ -2,5 +2,5 @@ export type { LockedDatabase, LockedDatabasePair } from './connection.js';
 export { acquireAdvisoryLock, closeDb, closeDbDeferred, closeDbPair, closeDbPairDeferred, findDbPath, findRepoRoot, flushDeferredClose, openDb, openReadonlyOrFail, openReadonlyWithNative, openRepo, releaseAdvisoryLock, } from './connection.js';
 export { getBuildMeta, initSchema, MIGRATIONS, setBuildMeta } from './migrations.js';
 export { fanInJoinSQL, fanOutJoinSQL, kindInClause, NodeQuery, testFilterSQL, } from './query-builder.js';
-export { bulkNodeIdsByFile, countCrossFileCallers, countEdges, countFiles, countNodes, deleteCfgForNode, findAllIncomingEdges, findAllOutgoingEdges, findCalleeNames, findCallees, findCallerNames, findCallers, findCrossFileCallTargets, findDistinctCallers, findFileNodes, findImplementors, findImportDependents, findImportSources, findImportTargets, findInterfaces, findIntraFileCallEdges, findNodeById, findNodeByQualifiedName, findNodeChildren, findNodesByFile, findNodesByScope, findNodesForTriage, findNodesWithFanIn, getCallableNodes, getCallEdges, getCfgBlocks, getCfgEdges, getClassHierarchy, getCoChangeMeta, getComplexityForNode, getEmbeddingCount, getEmbeddingMeta, getFileNodesAll, getFunctionNodeId, getImportEdges, getLineCountForNode, getMaxEndLineForFile, getNodeId, hasCfgTables, hasCoChanges, hasDataflowTable, hasEmbeddings, InMemoryRepository, iterateFunctionNodes, listFunctionNodes, purgeFileData, purgeFilesData, Repository, SqliteRepository, upsertCoChangeMeta, } from './repository/index.js';
+export { bulkNodeIdsByFile, countCrossFileCallers, countEdges, countFiles, countNodes, deleteCfgForNode, findAllIncomingEdges, findAllOutgoingEdges, findCalleeNames, findCallees, findCallerNames, findCallers, findCrossFileCallTargets, findDistinctCallers, findFileNodes, findImplementors, findImportDependents, findImportSources, findImportTargets, findInterfaces, findIntraFileCallEdges, findNodeById, findNodeByQualifiedName, findNodeChildren, findNodesByFile, findNodesByScope, findNodesForTriage, findNodesWithFanIn, getCallableNodes, getCallEdges, getCfgBlocks, getCfgEdges, getClassHierarchy, getCoChangeMeta, getComplexityForNode, getEmbeddingCount, getEmbeddingMeta, getFileNodesAll, getFunctionNodeId, getImportEdges, getLineCountForNode, getMaxEndLineForFile, getNodeId, hasCfgTables, hasCoChanges, hasDataflowTable, hasDataflowVertices, hasEmbeddings, InMemoryRepository, iterateFunctionNodes, listFunctionNodes, purgeFileData, purgeFilesData, Repository, SqliteRepository, upsertCoChangeMeta, } from './repository/index.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/db/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/db/index.ts"],"names":[],"mappings":"AAEA,YAAY,EAAE,cAAc,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAC1E,OAAO,EACL,mBAAmB,EACnB,OAAO,EACP,eAAe,EACf,WAAW,EACX,mBAAmB,EACnB,UAAU,EACV,YAAY,EACZ,kBAAkB,EAClB,MAAM,EACN,kBAAkB,EAClB,sBAAsB,EACtB,QAAQ,EACR,mBAAmB,GACpB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAAE,YAAY,EAAE,UAAU,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AACrF,OAAO,EACL,YAAY,EACZ,aAAa,EACb,YAAY,EACZ,SAAS,EACT,aAAa,GACd,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACL,iBAAiB,EACjB,qBAAqB,EACrB,UAAU,EACV,UAAU,EACV,UAAU,EACV,gBAAgB,EAChB,oBAAoB,EACpB,oBAAoB,EACpB,eAAe,EACf,WAAW,EACX,eAAe,EACf,WAAW,EACX,wBAAwB,EACxB,mBAAmB,EACnB,aAAa,EACb,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,EACjB,cAAc,EACd,sBAAsB,EACtB,YAAY,EACZ,uBAAuB,EACvB,gBAAgB,EAChB,eAAe,EACf,gBAAgB,EAChB,kBAAkB,EAClB,kBAAkB,EAClB,gBAAgB,EAChB,YAAY,EACZ,YAAY,EACZ,WAAW,EACX,iBAAiB,EACjB,eAAe,EACf,oBAAoB,EACpB,iBAAiB,EACjB,gBAAgB,EAChB,eAAe,EACf,iBAAiB,EACjB,cAAc,EACd,mBAAmB,EACnB,oBAAoB,EACpB,SAAS,EACT,YAAY,EACZ,YAAY,EACZ,gBAAgB,EAChB,mBAAmB,EACnB,aAAa,EACb,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,aAAa,EACb,cAAc,EACd,UAAU,EACV,gBAAgB,EAChB,kBAAkB,GACnB,MAAM,uBAAuB,CAAC"}

package/dist/db/index.js

@@ -2,5 +2,5 @@
 export { acquireAdvisoryLock, closeDb, closeDbDeferred, closeDbPair, closeDbPairDeferred, findDbPath, findRepoRoot, flushDeferredClose, openDb, openReadonlyOrFail, openReadonlyWithNative, openRepo, releaseAdvisoryLock, } from './connection.js';
 export { getBuildMeta, initSchema, MIGRATIONS, setBuildMeta } from './migrations.js';
 export { fanInJoinSQL, fanOutJoinSQL, kindInClause, NodeQuery, testFilterSQL, } from './query-builder.js';
-export { bulkNodeIdsByFile, countCrossFileCallers, countEdges, countFiles, countNodes, deleteCfgForNode, findAllIncomingEdges, findAllOutgoingEdges, findCalleeNames, findCallees, findCallerNames, findCallers, findCrossFileCallTargets, findDistinctCallers, findFileNodes, findImplementors, findImportDependents, findImportSources, findImportTargets, findInterfaces, findIntraFileCallEdges, findNodeById, findNodeByQualifiedName, findNodeChildren, findNodesByFile, findNodesByScope, findNodesForTriage, findNodesWithFanIn, getCallableNodes, getCallEdges, getCfgBlocks, getCfgEdges, getClassHierarchy, getCoChangeMeta, getComplexityForNode, getEmbeddingCount, getEmbeddingMeta, getFileNodesAll, getFunctionNodeId, getImportEdges, getLineCountForNode, getMaxEndLineForFile, getNodeId, hasCfgTables, hasCoChanges, hasDataflowTable, hasEmbeddings, InMemoryRepository, iterateFunctionNodes, listFunctionNodes, purgeFileData, purgeFilesData, Repository, SqliteRepository, upsertCoChangeMeta, } from './repository/index.js';
+export { bulkNodeIdsByFile, countCrossFileCallers, countEdges, countFiles, countNodes, deleteCfgForNode, findAllIncomingEdges, findAllOutgoingEdges, findCalleeNames, findCallees, findCallerNames, findCallers, findCrossFileCallTargets, findDistinctCallers, findFileNodes, findImplementors, findImportDependents, findImportSources, findImportTargets, findInterfaces, findIntraFileCallEdges, findNodeById, findNodeByQualifiedName, findNodeChildren, findNodesByFile, findNodesByScope, findNodesForTriage, findNodesWithFanIn, getCallableNodes, getCallEdges, getCfgBlocks, getCfgEdges, getClassHierarchy, getCoChangeMeta, getComplexityForNode, getEmbeddingCount, getEmbeddingMeta, getFileNodesAll, getFunctionNodeId, getImportEdges, getLineCountForNode, getMaxEndLineForFile, getNodeId, hasCfgTables, hasCoChanges, hasDataflowTable, hasDataflowVertices, hasEmbeddings, InMemoryRepository, iterateFunctionNodes, listFunctionNodes, purgeFileData, purgeFilesData, Repository, SqliteRepository, upsertCoChangeMeta, } from './repository/index.js';
 //# sourceMappingURL=index.js.map

package/dist/db/index.js.map

@@ -1 +1 @@
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package/dist/db/migrations.d.ts.map

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package/dist/db/migrations.js

@@ -1,5 +1,5 @@
 import { debug } from '../infrastructure/logger.js';
-// IMPORTANT: Migration DDL is mirrored in crates/codegraph-core/src/native_db.rs.
+// IMPORTANT: Migration DDL is mirrored in crates/codegraph-core/src/db/connection.rs.
 // Any changes here MUST be reflected there (and vice-versa).
 export const MIGRATIONS = [
     {
@@ -254,6 +254,74 @@ export const MIGRATIONS = [
       CREATE INDEX IF NOT EXISTS idx_edges_technique ON edges(technique);
     `,
     },
+    {
+        version: 18,
+        up: `
+      CREATE TABLE IF NOT EXISTS dataflow_vertices (
+        id          INTEGER PRIMARY KEY AUTOINCREMENT,
+        func_id     INTEGER NOT NULL REFERENCES nodes(id),
+        kind        TEXT NOT NULL,
+        name        TEXT,
+        param_index INTEGER,
+        line        INTEGER,
+        node_id     INTEGER REFERENCES nodes(id)
+      );
+      CREATE INDEX IF NOT EXISTS idx_dfv_func ON dataflow_vertices(func_id);
+      CREATE INDEX IF NOT EXISTS idx_dfv_func_kind ON dataflow_vertices(func_id, kind);
+      CREATE INDEX IF NOT EXISTS idx_dfv_node ON dataflow_vertices(node_id);
+
+      ALTER TABLE dataflow ADD COLUMN source_vertex INTEGER REFERENCES dataflow_vertices(id);
+      ALTER TABLE dataflow ADD COLUMN target_vertex INTEGER REFERENCES dataflow_vertices(id);
+      ALTER TABLE dataflow ADD COLUMN scope TEXT;
+      ALTER TABLE dataflow ADD COLUMN call_edge_id INTEGER REFERENCES edges(id);
+
+      CREATE INDEX IF NOT EXISTS idx_dataflow_sv ON dataflow(source_vertex);
+      CREATE INDEX IF NOT EXISTS idx_dataflow_tv ON dataflow(target_vertex);
+      CREATE INDEX IF NOT EXISTS idx_dataflow_scope ON dataflow(scope);
+
+      CREATE TABLE IF NOT EXISTS dataflow_summary (
+        func_id     INTEGER NOT NULL REFERENCES nodes(id),
+        param_index INTEGER NOT NULL,
+        flows_to_return INTEGER NOT NULL DEFAULT 0,
+        is_mutated  INTEGER NOT NULL DEFAULT 0,
+        PRIMARY KEY(func_id, param_index)
+      );
+      CREATE INDEX IF NOT EXISTS idx_dfs_func ON dataflow_summary(func_id);
+
+      -- dataflow_fn exposes only vertex-linked (v18+) interprocedural flows.
+      -- The INNER JOINs intentionally exclude pre-v18 rows where source_vertex
+      -- and target_vertex are NULL — this is NOT a backward-compat replacement
+      -- for querying the dataflow table directly; legacy consumers must continue
+      -- to query dataflow directly to avoid silently dropping historical rows.
+      CREATE VIEW IF NOT EXISTS dataflow_fn AS
+        SELECT
+          sv.func_id AS source_id,
+          tv.func_id AS target_id,
+          d.kind,
+          d.param_index,
+          d.expression,
+          d.line,
+          d.confidence
+        FROM dataflow d
+        JOIN dataflow_vertices sv ON d.source_vertex = sv.id
+        JOIN dataflow_vertices tv ON d.target_vertex = tv.id
+        WHERE sv.func_id != tv.func_id;
+    `,
+    },
+    {
+        version: 19,
+        // P6 sentinel: forces a full rebuild so that databases built with the native
+        // fast path (which skipped vertex extraction before P6) backfill
+        // dataflow_vertices and dataflow_summary on the next `codegraph build`.
+        up: `SELECT 1`,
+    },
+    {
+        version: 20,
+        up: `
+      ALTER TABLE edges ADD COLUMN dynamic_kind TEXT;
+      CREATE INDEX IF NOT EXISTS idx_edges_dynamic_kind ON edges(dynamic_kind) WHERE dynamic_kind IS NOT NULL;
+    `,
+    },
 ];
 function hasColumn(db, table, column) {
     const cols = db.pragma(`table_info(${table})`);

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+{"version":3,"file":"migrations.js","sourceRoot":"","sources":["../../src/db/migrations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,6BAA6B,CAAC;AAUpD,sFAAsF;AACtF,6DAA6D;AAC7D,MAAM,CAAC,MAAM,UAAU,GAAgB;IACrC;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAuCH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;KAKH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;;KAMH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE,4DAA4D;KACjE;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;;;;;;;;;;;;;KAiBH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;KAKH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;KAKH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;;;;;;KAUH;KACF;IACD;QACE,OAAO,EAAE,CAAC;QACV,EAAE,EAAE;;;;;;;;;;;;;;;;KAgBH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;;;;;;;;;;;;;;;KAiBH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;;KAIH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;;;;;;;;;;;;;;;;;;;;;;;;;KA2BH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;;;;;;;;;;;;;;;KAiBH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;KAGH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;;;;;KAOH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;KAGH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;KAGH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAkDH;KACF;IACD;QACE,OAAO,EAAE,EAAE;QACX,6EAA6E;QAC7E,iEAAiE;QACjE,wEAAwE;QACxE,EAAE,EAAE,UAAU;KACf;IACD;QACE,OAAO,EAAE,EAAE;QACX,EAAE,EAAE;;;KAGH;KACF;CACF,CAAC;AAUF,SAAS,SAAS,CAAC,EAAyB,EAAE,KAAa,EAAE,MAAc;IACzE,MAAM,IAAI,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,KAAK,GAAG,CAAuB,CAAC;IACrE,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,CAAC;AAC7C,CAAC;AAED,SAAS,QAAQ,CAAC,EAAyB,EAAE,KAAa;IACxD,MAAM,GAAG,GAAG,EAAE;SACX,OAAO,CAAkB,2DAA2D,CAAC;SACrF,GAAG,CAAC,KAAK,CAAC,CAAC;IACd,OAAO,CAAC,CAAC,GAAG,CAAC;AACf,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,EAAyB,EAAE,GAAW;IACjE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,YAAY,CAAC;QAAE,OAAO,IAAI,CAAC;IAC7C,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,EAAE;aACX,OAAO,CAAoB,4CAA4C,CAAC;aACxE,GAAG,CAAC,GAAG,CAAC,CAAC;QACZ,OAAO,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC;IAChC,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,KAAK,CAAC,gCAAgC,GAAG,MAAO,CAAW,CAAC,OAAO,EAAE,CAAC,CAAC;QACvE,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,UAAU,YAAY,CAC1B,EAAyB,EACzB,OAAwC;IAExC,MAAM,MAAM,GAAG,EAAE,CAAC,OAAO,CAAC,8DAA8D,CAAC,CAAC;IAC1F,MAAM,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE;QAC7B,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;YACnD,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC;QACjC,CAAC;IACH,CAAC,CAAC,CAAC;IACH,EAAE,EAAE,CAAC;AACP,CAAC;AAED,6DAA6D;AAC7D,SAAS,eAAe,CAAC,EAAyB;IAChD,EAAE,CAAC,IAAI,CAAC,gFAAgF,CAAC,CAAC;IAE1F,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAsB,oCAAoC,CAAC,CAAC,GAAG,EAAE,CAAC;IACxF,IAAI,cAAc,GAAG,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IAE3C,IAAI,CAAC,GAAG,EAAE,CAAC;QACT,EAAE,CAAC,OAAO,CAAC,iDAAiD,CAAC,CAAC,GAAG,EAAE,CAAC;IACtE,CAAC;IAED,KAAK,MAAM,SAAS,IAAI,UAAU,EAAE,CAAC;QACnC,IAAI,SAAS,CAAC,OAAO,GAAG,cAAc,EAAE,CAAC;YACvC,KAAK,CAAC,sBAAsB,SAAS,CAAC,OAAO,EAAE,CAAC,CAAC;YACjD,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC;YACtB,EAAE,CAAC,OAAO,CAAC,uCAAuC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC;YAC3E,cAAc,GAAG,SAAS,CAAC,OAAO,CAAC;QACrC,CAAC;IACH,CAAC;AACH,CAAC;AAED,8EAA8E;AAC9E,SAAS,mBAAmB,CAAC,EAAyB;IACpD,IAAI,QAAQ,CAAC,EAAE,EAAE,OAAO,CAAC,EAAE,CAAC;QAC1B,iBAAiB,CAAC,EAAE,CAAC,CAAC;IACxB,CAAC;IACD,IAAI,QAAQ,CAAC,EAAE,EAAE,OAAO,CAAC,EAAE,CAAC;QAC1B,iBAAiB,CAAC,EAAE,CAAC,CAAC;IACxB,CAAC;AACH,CAAC;AAED,SAAS,iBAAiB,CAAC,EAAyB;IAClD,MAAM,OAAO,GAAG,CAAC,GAAW,EAAE,EAAE,CAAC,CAAC,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,GAAG,CAAC,CAAC;IAC9D,IAAI,OAAO,CAAC,UAAU,CAAC;QAAE,EAAE,CAAC,IAAI,CAAC,+CAA+C,CAAC,CAAC;IAClF,IAAI,OAAO,CAAC,MAAM,CAAC;QAAE,EAAE,CAAC,IAAI,CAAC,wCAAwC,CAAC,CAAC;IACvE,EAAE,CAAC,IAAI,CAAC,0DAA0D,CAAC,CAAC;IACpE,IAAI,OAAO,CAAC,WAAW,CAAC;QACtB,EAAE,CAAC,IAAI,CAAC,qEAAqE,CAAC,CAAC;IACjF,EAAE,CAAC,IAAI,CAAC,iEAAiE,CAAC,CAAC;IAC3E,EAAE,CAAC,IAAI,CAAC,4EAA4E,CAAC,CAAC;IACtF,IAAI,OAAO,CAAC,gBAAgB,CAAC;QAAE,EAAE,CAAC,IAAI,CAAC,kDAAkD,CAAC,CAAC;IAC3F,IAAI,OAAO,CAAC,OAAO,CAAC;QAAE,EAAE,CAAC,IAAI,CAAC,yCAAyC,CAAC,CAAC;IACzE,IAAI,OAAO,CAAC,YAAY,CAAC;QAAE,EAAE,CAAC,IAAI,CAAC,8CAA8C,CAAC,CAAC;IACnF,EAAE,CAAC,IAAI,CAAC,qEAAqE,CAAC,CAAC;IAC/E,EAAE,CAAC,IAAI,CAAC,8EAA8E,CAAC,CAAC;IACxF,EAAE,CAAC,IAAI,CAAC,4DAA4D,CAAC,CAAC;AACxE,CAAC;AAED,SAAS,iBAAiB,CAAC,EAAyB;IAClD,IAAI,CAAC,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,YAAY,CAAC;QACvC,EAAE,CAAC,IAAI,CAAC,0DAA0D,CAAC,CAAC;IACtE,IAAI,CAAC,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,SAAS,CAAC;QACpC,EAAE,CAAC,IAAI,CAAC,wDAAwD,CAAC,CAAC;AACtE,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,EAAyB;IAClD,eAAe,CAAC,EAAE,CAAC,CAAC;IACpB,mBAAmB,CAAC,EAAE,CAAC,CAAC;AAC1B,CAAC"}

package/dist/db/repository/build-stmts.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"build-stmts.d.ts","sourceRoot":"","sources":["../../../src/db/repository/build-stmts.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,qBAAqB,EAAmB,MAAM,gBAAgB,CAAC;AAe7E,UAAU,SAAS;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AA6CD;;;GAGG;AACH,wBAAgB,aAAa,CAAC,EAAE,EAAE,qBAAqB,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE,SAAc,GAAG,IAAI,CAGjG;AA0BD;;;GAGG;AACH,wBAAgB,cAAc,CAC5B,EAAE,EAAE,qBAAqB,EACzB,KAAK,EAAE,MAAM,EAAE,EACf,IAAI,GAAE,SAAc,GACnB,IAAI,CAMN"}
+{"version":3,"file":"build-stmts.d.ts","sourceRoot":"","sources":["../../../src/db/repository/build-stmts.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,qBAAqB,EAAmB,MAAM,gBAAgB,CAAC;AAmB7E,UAAU,SAAS;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AAiED;;;GAGG;AACH,wBAAgB,aAAa,CAAC,EAAE,EAAE,qBAAqB,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE,SAAc,GAAG,IAAI,CAGjG;AAgCD;;;GAGG;AACH,wBAAgB,cAAc,CAC5B,EAAE,EAAE,qBAAqB,EACzB,KAAK,EAAE,MAAM,EAAE,EACf,IAAI,GAAE,SAAc,GACnB,IAAI,CAMN"}

package/dist/db/repository/build-stmts.js

@@ -17,6 +17,18 @@ function preparePurgeStmts(db) {
         cfgEdges: tryPrepare('DELETE FROM cfg_edges WHERE function_node_id IN (SELECT id FROM nodes WHERE file = ?)'),
         cfgBlocks: tryPrepare('DELETE FROM cfg_blocks WHERE function_node_id IN (SELECT id FROM nodes WHERE file = ?)'),
         dataflow: tryPrepare('DELETE FROM dataflow WHERE source_id IN (SELECT id FROM nodes WHERE file = ?) OR target_id IN (SELECT id FROM nodes WHERE file = ?)'),
+        dataflowByVertex: tryPrepare(`DELETE FROM dataflow WHERE source_vertex IN (SELECT id FROM dataflow_vertices WHERE func_id IN (SELECT id FROM nodes WHERE file = ?))
+         OR target_vertex IN (SELECT id FROM dataflow_vertices WHERE func_id IN (SELECT id FROM nodes WHERE file = ?))`),
+        // Delete dataflow rows whose call_edge_id references a calls edge that
+        // touches the deleted file (source or target). These rows are not caught by
+        // the source_id/target_id or vertex-based deletions above when the dataflow
+        // row's own nodes live in other files. Must run before the edges delete to
+        // avoid SQLITE_CONSTRAINT_FOREIGNKEY: dataflow.call_edge_id REFERENCES edges(id).
+        dataflowByCallEdge: tryPrepare(`DELETE FROM dataflow WHERE call_edge_id IN
+         (SELECT id FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file = @f)
+          OR target_id IN (SELECT id FROM nodes WHERE file = @f))`),
+        dataflowSummary: tryPrepare('DELETE FROM dataflow_summary WHERE func_id IN (SELECT id FROM nodes WHERE file = ?)'),
+        dataflowVertices: tryPrepare('DELETE FROM dataflow_vertices WHERE func_id IN (SELECT id FROM nodes WHERE file = ?)'),
         complexity: tryPrepare('DELETE FROM function_complexity WHERE node_id IN (SELECT id FROM nodes WHERE file = ?)'),
         nodeMetrics: tryPrepare('DELETE FROM node_metrics WHERE node_id IN (SELECT id FROM nodes WHERE file = ?)'),
         astNodes: tryPrepare('DELETE FROM ast_nodes WHERE file = ?'),
@@ -44,6 +56,12 @@ function runPurge(stmts, file, opts = {}) {
     stmts.cfgEdges?.run(file);
     stmts.cfgBlocks?.run(file);
     stmts.dataflow?.run(file, file);
+    stmts.dataflowByVertex?.run(file, file);
+    // Clear dataflow rows keyed by call_edge_id before deleting edges so the FK
+    // (dataflow.call_edge_id REFERENCES edges(id)) does not block the edge purge.
+    stmts.dataflowByCallEdge?.run({ f: file });
+    stmts.dataflowSummary?.run(file);
+    stmts.dataflowVertices?.run(file);
     stmts.complexity?.run(file);
     stmts.nodeMetrics?.run(file);
     stmts.astNodes?.run(file);

package/dist/db/repository/build-stmts.js.map

@@ -1 +1 @@
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package/dist/db/repository/dataflow.d.ts

@@ -3,4 +3,9 @@ import type { BetterSqlite3Database } from '../../types.js';
  * Check whether the dataflow table exists and has data.
  */
 export declare function hasDataflowTable(db: BetterSqlite3Database): boolean;
+/**
+ * Check whether the dataflow_vertices table exists and has data.
+ * Returns false on DBs built before migration v18.
+ */
+export declare function hasDataflowVertices(db: BetterSqlite3Database): boolean;
 //# sourceMappingURL=dataflow.d.ts.map

package/dist/db/repository/dataflow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dataflow.d.ts","sourceRoot":"","sources":["../../../src/db/repository/dataflow.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,qBAAqB,EAAa,MAAM,gBAAgB,CAAC;AAMvE;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,qBAAqB,GAAG,OAAO,CASnE"}
+{"version":3,"file":"dataflow.d.ts","sourceRoot":"","sources":["../../../src/db/repository/dataflow.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,qBAAqB,EAAa,MAAM,gBAAgB,CAAC;AAOvE;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,qBAAqB,GAAG,OAAO,CASnE;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,EAAE,EAAE,qBAAqB,GAAG,OAAO,CAStE"}

package/dist/db/repository/dataflow.js

@@ -1,6 +1,7 @@
 import { cachedStmt } from './cached-stmt.js';
 // ─── Statement caches (one prepared statement per db instance) ────────────
 const _hasDataflowTableStmt = new WeakMap();
+const _hasDataflowVerticesStmt = new WeakMap();
 /**
  * Check whether the dataflow table exists and has data.
  */
@@ -13,4 +14,17 @@ export function hasDataflowTable(db) {
         return false;
     }
 }
+/**
+ * Check whether the dataflow_vertices table exists and has data.
+ * Returns false on DBs built before migration v18.
+ */
+export function hasDataflowVertices(db) {
+    try {
+        return ((cachedStmt(_hasDataflowVerticesStmt, db, 'SELECT COUNT(*) AS c FROM dataflow_vertices').get()
+            ?.c ?? 0) > 0);
+    }
+    catch {
+        return false;
+    }
+}
 //# sourceMappingURL=dataflow.js.map

package/dist/db/repository/dataflow.js.map

@@ -1 +1 @@
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package/dist/db/repository/index.d.ts

@@ -5,7 +5,7 @@ export { cachedStmt } from './cached-stmt.js';
 export { deleteCfgForNode, getCfgBlocks, getCfgEdges, hasCfgTables } from './cfg.js';
 export { getCoChangeMeta, hasCoChanges, upsertCoChangeMeta } from './cochange.js';
 export { getComplexityForNode } from './complexity.js';
-export { hasDataflowTable } from './dataflow.js';
+export { hasDataflowTable, hasDataflowVertices } from './dataflow.js';
 export { countCrossFileCallers, findAllIncomingEdges, findAllOutgoingEdges, findCalleeNames, findCallees, findCallerNames, findCallers, findCrossFileCallTargets, findDistinctCallers, findImplementors, findImportDependents, findImportSources, findImportTargets, findInterfaces, findIntraFileCallEdges, getClassHierarchy, } from './edges.js';
 export { getEmbeddingCount, getEmbeddingMeta, hasEmbeddings } from './embeddings.js';
 export { getCallableNodes, getCallEdges, getFileNodesAll, getImportEdges } from './graph-read.js';

package/dist/db/repository/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/db/repository/index.ts"],"names":[],"mappings":"AAEA,YAAY,EAAE,gBAAgB,EAAE,WAAW,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,WAAW,CAAC;AACzF,OAAO,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACvC,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAE,gBAAgB,EAAE,YAAY,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,UAAU,CAAC;AACrF,OAAO,EAAE,eAAe,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAClF,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAC;AACvD,OAAO,EAAE,gBAAgB,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAC;AACtE,OAAO,EACL,qBAAqB,EACrB,oBAAoB,EACpB,oBAAoB,EACpB,eAAe,EACf,WAAW,EACX,eAAe,EACf,WAAW,EACX,wBAAwB,EACxB,mBAAmB,EACnB,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,EACjB,cAAc,EACd,sBAAsB,EACtB,iBAAiB,GAClB,MAAM,YAAY,CAAC;AACpB,OAAO,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AACrF,OAAO,EAAE,gBAAgB,EAAE,YAAY,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AAClG,OAAO,EAAE,kBAAkB,EAAE,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAC1D,OAAO,EACL,iBAAiB,EACjB,UAAU,EACV,UAAU,EACV,UAAU,EACV,aAAa,EACb,YAAY,EACZ,uBAAuB,EACvB,gBAAgB,EAChB,eAAe,EACf,gBAAgB,EAChB,kBAAkB,EAClB,kBAAkB,EAClB,iBAAiB,EACjB,mBAAmB,EACnB,oBAAoB,EACpB,SAAS,EACT,oBAAoB,EACpB,iBAAiB,GAClB,MAAM,YAAY,CAAC;AACpB,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC"}

package/dist/db/repository/index.js

@@ -5,7 +5,7 @@ export { cachedStmt } from './cached-stmt.js';
 export { deleteCfgForNode, getCfgBlocks, getCfgEdges, hasCfgTables } from './cfg.js';
 export { getCoChangeMeta, hasCoChanges, upsertCoChangeMeta } from './cochange.js';
 export { getComplexityForNode } from './complexity.js';
-export { hasDataflowTable } from './dataflow.js';
+export { hasDataflowTable, hasDataflowVertices } from './dataflow.js';
 export { countCrossFileCallers, findAllIncomingEdges, findAllOutgoingEdges, findCalleeNames, findCallees, findCallerNames, findCallers, findCrossFileCallTargets, findDistinctCallers, findImplementors, findImportDependents, findImportSources, findImportTargets, findInterfaces, findIntraFileCallEdges, getClassHierarchy, } from './edges.js';
 export { getEmbeddingCount, getEmbeddingMeta, hasEmbeddings } from './embeddings.js';
 export { getCallableNodes, getCallEdges, getFileNodesAll, getImportEdges } from './graph-read.js';

package/dist/db/repository/index.js.map

@@ -1 +1 @@
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package/dist/db/repository/native-repository.d.ts.map

@@ -1 +1 @@
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package/dist/db/repository/native-repository.js

@@ -105,6 +105,52 @@ function toComplexityMetrics(r) {
         halstead_volume: r.halsteadVolume ?? null,
     };
 }
+// ── fnDeps conversion helpers ────────────────────────────────────────────
+/**
+ * Convert a native transitive-callers array (array of `{ depth, callers[] }`)
+ * into the JS `Record<number, FnDepsNode[]>` shape the Repository interface expects.
+ */
+function mapTransitiveCallers(groups) {
+    const result = {};
+    for (const group of groups ?? []) {
+        result[group.depth] = (group.callers ?? []).map((c) => ({
+            name: c.name,
+            kind: c.kind,
+            file: c.file,
+            line: c.line ?? null,
+        }));
+    }
+    return result;
+}
+/**
+ * Convert a single raw native fnDeps entry into the typed `FnDepsEntry` shape.
+ * Handles napi-rs camelCase → Repository snake_case field aliasing.
+ */
+function mapFnDepsEntry(entry) {
+    return {
+        name: entry.name,
+        kind: entry.kind,
+        file: entry.file,
+        line: entry.line ?? null,
+        endLine: entry.endLine ?? entry.end_line ?? null,
+        role: entry.role ?? null,
+        fileHash: entry.fileHash ?? entry.file_hash ?? null,
+        callees: (entry.callees ?? []).map((c) => ({
+            name: c.name,
+            kind: c.kind,
+            file: c.file,
+            line: c.line ?? null,
+        })),
+        callers: (entry.callers ?? []).map((c) => ({
+            name: c.name,
+            kind: c.kind,
+            file: c.file,
+            line: c.line ?? null,
+            viaHierarchy: c.viaHierarchy ?? c.via_hierarchy ?? undefined,
+        })),
+        transitiveCallers: mapTransitiveCallers(entry.transitiveCallers),
+    };
+}
 // ── NativeRepository ────────────────────────────────────────────────────
 export class NativeRepository extends Repository {
     #ndb;
@@ -365,40 +411,7 @@ export class NativeRepository extends Repository {
         // to JS format (transitiveCallers as Record<number, Array>)
         return {
             name: raw.name,
-            results: raw.results.map((entry) => {
-                const transitiveCallers = {};
-                for (const group of entry.transitiveCallers ?? []) {
-                    transitiveCallers[group.depth] = (group.callers ?? []).map((c) => ({
-                        name: c.name,
-                        kind: c.kind,
-                        file: c.file,
-                        line: c.line ?? null,
-                    }));
-                }
-                return {
-                    name: entry.name,
-                    kind: entry.kind,
-                    file: entry.file,
-                    line: entry.line ?? null,
-                    endLine: entry.endLine ?? entry.end_line ?? null,
-                    role: entry.role ?? null,
-                    fileHash: entry.fileHash ?? entry.file_hash ?? null,
-                    callees: (entry.callees ?? []).map((c) => ({
-                        name: c.name,
-                        kind: c.kind,
-                        file: c.file,
-                        line: c.line ?? null,
-                    })),
-                    callers: (entry.callers ?? []).map((c) => ({
-                        name: c.name,
-                        kind: c.kind,
-                        file: c.file,
-                        line: c.line ?? null,
-                        viaHierarchy: c.viaHierarchy ?? c.via_hierarchy ?? undefined,
-                    })),
-                    transitiveCallers,
-                };
-            }),
+            results: raw.results.map(mapFnDepsEntry),
         };
     }
 }

package/dist/db/repository/native-repository.js.map

@@ -1 +1 @@
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