@openhealth/oht-custom-parser-lib 0.5.55 → 0.5.57

package/dist/types/error.types.js.map

@@ -1 +1 @@
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package/dist/util-ts/dataUtils.d.ts

@@ -16,6 +16,7 @@ export declare const extractValue: (obj: any, position?: string) => any;
 export declare const getMappedBiomarkers: (partnerId: string, ohtCoreApiKey: string) => Promise<any>;
 export declare const getMappedBiomarkersLatest: (partnerId: string, ohtCoreApiKey: string) => Promise<any>;
 export declare const updatePartnerCustomParserUnmappedLabKeys: (partnerId: string, unknownMeasurementsBulk: UnknownMeasurementsBulk, ohtCoreApiKey: string) => Promise<void>;
+export declare const bulkUpsertCustomParserErrorProfiles: (partnerId: string, errorProfiles: import("../types/error.types").ErrorProfilePayload[], ohtCoreApiKey: string) => Promise<void>;
 export declare const bulkCreateCustomParserUnknownUnits: (partnerId: string, unknownUnits: UnknownUnits[], ohtCoreApiKey: string) => Promise<void>;
 /**
  * Fetch synonym units from oht-core API endpoint

package/dist/util-ts/dataUtils.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.fetchSynonymUnits = exports.bulkCreateCustomParserUnknownUnits = exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.extractValue = void 0;
+exports.fetchSynonymUnits = exports.bulkCreateCustomParserUnknownUnits = exports.bulkUpsertCustomParserErrorProfiles = exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.extractValue = void 0;
 exports.resolveUnitFromSynonyms = resolveUnitFromSynonyms;
 exports.isBiomarkerValueNumerical = isBiomarkerValueNumerical;
 exports.isBiomarkerExternalNoVisualRange = isBiomarkerExternalNoVisualRange;
@@ -113,6 +113,20 @@ const updatePartnerCustomParserUnmappedLabKeys = async (partnerId, unknownMeasur
     });
 };
 exports.updatePartnerCustomParserUnmappedLabKeys = updatePartnerCustomParserUnmappedLabKeys;
+// function that uses POST request at /v1/customparser/partners/{partnerId}/parsing-issues/bulk
+const bulkUpsertCustomParserErrorProfiles = async (partnerId, errorProfiles, ohtCoreApiKey) => {
+    const response = await (0, apiUtils_1.makeApiCallWithRetry)('post', `${OHT_CORE_URL}/v1/customparser/partners/${partnerId}/parsing-issues/bulk`, {
+        parsingIssues: errorProfiles,
+    }, ohtCoreApiKey);
+    const bulkData = response?.data;
+    processingLogger_service_1.processingLogger.logInfo(`Resp: POST /v1/customparser/partners/${partnerId}/parsing-issues/bulk`, {
+        partner_id: partnerId,
+        profile_count: errorProfiles?.length ?? 0,
+        http_status: response?.status,
+        upserted_count: typeof bulkData?.upsertedCount === 'number' ? bulkData.upsertedCount : undefined,
+    });
+};
+exports.bulkUpsertCustomParserErrorProfiles = bulkUpsertCustomParserErrorProfiles;
 // function that uses POST request at /v1/synonym/partners/{partnerId}/unknown-units/bulk to send the unknownUnits to the server
 const bulkCreateCustomParserUnknownUnits = async (partnerId, unknownUnits, ohtCoreApiKey) => {
     const response = await (0, apiUtils_1.makeApiCallWithRetry)('post', `${OHT_CORE_URL}/v1/synonym/partners/${partnerId}/unknown-units/bulk`, {

package/dist/util-ts/dataUtils.js.map

@@ -1 +1 @@
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package/dist/util-ts/mapperUtils.d.ts

@@ -4,7 +4,8 @@ import type { ActiveMappingRulesApiResponse, OhtReportMetadataPathRules, OhtRepo
 /** One parsed row: keys from the CSV header, values as strings. */
 export type LisCsvRow = Record<string, string>;
 /**
- * LIS CSV (`;`, quoted multiline fields) → rows. Column names come from the header; one row = one logical line.
+ * LIS CSV → rows. Column names come from the header; one row = one logical line.
+ * Delimiter is auto-detected from the header (`;` for LIS exports, `,` for comma CSV).
  */
 export declare function lisCsvToExamRows(csv: string): LisCsvRow[];
 /**

package/dist/util-ts/mapperUtils.js

@@ -16,8 +16,13 @@ const lisCsvParseOptions = {
     skip_empty_lines: true,
     bom: true,
     relax_column_count: true,
-    delimiter: ';',
 };
+function detectCsvDelimiter(csv) {
+    const firstLine = csv.split(/\r?\n/, 1)[0] ?? '';
+    const semicolons = (firstLine.match(/;/g) ?? []).length;
+    const commas = (firstLine.match(/,/g) ?? []).length;
+    return semicolons > commas ? ';' : ',';
+}
 function parseLisCsvRaw(csv) {
     if (typeof csv !== 'string') {
         throw new TypeError('lisCsvToExamRows: expected a string');
@@ -25,10 +30,14 @@ function parseLisCsvRaw(csv) {
     if (csv.trim() === '') {
         return [];
     }
-    return (0, sync_1.parse)(csv, lisCsvParseOptions);
+    return (0, sync_1.parse)(csv, {
+        ...lisCsvParseOptions,
+        delimiter: detectCsvDelimiter(csv),
+    });
 }
 /**
- * LIS CSV (`;`, quoted multiline fields) → rows. Column names come from the header; one row = one logical line.
+ * LIS CSV → rows. Column names come from the header; one row = one logical line.
+ * Delimiter is auto-detected from the header (`;` for LIS exports, `,` for comma CSV).
  */
 function lisCsvToExamRows(csv) {
     return parseLisCsvRaw(csv);

package/dist/util-ts/mapperUtils.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@openhealth/oht-custom-parser-lib",
-  "version": "0.5.55",
+  "version": "0.5.57",
   "description": "Shared nodejs lib with with reusable functions",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

package/dist/util-ts/loincMapping.d.ts

@@ -1,5 +0,0 @@
-import type { BackendBiomarkerMapping, LoincMapping } from '../types/oht.types';
-/** Prefer structured loincMapping; fall back to legacy taggedLoincCode. */
-export declare function getEffectiveLoincMapping(mapping: Pick<BackendBiomarkerMapping, 'loincMapping' | 'taggedLoincCode'> | null | undefined): LoincMapping | undefined;
-/** Build ohtBmId → effective loincMapping from fetched partner biomarker mappings. */
-export declare function buildLoincMappingByOhtBmId(mappedBiomarkers: Record<string, BackendBiomarkerMapping> | null | undefined): Map<number, LoincMapping>;

package/dist/util-ts/loincMapping.js

@@ -1,81 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getEffectiveLoincMapping = getEffectiveLoincMapping;
-exports.buildLoincMappingByOhtBmId = buildLoincMappingByOhtBmId;
-const UUID_RE = /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i;
-function trimField(value) {
-    return (value ?? '').trim();
-}
-function normalizeLoincCodeKey(code) {
-    return trimField(code).replace(/\s+/g, '');
-}
-function extractUuid(value) {
-    const trimmed = trimField(value);
-    if (!trimmed) {
-        return undefined;
-    }
-    const lower = trimmed.toLowerCase();
-    return UUID_RE.test(lower) ? lower : undefined;
-}
-function normalizeLoincMapping(lm) {
-    if (!lm) {
-        return undefined;
-    }
-    const loincCode = normalizeLoincCodeKey(lm.loincCode ?? '');
-    const bmObjectUuid = extractUuid(lm.bmObjectUuid);
-    if (!loincCode && !bmObjectUuid) {
-        return undefined;
-    }
-    const result = {};
-    if (loincCode) {
-        result.loincCode = loincCode;
-    }
-    if (bmObjectUuid) {
-        result.bmObjectUuid = bmObjectUuid;
-    }
-    return result;
-}
-/** Prefer structured loincMapping; fall back to legacy taggedLoincCode. */
-function getEffectiveLoincMapping(mapping) {
-    if (!mapping) {
-        return undefined;
-    }
-    const fromStructured = normalizeLoincMapping(mapping.loincMapping);
-    if (fromStructured) {
-        return fromStructured;
-    }
-    const tagged = trimField(mapping.taggedLoincCode);
-    if (!tagged) {
-        return undefined;
-    }
-    const uuid = extractUuid(tagged);
-    if (uuid && uuid === tagged.toLowerCase()) {
-        return { bmObjectUuid: uuid };
-    }
-    const codeKey = normalizeLoincCodeKey(tagged);
-    if (codeKey) {
-        return { loincCode: codeKey };
-    }
-    return undefined;
-}
-/** Build ohtBmId → effective loincMapping from fetched partner biomarker mappings. */
-function buildLoincMappingByOhtBmId(mappedBiomarkers) {
-    const index = new Map();
-    if (!mappedBiomarkers) {
-        return index;
-    }
-    for (const mapping of Object.values(mappedBiomarkers)) {
-        if (!mapping || mapping.isIgnored || mapping.ohtBmId <= 0) {
-            continue;
-        }
-        const effective = getEffectiveLoincMapping(mapping);
-        if (!effective) {
-            continue;
-        }
-        if (!index.has(mapping.ohtBmId)) {
-            index.set(mapping.ohtBmId, effective);
-        }
-    }
-    return index;
-}
-//# sourceMappingURL=loincMapping.js.map

package/dist/util-ts/loincMapping.js.map

@@ -1 +0,0 @@
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