@openhealth/oht-custom-parser-lib 0.5.62 → 0.5.63

package/dist/util-ts/loincMapping.js

@@ -0,0 +1,81 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getEffectiveLoincMapping = getEffectiveLoincMapping;
+exports.buildLoincMappingByOhtBmId = buildLoincMappingByOhtBmId;
+const UUID_RE = /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i;
+function trimField(value) {
+    return (value ?? '').trim();
+}
+function normalizeLoincCodeKey(code) {
+    return trimField(code).replace(/\s+/g, '');
+}
+function extractUuid(value) {
+    const trimmed = trimField(value);
+    if (!trimmed) {
+        return undefined;
+    }
+    const lower = trimmed.toLowerCase();
+    return UUID_RE.test(lower) ? lower : undefined;
+}
+function normalizeLoincMapping(lm) {
+    if (!lm) {
+        return undefined;
+    }
+    const loincCode = normalizeLoincCodeKey(lm.loincCode ?? '');
+    const bmObjectUuid = extractUuid(lm.bmObjectUuid);
+    if (!loincCode && !bmObjectUuid) {
+        return undefined;
+    }
+    const result = {};
+    if (loincCode) {
+        result.loincCode = loincCode;
+    }
+    if (bmObjectUuid) {
+        result.bmObjectUuid = bmObjectUuid;
+    }
+    return result;
+}
+/** Prefer structured loincMapping; fall back to legacy taggedLoincCode. */
+function getEffectiveLoincMapping(mapping) {
+    if (!mapping) {
+        return undefined;
+    }
+    const fromStructured = normalizeLoincMapping(mapping.loincMapping);
+    if (fromStructured) {
+        return fromStructured;
+    }
+    const tagged = trimField(mapping.taggedLoincCode);
+    if (!tagged) {
+        return undefined;
+    }
+    const uuid = extractUuid(tagged);
+    if (uuid && uuid === tagged.toLowerCase()) {
+        return { bmObjectUuid: uuid };
+    }
+    const codeKey = normalizeLoincCodeKey(tagged);
+    if (codeKey) {
+        return { loincCode: codeKey };
+    }
+    return undefined;
+}
+/** Build ohtBmId → effective loincMapping from fetched partner biomarker mappings. */
+function buildLoincMappingByOhtBmId(mappedBiomarkers) {
+    const index = new Map();
+    if (!mappedBiomarkers) {
+        return index;
+    }
+    for (const mapping of Object.values(mappedBiomarkers)) {
+        if (!mapping || mapping.isIgnored || mapping.ohtBmId <= 0) {
+            continue;
+        }
+        const effective = getEffectiveLoincMapping(mapping);
+        if (!effective) {
+            continue;
+        }
+        if (!index.has(mapping.ohtBmId)) {
+            index.set(mapping.ohtBmId, effective);
+        }
+    }
+    return index;
+}
+//# sourceMappingURL=loincMapping.js.map

package/dist/util-ts/loincMapping.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@openhealth/oht-custom-parser-lib",
-  "version": "0.5.62",
+  "version": "0.5.63",
   "description": "Shared nodejs lib with with reusable functions",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

package/dist/service/ohtAgnosticMeasurementsExtractor.service.d.ts

@@ -1,59 +0,0 @@
-import { LabToOhtContract, LabToOhtMapper, RangeExtractionResponse, SynonymUnit, UnknownUnits, TransformationRulesChains } from "../types/custom-parser.types";
-import { Biomarker, BiomarkerValueType, Measurement, MeasurementValueComparator, PatientInfo, UnknownMeasurement, Exam } from "../types/oht.types";
-/**
- * Extracts unit from rawData (OhtExam object)
- * @param rawData - OhtExam object (not a JSON string)
- * @param ohtBiomarker - Biomarker information
- * @param synonymUnits - Synonym units for unit resolution
- * @param partnerId - Partner ID for synonym resolution
- */
-declare function agnosticExtractUnit(rawData: any, ohtBiomarker: Biomarker, synonymUnits?: SynonymUnit[] | null, partnerId?: string | null | undefined): {
-    unit: string;
-    isUnitParsedCorrectly: boolean;
-    originalUnit: string;
-    isArbitraryUnit: boolean;
-    unknownUnit: string;
-};
-/**
- * Extracts reference annotation from rawExam (OhtExam object)
- * @param labToOhtMapper - Lab to OHT mapper configuration
- * @param rawExam - OhtExam object (not a JSON string)
- * @param patientInfo - Patient information
- * @param documentDate - Document date
- * @param exams - Array of exams for appended mappings
- */
-declare function agnosticExtractReferenceAnnotation(labToOhtMapper: LabToOhtMapper, rawExam: any, patientInfo: PatientInfo, documentDate?: Date, exams?: Exam[]): string;
-/**
- * Extracts reference ranges from rawData (OhtExam object)
- * Always uses parseRange function from extractionUtils for range extraction
- */
-declare function agnosticExtractReferenceRanges(labToOhtMapper: LabToOhtMapper, rawData: any, patientInfo: PatientInfo, documentDate?: Date): RangeExtractionResponse;
-declare function agnosticExtractValueFromGreaterLowerThan(value: string): {
-    extractedValue: number | null;
-    extractedValueComparator: MeasurementValueComparator | null;
-    valueParsedCorrectly: boolean;
-};
-/**
- * Parses exam value from rawExamObj (OhtExam object)
- * Now uses value directly from ohtExam
- */
-declare function agnosticParseExamValue(rawExamObj: any, ohtBiomarker: Biomarker): {
-    valueType: BiomarkerValueType;
-    alphanumericalValue: string | null;
-    numberValue: number | null;
-    valueComparator: MeasurementValueComparator;
-    isValueParsedCorrectly: boolean;
-};
-declare function agnosticCheckValueForPlausibleValues(labToOhtMapper: LabToOhtMapper, ohtBiomarker: Biomarker, unit: string, value: number, isUnitParsedCorrectly: boolean): boolean;
-type ApplyTransformationRulesResult = {
-    transformedExams: Exam[];
-    applicationErrorMessages: string[];
-};
-declare function ohtAgnosticMeasurementsExtractor(labToOhtContract: LabToOhtContract, exams: Exam[], transformationRules: TransformationRulesChains, ohtCoreApiKey: string, partnerId?: string | null | undefined): Promise<{
-    measurements: Measurement[];
-    unknownMeasurements: UnknownMeasurement[];
-    unknownUnits: UnknownUnits[];
-    isReportCorrectlyParsed: boolean;
-    transformationRulesErrors: string[];
-}>;
-export { ApplyTransformationRulesResult, ohtAgnosticMeasurementsExtractor, agnosticCheckValueForPlausibleValues, agnosticExtractReferenceRanges, agnosticExtractReferenceAnnotation, agnosticParseExamValue, agnosticExtractUnit, agnosticExtractValueFromGreaterLowerThan };