@opentrons/shared-data 0.0.1-alpha.20 → 0.1.0-alpha.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (154) hide show
  1. package/Makefile +1 -1
  2. package/lib/opentrons-shared-data.js +1 -1
  3. package/lib/opentrons-shared-data.js.map +1 -1
  4. package/package.json +1 -1
  5. package/js/__tests__/__snapshots__/pipettes.test.ts.snap +0 -5969
  6. package/js/__tests__/deckSchemas.test.ts +0 -87
  7. package/js/__tests__/errors.test.js +0 -21
  8. package/js/__tests__/getAreSlotsAdjacent.test.ts +0 -128
  9. package/js/__tests__/getWellNamePerMultiTip.test.ts +0 -162
  10. package/js/__tests__/labwareDefQuirks.test.ts +0 -37
  11. package/js/__tests__/labwareDefSchemaV1.test.ts +0 -82
  12. package/js/__tests__/labwareDefSchemaV2.test.ts +0 -298
  13. package/js/__tests__/moduleAccessors.test.ts +0 -50
  14. package/js/__tests__/moduleSpecsSchema.test.ts +0 -77
  15. package/js/__tests__/pipetteSchemaV2.test.ts +0 -107
  16. package/js/__tests__/pipetteSpecSchemas.test.ts +0 -48
  17. package/js/__tests__/pipettes.test.ts +0 -58
  18. package/js/__tests__/protocolSchemaV4.test.ts +0 -137
  19. package/js/__tests__/protocolSchemaV5.test.ts +0 -137
  20. package/js/__tests__/protocolSchemaV6.test.ts +0 -132
  21. package/js/__tests__/protocolSchemaV7.test.ts +0 -64
  22. package/js/__tests__/protocolValidation.test.ts +0 -83
  23. package/js/__tests__/sortWells.test.ts +0 -40
  24. package/js/__tests__/splitWellsOnColumn.test.ts +0 -21
  25. package/js/__tests__/validateErrors.test.js +0 -34
  26. package/js/constants.ts +0 -338
  27. package/js/cypressUtils.ts +0 -35
  28. package/js/errors.ts +0 -33
  29. package/js/fixtures.ts +0 -161
  30. package/js/getLabware.ts +0 -154
  31. package/js/gripper.ts +0 -29
  32. package/js/helpers/__tests__/getAdapterName.test.ts +0 -31
  33. package/js/helpers/__tests__/getDeckDefFromLoadedLabware.test.ts +0 -12
  34. package/js/helpers/__tests__/getVectorDifference.test.ts +0 -25
  35. package/js/helpers/__tests__/getVectorSum.test.ts +0 -21
  36. package/js/helpers/__tests__/labwareInference.test.ts +0 -84
  37. package/js/helpers/__tests__/orderWells.test.ts +0 -87
  38. package/js/helpers/__tests__/parseProtocolData.test.ts +0 -165
  39. package/js/helpers/__tests__/volume.test.ts +0 -108
  40. package/js/helpers/__tests__/wellSets.test.ts +0 -352
  41. package/js/helpers/get96Channel384WellPlateWells.ts +0 -44
  42. package/js/helpers/getAddressableAreasInProtocol.ts +0 -59
  43. package/js/helpers/getLoadedLabwareDefinitionsByUri.ts +0 -30
  44. package/js/helpers/getModuleVizDims.ts +0 -118
  45. package/js/helpers/getOccludedSlotCountForModule.ts +0 -13
  46. package/js/helpers/getVectorDifference.ts +0 -12
  47. package/js/helpers/getVectorSum.ts +0 -12
  48. package/js/helpers/getWellNamePerMultiTip.ts +0 -86
  49. package/js/helpers/getWellTotalVolume.ts +0 -16
  50. package/js/helpers/index.ts +0 -347
  51. package/js/helpers/labwareInference.ts +0 -92
  52. package/js/helpers/orderWells.ts +0 -69
  53. package/js/helpers/parseProtocolData.ts +0 -141
  54. package/js/helpers/volume.ts +0 -35
  55. package/js/helpers/wellIsRect.ts +0 -6
  56. package/js/helpers/wellSets.ts +0 -155
  57. package/js/index.ts +0 -14
  58. package/js/labwareTools/__tests__/__snapshots__/createIrregularLabware.test.ts.snap +0 -3
  59. package/js/labwareTools/__tests__/__snapshots__/createLabware.test.ts.snap +0 -3
  60. package/js/labwareTools/__tests__/createDefaultDisplayName.test.ts +0 -111
  61. package/js/labwareTools/__tests__/createIrregularLabware.test.ts +0 -226
  62. package/js/labwareTools/__tests__/createLabware.test.ts +0 -147
  63. package/js/labwareTools/index.ts +0 -452
  64. package/js/modules.ts +0 -97
  65. package/js/pipettes.ts +0 -89
  66. package/js/protocols.ts +0 -290
  67. package/js/schema.ts +0 -80
  68. package/js/scripts/generateDeckLayersFromSVG.js +0 -46
  69. package/js/titleCase.ts +0 -30
  70. package/js/types.ts +0 -600
  71. package/python/.coveragerc +0 -4
  72. package/python/.flake8 +0 -32
  73. package/python/Config.in +0 -10
  74. package/python/Makefile +0 -134
  75. package/python/Pipfile +0 -28
  76. package/python/Pipfile.lock +0 -645
  77. package/python/buildroot.mk +0 -30
  78. package/python/mypy.ini +0 -41
  79. package/python/opentrons_shared_data/__init__.py +0 -17
  80. package/python/opentrons_shared_data/_version.py +0 -20
  81. package/python/opentrons_shared_data/command/__init__.py +0 -52
  82. package/python/opentrons_shared_data/deck/__init__.py +0 -96
  83. package/python/opentrons_shared_data/deck/dev_types.py +0 -180
  84. package/python/opentrons_shared_data/errors/__init__.py +0 -30
  85. package/python/opentrons_shared_data/errors/categories.py +0 -60
  86. package/python/opentrons_shared_data/errors/codes.py +0 -108
  87. package/python/opentrons_shared_data/errors/exceptions.py +0 -915
  88. package/python/opentrons_shared_data/gripper/__init__.py +0 -63
  89. package/python/opentrons_shared_data/gripper/constants.py +0 -6
  90. package/python/opentrons_shared_data/gripper/gripper_definition.py +0 -101
  91. package/python/opentrons_shared_data/labware/__init__.py +0 -22
  92. package/python/opentrons_shared_data/labware/constants.py +0 -7
  93. package/python/opentrons_shared_data/labware/dev_types.py +0 -140
  94. package/python/opentrons_shared_data/labware/labware_definition.py +0 -328
  95. package/python/opentrons_shared_data/load.py +0 -57
  96. package/python/opentrons_shared_data/module/__init__.py +0 -74
  97. package/python/opentrons_shared_data/module/dev_types.py +0 -141
  98. package/python/opentrons_shared_data/pipette/__init__.py +0 -107
  99. package/python/opentrons_shared_data/pipette/dev_types.py +0 -177
  100. package/python/opentrons_shared_data/pipette/file_operation_helpers.py +0 -37
  101. package/python/opentrons_shared_data/pipette/load_data.py +0 -261
  102. package/python/opentrons_shared_data/pipette/model_constants.py +0 -123
  103. package/python/opentrons_shared_data/pipette/mutable_configurations.py +0 -431
  104. package/python/opentrons_shared_data/pipette/pipette_definition.py +0 -503
  105. package/python/opentrons_shared_data/pipette/pipette_load_name_conversions.py +0 -240
  106. package/python/opentrons_shared_data/pipette/scripts/__init__.py +0 -0
  107. package/python/opentrons_shared_data/pipette/scripts/build_json_script.py +0 -469
  108. package/python/opentrons_shared_data/pipette/scripts/update_configuration_files.py +0 -450
  109. package/python/opentrons_shared_data/pipette/types.py +0 -193
  110. package/python/opentrons_shared_data/protocol/__init__.py +0 -13
  111. package/python/opentrons_shared_data/protocol/constants.py +0 -98
  112. package/python/opentrons_shared_data/protocol/dev_types.py +0 -436
  113. package/python/opentrons_shared_data/protocol/models/__init__.py +0 -48
  114. package/python/opentrons_shared_data/protocol/models/protocol_schema_v6.py +0 -145
  115. package/python/opentrons_shared_data/protocol/models/protocol_schema_v7.py +0 -95
  116. package/python/opentrons_shared_data/protocol/models/protocol_schema_v8.py +0 -110
  117. package/python/opentrons_shared_data/protocol/models/shared_models.py +0 -111
  118. package/python/opentrons_shared_data/py.typed +0 -0
  119. package/python/opentrons_shared_data/robot/__init__.py +0 -33
  120. package/python/opentrons_shared_data/robot/dev_types.py +0 -37
  121. package/python/pytest.ini +0 -2
  122. package/python/setup.cfg +0 -5
  123. package/python/setup.py +0 -179
  124. package/python/tests/__init__.py +0 -1
  125. package/python/tests/conftest.py +0 -0
  126. package/python/tests/deck/__init__.py +0 -0
  127. package/python/tests/deck/test_list_names.py +0 -12
  128. package/python/tests/deck/test_position.py +0 -113
  129. package/python/tests/deck/test_typechecks.py +0 -28
  130. package/python/tests/errors/__init__.py +0 -1
  131. package/python/tests/errors/test_error_completeness.py +0 -19
  132. package/python/tests/errors/test_exceptions.py +0 -74
  133. package/python/tests/gripper/__init__.py +0 -0
  134. package/python/tests/gripper/test_definition.py +0 -30
  135. package/python/tests/gripper/test_load.py +0 -16
  136. package/python/tests/labware/__init__.py +0 -13
  137. package/python/tests/labware/test_typechecks.py +0 -21
  138. package/python/tests/module/__init__.py +0 -20
  139. package/python/tests/module/test_load.py +0 -49
  140. package/python/tests/module/test_typechecks.py +0 -34
  141. package/python/tests/pipette/__init__.py +0 -0
  142. package/python/tests/pipette/test_load_data.py +0 -103
  143. package/python/tests/pipette/test_mutable_configurations.py +0 -266
  144. package/python/tests/pipette/test_pipette_definition.py +0 -183
  145. package/python/tests/pipette/test_pipette_load_name_conversions.py +0 -222
  146. package/python/tests/pipette/test_typechecks.py +0 -50
  147. package/python/tests/pipette/test_validate_schema.py +0 -37
  148. package/python/tests/protocol/__init__.py +0 -15
  149. package/python/tests/protocol/test_protocol_schema_v6.py +0 -107
  150. package/python/tests/protocol/test_protocol_schema_v7.py +0 -34
  151. package/python/tests/protocol/test_protocol_schema_v8.py +0 -20
  152. package/python/tests/protocol/test_typechecks.py +0 -36
  153. package/python/tests/robot/__init__.py +0 -0
  154. package/python/tests/robot/test_typechecks.py +0 -20
package/python/Makefile DELETED
@@ -1,134 +0,0 @@
1
- # shared-data/python makefile
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-
3
- include ../../scripts/python.mk
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- include ../../scripts/push.mk
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-
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- # Host key location for robot
7
- ssh_key ?= $(default_ssh_key)
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- # Other SSH args for robot
9
- ssh_opts ?= $(default_ssh_opts)
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-
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- # using bash instead of /bin/bash in SHELL prevents macOS optimizing away our PATH update
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- SHELL := bash
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-
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- # add node_modules/.bin to PATH
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- PATH := $(shell cd ../.. && yarn bin):$(PATH)
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-
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- # This may be set as an environment variable (and is by CI tasks that upload
18
- # to test pypi) to add a .dev extension to the python package versions. If
19
- # empty, no .dev extension is appended, so this definition is here only as
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- # documentation
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- BUILD_NUMBER ?=
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-
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- ot_project := $(OPENTRONS_PROJECT)
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- project_rs_default = $(if $(ot_project),$(ot_project),robot-stack)
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- project_ot3_default = $(if $(ot_project),$(ot_project),ot3)
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-
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- # this may be set as an environment variable to select the version of
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- # python to run if pyenv is not available. it should always be set to
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- # point to a python3.6.
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- OT_PYTHON ?= python
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-
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- BUILD_DIR := dist
33
-
34
-
35
- wheel_file = $(BUILD_DIR)/$(call python_get_wheelname,shared-data,$(project_rs_default),opentrons_shared_data,$(BUILD_NUMBER),../../scripts/python_build_utils.py)
36
- sdist_file = $(BUILD_DIR)/$(call python_get_sdistname,shared-data,$(project_ot3_default),opentrons_shared_data,,../../scripts/python_build_utils.py)
37
-
38
- py_sources = $(filter %.py,$(shell $(SHX) find opentrons_shared_data)) opentrons_shared_data/py.typed
39
- deck_sources = $(wildcard ../deck/definitions/*/*.json) $(wildcard ../deck/schemas/*.json)
40
- labware_sources = $(wildcard ../labware/definitions/*/*.json) $(wildcard ../labware/schemas/*.json)
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- module_sources = $(wildcard ../module/definitions/*.json) $(wildcard ../module/definitions/*/*.json) $(wildcard ../module/schemas/*.json)
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- pipette_sources = $(wildcard ../pipette/definitions/*.json) $(wildcard ../pipette/schemas/*.json)
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- protocol_sources = $(wildcard ../protocol/schemas/*.json)
44
- gripper_sources = $(wildcard ../gripper/definitions/*.json) $(wildcard ../gripper/schemas/*.json)
45
-
46
- json_sources = $(deck_sources) $(labware_sources) $(module_sources) $(pipette_sources) $(protocol_sources) $(gripper_sources)
47
-
48
- tests ?= tests
49
-
50
- twine_auth_args := --username $(pypi_username) --password $(pypi_password)
51
- twine_repository_url ?= $(pypi_test_upload_url)
52
-
53
- clean_cmd = $(SHX) rm -rf build $(BUILD_DIR) .coverage coverage.xml '*.egg-info' ' **/__pycache__' '**/*.pyc' 'opentrons_shared_data/**/.mypy_cache'
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-
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- .PHONY: all
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- all: clean sdist wheel
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-
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- .PHONY: setup
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- setup: setup-py
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-
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- .PHONY: setup-py
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- setup-py:
63
- $(pipenv) sync $(pipenv_opts)
64
- $(pipenv) run pip freeze
65
-
66
- .PHONY: teardown
67
- teardown: teardown-py
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-
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- .PHONY: teardown-py
70
- teardown-py:
71
- $(pipenv) --rm
72
-
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-
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- .PHONY: clean
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- clean:
76
- $(clean_cmd)
77
-
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- .PHONY: wheel
79
- wheel: export OPENTRONS_PROJECT=$(project_rs_default)
80
- wheel: setup.py $(py_sources) $(json_sources)
81
- $(SHX) mkdir -p build
82
- $(python) setup.py $(wheel_opts) bdist_wheel
83
- $(SHX) ls $(BUILD_DIR)
84
-
85
-
86
- .PHONY: sdist
87
- sdist: export OPENTRONS_PROJECT=$(project_ot3_default)
88
- sdist: setup.py $(py_sources) $(json_sources)
89
- $(SHX) mkdir -p build
90
- $(python) setup.py sdist
91
- $(SHX) ls $(BUILD_DIR)
92
-
93
-
94
- .PHONY: lint
95
- lint: $(py_sources)
96
- $(python) -m mypy opentrons_shared_data tests
97
- $(python) -m black --check opentrons_shared_data tests setup.py
98
- $(python) -m flake8 opentrons_shared_data tests setup.py
99
-
100
- .PHONY: format
101
- format:
102
- $(python) -m black opentrons_shared_data tests setup.py
103
-
104
- .PHONY: push-no-restart
105
- push-no-restart: wheel
106
- $(call push-python-package,$(host),$(ssh_key),$(ssh_opts),$(wheel_file))
107
-
108
- .PHONY: push
109
- push: push-no-restart
110
- $(call restart-service,$(host),$(ssh_key),$(ssh_opts),opentrons-robot-server)
111
-
112
- .PHONY: push-no-restart-ot3
113
- push-no-restart-ot3: sdist
114
- $(call push-python-sdist,$(host),$(ssh_key),$(ssh_opts),$(sdist_file),/opt/opentrons-robot-server,opentrons_shared_data)
115
-
116
- .PHONY: push-ot3
117
- push-ot3: push-no-restart-ot3
118
- $(call restart-server,$(host),$(ssh_key),$(ssh_opts),opentrons-robot-server)
119
-
120
- .PHONY: deploy
121
- deploy: wheel
122
- $(call python_upload_package,$(twine_auth_args),$(twine_repository_url),$(wheel_file))
123
-
124
- .PHONY: test
125
- test:
126
- $(python) -m pytest --cov=opentrons_shared_data --cov-report xml:coverage.xml $(tests) $(test_opts)
127
-
128
-
129
- .PHONY: generate-schema
130
- generate-schema:
131
- $(python) -c "from opentrons_shared_data.$(target) import generate_schema; print(generate_schema())" > ../${target}/schemas/${version}.json
132
-
133
- %-schema:
134
- $(MAKE) generate-schema target=$*
package/python/Pipfile DELETED
@@ -1,28 +0,0 @@
1
- [[source]]
2
- url = "https://pypi.python.org/simple"
3
- verify_ssl = true
4
- name = "pypi"
5
-
6
- [dev-packages]
7
- mypy = "==0.800"
8
- flake8 = "~=3.9.0"
9
- flake8-annotations = "~=2.6.2"
10
- flake8-docstrings = "~=1.6.0"
11
- flake8-noqa = "~=1.2.1"
12
- twine = "==2.0.0"
13
- wheel = "==0.30.0"
14
- pytest = "==7.0.1"
15
- pytest-cov = "==2.10.1"
16
- pytest-xdist = "~=2.2.1 "
17
- typeguard = "~=2.13"
18
- # specify typing-extensions explicitly to force lockfile inclusion on Python >= 3.8
19
- typing-extensions = ">=4.0.0,<5"
20
- # pytest dependencies on windows, spec'd here to force lockfile inclusion
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- # https://github.com/pypa/pipenv/issues/4408#issuecomment-668324177
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- atomicwrites = { version = "==1.4.0", sys_platform = "== 'win32'" }
23
- colorama = { version = "==0.4.4", sys_platform = "== 'win32'" }
24
- black = "==22.3.0"
25
- pytest-clarity = "~=1.0.0"
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-
27
- [packages]
28
- opentrons-shared-data = { editable = true, path = "." }