@opentrons/shared-data 0.0.1-alpha.20 → 0.1.0-alpha.0

package/js/types.ts

@@ -1,600 +0,0 @@
-import {
-  MAGDECK,
-  TEMPDECK,
-  THERMOCYCLER,
-  MAGNETIC_MODULE_V1,
-  MAGNETIC_MODULE_V2,
-  TEMPERATURE_MODULE_V1,
-  TEMPERATURE_MODULE_V2,
-  THERMOCYCLER_MODULE_V1,
-  THERMOCYCLER_MODULE_V2,
-  HEATERSHAKER_MODULE_V1,
-  MAGNETIC_MODULE_TYPE,
-  TEMPERATURE_MODULE_TYPE,
-  THERMOCYCLER_MODULE_TYPE,
-  HEATERSHAKER_MODULE_TYPE,
-  MAGNETIC_BLOCK_TYPE,
-  GEN1,
-  GEN2,
-  FLEX,
-  LEFT,
-  RIGHT,
-  GRIPPER_V1,
-  GRIPPER_V1_1,
-  GRIPPER_V1_2,
-  EXTENSION,
-  MAGNETIC_BLOCK_V1,
-} from './constants'
-import type { INode } from 'svgson'
-import type { RunTimeCommand, LabwareLocation } from '../command/types'
-import type { AddressableAreaName, CutoutFixtureId, CutoutId } from '../deck'
-import type { PipetteName } from './pipettes'
-
-export type RobotType = 'OT-2 Standard' | 'OT-3 Standard'
-
-export interface RobotDefinition {
-  displayName: string
-  robotType: RobotType
-  models: string[]
-}
-
-// TODO Ian 2019-06-04 split this out into eg ../labware/flowTypes/labwareV1.js
-export interface WellDefinition {
-  diameter?: number
-  // NOTE: presence of diameter indicates a circular well
-  depth?: number
-  // TODO Ian 2018-03-12: depth should be required, but is missing in MALDI-plate
-  height: number
-  length: number
-  width: number
-  x: number
-  y: number
-  z: number
-  'total-liquid-volume': number
-}
-
-// typedef for labware definitions under v1 labware schema
-export interface LabwareDefinition1 {
-  metadata: {
-    name: string
-    format: string
-    deprecated?: boolean
-    displayName?: string
-    displayCategory?: string
-    isValidSource?: boolean
-    isTiprack?: boolean
-    tipVolume?: number
-  }
-  ordering: string[][]
-  wells: {
-    [well: string]: WellDefinition
-  }
-}
-
-// TODO(mc, 2019-05-29): Remove this enum in favor of string + exported
-// constants + unit tests to catch typos in our definitions. Make changes
-// here and in shared-data/labware/schemas/2.json
-export type LabwareDisplayCategory =
-  | 'wellPlate'
-  | 'tipRack'
-  | 'tubeRack'
-  | 'reservoir'
-  | 'aluminumBlock'
-  | 'trash'
-  | 'other'
-  | 'adapter'
-
-export type LabwareVolumeUnits = 'µL' | 'mL' | 'L'
-
-// TODO(mc, 2019-05-29): Remove this enum in favor of string + exported
-// constants + unit tests to catch typos in our definitions. Make changes
-// here and in shared-data/labware/schemas/2.json
-export type WellBottomShape = 'flat' | 'u' | 'v'
-
-export interface LabwareMetadata {
-  displayName: string
-  displayCategory: LabwareDisplayCategory
-  displayVolumeUnits: LabwareVolumeUnits
-  tags?: string[]
-}
-
-export interface LabwareDimensions {
-  xDimension: number
-  yDimension: number
-  zDimension: number
-}
-
-export interface Coordinates {
-  x: number
-  y: number
-  z: number
-}
-export type LabwareOffset = Coordinates
-
-// 1. Valid pipette type for a container (i.e. is there multi channel access?)
-// 2. Is the container a tiprack?
-export interface LabwareParameters {
-  loadName: string
-  format: string
-  isTiprack: boolean
-  tipLength?: number
-  isMagneticModuleCompatible: boolean
-  magneticModuleEngageHeight?: number
-  quirks?: string[]
-}
-
-export interface LabwareBrand {
-  brand: string
-  brandId?: string[]
-  links?: string[]
-}
-
-export type LabwareWellShapeProperties =
-  | {
-      shape: 'circular'
-      diameter: number
-    }
-  | {
-      shape: 'rectangular'
-      xDimension: number
-      yDimension: number
-    }
-
-// well without x,y,z
-export type LabwareWellProperties = LabwareWellShapeProperties & {
-  depth: number
-  totalLiquidVolume: number
-}
-
-export type LabwareWell = LabwareWellProperties & {
-  x: number
-  y: number
-  z: number
-}
-
-// TODO(mc, 2019-03-21): exact object is tough to use with the initial value in
-// reduce, so leaving this inexact (e.g. `const a: {||} = {}` errors)
-export type LabwareWellMap = Record<string, LabwareWell>
-
-export interface LabwareWellGroupMetadata {
-  displayName?: string
-  displayCategory?: LabwareDisplayCategory
-  wellBottomShape?: WellBottomShape
-}
-
-export interface LabwareWellGroup {
-  wells: string[]
-  metadata: LabwareWellGroupMetadata
-  brand?: LabwareBrand
-}
-
-export type LabwareRoles = 'labware' | 'adapter' | 'fixture' | 'maintenance'
-
-// NOTE: must be synced with shared-data/labware/schemas/2.json
-export interface LabwareDefinition2 {
-  version: number
-  schemaVersion: 2
-  namespace: string
-  metadata: LabwareMetadata
-  dimensions: LabwareDimensions
-  cornerOffsetFromSlot: LabwareOffset
-  parameters: LabwareParameters
-  brand: LabwareBrand
-  ordering: string[][]
-  wells: LabwareWellMap
-  groups: LabwareWellGroup[]
-  allowedRoles?: LabwareRoles[]
-}
-
-export type ModuleType =
-  | typeof MAGNETIC_MODULE_TYPE
-  | typeof TEMPERATURE_MODULE_TYPE
-  | typeof THERMOCYCLER_MODULE_TYPE
-  | typeof HEATERSHAKER_MODULE_TYPE
-  | typeof MAGNETIC_BLOCK_TYPE
-
-// ModuleModel corresponds to top-level keys in shared-data/module/definitions/2
-export type MagneticModuleModel =
-  | typeof MAGNETIC_MODULE_V1
-  | typeof MAGNETIC_MODULE_V2
-
-export type TemperatureModuleModel =
-  | typeof TEMPERATURE_MODULE_V1
-  | typeof TEMPERATURE_MODULE_V2
-
-export type ThermocyclerModuleModel =
-  | typeof THERMOCYCLER_MODULE_V1
-  | typeof THERMOCYCLER_MODULE_V2
-
-export type HeaterShakerModuleModel = typeof HEATERSHAKER_MODULE_V1
-
-export type MagneticBlockModel = typeof MAGNETIC_BLOCK_V1
-
-export type ModuleModel =
-  | MagneticModuleModel
-  | TemperatureModuleModel
-  | ThermocyclerModuleModel
-  | HeaterShakerModuleModel
-  | MagneticBlockModel
-
-export type GripperModel =
-  | typeof GRIPPER_V1
-  | typeof GRIPPER_V1_1
-  | typeof GRIPPER_V1_2
-
-export type ModuleModelWithLegacy =
-  | ModuleModel
-  | typeof THERMOCYCLER
-  | typeof MAGDECK
-  | typeof TEMPDECK
-
-export interface Dimensions {
-  xDimension: number
-  yDimension: number
-  zDimension: number
-}
-
-export interface DeckRobot {
-  model: RobotType
-}
-
-export type CoordinateTuple = [number, number, number]
-
-export type UnitDirection = 1 | -1
-
-export type UnitVectorTuple = [UnitDirection, UnitDirection, UnitDirection]
-
-export type DeckSlotId = string
-
-export interface DeckSlot {
-  id: DeckSlotId
-  position: CoordinateTuple
-  matingSurfaceUnitVector?: UnitVectorTuple
-  boundingBox: Dimensions
-  displayName: string
-  compatibleModules: ModuleType[]
-}
-
-export interface DeckCalibrationPoint {
-  id: string
-  position: CoordinateTuple
-  displayName: string
-}
-
-export interface CutoutFixture {
-  id: CutoutFixtureId
-  mayMountTo: CutoutId[]
-  displayName: string
-  providesAddressableAreas: Record<CutoutId, AddressableAreaName[]>
-}
-
-type AreaType = 'slot' | 'movableTrash' | 'wasteChute' | 'fixedTrash'
-
-export interface AddressableArea {
-  id: AddressableAreaName
-  areaType: AreaType
-  offsetFromCutoutFixture: CoordinateTuple
-  boundingBox: Dimensions
-  displayName: string
-  compatibleModuleTypes: ModuleType[]
-  ableToDropLabware?: boolean
-  ableToDropTips?: boolean
-  dropLabwareOffset?: CoordinateTuple
-  dropTipsOffset?: CoordinateTuple
-  matingSurfaceUnitVector?: UnitVectorTuple
-}
-
-export interface DeckMetadata {
-  displayName: string
-  tags: string[]
-}
-
-export interface DeckCutout {
-  id: string
-  position: CoordinateTuple
-  displayName: string
-}
-
-export interface LegacyFixture {
-  id: string
-  slot: string
-  labware: string
-  displayName: string
-}
-
-export interface DeckLocations {
-  addressableAreas: AddressableArea[]
-  calibrationPoints: DeckCalibrationPoint[]
-  cutouts: DeckCutout[]
-  legacyFixtures: LegacyFixture[]
-}
-
-export interface DeckDefinition {
-  otId: string
-  cornerOffsetFromOrigin: CoordinateTuple
-  dimensions: CoordinateTuple
-  robot: DeckRobot
-  locations: DeckLocations
-  metadata: DeckMetadata
-  cutoutFixtures: CutoutFixture[]
-}
-
-export interface ModuleDimensions {
-  bareOverallHeight: number
-  overLabwareHeight: number
-  xDimension: number
-  yDimension: number
-  footprintXDimension?: number
-  footprintYDimension?: number
-  labwareInterfaceXDimension?: number
-  labwareInterfaceYDimension?: number
-  lidHeight?: number
-}
-
-export interface ModuleCalibrationPoint {
-  x: number
-  y: number
-  z?: number
-}
-
-export interface ModuleLayer {
-  name: string
-  pathDValues: string[]
-}
-
-// module definition that adheres to the v3 module json schema
-export interface ModuleDefinition {
-  moduleType: ModuleType
-  model: ModuleModel
-  labwareOffset: Coordinates
-  dimensions: ModuleDimensions
-  cornerOffsetFromSlot: Coordinates
-  calibrationPoint: ModuleCalibrationPoint
-  displayName: string
-  quirks: string[]
-  slotTransforms: SlotTransforms
-  compatibleWith: ModuleModel[]
-  twoDimensionalRendering: INode
-}
-
-export type AffineTransformMatrix = number[][]
-
-export interface SlotTransforms {
-  [deckOtId: string]: {
-    [slotId: string]: {
-      [transformKey in keyof ModuleDefinition]?: AffineTransformMatrix
-    }
-  }
-}
-
-export type ModuleOrientation = 'left' | 'right'
-
-export type PipetteChannels = 1 | 8 | 96
-
-export type PipetteDisplayCategory = typeof GEN1 | typeof GEN2 | typeof FLEX
-
-export type PipetteMount = typeof LEFT | typeof RIGHT
-export type GantryMount = typeof LEFT | typeof RIGHT | typeof EXTENSION
-export interface FlowRateSpec {
-  value: number
-  min: number
-  max: number
-}
-
-export interface PipetteNameSpecs {
-  name: string
-  displayName: string
-  displayCategory: PipetteDisplayCategory
-  minVolume: number
-  maxVolume: number
-  channels: PipetteChannels
-  defaultAspirateFlowRate: FlowRateSpec
-  defaultDispenseFlowRate: FlowRateSpec
-  defaultBlowOutFlowRate: FlowRateSpec
-  defaultTipracks: string[]
-  smoothieConfigs?: {
-    stepsPerMM: number
-    homePosition: number
-    travelDistance: number
-  }
-}
-
-// TODO(bc, 2021-05-27): the type of `model` here should be PipetteModel
-// TODO(mc, 2019-10-14): update this type according to the schema
-export interface PipetteModelSpecs extends PipetteNameSpecs {
-  model: string
-  backCompatNames?: string[]
-  tipLength: {
-    value: number
-  }
-}
-export interface ProtocolMetadata {
-  protocolName?: string
-  author?: string
-  description?: string | null
-  created?: number
-  lastModified?: number | null
-  category?: string | null
-  subcategory?: string | null
-  tags?: string[]
-  [key: string]: unknown
-}
-export interface PendingProtocolAnalysis {
-  id: string
-  status?: 'pending'
-}
-export interface ProtocolAnalysisSummary {
-  id: string
-  status: 'pending' | 'completed'
-}
-export interface LoadedPipette {
-  id: string
-  pipetteName: PipetteName
-  mount: 'left' | 'right'
-}
-export interface LoadedLabware {
-  id: string
-  loadName: string
-  definitionUri: string
-  location: LabwareLocation
-  offsetId?: string
-  displayName?: string
-}
-export interface LoadedModule {
-  id: string
-  model: ModuleModel
-  location: {
-    slotName: string
-  }
-  serialNumber: string
-}
-export interface Liquid {
-  id: string
-  displayName: string
-  description: string
-  displayColor?: string
-}
-
-export interface AnalysisError {
-  id: string
-  detail: string
-  errorType: string
-  createdAt: string
-}
-
-// TODO(BC, 10/25/2023): this type (and others in this file) probably belong in api-client, not here
-export interface CompletedProtocolAnalysis {
-  id: string
-  status?: 'completed'
-  result: 'ok' | 'not-ok' | 'error'
-  pipettes: LoadedPipette[]
-  labware: LoadedLabware[]
-  modules: LoadedModule[]
-  liquids: Liquid[]
-  commands: RunTimeCommand[]
-  errors: AnalysisError[]
-  robotType?: RobotType | null
-}
-
-export interface ResourceFile {
-  name: string
-  role: string
-}
-export interface ProtocolResource {
-  id: string
-  createdAt: string
-  protocolType: 'json' | 'python'
-  robotType: RobotType
-  metadata: ProtocolMetadata
-  analysisSummaries: ProtocolAnalysisSummary[]
-  files: ResourceFile[]
-  key?: string
-}
-
-export interface ProtocolAnalysesResource {
-  analyses: Array<PendingProtocolAnalysis | CompletedProtocolAnalysis>
-}
-export type MotorAxis =
-  | 'x'
-  | 'y'
-  | 'leftZ'
-  | 'rightZ'
-  | 'leftPlunger'
-  | 'rightPlunger'
-  | 'extensionZ'
-  | 'extensionJaw'
-
-export type MotorAxes = MotorAxis[]
-
-export type ThermalAdapterName =
-  | 'PCR Adapter'
-  | 'Deep Well Adapter'
-  | '96 Flat Bottom Adapter'
-  | 'Universal Flat Adapter'
-
-// gripper definition that adheres to the v1 gripper json schema
-export interface GripperDefinition {
-  $otSharedSchema: string
-  model: GripperModel
-  schemaVersion: number
-  displayName: string
-  zMotorConfigurations: { idle: number; run: number }
-  jawMotorConfigurations: { vref: number }
-  gripForceProfile: {
-    polynomial: [[number, number], [number, number]]
-    defaultGripForce: number
-    defaultHomeForce: number
-    defaultIdleForce: number
-    min: number
-    max: number
-  }
-  geometry: {
-    baseOffsetFromMount: [number, number, number]
-    jawCenterOffsetFromBase: [number, number, number]
-    pinOneOffsetFromBase: [number, number, number]
-    pinTwoOffsetFromBase: [number, number, number]
-    jawWidth: { min: number; max: number }
-  }
-}
-
-export type StatusBarAnimation =
-  | 'idle'
-  | 'confirm'
-  | 'updating'
-  | 'disco'
-  | 'off'
-
-export type StatusBarAnimations = StatusBarAnimation[]
-
-export type Cutout =
-  | 'cutoutA1'
-  | 'cutoutB1'
-  | 'cutoutC1'
-  | 'cutoutD1'
-  | 'cutoutA2'
-  | 'cutoutB2'
-  | 'cutoutC2'
-  | 'cutoutD2'
-  | 'cutoutA3'
-  | 'cutoutB3'
-  | 'cutoutC3'
-  | 'cutoutD3'
-
-export type OT2Cutout =
-  | 'cutout1'
-  | 'cutout2'
-  | 'cutout3'
-  | 'cutout4'
-  | 'cutout5'
-  | 'cutout6'
-  | 'cutout7'
-  | 'cutout8'
-  | 'cutout9'
-  | 'cutout10'
-  | 'cutout11'
-  | 'cutout12'
-
-export type FlexSlot =
-  | 'A1'
-  | 'B1'
-  | 'C1'
-  | 'D1'
-  | 'A2'
-  | 'B2'
-  | 'C2'
-  | 'D2'
-  | 'A3'
-  | 'B3'
-  | 'C3'
-  | 'D3'
-  | 'A4'
-  | 'B4'
-  | 'C4'
-  | 'D4'
-
-export interface CutoutConfig {
-  cutoutId: CutoutId
-  cutoutFixtureId: CutoutFixtureId | null
-}
-
-export type DeckConfiguration = CutoutConfig[]

package/python/.coveragerc

@@ -1,4 +0,0 @@
-[report]
-exclude_lines =
-    @overload
-    if TYPE_CHECKING:

package/python/.flake8

@@ -1,32 +0,0 @@
-[flake8]
-
-# max cyclomatic complexity
-max-complexity = 9
-
-extend-ignore =
-    # defer formatting concerns to black
-    # E203: space around `:` operator
-    # E501: maximum line length
-    E203,
-    E501,
-    # do not require type annotations for self nor cls
-    ANN101,
-    ANN102
-
-# configure flake8-docstrings
-# https://pypi.org/project/flake8-docstrings/
-docstring-convention = google
-
-noqa-require-code = true
-
-# TODO(mc, 2021-04-12): this config ignores type annotation and doc
-# string lints in these modules; remove entries as they are fixed
-per-file-ignores =
-    setup.py:ANN,D
-    opentrons_shared_data/load.py:ANN,D
-    opentrons_shared_data/deck/*:ANN,D
-    opentrons_shared_data/labware/*:ANN,D
-    opentrons_shared_data/module/*:ANN,D
-    opentrons_shared_data/pipette/*:ANN,D
-    opentrons_shared_data/protocol/*:ANN,D
-    tests/*:ANN,D

package/python/Config.in

@@ -1,10 +0,0 @@
-config BR2_PACKAGE_PYTHON_OPENTRONS_SHARED_DATA
-  bool "python-opentrons-shared-data"
-  depends on BR2_PACKAGE_PYTHON3
-  select BR2_PACKAGE_PYTHON_JSONSCHEMA # runtime
-  select BR2_PACKAGE_PYTHON_TYPING_EXTENSIONS # runtime
-
-  help
-    Opentrons data sources. Used on an OT-2 robot.
-
-    https://opentrons.com