@openhealth/oht-custom-parser-lib 0.5.62 → 0.5.63

package/dist/index.d.ts

@@ -1,4 +1,4 @@
-export { postDataImportFileUploadToCore, postReportPreviewToCore } from './service/reportCreator.service';
+export { postDataImportFileUploadToCore, postReportPreviewToCore, alignOhtExamAgnosticUpdatedWithMeasurements, } from './service/reportCreator.service';
 export { parseExternalPatientId, parseGender, isPatientAgeValid, getPatientAge, handleRejection, queryFileUploadsWithFilters, postFileUploadSetStatus, DigitalizationUpdateFields, getPartnerTransformationRules, } from './service/auxiliaryFunctions.service';
 export { ohtReportMeasurementsExtractor, } from './service/ohtReportMeasurementsExtractor.service';
 export { ohtMeasurementsExtractor, checkValueForPlausibleValues, extractReferenceRanges, extractReferenceAnnotation, parseExamValue, getRangeFromPositionAndRegex, extractUnit, extractValueFromGreaterLowerThan } from './service/ohtMeasurementsExtractor.service';
@@ -6,7 +6,7 @@ export { getSlackFileIssueNotificationMessage, sendMessageToSlack } from './serv
 export { aggregateMessages, aggregateBiMessages, publishToTopic, generateBIMessages } from './service/errorHandling.service';
 export { applyRules as applyTransformationRules, validateJsonataExpression as validateTransformationRuleExpression, } from './service/transformationRules.service';
 export { LabToOhtContract, LabToOhtMapper, UnknownMeasurementExtraction, ReferenceAsAnnotation, UnitExtraction, RangeExtraction, RangeExtractionResponse, ValueExtraction, unitSynonyms, ValueExtractionResponse, SynonymUnit, UnknownUnits, TransformationRulesChains, } from './types/custom-parser.types';
-export { AcfBiomarkerRangeAnnotationCheck, AcfBiomarkerGenericDisclaimerLogic, ManualCheck, BiomarkerCompatibility, ReferenceRangeType, AcfReferenceRange, VisualRange, NameAlias, AlternativeUnit, BiomarkerAcf, Biomarker, PipelineStep, DigitizationStatus, MeasurementValueComparator, BiomarkerValueType, DataImportFileUploadStatus, Sex, Digitization, PatientInfo, UnknownMeasurement, UnmappedLabKey, Measurement, DataImportFileUpload, MessagePayload, SignedUpload, ReportStyleConfig, LanguageCode, BiomarkerCustomisation, PartnerCustomPanel, ReportDisplaySettings, ReportCustomisation, OHTPartner, UploadType, PartnerCustomization, RejectReason, AnnotationLabKey, ExtractionPath, AnnotationConfig, OhtReport, OhtMetadata, OhtPatient, Exam, OhtExam, ExamKind, OhtRange, OriginalExam, } from './types/oht.types';
+export { AcfBiomarkerRangeAnnotationCheck, AcfBiomarkerGenericDisclaimerLogic, ManualCheck, BiomarkerCompatibility, ReferenceRangeType, AcfReferenceRange, VisualRange, NameAlias, AlternativeUnit, BiomarkerAcf, Biomarker, PipelineStep, DigitizationStatus, MeasurementValueComparator, BiomarkerValueType, DataImportFileUploadStatus, Sex, Digitization, PatientInfo, UnknownMeasurement, UnmappedLabKey, Measurement, DataImportFileUpload, MessagePayload, SignedUpload, ReportStyleConfig, LanguageCode, BiomarkerCustomisation, PartnerCustomPanel, ReportDisplaySettings, ReportCustomisation, OHTPartner, UploadType, PartnerCustomization, RejectReason, AnnotationLabKey, ExtractionPath, AnnotationConfig, OhtReport, OhtMetadata, OhtPatient, Exam, OhtExam, OhtExamAgnosticProcessing, OhtExamAgnosticUpdated, ExamKind, OhtRange, OriginalExam, } from './types/oht.types';
 export { ErrorMessage, ErrorCode, ERROR_CATALOG, ERROR_MESSAGES, getErrorMessage, getRejectReason, ParsingErrorType, ParsingErrorSeverity, PARSING_ERROR_CATALOG, LocalParsingError, ErrorProfilePayload, RecordParsingErrorDetails, } from './types/error.types';
 export { handleError, ValidationError, JSON_VALIDATION_ERROR_NAME, shouldSendSlackNotification, extractFormattedRejectReason, mapErrorToRejectReason, } from './service/fileUploadErrorHandler.service';
 export type { TransformationRule, TransformationContext, ApplyRulesResult as TransformationApplyRulesResult, ApplyRulesOptions as TransformationApplyRulesOptions, ValidationResult as TransformationValidationResult, } from './types/transformationRules.types';

package/dist/index.js

@@ -3,12 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ValidationError = exports.handleError = exports.PARSING_ERROR_CATALOG = exports.ParsingErrorType = exports.getRejectReason = exports.getErrorMessage = exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = exports.RejectReason = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.validateTransformationRuleExpression = exports.applyTransformationRules = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.ohtReportMeasurementsExtractor = exports.getPartnerTransformationRules = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.getPatientAge = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postReportPreviewToCore = exports.postDataImportFileUploadToCore = void 0;
-exports.mapToOhtReport = exports.fetchActiveMappingRules = exports.lisXmlToJson = exports.lisCsvToExamRows = exports.parseRange = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.applyFormat = exports.extractFromPath = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.partnerSiloPath = exports.normalizePartnerMappingKey = exports.clearParsingErrorRequestState = exports.initParsingErrorRequestState = exports.parsingErrorService = exports.runWithContextAsync = exports.runWithContext = exports.getRequestScopedFilename = exports.getCurrentRequestId = exports.getRequestIdFromContext = exports.processingLogger = exports.mapErrorToRejectReason = exports.extractFormattedRejectReason = exports.shouldSendSlackNotification = exports.JSON_VALIDATION_ERROR_NAME = void 0;
+exports.handleError = exports.PARSING_ERROR_CATALOG = exports.ParsingErrorType = exports.getRejectReason = exports.getErrorMessage = exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = exports.RejectReason = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.validateTransformationRuleExpression = exports.applyTransformationRules = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.ohtReportMeasurementsExtractor = exports.getPartnerTransformationRules = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.getPatientAge = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.alignOhtExamAgnosticUpdatedWithMeasurements = exports.postReportPreviewToCore = exports.postDataImportFileUploadToCore = void 0;
+exports.mapToOhtReport = exports.fetchActiveMappingRules = exports.lisXmlToJson = exports.lisCsvToExamRows = exports.parseRange = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.applyFormat = exports.extractFromPath = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.partnerSiloPath = exports.normalizePartnerMappingKey = exports.clearParsingErrorRequestState = exports.initParsingErrorRequestState = exports.parsingErrorService = exports.runWithContextAsync = exports.runWithContext = exports.getRequestScopedFilename = exports.getCurrentRequestId = exports.getRequestIdFromContext = exports.processingLogger = exports.mapErrorToRejectReason = exports.extractFormattedRejectReason = exports.shouldSendSlackNotification = exports.JSON_VALIDATION_ERROR_NAME = exports.ValidationError = void 0;
 // ### SERVICES ###
 var reportCreator_service_1 = require("./service/reportCreator.service");
 Object.defineProperty(exports, "postDataImportFileUploadToCore", { enumerable: true, get: function () { return reportCreator_service_1.postDataImportFileUploadToCore; } });
 Object.defineProperty(exports, "postReportPreviewToCore", { enumerable: true, get: function () { return reportCreator_service_1.postReportPreviewToCore; } });
+Object.defineProperty(exports, "alignOhtExamAgnosticUpdatedWithMeasurements", { enumerable: true, get: function () { return reportCreator_service_1.alignOhtExamAgnosticUpdatedWithMeasurements; } });
 var auxiliaryFunctions_service_1 = require("./service/auxiliaryFunctions.service");
 Object.defineProperty(exports, "parseExternalPatientId", { enumerable: true, get: function () { return auxiliaryFunctions_service_1.parseExternalPatientId; } });
 Object.defineProperty(exports, "parseGender", { enumerable: true, get: function () { return auxiliaryFunctions_service_1.parseGender; } });

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/service/ohtReportMeasurementsExtractor.service.d.ts

@@ -151,5 +151,6 @@ declare function ohtReportMeasurementsExtractor(isReportPreview: boolean, exams:
     unknownUnits: UnknownUnits[];
     unmappedLabKeys: UnmappedLabKey[];
     isReportCorrectlyParsed: boolean;
+    labKeyBiomarkerIds: Record<string, number>;
 }>;
 export { ohtReportMeasurementsExtractor, };

package/dist/service/ohtReportMeasurementsExtractor.service.js

@@ -241,6 +241,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
     const unknownMeasurements = [];
     const unknownUnits = [];
     const unmappedLabKeys = [];
+    const labKeyBiomarkerIds = {};
     let isReportCorrectlyParsed = true;
     // Check if we have exams
     const labKeys = exams.map(e => e.ohtExam.labKey);
@@ -256,6 +257,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
             unknownUnits,
             unmappedLabKeys,
             isReportCorrectlyParsed: false,
+            labKeyBiomarkerIds,
         };
     }
     processingLogger_service_1.processingLogger.logInfo(`Processing lab file with ${labKeys.length} keys, filename: ${(0, processingLogger_service_1.getRequestScopedFilename)(filename)}`);
@@ -310,7 +312,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
         const labKey = exam.ohtExam.labKey;
         const backendMapping = mappedBiomarkers?.[labKey];
         if (backendMapping && !backendMapping.isIgnored) {
-            const { ohtBmId } = (0, extractionUtils_1.handleBiomarkerId)(backendMapping, labKey);
+            const { ohtBmId } = (0, extractionUtils_1.handleBiomarkerId)(backendMapping, labKey, isReportPreview);
             if (ohtBmId && ohtBmId !== -1) {
                 allPossibleOHTBmIds.push(ohtBmId);
             }
@@ -377,7 +379,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
         let finalOhtBmId;
         let annotationConfig;
         if (backendMapping) {
-            const { ohtBmId, annotationConfig: config } = (0, extractionUtils_1.handleBiomarkerId)(backendMapping, labKey);
+            const { ohtBmId, annotationConfig: config } = (0, extractionUtils_1.handleBiomarkerId)(backendMapping, labKey, isReportPreview);
             finalOhtBmId = ohtBmId;
             annotationConfig = {
                 enabled: config.enabled,
@@ -602,6 +604,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
                 originalName: originalName,
             };
             measurements.push(measurement);
+            labKeyBiomarkerIds[labKey] = ohtBiomarker.id;
             isReportCorrectlyParsed = isReportCorrectlyParsed && isMeasurementCorrectlyParsed;
         }
         else {
@@ -656,6 +659,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
         unknownUnits,
         unmappedLabKeys,
         isReportCorrectlyParsed,
+        labKeyBiomarkerIds,
     };
 }
 //# sourceMappingURL=ohtReportMeasurementsExtractor.service.js.map

package/dist/service/ohtReportMeasurementsExtractor.service.js.map

@@ -1 +1 @@
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package/dist/service/reportCreator.service.d.ts

@@ -1,9 +1,14 @@
-import { DataImportFileUpload, UnknownMeasurementsBulk, Measurement, UnknownMeasurement } from '../types/oht.types';
+import { DataImportFileUpload, UnknownMeasurementsBulk, Measurement, UnknownMeasurement, Exam, OhtExamAgnosticUpdated } from '../types/oht.types';
 import { UnknownUnits } from '../types/custom-parser.types';
+/**
+ * Builds OhtExamAgnosticUpdated payloads for the report-preview callback: aligns ohtExamAgnosticUpdated
+ * unit/value with extracted measurements and attaches agnostic-processing metadata for oht-core assertions.
+ */
+declare function alignOhtExamAgnosticUpdatedWithMeasurements(transformedExams: Exam[], measurements: Measurement[], labKeyBiomarkerIds: Record<string, number>, appliedRulesByLabKey: Record<string, string[]>): OhtExamAgnosticUpdated[];
 /**
  * Posts report preview data (measurements and unknownMeasurements) to OHT Core API.
  * Uses the shared makeApiCallWithRetry helper (Basic auth) from oht-custom-parser-lib.
  */
-declare function postReportPreviewToCore(reportPreviewId: string, measurements: Measurement[], unknownMeasurements: UnknownMeasurement[], filename: string, unknownUnits: UnknownUnits[], partnerId: string, isReportParsedCorrectly: boolean, notes: string, ohtCoreApiKey: string): Promise<void>;
+declare function postReportPreviewToCore(reportPreviewId: string, measurements: Measurement[], unknownMeasurements: UnknownMeasurement[], filename: string, unknownUnits: UnknownUnits[], partnerId: string, isReportParsedCorrectly: boolean, notes: string, ohtCoreApiKey: string, ohtExamAgnosticUpdated?: OhtExamAgnosticUpdated[]): Promise<void>;
 declare function postDataImportFileUploadToCore(dataImportFileUpload: DataImportFileUpload, unknownMeasurements: UnknownMeasurementsBulk, unknownUnits: UnknownUnits[], rejectedStatus: string | undefined, rejectReason: string | undefined, isReportParsedCorrectly: boolean, filename: string, ohtCoreApiKey: string, partnerMappingKey?: string): Promise<DataImportFileUpload | null>;
-export { postDataImportFileUploadToCore, postReportPreviewToCore };
+export { postDataImportFileUploadToCore, postReportPreviewToCore, alignOhtExamAgnosticUpdatedWithMeasurements };

package/dist/service/reportCreator.service.js

@@ -5,6 +5,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.postDataImportFileUploadToCore = postDataImportFileUploadToCore;
 exports.postReportPreviewToCore = postReportPreviewToCore;
+exports.alignOhtExamAgnosticUpdatedWithMeasurements = alignOhtExamAgnosticUpdatedWithMeasurements;
 const oht_types_1 = require("../types/oht.types");
 const processingLogger_service_1 = require("./processingLogger.service");
 const dotenv_1 = __importDefault(require("dotenv"));
@@ -13,11 +14,48 @@ const apiUtils_1 = require("../util-ts/apiUtils");
 const errorHandling_service_1 = require("./errorHandling.service");
 dotenv_1.default.config({ path: `.env.local` });
 const OHT_CORE_URL = process.env.OHT_CORE_URL;
+function normalizeUnitForComparison(unit) {
+    return unit?.toLowerCase().replaceAll(/ /g, '') ?? '';
+}
+/**
+ * Builds OhtExamAgnosticUpdated payloads for the report-preview callback: aligns ohtExamAgnosticUpdated
+ * unit/value with extracted measurements and attaches agnostic-processing metadata for oht-core assertions.
+ */
+function alignOhtExamAgnosticUpdatedWithMeasurements(transformedExams, measurements, labKeyBiomarkerIds, appliedRulesByLabKey) {
+    const measurementsByBiomarkerId = new Map(measurements.map((m) => [m.biomarkerId, m]));
+    return transformedExams.map((exam) => {
+        const labKey = exam.ohtExam.labKey;
+        const biomarkerId = labKeyBiomarkerIds[labKey];
+        const measurement = biomarkerId != null ? measurementsByBiomarkerId.get(biomarkerId) : undefined;
+        const appliedRuleIds = appliedRulesByLabKey[labKey] ?? [];
+        const unitBeforeSynonym = exam.ohtExam.unit ?? '';
+        const ohtExamAgnosticUpdated = measurement
+            ? {
+                ...exam.ohtExam,
+                unit: measurement.unit,
+                value: measurement.value != null
+                    ? String(measurement.value)
+                    : measurement.alphanumericValue ?? exam.ohtExam.value,
+            }
+            : { ...exam.ohtExam };
+        const ohtExamAgnosticProcessing = {
+            transformationRulesApplied: appliedRuleIds.length > 0,
+            synonymUnitApplied: measurement
+                ? normalizeUnitForComparison(unitBeforeSynonym) !==
+                    normalizeUnitForComparison(measurement.unit)
+                : false,
+            ...(appliedRuleIds.length > 0
+                ? { appliedTransformationRuleIds: appliedRuleIds }
+                : {}),
+        };
+        return { ohtExamAgnosticUpdated, ohtExamAgnosticProcessing };
+    });
+}
 /**
  * Posts report preview data (measurements and unknownMeasurements) to OHT Core API.
  * Uses the shared makeApiCallWithRetry helper (Basic auth) from oht-custom-parser-lib.
  */
-async function postReportPreviewToCore(reportPreviewId, measurements, unknownMeasurements, filename, unknownUnits, partnerId, isReportParsedCorrectly, notes, ohtCoreApiKey) {
+async function postReportPreviewToCore(reportPreviewId, measurements, unknownMeasurements, filename, unknownUnits, partnerId, isReportParsedCorrectly, notes, ohtCoreApiKey, ohtExamAgnosticUpdated) {
     if (!OHT_CORE_URL) {
         throw new Error(`ERROR: OHT_CORE_URL is required for report preview, filename: ${filename}`);
     }
@@ -38,13 +76,15 @@ async function postReportPreviewToCore(reportPreviewId, measurements, unknownMea
             });
         }
     }
-    // Always send both arrays, with empty arrays if no data
     const requestBody = {
         status: status,
         measurements: measurements || [],
         unknownMeasurements: unknownMeasurements || [],
         notes: notes,
     };
+    if (ohtExamAgnosticUpdated && ohtExamAgnosticUpdated.length > 0) {
+        requestBody.ohtExamAgnosticUpdated = ohtExamAgnosticUpdated;
+    }
     processingLogger_service_1.processingLogger.logInfo(`postReportPreviewToCore: Sending report preview to OHT Core API (${(measurements || []).length} measurements, ${(unknownMeasurements || []).length} unknownMeasurements), filename: ${filename}`, {
         filename,
         report_preview_id: reportPreviewId,

package/dist/service/reportCreator.service.js.map

@@ -1 +1 @@
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package/dist/types/oht.types.d.ts

@@ -209,8 +209,20 @@ export interface UnknownMeasurement {
     ohtExam?: OhtExam;
     originalExam?: OriginalExam;
 }
+export interface OhtExamAgnosticProcessing {
+    transformationRulesApplied: boolean;
+    synonymUnitApplied: boolean;
+    appliedTransformationRuleIds?: string[];
+}
+/** Per-exam payload sent on report-preview update (merge by labKey on oht-core). Mirrors oht-core OHTExamAgnosticUpdated. */
+export interface OhtExamAgnosticUpdated {
+    ohtExamAgnosticUpdated: OhtExam;
+    ohtExamAgnosticProcessing?: OhtExamAgnosticProcessing;
+}
 export interface Exam {
     ohtExam: OhtExam;
+    ohtExamAgnosticUpdated?: OhtExam;
+    ohtExamAgnosticProcessing?: OhtExamAgnosticProcessing;
     originalExam: OriginalExam;
 }
 export type ExamKind = 'panel' | 'organism' | 'antibiogram' | 'quantitative' | 'qualitative';

package/dist/types/oht.types.js.map

@@ -1 +1 @@
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package/dist/util-ts/extractionUtils.d.ts

@@ -11,9 +11,11 @@ declare function parseRange(exam: OhtExam, patientInfo: PatientInfo): RangeExtra
 * Converts backend biomarker id to know if it should be mapped or unmapped
 * @param backendMapping - The backend mapping configuration
 * @param labKey - The lab key identifier
+* @param isReportPreview - When true, trust ohtBmId from GET /mappings/latest (oht-core already
+*   sets -1 for keep_as_unmapped; keepAsUnmapped on needs_review is a UI flag only)
 * @returns The final ohtBmId and annotationConfig
 */
-declare function handleBiomarkerId(backendMapping: BackendBiomarkerMapping, labKey: string): {
+declare function handleBiomarkerId(backendMapping: BackendBiomarkerMapping, labKey: string, isReportPreview?: boolean): {
     ohtBmId: number;
     annotationConfig: {
         enabled: boolean;

package/dist/util-ts/extractionUtils.js

@@ -428,14 +428,17 @@ function getGreaterThanPatternsLocal() {
 * Converts backend biomarker id to know if it should be mapped or unmapped
 * @param backendMapping - The backend mapping configuration
 * @param labKey - The lab key identifier
+* @param isReportPreview - When true, trust ohtBmId from GET /mappings/latest (oht-core already
+*   sets -1 for keep_as_unmapped; keepAsUnmapped on needs_review is a UI flag only)
 * @returns The final ohtBmId and annotationConfig
 */
-function handleBiomarkerId(backendMapping, labKey) {
+function handleBiomarkerId(backendMapping, labKey, isReportPreview = false) {
     // Handle unmapped biomarkers:
     // 1. ohtBmId: -1 means already unmapped in backend
-    // 2. keepAsUnmapped: true means override to unmapped (ohtBmId becomes -1)
+    // 2. keepAsUnmapped: true means override to unmapped (ohtBmId becomes -1), except in report
+    //    preview where GET /mappings/latest keeps real OHTBmID for needs_review/pending
     const isAlreadyUnmapped = backendMapping.ohtBmId === -1;
-    const shouldBeUnmapped = backendMapping.keepAsUnmapped === true;
+    const shouldBeUnmapped = !isReportPreview && backendMapping.keepAsUnmapped === true;
     const finalOhtBmId = shouldBeUnmapped ? -1 : backendMapping.ohtBmId;
     if (isAlreadyUnmapped) {
         processingLogger_service_1.processingLogger.logInfo(`Processing backend unmapped biomarker: ${labKey} (ohtBmId: -1)`);

package/dist/util-ts/extractionUtils.js.map

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package/dist/util-ts/loincMapping.d.ts

@@ -0,0 +1,5 @@
+import type { BackendBiomarkerMapping, LoincMapping } from '../types/oht.types';
+/** Prefer structured loincMapping; fall back to legacy taggedLoincCode. */
+export declare function getEffectiveLoincMapping(mapping: Pick<BackendBiomarkerMapping, 'loincMapping' | 'taggedLoincCode'> | null | undefined): LoincMapping | undefined;
+/** Build ohtBmId → effective loincMapping from fetched partner biomarker mappings. */
+export declare function buildLoincMappingByOhtBmId(mappedBiomarkers: Record<string, BackendBiomarkerMapping> | null | undefined): Map<number, LoincMapping>;