@optave/codegraph 3.11.0 → 3.11.1

package/dist/domain/graph/builder/stages/native-orchestrator.js.map

@@ -0,0 +1 @@
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package/dist/domain/graph/cycles.d.ts

@@ -1,4 +1,8 @@
 import type { BetterSqlite3Database } from '../../types.js';
+type Edge = {
+    source: string;
+    target: string;
+};
 /**
  * Find cycles using Tarjan's SCC algorithm.
  *
@@ -9,9 +13,7 @@ export declare function findCycles(db: BetterSqlite3Database, opts?: {
     fileLevel?: boolean;
     noTests?: boolean;
 }): string[][];
-export declare function findCyclesJS(edges: Array<{
-    source: string;
-    target: string;
-}>): string[][];
+export declare function findCyclesJS(edges: Edge[]): string[][];
 export declare function formatCycles(cycles: string[][]): string;
+export {};
 //# sourceMappingURL=cycles.d.ts.map

package/dist/domain/graph/cycles.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cycles.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/cycles.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AAE5D;;;;;GAKG;AACH,wBAAgB,UAAU,CACxB,EAAE,EAAE,qBAAqB,EACzB,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAO,GACpD,MAAM,EAAE,EAAE,CAqDZ;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,KAAK,CAAC;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAEzF;AAiED,wBAAgB,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,GAAG,MAAM,CAgBvD"}
+{"version":3,"file":"cycles.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/cycles.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AAE5D,KAAK,IAAI,GAAG;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAuC/C;;;;;GAKG;AACH,wBAAgB,UAAU,CACxB,EAAE,EAAE,qBAAqB,EACzB,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAO,GACpD,MAAM,EAAE,EAAE,CAWZ;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,IAAI,EAAE,GAAG,MAAM,EAAE,EAAE,CAEtD;AAsED,wBAAgB,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,GAAG,MAAM,CAgBvD"}

package/dist/domain/graph/cycles.js

@@ -1,6 +1,46 @@
 import { getCallableNodes, getCallEdges, getFileNodesAll, getImportEdges } from '../../db/index.js';
 import { loadNative } from '../../infrastructure/native.js';
 import { isTestFile } from '../../infrastructure/test-filter.js';
+/**
+ * Build a label-based edge list from DB rows, filtering to known nodes and
+ * deduplicating. Self-loops are skipped (Tarjan treats them as trivial SCCs).
+ */
+function buildLabelEdges(dbEdges, idToLabel) {
+    const edges = [];
+    const seen = new Set();
+    for (const e of dbEdges) {
+        if (e.source_id === e.target_id)
+            continue;
+        const src = idToLabel.get(e.source_id);
+        const tgt = idToLabel.get(e.target_id);
+        if (src === undefined || tgt === undefined)
+            continue;
+        const key = `${src}\0${tgt}`;
+        if (seen.has(key))
+            continue;
+        seen.add(key);
+        edges.push({ source: src, target: tgt });
+    }
+    return edges;
+}
+function buildFileLevelEdges(db, noTests) {
+    let nodes = getFileNodesAll(db);
+    if (noTests)
+        nodes = nodes.filter((n) => !isTestFile(n.file));
+    const idToLabel = new Map();
+    for (const n of nodes)
+        idToLabel.set(n.id, n.file);
+    return buildLabelEdges(getImportEdges(db), idToLabel);
+}
+function buildCallableEdges(db, noTests) {
+    let nodes = getCallableNodes(db);
+    if (noTests)
+        nodes = nodes.filter((n) => !isTestFile(n.file));
+    const idToLabel = new Map();
+    for (const n of nodes)
+        idToLabel.set(n.id, `${n.name}|${n.file}`);
+    return buildLabelEdges(getCallEdges(db), idToLabel);
+}
 /**
  * Find cycles using Tarjan's SCC algorithm.
  *
@@ -10,56 +50,7 @@ import { isTestFile } from '../../infrastructure/test-filter.js';
 export function findCycles(db, opts = {}) {
     const fileLevel = opts.fileLevel !== false;
     const noTests = opts.noTests || false;
-    const edges = [];
-    const seen = new Set();
-    if (fileLevel) {
-        let nodes = getFileNodesAll(db);
-        if (noTests)
-            nodes = nodes.filter((n) => !isTestFile(n.file));
-        const nodeIds = new Set();
-        const idToFile = new Map();
-        for (const n of nodes) {
-            nodeIds.add(n.id);
-            idToFile.set(n.id, n.file);
-        }
-        for (const e of getImportEdges(db)) {
-            if (!nodeIds.has(e.source_id) || !nodeIds.has(e.target_id))
-                continue;
-            if (e.source_id === e.target_id)
-                continue;
-            const src = idToFile.get(e.source_id);
-            const tgt = idToFile.get(e.target_id);
-            const key = `${src}\0${tgt}`;
-            if (seen.has(key))
-                continue;
-            seen.add(key);
-            edges.push({ source: src, target: tgt });
-        }
-    }
-    else {
-        let nodes = getCallableNodes(db);
-        if (noTests)
-            nodes = nodes.filter((n) => !isTestFile(n.file));
-        const nodeIds = new Set();
-        const idToLabel = new Map();
-        for (const n of nodes) {
-            nodeIds.add(n.id);
-            idToLabel.set(n.id, `${n.name}|${n.file}`);
-        }
-        for (const e of getCallEdges(db)) {
-            if (!nodeIds.has(e.source_id) || !nodeIds.has(e.target_id))
-                continue;
-            if (e.source_id === e.target_id)
-                continue;
-            const src = idToLabel.get(e.source_id);
-            const tgt = idToLabel.get(e.target_id);
-            const key = `${src}\0${tgt}`;
-            if (seen.has(key))
-                continue;
-            seen.add(key);
-            edges.push({ source: src, target: tgt });
-        }
-    }
+    const edges = fileLevel ? buildFileLevelEdges(db, noTests) : buildCallableEdges(db, noTests);
     const native = loadNative();
     if (native) {
         return native.detectCycles(edges);
@@ -69,11 +60,7 @@ export function findCycles(db, opts = {}) {
 export function findCyclesJS(edges) {
     return tarjanFromEdges(edges);
 }
-/**
- * Run Tarjan's SCC on a flat edge list. Returns SCCs with length > 1 (cycles).
- * Uses a simple adjacency-list Map instead of a full CodeGraph.
- */
-function tarjanFromEdges(edges) {
+function buildAdjacency(edges) {
     const adj = new Map();
     const allNodes = new Set();
     for (const { source, target } of edges) {
@@ -86,6 +73,14 @@ function tarjanFromEdges(edges) {
         }
         list.push(target);
     }
+    return { adj, allNodes };
+}
+/**
+ * Run Tarjan's SCC on a flat edge list. Returns SCCs with length > 1 (cycles).
+ * Uses a simple adjacency-list Map instead of a full CodeGraph.
+ */
+function tarjanFromEdges(edges) {
+    const { adj, allNodes } = buildAdjacency(edges);
     let index = 0;
     const stack = [];
     const onStack = new Set();

package/dist/domain/graph/cycles.js.map

@@ -1 +1 @@
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package/dist/domain/graph/journal.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"journal.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/journal.ts"],"names":[],"mappings":"AAKA,eAAO,MAAM,gBAAgB,oBAAoB,CAAC;AAgOlD,UAAU,aAAa;IACrB,KAAK,EAAE,OAAO,CAAC;IACf,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;CACpB;AAwCD,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,aAAa,CAe1D;AAED,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAE,CAAC,GAClD,IAAI,CAeN;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI,CAiB3E;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,kCAAkC,CAChD,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAE,CAAC,EACnD,SAAS,EAAE,MAAM,GAChB,IAAI,CA+BN"}

package/dist/domain/graph/journal.js

@@ -85,64 +85,75 @@ function trySteal(lockPath) {
     }
     return { fd, nonce };
 }
-function acquireJournalLock(lockPath) {
-    const start = Date.now();
-    for (;;) {
-        const nonce = `${process.pid}-${crypto.randomBytes(8).toString('hex')}`;
+/**
+ * Try to create the lockfile fresh via `wx`. Returns the acquired lock on
+ * success, `null` if another holder exists, or throws on unexpected errors.
+ *
+ * If the stamp write fails (ENOSPC, I/O error) we release the empty file —
+ * leaving it would look stale to concurrent waiters and admit double-acquire.
+ */
+function tryFreshAcquire(lockPath) {
+    const nonce = `${process.pid}-${crypto.randomBytes(8).toString('hex')}`;
+    let fd;
+    try {
+        fd = fs.openSync(lockPath, 'wx');
+    }
+    catch (e) {
+        if (e.code === 'EEXIST')
+            return null;
+        throw e;
+    }
+    try {
+        fs.writeSync(fd, `${process.pid}\n${nonce}\n`);
+    }
+    catch {
         try {
-            const fd = fs.openSync(lockPath, 'wx');
-            try {
-                fs.writeSync(fd, `${process.pid}\n${nonce}\n`);
-            }
-            catch {
-                // Stamp write failed (ENOSPC, I/O error). An empty lockfile would
-                // look stale to concurrent waiters (Number('') === 0, isPidAlive(0)
-                // returns false), so they'd steal our live lock. Release and retry.
-                try {
-                    fs.closeSync(fd);
-                }
-                catch {
-                    /* ignore */
-                }
-                try {
-                    fs.unlinkSync(lockPath);
-                }
-                catch {
-                    /* ignore */
-                }
-                if (Date.now() - start > LOCK_TIMEOUT_MS) {
-                    throw new Error(`Failed to acquire journal lock at ${lockPath} within ${LOCK_TIMEOUT_MS}ms`);
-                }
-                sleepSync(LOCK_RETRY_MS);
-                continue;
-            }
-            return { fd, nonce };
+            fs.closeSync(fd);
         }
-        catch (e) {
-            if (e.code !== 'EEXIST')
-                throw e;
+        catch {
+            /* ignore */
         }
-        let holderAlive = true;
         try {
-            const pidContent = fs.readFileSync(lockPath, 'utf-8').split('\n')[0].trim();
-            holderAlive = isPidAlive(Number(pidContent));
+            fs.unlinkSync(lockPath);
         }
         catch {
-            /* unreadable — fall through to age check */
-        }
-        let shouldSteal = !holderAlive;
-        if (holderAlive) {
-            try {
-                const stat = fs.statSync(lockPath);
-                if (Date.now() - stat.mtimeMs > LOCK_STALE_MS) {
-                    shouldSteal = true;
-                }
-            }
-            catch {
-                /* stat failed — keep retrying */
-            }
+            /* ignore */
         }
-        if (shouldSteal) {
+        return null;
+    }
+    return { fd, nonce };
+}
+/**
+ * Decide whether the current lock holder is stale and should be stolen.
+ * Returns true if the PID is dead, or if the lockfile mtime exceeds the
+ * staleness threshold.
+ */
+function isLockStale(lockPath) {
+    let holderAlive = true;
+    try {
+        const pidContent = fs.readFileSync(lockPath, 'utf-8').split('\n')[0].trim();
+        holderAlive = isPidAlive(Number(pidContent));
+    }
+    catch {
+        /* unreadable — fall through to age check */
+    }
+    if (!holderAlive)
+        return true;
+    try {
+        const stat = fs.statSync(lockPath);
+        return Date.now() - stat.mtimeMs > LOCK_STALE_MS;
+    }
+    catch {
+        return false;
+    }
+}
+function acquireJournalLock(lockPath) {
+    const start = Date.now();
+    for (;;) {
+        const fresh = tryFreshAcquire(lockPath);
+        if (fresh)
+            return fresh;
+        if (isLockStale(lockPath)) {
             const stolen = trySteal(lockPath);
             if (stolen)
                 return stolen;
@@ -217,25 +228,19 @@ function withJournalLock(rootDir, fn) {
         releaseJournalLock(lockPath, lock);
     }
 }
-export function readJournal(rootDir) {
-    const journalPath = path.join(rootDir, '.codegraph', JOURNAL_FILENAME);
-    let content;
-    try {
-        content = fs.readFileSync(journalPath, 'utf-8');
-    }
-    catch {
-        return { valid: false };
-    }
-    const lines = content.split('\n');
-    if (lines.length === 0 || !lines[0].startsWith(HEADER_PREFIX)) {
+function parseJournalHeader(firstLine) {
+    if (!firstLine || !firstLine.startsWith(HEADER_PREFIX)) {
         debug('Journal has malformed or missing header');
-        return { valid: false };
+        return null;
     }
-    const timestamp = Number(lines[0].slice(HEADER_PREFIX.length).trim());
+    const timestamp = Number(firstLine.slice(HEADER_PREFIX.length).trim());
     if (!Number.isFinite(timestamp) || timestamp <= 0) {
         debug('Journal has invalid timestamp');
-        return { valid: false };
+        return null;
     }
+    return timestamp;
+}
+function parseJournalBody(lines) {
     const changed = [];
     const removed = [];
     const seenChanged = new Set();
@@ -251,13 +256,27 @@ export function readJournal(rootDir) {
                 removed.push(filePath);
             }
         }
-        else {
-            if (!seenChanged.has(line)) {
-                seenChanged.add(line);
-                changed.push(line);
-            }
+        else if (!seenChanged.has(line)) {
+            seenChanged.add(line);
+            changed.push(line);
         }
     }
+    return { changed, removed };
+}
+export function readJournal(rootDir) {
+    const journalPath = path.join(rootDir, '.codegraph', JOURNAL_FILENAME);
+    let content;
+    try {
+        content = fs.readFileSync(journalPath, 'utf-8');
+    }
+    catch {
+        return { valid: false };
+    }
+    const lines = content.split('\n');
+    const timestamp = parseJournalHeader(lines[0]);
+    if (timestamp === null)
+        return { valid: false };
+    const { changed, removed } = parseJournalBody(lines);
     return { valid: true, timestamp, changed, removed };
 }
 export function appendJournalEntries(rootDir, entries) {

package/dist/domain/graph/journal.js.map

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package/dist/domain/graph/watcher.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/watcher.ts"],"names":[],"mappings":"AAkRA;;;;;;;;;;;GAWG;AACH,wBAAgB,4BAA4B,CAC1C,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GACxB,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,OAAO,CAAA;CAAE,CAAC,CAK3C;AAqBD,wBAAsB,YAAY,CAChC,OAAO,EAAE,MAAM,EACf,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,YAAY,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GACrF,OAAO,CAAC,IAAI,CAAC,CAYf"}
+{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/watcher.ts"],"names":[],"mappings":"AAwRA;;;;;;;;;;;GAWG;AACH,wBAAgB,4BAA4B,CAC1C,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GACxB,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,OAAO,CAAA;CAAE,CAAC,CAK3C;AAqBD,wBAAsB,YAAY,CAChC,OAAO,EAAE,MAAM,EACf,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,YAAY,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GACrF,OAAO,CAAC,IAAI,CAAC,CAYf"}

package/dist/domain/graph/watcher.js

@@ -25,6 +25,7 @@ function prepareWatcherStatements(db) {
         },
         insertEdge: db.prepare('INSERT INTO edges (source_id, target_id, kind, confidence, dynamic) VALUES (?, ?, ?, ?, ?)'),
         countNodes: db.prepare('SELECT COUNT(*) as c FROM nodes WHERE file = ?'),
+        countEdges: db.prepare('SELECT COUNT(*) as c FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file = ?)'),
         findNodeInFile: db.prepare("SELECT id, file FROM nodes WHERE name = ? AND kind IN ('function', 'method', 'class', 'interface', 'type', 'struct', 'enum', 'trait', 'record', 'module', 'constant') AND file = ?"),
         findNodeByName: db.prepare("SELECT id, file FROM nodes WHERE name = ? AND kind IN ('function', 'method', 'class', 'interface', 'type', 'struct', 'enum', 'trait', 'record', 'module', 'constant')"),
         listSymbols: db.prepare("SELECT name, kind, line FROM nodes WHERE file = ? AND kind != 'file'"),
@@ -74,7 +75,7 @@ function writeJournalAndChangeEvents(rootDir, updates) {
     const changeEvents = updates.map((r) => buildChangeEvent(r.file, r.event, r.symbolDiff, {
         nodesBefore: r.nodesBefore,
         nodesAfter: r.nodesAfter,
-        edgesAdded: r.edgesAdded,
+        edgesAdded: r.edgesAdded - r.edgesBefore,
     }));
     try {
         appendChangeEvents(rootDir, changeEvents);
@@ -92,7 +93,9 @@ function logRebuildResults(updates) {
             info(`Removed: ${r.file} (-${r.nodesRemoved} nodes)`);
         }
         else {
-            info(`Updated: ${r.file} (${nodeStr} nodes, +${r.edgesAdded} edges)`);
+            const edgeDelta = r.edgesAdded - r.edgesBefore;
+            const edgeStr = edgeDelta >= 0 ? `+${edgeDelta}` : `${edgeDelta}`;
+            info(`Updated: ${r.file} (${nodeStr} nodes, ${edgeStr} edges)`);
         }
     }
 }

package/dist/domain/graph/watcher.js.map

@@ -1 +1 @@
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package/dist/domain/parser.d.ts

@@ -14,24 +14,6 @@ interface ParseEngineOpts {
 export declare function createParsers(): Promise<Map<string, Parser | null>>;
 export declare function disposeParsers(): Promise<void>;
 export declare function getParser(parsers: Map<string, Parser | null>, filePath: string): Parser | null;
-/**
- * Backfill missing AST-analysis data (astNodes, dataflow, def.complexity,
- * def.cfg) via the WASM worker pool for files that were parsed by the native
- * engine but are missing one or more analyses.
- *
- * Historically this function populated `symbols._tree` so the main-thread
- * visitor walk in `ast-analysis/engine.ts` could run. After the worker-isolation
- * refactor (#965), the worker runs every visitor itself and returns pre-computed
- * analysis data — `_tree` is never set on the main thread.
- *
- * Name is preserved for caller compatibility; the function now ensures
- * *analysis data* rather than *trees*.
- *
- * `needsFn` (optional): when provided, only files for which it returns true are
- * re-parsed. Without it the function falls back to "any WASM-parseable file
- * without _tree", which was the source of #1036 — a single file missing one
- * analysis triggered a full-build re-parse of every WASM-parseable file.
- */
 export declare function ensureWasmTrees(fileSymbols: Map<string, any>, rootDir: string, needsFn?: (relPath: string, symbols: any) => boolean): Promise<void>;
 /**
  * Check whether the required WASM grammar files exist on disk.
@@ -71,11 +53,18 @@ export interface NativeDropClassification {
  */
 export declare function classifyNativeDrops(relPaths: Iterable<string>): NativeDropClassification;
 /**
- * Render `{ ext → paths[] }` as `ext (n: sample.ext, ...)` slices for log lines.
- * Caps at 3 sample paths per extension and 6 extensions total to keep warnings
- * readable when many languages are dropped at once. Extensions are sorted by
- * descending file count so the loudest offender shows up first; ties keep
- * insertion order. Pure function — safe to unit-test independently.
+ * Render `{ ext → paths[] }` as a multi-line tabular breakdown for log lines.
+ * Each extension occupies its own line so a long warning scans like a table
+ * instead of a wall of semicolon-separated slices. Caps at 3 sample paths per
+ * extension and 6 extensions total to keep output bounded when many languages
+ * are dropped at once. Extensions are sorted by descending file count so the
+ * loudest offender shows up first; ties keep insertion order.
+ *
+ * Returns the empty string for empty input, and otherwise a string that
+ * begins with `\n` so callers can append it directly after the header line
+ * (`"Backfilling via WASM:" + formatDropExtensionSummary(...)`).
+ *
+ * Pure function — safe to unit-test independently.
  */
 export declare function formatDropExtensionSummary(buckets: Map<string, string[]>): string;
 /**