@optave/codegraph 3.12.0 → 3.15.0

package/dist/graph/algorithms/bfs.js

@@ -1,8 +1,16 @@
 import { loadNative } from '../../infrastructure/native.js';
+/** Resolve the neighbor list for a node given traversal direction. */
+function getNeighbors(graph, node, direction) {
+    if (direction === 'forward')
+        return graph.successors(node);
+    if (direction === 'backward')
+        return graph.predecessors(node);
+    return graph.neighbors(node);
+}
 /**
  * Breadth-first traversal on a CodeGraph.
  *
- * Tries the native Rust implementation first, falls back to JS.
+ * Tries the native Rust implementation first, falls back to a pure-JS queue.
  *
  * @returns nodeId → depth from nearest start node
  */
@@ -32,7 +40,10 @@ export function bfs(graph, startIds, opts = {}) {
     }
     return bfsJS(graph, starts, maxDepth, direction);
 }
-/** Pure JS fallback for BFS (used when native addon is unavailable). */
+/**
+ * Pure-JS BFS queue (used when native addon is unavailable).
+ * Separated from bfs() to keep each function's complexity within thresholds.
+ */
 function bfsJS(graph, starts, maxDepth, direction) {
     const depths = new Map();
     const queue = [];
@@ -49,17 +60,7 @@ function bfsJS(graph, starts, maxDepth, direction) {
         const depth = depths.get(current);
         if (depth >= maxDepth)
             continue;
-        let neighbors;
-        if (direction === 'forward') {
-            neighbors = graph.successors(current);
-        }
-        else if (direction === 'backward') {
-            neighbors = graph.predecessors(current);
-        }
-        else {
-            neighbors = graph.neighbors(current);
-        }
-        for (const n of neighbors) {
+        for (const n of getNeighbors(graph, current, direction)) {
             if (!depths.has(n)) {
                 depths.set(n, depth + 1);
                 queue.push(n);

package/dist/graph/algorithms/bfs.js.map

@@ -1 +1 @@
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+{"version":3,"file":"bfs.js","sourceRoot":"","sources":["../../../src/graph/algorithms/bfs.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,gCAAgC,CAAC;AAQ5D,sEAAsE;AACtE,SAAS,YAAY,CAAC,KAAgB,EAAE,IAAY,EAAE,SAAiB;IACrE,IAAI,SAAS,KAAK,SAAS;QAAE,OAAO,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;IAC3D,IAAI,SAAS,KAAK,UAAU;QAAE,OAAO,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC;IAC9D,OAAO,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;AAC/B,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,GAAG,CACjB,KAAgB,EAChB,QAA2B,EAC3B,OAAgB,EAAE;IAElB,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,IAAI,QAAQ,CAAC;IAC3C,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,SAAS,CAAC;IAC9C,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC;IAE/D,MAAM,MAAM,GAAG,UAAU,EAAE,CAAC;IAC5B,IAAI,MAAM,EAAE,YAAY,EAAE,CAAC;QACzB,MAAM,KAAK,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC;QAClC,MAAM,cAAc,GAAG,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC;QAC/D,mFAAmF;QACnF,uEAAuE;QACvE,MAAM,eAAe,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC;QAC7D,MAAM,MAAM,GAAG,MAAM,CAAC,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,cAAc,EAAE,eAAe,CAAC,CAAC;QACnF,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAC;QACzC,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;YAC3B,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC;QACtC,CAAC;QACD,wFAAwF;QACxF,KAAK,MAAM,OAAO,IAAI,MAAM,EAAE,CAAC;YAC7B,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;gBACnD,MAAM,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;YACzB,CAAC;QACH,CAAC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,OAAO,KAAK,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAC;AACnD,CAAC;AAED;;;GAGG;AACH,SAAS,KAAK,CACZ,KAAgB,EAChB,MAAgB,EAChB,QAAgB,EAChB,SAAiB;IAEjB,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAC;IACzC,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,MAAM,EAAE,IAAI,MAAM,EAAE,CAAC;QACxB,MAAM,GAAG,GAAG,MAAM,CAAC,EAAE,CAAC,CAAC;QACvB,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YACvB,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC;YACnB,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAClB,CAAC;IACH,CAAC;IAED,IAAI,IAAI,GAAG,CAAC,CAAC;IACb,OAAO,IAAI,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC;QAC3B,MAAM,OAAO,GAAG,KAAK,CAAC,IAAI,EAAE,CAAE,CAAC;QAC/B,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC;QACnC,IAAI,KAAK,IAAI,QAAQ;YAAE,SAAS;QAEhC,KAAK,MAAM,CAAC,IAAI,YAAY,CAAC,KAAK,EAAE,OAAO,EAAE,SAAS,CAAC,EAAE,CAAC;YACxD,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;gBACnB,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;gBACzB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAChB,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/graph/algorithms/tarjan.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tarjan.d.ts","sourceRoot":"","sources":["../../../src/graph/algorithms/tarjan.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,SAAS,GAAG,MAAM,EAAE,EAAE,CAyCnD"}
+{"version":3,"file":"tarjan.d.ts","sourceRoot":"","sources":["../../../src/graph/algorithms/tarjan.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,SAAS,GAAG,MAAM,EAAE,EAAE,CA8CnD"}

package/dist/graph/algorithms/tarjan.js

@@ -12,6 +12,7 @@ export function tarjan(graph) {
     const lowlinks = new Map();
     const sccs = [];
     function strongconnect(v) {
+        // Assign the next discovery index and initialise lowlink to self
         indices.set(v, index);
         lowlinks.set(v, index);
         index++;
@@ -19,13 +20,16 @@ export function tarjan(graph) {
         onStack.add(v);
         for (const w of graph.successors(v)) {
             if (!indices.has(w)) {
+                // Tree edge: recurse then propagate lowlink upward
                 strongconnect(w);
                 lowlinks.set(v, Math.min(lowlinks.get(v), lowlinks.get(w)));
             }
             else if (onStack.has(w)) {
+                // Back/cross edge to a node still on the stack: update lowlink via index
                 lowlinks.set(v, Math.min(lowlinks.get(v), indices.get(w)));
             }
         }
+        // v is the root of an SCC when its lowlink equals its own discovery index
         if (lowlinks.get(v) === indices.get(v)) {
             const scc = [];
             let w;
@@ -34,6 +38,7 @@ export function tarjan(graph) {
                 onStack.delete(w);
                 scc.push(w);
             } while (w !== v);
+            // Only report non-trivial SCCs (length > 1 = a real cycle)
             if (scc.length > 1)
                 sccs.push(scc);
         }

package/dist/graph/algorithms/tarjan.js.map

@@ -1 +1 @@
-{"version":3,"file":"tarjan.js","sourceRoot":"","sources":["../../../src/graph/algorithms/tarjan.ts"],"names":[],"mappings":"AAEA;;;;;GAKG;AACH,MAAM,UAAU,MAAM,CAAC,KAAgB;IACrC,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,OAAO,GAAG,IAAI,GAAG,EAAU,CAAC;IAClC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC3C,MAAM,IAAI,GAAe,EAAE,CAAC;IAE5B,SAAS,aAAa,CAAC,CAAS;QAC9B,OAAO,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;QACtB,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;QACvB,KAAK,EAAE,CAAC;QACR,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACd,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QAEf,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;YACpC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;gBACpB,aAAa,CAAC,CAAC,CAAC,CAAC;gBACjB,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAE,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC;YAChE,CAAC;iBAAM,IAAI,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC1B,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAE,EAAE,OAAO,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC;YAC/D,CAAC;QACH,CAAC;QAED,IAAI,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;YACvC,MAAM,GAAG,GAAa,EAAE,CAAC;YACzB,IAAI,CAAqB,CAAC;YAC1B,GAAG,CAAC;gBACF,CAAC,GAAG,KAAK,CAAC,GAAG,EAAG,CAAC;gBACjB,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;gBAClB,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YACd,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;YAClB,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC;gBAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrC,CAAC;IACH,CAAC;IAED,KAAK,MAAM,EAAE,IAAI,KAAK,CAAC,OAAO,EAAE,EAAE,CAAC;QACjC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YAAE,aAAa,CAAC,EAAE,CAAC,CAAC;IAC1C,CAAC;IAED,OAAO,IAAI,CAAC;AACd,CAAC"}
+{"version":3,"file":"tarjan.js","sourceRoot":"","sources":["../../../src/graph/algorithms/tarjan.ts"],"names":[],"mappings":"AAEA;;;;;GAKG;AACH,MAAM,UAAU,MAAM,CAAC,KAAgB;IACrC,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,OAAO,GAAG,IAAI,GAAG,EAAU,CAAC;IAClC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC3C,MAAM,IAAI,GAAe,EAAE,CAAC;IAE5B,SAAS,aAAa,CAAC,CAAS;QAC9B,iEAAiE;QACjE,OAAO,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;QACtB,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;QACvB,KAAK,EAAE,CAAC;QACR,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACd,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QAEf,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;YACpC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;gBACpB,mDAAmD;gBACnD,aAAa,CAAC,CAAC,CAAC,CAAC;gBACjB,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAE,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC;YAChE,CAAC;iBAAM,IAAI,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC1B,yEAAyE;gBACzE,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAE,EAAE,OAAO,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC;YAC/D,CAAC;QACH,CAAC;QAED,0EAA0E;QAC1E,IAAI,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;YACvC,MAAM,GAAG,GAAa,EAAE,CAAC;YACzB,IAAI,CAAqB,CAAC;YAC1B,GAAG,CAAC;gBACF,CAAC,GAAG,KAAK,CAAC,GAAG,EAAG,CAAC;gBACjB,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;gBAClB,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YACd,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;YAClB,2DAA2D;YAC3D,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC;gBAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrC,CAAC;IACH,CAAC;IAED,KAAK,MAAM,EAAE,IAAI,KAAK,CAAC,OAAO,EAAE,EAAE,CAAC;QACjC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YAAE,aAAa,CAAC,EAAE,CAAC,CAAC;IAC1C,CAAC;IAED,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/graph/builders/dependency.js

@@ -42,10 +42,36 @@ function buildFileLevelGraph(dbOrRepo, noTests) {
     }
     return graph;
 }
+/**
+ * Fetch call edges from `dbOrRepo`, optionally filtered by a minimum confidence
+ * threshold. When `minConfidence` is unset, all call edges are returned.
+ */
+function resolveCallEdges(dbOrRepo, isRepo, minConfidence) {
+    if (minConfidence == null) {
+        return isRepo
+            ? dbOrRepo.getCallEdges()
+            : getCallEdges(dbOrRepo);
+    }
+    if (isRepo) {
+        // Trade-off: Repository.getCallEdges() returns all call edges, so we
+        // filter in JS. This is O(all call edges) rather than the SQL path's
+        // indexed WHERE clause. Acceptable for current data sizes; a dedicated
+        // getCallEdgesByMinConfidence(threshold) method on the Repository
+        // interface would be the proper fix if this becomes a bottleneck.
+        return dbOrRepo
+            .getCallEdges()
+            .filter((e) => e.confidence != null && e.confidence >= minConfidence);
+    }
+    return dbOrRepo
+        .prepare("SELECT source_id, target_id FROM edges WHERE kind = 'calls' AND confidence >= ?")
+        .all(minConfidence);
+}
 function buildFunctionLevelGraph(dbOrRepo, noTests, minConfidence) {
     const graph = new CodeGraph();
     const isRepo = dbOrRepo instanceof Repository;
-    let nodes = isRepo ? dbOrRepo.getCallableNodes() : getCallableNodes(dbOrRepo);
+    let nodes = isRepo
+        ? dbOrRepo.getCallableNodes()
+        : getCallableNodes(dbOrRepo);
     if (noTests)
         nodes = nodes.filter((n) => !isTestFile(n.file));
     const nodeIds = new Set();
@@ -58,27 +84,7 @@ function buildFunctionLevelGraph(dbOrRepo, noTests, minConfidence) {
         });
         nodeIds.add(n.id);
     }
-    let edges;
-    if (minConfidence != null) {
-        if (isRepo) {
-            // Trade-off: Repository.getCallEdges() returns all call edges, so we
-            // filter in JS. This is O(all call edges) rather than the SQL path's
-            // indexed WHERE clause. Acceptable for current data sizes; a dedicated
-            // getCallEdgesByMinConfidence(threshold) method on the Repository
-            // interface would be the proper fix if this becomes a bottleneck.
-            edges = dbOrRepo
-                .getCallEdges()
-                .filter((e) => e.confidence != null && e.confidence >= minConfidence);
-        }
-        else {
-            edges = dbOrRepo
-                .prepare("SELECT source_id, target_id FROM edges WHERE kind = 'calls' AND confidence >= ?")
-                .all(minConfidence);
-        }
-    }
-    else {
-        edges = isRepo ? dbOrRepo.getCallEdges() : getCallEdges(dbOrRepo);
-    }
+    const edges = resolveCallEdges(dbOrRepo, isRepo, minConfidence);
     for (const e of edges) {
         if (!nodeIds.has(e.source_id) || !nodeIds.has(e.target_id))
             continue;

package/dist/graph/builders/dependency.js.map

@@ -1 +1 @@
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package/dist/graph/classifiers/roles.d.ts

@@ -26,7 +26,16 @@ export interface RoleClassificationNode {
     isExported: boolean;
     testOnlyFanIn?: number;
     productionFanIn?: number;
-    /** True when the same file contains at least one non-constant callable connected to the graph (fanIn > 0 or fanOut > 0). */
+    /**
+     * True when the same file contains at least one callable connected to the graph
+     * (fanIn > 0 or fanOut > 0) that is not itself an annotation-only kind.
+     * Annotation-only kinds are `constant` and all members of `TYPE_DEF_KINDS`
+     * (struct, enum, trait, type, interface, record) — these are excluded because
+     * they are consumed via references/type-annotations rather than call edges and
+     * would otherwise produce a circular dependency in the active-file heuristic.
+     * Populated only for `constant` and `TYPE_DEF_KINDS` nodes; `undefined` for
+     * regular callables (functions, methods, classes, etc.) which don't need it.
+     */
     hasActiveFileSiblings?: boolean;
 }
 /**

package/dist/graph/classifiers/roles.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"roles.d.ts","sourceRoot":"","sources":["../../../src/graph/classifiers/roles.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAe,IAAI,EAAE,MAAM,gBAAgB,CAAC;AAExD,eAAO,MAAM,wBAAwB,EAAE,SAAS,MAAM,EAAqC,CAAC;AAoC5F,MAAM,WAAW,gBAAgB;IAC/B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AA0BD,wBAAgB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAI/C;AAED,MAAM,WAAW,sBAAsB;IACrC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,OAAO,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB;;;;;;;;;OASG;IACH,qBAAqB,CAAC,EAAE,OAAO,CAAC;CACjC;AAuGD;;GAEG;AACH,wBAAgB,aAAa,CAC3B,KAAK,EAAE,sBAAsB,EAAE,EAC/B,eAAe,CAAC,EAAE;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GAClD,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAUnB"}

package/dist/graph/classifiers/roles.js

@@ -12,6 +12,13 @@
 export const FRAMEWORK_ENTRY_PREFIXES = ['route:', 'event:', 'command:'];
 // ── Dead sub-classification helpers ────────────────────────────────
 const LEAF_KINDS = new Set(['parameter', 'property', 'constant']);
+/**
+ * Type definition kinds that are consumed via type annotations rather than calls.
+ * These have no inbound call edges by design — they are "used" by type references,
+ * struct literals, and generic parameters, none of which produce call edges.
+ * If the same file has active callables, type definitions are almost certainly live.
+ */
+const TYPE_DEF_KINDS = new Set(['struct', 'enum', 'trait', 'type', 'interface', 'record']);
 const FFI_EXTENSIONS = new Set(['.rs', '.c', '.cpp', '.h', '.go', '.java', '.cs']);
 /** Path patterns indicating framework-dispatched entry points. */
 const ENTRY_PATH_PATTERNS = [
@@ -21,6 +28,16 @@ const ENTRY_PATH_PATTERNS = [
     /handlers?[/\\]/,
     /middleware[/\\]/,
 ];
+/**
+ * Well-known Commander.js dispatch method names.
+ * When a method with one of these names lives in a file that matches
+ * ENTRY_PATH_PATTERNS, it is the actual framework entry point — not merely a
+ * candidate — so it must be classified as `entry` rather than `dead-entry`.
+ *
+ * `execute` — the action callback invoked by Commander on `program.action()`.
+ * `validate` — a pre-execution argument/option validator called before `execute`.
+ */
+const COMMANDER_DISPATCH_NAMES = new Set(['execute', 'validate']);
 /**
  * Refine a "dead" classification into a sub-category.
  */
@@ -69,11 +86,37 @@ function computeFanMedians(nodes) {
  * Covers framework-active constants, test-only callables, and the dead-* family.
  */
 function classifyUnreferencedNode(node) {
-    if (node.kind === 'constant' && node.hasActiveFileSiblings) {
-        // Constants consumed via identifier reference (not calls) have no
-        // inbound call edges. If the same file has active callables, the
-        // constant is almost certainly used locally — classify as leaf.
-        return 'leaf';
+    if (node.hasActiveFileSiblings) {
+        if (node.kind === 'constant') {
+            // Constants consumed via identifier reference (not calls) have no
+            // inbound call edges. If the same file has active callables, the
+            // constant is almost certainly used locally — classify as leaf.
+            return 'leaf';
+        }
+        if (node.kind && TYPE_DEF_KINDS.has(node.kind)) {
+            // Type definitions (struct, enum, trait, type, interface, record) are
+            // consumed via type annotations and struct literals — not calls — so they
+            // never get inbound call edges. If the same file has active callables,
+            // these types are almost certainly live — classify as leaf.
+            return 'leaf';
+        }
+        if (node.kind === 'method' && node.fanOut > 0) {
+            // Methods implementing interfaces are dispatched via conditional property
+            // access e.g. `if (v.enterFunction) v.enterFunction(...)`. Codegraph
+            // resolves the call to the property accessor rather than to the concrete
+            // method implementation, so the method has no inbound call edge. We
+            // require `fanOut > 0` as evidence of non-triviality, mirroring the
+            // function case — trivially-inert dead helper methods remain visible.
+            return 'leaf';
+        }
+        if (node.kind === 'function' && node.fanOut > 0) {
+            // Functions referenced as logical-or fallback defaults — e.g.
+            // `const fn = options._fetchLatest || fetchLatestVersion` — appear as
+            // value references, not call sites, so no call edge is produced. We
+            // require `fanOut > 0` as evidence that the function is non-trivial
+            // (i.e. it calls something), ruling out truly inert dead helpers.
+            return 'leaf';
+        }
     }
     if (node.testOnlyFanIn != null && node.testOnlyFanIn > 0)
         return 'test-only';
@@ -101,7 +144,18 @@ function classifyNodeRole(node, medFanIn, medFanOut) {
     if (FRAMEWORK_ENTRY_PREFIXES.some((p) => node.name.startsWith(p)))
         return 'entry';
     if (node.fanIn === 0) {
-        return node.isExported ? 'entry' : classifyUnreferencedNode(node);
+        if (!node.isExported) {
+            // Well-known Commander.js dispatch methods (execute, validate) in framework
+            // directories are confirmed entry points, not candidates. Promote them to
+            // `entry` directly so they don't appear in `--role dead` output.
+            if (node.file &&
+                COMMANDER_DISPATCH_NAMES.has(node.name) &&
+                ENTRY_PATH_PATTERNS.some((p) => p.test(node.file))) {
+                return 'entry';
+            }
+            return classifyUnreferencedNode(node);
+        }
+        return 'entry';
     }
     const hasProdFanIn = typeof node.productionFanIn === 'number';
     if (hasProdFanIn && node.productionFanIn === 0 && !node.isExported)

package/dist/graph/classifiers/roles.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -29,7 +29,7 @@ export { ownersData } from './features/owners.js';
 export { sequenceData } from './features/sequence.js';
 export { hotspotsData, moduleBoundariesData, structureData } from './features/structure.js';
 export { triageData } from './features/triage.js';
-export { loadConfig } from './infrastructure/config.js';
+export { loadConfig, loadConfigWithProvenance, resolveUserConfigPath, } from './infrastructure/config.js';
 export type { ArrayCompatSet } from './shared/constants.js';
 export { EXTENSIONS, IGNORE_DIRS } from './shared/constants.js';
 export { AnalysisError, BoundaryError, CodegraphError, ConfigError, DbError, EngineError, ParseError, ResolutionError, } from './shared/errors.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EACL,SAAS,EACT,YAAY,EACZ,WAAW,EACX,cAAc,EACd,WAAW,EACX,WAAW,EACX,YAAY,EACZ,UAAU,EACV,YAAY,EACZ,kBAAkB,EAClB,aAAa,EACb,QAAQ,EACR,aAAa,EACb,SAAS,EACT,SAAS,EACT,SAAS,GACV,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACL,eAAe,EACf,gBAAgB,EAChB,eAAe,EACf,UAAU,GACX,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAChD,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAC5C,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAC1D,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAC5E,OAAO,EAAE,QAAQ,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AACnE,OAAO,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,YAAY,EAAE,oBAAoB,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AAC5F,OAAO,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,EACL,UAAU,EACV,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,4BAA4B,CAAC;AACpC,YAAY,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AAC5D,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAChE,OAAO,EACL,aAAa,EACb,aAAa,EACb,cAAc,EACd,WAAW,EACX,OAAO,EACP,WAAW,EACX,UAAU,EACV,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,eAAe,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC"}

package/dist/index.js

@@ -29,7 +29,7 @@ export { ownersData } from './features/owners.js';
 export { sequenceData } from './features/sequence.js';
 export { hotspotsData, moduleBoundariesData, structureData } from './features/structure.js';
 export { triageData } from './features/triage.js';
-export { loadConfig } from './infrastructure/config.js';
+export { loadConfig, loadConfigWithProvenance, resolveUserConfigPath, } from './infrastructure/config.js';
 export { EXTENSIONS, IGNORE_DIRS } from './shared/constants.js';
 export { AnalysisError, BoundaryError, CodegraphError, ConfigError, DbError, EngineError, ParseError, ResolutionError, } from './shared/errors.js';
 export { EVERY_EDGE_KIND, EVERY_SYMBOL_KIND } from './shared/kinds.js';

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EACL,SAAS,EACT,YAAY,EACZ,WAAW,EACX,cAAc,EACd,WAAW,EACX,WAAW,EACX,YAAY,EACZ,UAAU,EACV,YAAY,EACZ,kBAAkB,EAClB,aAAa,EACb,QAAQ,EACR,aAAa,EACb,SAAS,EACT,SAAS,EACT,SAAS,GACV,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACL,eAAe,EACf,gBAAgB,EAChB,eAAe,EACf,UAAU,GACX,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAChD,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAC5C,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAC1D,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAC5E,OAAO,EAAE,QAAQ,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AACnE,OAAO,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,YAAY,EAAE,oBAAoB,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AAC5F,OAAO,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,EACL,UAAU,EACV,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,4BAA4B,CAAC;AAEpC,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAChE,OAAO,EACL,aAAa,EACb,aAAa,EACb,cAAc,EACd,WAAW,EACX,OAAO,EACP,WAAW,EACX,UAAU,EACV,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,eAAe,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC"}

package/dist/infrastructure/config.d.ts

@@ -5,6 +5,7 @@ export declare const DEFAULTS: {
     include: string[];
     exclude: string[];
     ignoreDirs: string[];
+    ignoreAdditionalDirs: string[];
     extensions: string[];
     aliases: Record<string, string>;
     build: {
@@ -12,7 +13,9 @@ export declare const DEFAULTS: {
         dbPath: string;
         driftThreshold: number;
         smallFilesThreshold: number;
-        typescriptResolver: false;
+        typescriptResolver: true;
+        engine: "auto" | "native" | "wasm";
+        fastSkipDiag: false;
     };
     query: {
         defaultDepth: number;
@@ -110,11 +113,18 @@ export declare const DEFAULTS: {
         briefHighRiskCallers: number;
         briefMediumRiskCallers: number;
         typePropagationDepth: number;
+        /**
+         * Confidence score assigned to a return type inferred from `return new Constructor()`
+         * when no explicit TypeScript annotation is present.
+         * Mirrors `INFERRED_RETURN_TYPE_CONFIDENCE` in `src/extractors/javascript.ts`.
+         * @reserved — not yet wired; see TODO above.
+         */
+        typeInferenceConfidence: number;
         /**
          * Maximum fixed-point iterations for the Phase 8.3 points-to solver.
          * @reserved — currently not wired to either the WASM solver
          * (`MAX_SOLVER_ITERATIONS` in `points-to.ts`) or the native Rust solver
-         * (`MAX_SOLVER_ITERATIONS` in `edge_builder.rs`), both of which use the
+         * (`MAX_SOLVER_ITERATIONS` in `stages/build_edges.rs`), both of which use the
          * same hardcoded value of 50.  See the TODO comment above.
          */
         pointsToMaxIterations: number;
@@ -177,17 +187,90 @@ export declare const DEFAULTS: {
         disabledTools: string[];
     };
 };
+/**
+ * Set the per-run user-config override from CLI flags.
+ * Called by the CLI preAction hook before any command executes.
+ * - false  → --no-user-config
+ * - string → --user-config <path>
+ * - true   → --user-config (bare, use default global file)
+ * - undefined → clear override, revert to consent-based resolution
+ */
+export declare function setUserConfigOverride(v: string | boolean | undefined): void;
+/**
+ * Return the canonical path where a new global config file should be written.
+ *
+ * Uses the same priority logic as resolveUserConfigPath() but always returns a
+ * path — it does not check whether the file exists. Used by `--init` to know
+ * where to scaffold the file.
+ *
+ * Priority:
+ * 1. CODEGRAPH_USER_CONFIG env var (used as-is)
+ * 2. $XDG_CONFIG_HOME/codegraph/config.json
+ *    %APPDATA%\codegraph\config.json  (Windows)
+ *    fallback: ~/.config/codegraph/config.json
+ */
+export declare function getDefaultUserConfigPath(): string;
+/**
+ * Resolve the absolute path to the user-level global config file.
+ *
+ * Priority:
+ * 1. CODEGRAPH_USER_CONFIG env var (location override only — not forced-on)
+ * 2. $XDG_CONFIG_HOME/codegraph/config.json  (Unix/macOS)
+ *    %APPDATA%\codegraph\config.json          (Windows)
+ *    fallback: ~/.config/codegraph/config.json
+ * 3. ~/.codegraph/config.json  (legacy, next to registry.json)
+ *
+ * Returns the path of the first existing file, or null if none exist.
+ */
+export declare function resolveUserConfigPath(): string | null;
+export declare function getLastAppliedGlobalPath(): string | null;
+export declare function getLastAppliedGlobalConfig(): Record<string, unknown> | null;
+/**
+ * Compute a short stable hash of the build-relevant config subset.
+ * Used by the pipeline to detect config changes that require a full rebuild.
+ */
+export declare function computeConfigHash(config: CodegraphConfig): string;
+/**
+ * When called from the build command, check whether we should prompt the user
+ * for global-config consent and, if so, prompt and persist the answer.
+ *
+ * Only fires when ALL of:
+ *   - A global config file exists
+ *   - The repo is undecided (no recorded consent)
+ *   - Not matched by appliesTo globs
+ *   - process.stdin.isTTY && process.stdout.isTTY
+ *   - CI env is not set
+ *   - No per-run --user-config / --no-user-config flag is active
+ */
+export declare function promptForConsentIfNeeded(rootDir: string, registryPath?: string): Promise<void>;
+/** Options for loadConfig. */
+export interface LoadConfigOpts {
+    /** Per-run user-config override (from CLI flags or programmatic call). */
+    userConfig?: string | boolean;
+    /** Registry path override (mainly for tests). */
+    registryPath?: string;
+}
 /**
  * Load project configuration from a .codegraphrc.json or similar file.
- * Returns merged config with defaults. Results are cached per cwd.
+ * Returns merged config with defaults: defaults → global (if applied) → project → env → secrets.
+ * Results are cached per cwd + applied global path.
  */
-export declare function loadConfig(cwd?: string): CodegraphConfig;
+export declare function loadConfig(cwd?: string, opts?: LoadConfigOpts): CodegraphConfig;
 /**
  * Clear the config cache. Intended for long-running processes that need to
  * pick up on-disk config changes, and for test isolation when tests share
  * the same cwd.
  */
 export declare function clearConfigCache(): void;
+/**
+ * Load config and return it together with per-key provenance information.
+ * Used by `codegraph config --explain`.
+ *
+ * Calls loadConfig first so _lastAppliedGlobalConfig is populated, then uses
+ * that cached data for the global-layer provenance — avoiding a second disk
+ * read and eliminating the TOCTOU window between the two reads.
+ */
+export declare function loadConfigWithProvenance(cwd?: string, opts?: LoadConfigOpts): import('../types.js').ConfigWithProvenance;
 export declare function applyEnvOverrides(config: CodegraphConfig): CodegraphConfig;
 export declare function resolveSecrets(config: CodegraphConfig): CodegraphConfig;
 interface WorkspaceEntry {

package/dist/infrastructure/config.d.ts.map

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