@opengsd/get-shit-done-redux 1.0.0

package/sdk/dist/query/config-mutation.js

@@ -0,0 +1,602 @@
+/**
+ * Config mutation handlers — write operations for .planning/config.json.
+ *
+ * Ported from get-shit-done/bin/lib/config.cjs.
+ * Provides config-set (with key validation and value coercion),
+ * config-set-model-profile, config-new-project, and config-ensure-section.
+ *
+ * @example
+ * ```typescript
+ * import { configSet, configNewProject } from './config-mutation.js';
+ *
+ * await configSet(['model_profile', 'quality'], '/project');
+ * // { data: { updated: true, key: 'model_profile', value: 'quality', previousValue: 'balanced' } }
+ *
+ * await configNewProject([], '/project');
+ * // { data: { created: true, path: '.planning/config.json' } }
+ * ```
+ */
+import { readFile, writeFile, mkdir, rename, unlink } from 'node:fs/promises';
+import { existsSync } from 'node:fs';
+import { homedir } from 'node:os';
+import { join } from 'node:path';
+import { GSDError, ErrorClassification } from '../errors.js';
+import { VALID_PROFILES, getAgentToModelMapForProfile } from './config-query.js';
+import { VALID_CONFIG_KEYS, RUNTIME_STATE_KEYS, DYNAMIC_KEY_PATTERNS } from './config-schema.js';
+import { CONFIG_DEFAULTS } from '../configuration/index.js';
+import { planningPaths } from './helpers.js';
+import { acquireStateLock, releaseStateLock } from './state-mutation.js';
+import { maskIfSecret } from './secrets.js';
+/**
+ * Write config JSON atomically via temp file + rename to prevent
+ * partial writes on process interruption.
+ */
+async function atomicWriteConfig(configPath, config) {
+    const tmpPath = configPath + '.tmp.' + process.pid;
+    const content = JSON.stringify(config, null, 2) + '\n';
+    try {
+        await writeFile(tmpPath, content, 'utf-8');
+        await rename(tmpPath, configPath);
+    }
+    catch {
+        // D5: Rename-failure fallback — clean up temp, fall back to direct write
+        try {
+            await unlink(tmpPath);
+        }
+        catch { /* already gone */ }
+        await writeFile(configPath, content, 'utf-8');
+    }
+}
+// ─── VALID_CONFIG_KEYS ────────────────────────────────────────────────────
+// Imported from ./config-schema.js — single source of truth, kept in sync
+// with get-shit-done/bin/lib/config-schema.cjs by a CI parity test (#2653).
+// ─── CONFIG_KEY_SUGGESTIONS (D9 — match CJS config.cjs:57-67) ────────────
+/**
+ * Curated typo correction map for known config key mistakes.
+ * Checked before the general LCP fallback for more precise suggestions.
+ */
+const CONFIG_KEY_SUGGESTIONS = {
+    'workflow.nyquist_validation_enabled': 'workflow.nyquist_validation',
+    'agents.nyquist_validation_enabled': 'workflow.nyquist_validation',
+    'nyquist.validation_enabled': 'workflow.nyquist_validation',
+    'hooks.research_questions': 'workflow.research_before_questions',
+    'workflow.research_questions': 'workflow.research_before_questions',
+    'workflow.codereview': 'workflow.code_review',
+    'workflow.review_command': 'workflow.code_review_command',
+    'workflow.review': 'workflow.code_review',
+    'workflow.code_review_level': 'workflow.code_review_depth',
+    'workflow.review_depth': 'workflow.code_review_depth',
+    'review.model': 'review.models.<cli-name>',
+    'sub_repos': 'planning.sub_repos',
+    'plan_checker': 'workflow.plan_check',
+};
+const SHIP_PR_BODY_SECTION_KEYS = new Set(['heading', 'enabled', 'source', 'fallback', 'template']);
+const SHIP_PR_BODY_TEMPLATE_TOKENS = new Set([
+    'phase_number',
+    'phase_name',
+    'phase_dir',
+    'base_branch',
+    'padded_phase',
+]);
+const SHIP_PR_BODY_SOURCE_RE = /^(ROADMAP|PLAN|SUMMARY|VERIFICATION|STATE|REQUIREMENTS|CONTEXT)\.md\s+##\s+[^\r\n#][^\r\n]*$/;
+function validateShipPrBodySections(value) {
+    if (!Array.isArray(value)) {
+        throw new GSDError('Invalid ship.pr_body_sections value. Expected a JSON array of section objects.', ErrorClassification.Validation);
+    }
+    value.forEach((section, index) => {
+        const prefix = `Invalid ship.pr_body_sections[${index}]`;
+        if (!section || typeof section !== 'object' || Array.isArray(section)) {
+            throw new GSDError(`${prefix}. Expected an object.`, ErrorClassification.Validation);
+        }
+        const record = section;
+        const unknownKeys = Object.keys(record).filter((key) => !SHIP_PR_BODY_SECTION_KEYS.has(key));
+        if (unknownKeys.length > 0) {
+            throw new GSDError(`${prefix}. Unknown field(s): ${unknownKeys.join(', ')}.`, ErrorClassification.Validation);
+        }
+        if (typeof record.heading !== 'string' || record.heading.trim() === '') {
+            throw new GSDError(`${prefix}. heading must be a non-empty string.`, ErrorClassification.Validation);
+        }
+        if (/[\r\n]/.test(record.heading)) {
+            throw new GSDError(`${prefix}. heading must be a single line.`, ErrorClassification.Validation);
+        }
+        if ('enabled' in record && typeof record.enabled !== 'boolean') {
+            throw new GSDError(`${prefix}. enabled must be true or false.`, ErrorClassification.Validation);
+        }
+        for (const field of ['source', 'fallback', 'template']) {
+            if (field in record && typeof record[field] !== 'string') {
+                throw new GSDError(`${prefix}. ${field} must be a string.`, ErrorClassification.Validation);
+            }
+        }
+        const hasContent = ['source', 'fallback', 'template'].some((field) => {
+            return typeof record[field] === 'string' && record[field].trim() !== '';
+        });
+        if (!hasContent) {
+            throw new GSDError(`${prefix}. Provide at least one of source, fallback, or template.`, ErrorClassification.Validation);
+        }
+        if (typeof record.source === 'string' && record.source.trim() !== '') {
+            const selectors = record.source.split('||').map((selector) => selector.trim()).filter(Boolean);
+            if (selectors.length === 0 || selectors.some((selector) => !SHIP_PR_BODY_SOURCE_RE.test(selector))) {
+                throw new GSDError(`${prefix}. source must use selectors like "PLAN.md ## Risks", separated with "||".`, ErrorClassification.Validation);
+            }
+        }
+        if (typeof record.template === 'string') {
+            const tokens = record.template.matchAll(/\{([a-zA-Z][a-zA-Z0-9_]*)\}/g);
+            for (const match of tokens) {
+                if (!SHIP_PR_BODY_TEMPLATE_TOKENS.has(match[1])) {
+                    throw new GSDError(`${prefix}. Unsupported template token: {${match[1]}}.`, ErrorClassification.Validation);
+                }
+            }
+        }
+    });
+}
+// ─── isValidConfigKey ─────────────────────────────────────────────────────
+/**
+ * Check whether a config key path is valid.
+ *
+ * Supports exact matches from VALID_CONFIG_KEYS plus dynamic patterns
+ * like `agent_skills.<agent-type>` and `features.<feature_name>`.
+ * Uses curated CONFIG_KEY_SUGGESTIONS before LCP fallback for typo correction.
+ *
+ * @param keyPath - Dot-notation config key path
+ * @returns Object with valid flag and optional suggestion for typos
+ */
+export function isValidConfigKey(keyPath) {
+    if (VALID_CONFIG_KEYS.has(keyPath))
+        return { valid: true };
+    if (RUNTIME_STATE_KEYS.has(keyPath))
+        return { valid: true };
+    // Dynamic patterns — all sourced from shared config-schema (#2653).
+    // Covers agent_skills.*, review.models.*, features.*,
+    // claude_md_assembly.blocks.*, and model_profile_overrides.*.<tier>.
+    if (DYNAMIC_KEY_PATTERNS.some((p) => p.test(keyPath)))
+        return { valid: true };
+    // D9: Check curated suggestions before LCP fallback
+    if (CONFIG_KEY_SUGGESTIONS[keyPath]) {
+        return { valid: false, suggestion: CONFIG_KEY_SUGGESTIONS[keyPath] };
+    }
+    // Find closest suggestion using longest common prefix
+    const keys = [...VALID_CONFIG_KEYS];
+    let bestMatch = '';
+    let bestScore = 0;
+    for (const candidate of keys) {
+        let shared = 0;
+        const maxLen = Math.min(keyPath.length, candidate.length);
+        for (let i = 0; i < maxLen; i++) {
+            if (keyPath[i] === candidate[i])
+                shared++;
+            else
+                break;
+        }
+        if (shared > bestScore) {
+            bestScore = shared;
+            bestMatch = candidate;
+        }
+    }
+    return { valid: false, suggestion: bestScore > 2 ? bestMatch : undefined };
+}
+// ─── parseConfigValue ─────────────────────────────────────────────────────
+/**
+ * Coerce a CLI string value to its native type.
+ *
+ * Ported from config.cjs lines 344-351.
+ *
+ * @param value - String value from CLI
+ * @returns Coerced value: boolean, number, parsed JSON, or original string
+ */
+export function parseConfigValue(value) {
+    if (value === 'true')
+        return true;
+    if (value === 'false')
+        return false;
+    if (value !== '' && !isNaN(Number(value)))
+        return Number(value);
+    if (typeof value === 'string' && (value.startsWith('[') || value.startsWith('{'))) {
+        try {
+            return JSON.parse(value);
+        }
+        catch { /* keep as string */ }
+    }
+    return value;
+}
+// ─── setConfigValue ───────────────────────────────────────────────────────
+/**
+ * Set a value at a dot-notation path in a config object.
+ *
+ * Creates nested objects as needed along the path.
+ *
+ * @param obj - Config object to mutate
+ * @param dotPath - Dot-notation key path (e.g., 'workflow.auto_advance')
+ * @param value - Value to set
+ */
+function getValueAtPath(obj, dotPath) {
+    const keys = dotPath.split('.');
+    let current = obj;
+    for (const key of keys) {
+        if (current === undefined || current === null || typeof current !== 'object') {
+            return undefined;
+        }
+        current = current[key];
+    }
+    return current;
+}
+function setConfigValue(obj, dotPath, value) {
+    const keys = dotPath.split('.');
+    let current = obj;
+    for (let i = 0; i < keys.length - 1; i++) {
+        const key = keys[i];
+        if (current[key] === undefined || typeof current[key] !== 'object' || current[key] === null) {
+            current[key] = {};
+        }
+        current = current[key];
+    }
+    current[keys[keys.length - 1]] = value;
+}
+// ─── configSet ────────────────────────────────────────────────────────────
+/**
+ * Write a validated key-value pair to config.json.
+ *
+ * Validates key against VALID_CONFIG_KEYS allowlist, coerces value
+ * from CLI string to native type, and writes config.json.
+ *
+ * @param args - args[0]=key, args[1]=value
+ * @param projectDir - Project root directory
+ * @returns QueryResult matching gsd-tools `config-set` JSON: `{ updated, key, value, previousValue }`
+ * @throws GSDError with Validation if key is invalid or args missing
+ */
+export const configSet = async (args, projectDir, workstream) => {
+    const keyPath = args[0];
+    const rawValue = args[1];
+    if (!keyPath) {
+        throw new GSDError('Usage: config-set <key.path> <value>', ErrorClassification.Validation);
+    }
+    // #3593: parity with CJS cmdConfigSet — reject `config-set <key>` invocations
+    // that omit the value. Without this guard parsedValue stays undefined and the
+    // write either silently strips the key (JSON.stringify drops undefined) or
+    // persists a corrupt entry.
+    if (rawValue === undefined) {
+        throw new GSDError('Usage: config-set <key.path> <value>', ErrorClassification.Validation);
+    }
+    const validation = isValidConfigKey(keyPath);
+    if (!validation.valid) {
+        const suggestion = validation.suggestion ? `. Did you mean: ${validation.suggestion}?` : '';
+        throw new GSDError(`Unknown config key: ${keyPath}${suggestion}`, ErrorClassification.Validation);
+    }
+    const parsedValue = rawValue !== undefined ? parseConfigValue(rawValue) : rawValue;
+    // D8: Context value validation (match CJS config.cjs:357-359)
+    const VALID_CONTEXT_VALUES = ['dev', 'research', 'review'];
+    if (keyPath === 'context' && !VALID_CONTEXT_VALUES.includes(String(parsedValue))) {
+        throw new GSDError(`Invalid context value '${rawValue}'. Valid values: ${VALID_CONTEXT_VALUES.join(', ')}`, ErrorClassification.Validation);
+    }
+    if (keyPath === 'ship.pr_body_sections') {
+        validateShipPrBodySections(parsedValue);
+    }
+    // CJS parity (config.cjs:430-441): boolean-only keys must reject non-boolean
+    // input.  Without this, `config-set git.create_tag maybe` silently writes
+    // "maybe" to disk under SDK dispatch even though the CJS path correctly
+    // rejects it.  Bug #3086.
+    if (keyPath === 'workflow.post_planning_gaps' && typeof parsedValue !== 'boolean') {
+        throw new GSDError(`Invalid workflow.post_planning_gaps '${rawValue}'. Must be a boolean (true or false).`, ErrorClassification.Validation);
+    }
+    if (keyPath === 'git.create_tag' && typeof parsedValue !== 'boolean') {
+        throw new GSDError(`Invalid git.create_tag '${rawValue}'. Must be a boolean (true or false).`, ErrorClassification.Validation);
+    }
+    // Codebase drift detector value validation — port of config.cjs:430-437. (#2003)
+    const VALID_DRIFT_ACTIONS = ['warn', 'auto-remap'];
+    if (keyPath === 'workflow.drift_action' && !VALID_DRIFT_ACTIONS.includes(String(parsedValue))) {
+        throw new GSDError(`Invalid workflow.drift_action '${rawValue}'. Valid values: ${VALID_DRIFT_ACTIONS.join(', ')}`, ErrorClassification.Validation);
+    }
+    if (keyPath === 'workflow.drift_threshold') {
+        if (typeof parsedValue !== 'number' || !Number.isInteger(parsedValue) || parsedValue < 1) {
+            throw new GSDError(`Invalid workflow.drift_threshold '${rawValue}'. Must be a positive integer.`, ErrorClassification.Validation);
+        }
+    }
+    // Human verification checkpoint mode (#3309) — port of config.cjs:457-460.
+    const VALID_HUMAN_VERIFY_MODES = ['mid-flight', 'end-of-phase'];
+    if (keyPath === 'workflow.human_verify_mode' && !VALID_HUMAN_VERIFY_MODES.includes(String(parsedValue))) {
+        throw new GSDError(`Invalid workflow.human_verify_mode '${rawValue}'. Valid values: ${VALID_HUMAN_VERIFY_MODES.join(', ')}`, ErrorClassification.Validation);
+    }
+    // Context position enum validation (#2937) — port of config.cjs:463-466.
+    const VALID_CONTEXT_POSITIONS = ['front', 'end'];
+    if (keyPath === 'statusline.context_position' && !VALID_CONTEXT_POSITIONS.includes(String(parsedValue))) {
+        throw new GSDError(`Invalid statusline.context_position '${rawValue}'. Valid values: ${VALID_CONTEXT_POSITIONS.join(', ')}`, ErrorClassification.Validation);
+    }
+    // Fallow scope + profile enum validation (#3424) — port of config.cjs:469-477.
+    const VALID_FALLOW_SCOPES = ['phase', 'repo'];
+    if (keyPath === 'code_quality.fallow.scope' && !VALID_FALLOW_SCOPES.includes(String(parsedValue))) {
+        throw new GSDError(`Invalid code_quality.fallow.scope '${rawValue}'. Valid values: ${VALID_FALLOW_SCOPES.join(', ')}`, ErrorClassification.Validation);
+    }
+    const VALID_FALLOW_PROFILES = ['minimal', 'standard', 'strict'];
+    if (keyPath === 'code_quality.fallow.profile' && !VALID_FALLOW_PROFILES.includes(String(parsedValue))) {
+        throw new GSDError(`Invalid code_quality.fallow.profile '${rawValue}'. Valid values: ${VALID_FALLOW_PROFILES.join(', ')}`, ErrorClassification.Validation);
+    }
+    // review.default_reviewers (#3079) — port of normalizeConfiguredDefaultReviewers
+    // from bin/lib/review-reviewer-selection.cjs. Validates array shape, rejects
+    // empties, requires string slugs matching ^[a-zA-Z0-9_-]+$, and normalizes to
+    // lowercase-unique order. `parsedValue` is rewritten in place so the persisted
+    // value carries the normalized form (matching CJS config.cjs:479-483 behavior).
+    let normalizedValue = parsedValue;
+    if (keyPath === 'review.default_reviewers') {
+        if (parsedValue === null || parsedValue === undefined) {
+            throw new GSDError('review.default_reviewers must be a JSON array of reviewer slugs', ErrorClassification.Validation);
+        }
+        if (!Array.isArray(parsedValue)) {
+            throw new GSDError('review.default_reviewers must be a JSON array of reviewer slugs', ErrorClassification.Validation);
+        }
+        if (parsedValue.length === 0) {
+            throw new GSDError('review.default_reviewers cannot be empty', ErrorClassification.Validation);
+        }
+        const seen = new Set();
+        const normalized = [];
+        for (const item of parsedValue) {
+            if (typeof item !== 'string') {
+                throw new GSDError('review.default_reviewers must contain only string slugs', ErrorClassification.Validation);
+            }
+            if (!/^[a-zA-Z0-9_-]+$/.test(item)) {
+                throw new GSDError(`invalid reviewer slug in review.default_reviewers: ${item}`, ErrorClassification.Validation);
+            }
+            const slug = item.toLowerCase();
+            if (!seen.has(slug)) {
+                seen.add(slug);
+                normalized.push(slug);
+            }
+        }
+        normalizedValue = normalized;
+    }
+    // D6: Lock protection for read-modify-write (match CJS config.cjs:296)
+    const paths = planningPaths(projectDir, workstream);
+    const lockPath = await acquireStateLock(paths.config);
+    let previousValue;
+    try {
+        let config = {};
+        try {
+            const raw = await readFile(paths.config, 'utf-8');
+            config = JSON.parse(raw);
+        }
+        catch {
+            // Start with empty config if file doesn't exist or is malformed
+        }
+        previousValue = getValueAtPath(config, keyPath);
+        setConfigValue(config, keyPath, normalizedValue);
+        await atomicWriteConfig(paths.config, config);
+    }
+    finally {
+        await releaseStateLock(lockPath);
+    }
+    // Mask plaintext for keys in SECRET_CONFIG_KEYS to match CJS behavior at
+    // config.cjs:362-370 — without this, `gsd-sdk query config-set brave_search XXX`
+    // would echo the plaintext credential into machine-readable output. (#2997)
+    // The on-disk value is intentionally NOT masked — only the response.
+    const data = {
+        updated: true,
+        key: keyPath,
+        value: maskIfSecret(keyPath, parsedValue),
+    };
+    if (previousValue !== undefined) {
+        data.previousValue = maskIfSecret(keyPath, previousValue);
+    }
+    return { data };
+};
+// ─── configSetModelProfile ────────────────────────────────────────────────
+/**
+ * Validate and set the model profile in config.json.
+ *
+ * @param args - args[0]=profileName
+ * @param projectDir - Project root directory
+ * @returns QueryResult with { set: true, profile, agents }
+ * @throws GSDError with Validation if profile is invalid
+ */
+export const configSetModelProfile = async (args, projectDir, workstream) => {
+    const profileName = args[0];
+    if (!profileName) {
+        throw new GSDError(`Usage: config-set-model-profile <${VALID_PROFILES.join('|')}>`, ErrorClassification.Validation);
+    }
+    const normalized = profileName.toLowerCase().trim();
+    if (!VALID_PROFILES.includes(normalized)) {
+        throw new GSDError(`Invalid profile '${profileName}'. Valid profiles: ${VALID_PROFILES.join(', ')}`, ErrorClassification.Validation);
+    }
+    // D6: Lock protection for read-modify-write
+    const paths = planningPaths(projectDir, workstream);
+    const lockPath = await acquireStateLock(paths.config);
+    let previousProfile = 'balanced';
+    try {
+        let config = {};
+        try {
+            const raw = await readFile(paths.config, 'utf-8');
+            config = JSON.parse(raw);
+        }
+        catch {
+            // Start with empty config
+        }
+        const prev = typeof config.model_profile === 'string' ? config.model_profile.toLowerCase().trim() : '';
+        previousProfile = VALID_PROFILES.includes(prev) ? prev : 'balanced';
+        config.model_profile = normalized;
+        await atomicWriteConfig(paths.config, config);
+    }
+    finally {
+        await releaseStateLock(lockPath);
+    }
+    const agentToModelMap = getAgentToModelMapForProfile(normalized);
+    return {
+        data: {
+            updated: true,
+            profile: normalized,
+            previousProfile,
+            agentToModelMap,
+        },
+    };
+};
+// ─── configNewProject ─────────────────────────────────────────────────────
+/**
+ * Create config.json with defaults and optional user choices.
+ *
+ * Idempotent: if config.json already exists, returns { created: false }.
+ * Detects API key availability from environment variables.
+ *
+ * @param args - args[0]=optional JSON string of user choices
+ * @param projectDir - Project root directory
+ * @returns QueryResult with { created: true, path } or { created: false, reason }
+ */
+export const configNewProject = async (args, projectDir, workstream) => {
+    const paths = planningPaths(projectDir, workstream);
+    // Idempotent: don't overwrite existing config
+    if (existsSync(paths.config)) {
+        return { data: { created: false, reason: 'already_exists' } };
+    }
+    // Parse user choices
+    let userChoices = {};
+    if (args[0] && args[0].trim() !== '') {
+        try {
+            userChoices = JSON.parse(args[0]);
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            throw new GSDError(`Invalid JSON for config-new-project: ${msg}`, ErrorClassification.Validation);
+        }
+    }
+    // Ensure .planning directory exists
+    const planningDir = paths.planning;
+    if (!existsSync(planningDir)) {
+        await mkdir(planningDir, { recursive: true });
+    }
+    // D11: Load global defaults from ~/.gsd/defaults.json if present
+    const homeDir = homedir();
+    let globalDefaults = {};
+    try {
+        const defaultsPath = join(homeDir, '.gsd', 'defaults.json');
+        const defaultsRaw = await readFile(defaultsPath, 'utf-8');
+        globalDefaults = JSON.parse(defaultsRaw);
+    }
+    catch {
+        // No global defaults — continue with hardcoded defaults only
+    }
+    // Detect API key availability (boolean only, never store keys)
+    const hasBraveSearch = !!(process.env.BRAVE_API_KEY || existsSync(join(homeDir, '.gsd', 'brave_api_key')));
+    const hasFirecrawl = !!(process.env.FIRECRAWL_API_KEY || existsSync(join(homeDir, '.gsd', 'firecrawl_api_key')));
+    const hasExaSearch = !!(process.env.EXA_API_KEY || existsSync(join(homeDir, '.gsd', 'exa_api_key')));
+    // Build default config. Source is the canonical Configuration Module manifest
+    // at sdk/shared/config-defaults.manifest.json (CONFIG_DEFAULTS from
+    // sdk/src/configuration/index.ts) — but ONLY a subset is materialized at
+    // init time. Legacy CJS `buildNewProjectConfig` (bin/lib/config.cjs:155-210)
+    // intentionally omits keys whose value is meaningful only when set
+    // explicitly so config-get returns "Key not found" and workflows fall back
+    // to auto-detect (e.g. git.base_branch falls back to origin/HEAD
+    // resolution). Keeping the SDK init shape aligned with CJS preserves that
+    // workflow contract while the manifest remains the schema-wide source of
+    // truth for validation and key existence (per ADR §6).
+    //
+    // Runtime API-key detection overrides the manifest's `false` defaults for
+    // the three search providers — manifest comment explicitly notes this.
+    const manifestDefaults = CONFIG_DEFAULTS;
+    // Strip the metadata-only "_comment" key before it gets persisted.
+    const { _comment: _ignoredComment, ...sanitizedManifest } = manifestDefaults;
+    void _ignoredComment;
+    // Top-level keys present in the manifest but NOT in CJS init output. Each
+    // either has its own resolution path (resolve_model_ids, context_window,
+    // mode) or lives under a non-init heading (planning.*, graphify.* are
+    // opt-in features users configure separately).
+    const TOP_LEVEL_OMITTED_FROM_INIT = new Set([
+        'resolve_model_ids', 'context_window', 'mode', 'planning', 'graphify',
+    ]);
+    // Nested git keys omitted by CJS init. `git.base_branch` triggers
+    // origin/HEAD auto-detect when absent — materializing `null` here would
+    // suppress that and break ship-ready preflight (#3079).
+    const GIT_KEYS_OMITTED_FROM_INIT = new Set(['base_branch']);
+    const filteredTopLevel = {};
+    for (const [k, v] of Object.entries(sanitizedManifest)) {
+        if (TOP_LEVEL_OMITTED_FROM_INIT.has(k))
+            continue;
+        filteredTopLevel[k] = v;
+    }
+    const manifestGit = filteredTopLevel.git || {};
+    const filteredGit = {};
+    for (const [k, v] of Object.entries(manifestGit)) {
+        if (GIT_KEYS_OMITTED_FROM_INIT.has(k))
+            continue;
+        filteredGit[k] = v;
+    }
+    const defaults = {
+        ...filteredTopLevel,
+        git: filteredGit,
+        brave_search: hasBraveSearch,
+        firecrawl: hasFirecrawl,
+        exa_search: hasExaSearch,
+        // CJS `buildNewProjectConfig` includes `features: {}` as a hardcoded
+        // top-level slot; the manifest doesn't yet — keep parity until the
+        // manifest is amended in a separate enhancement.
+        features: {},
+    };
+    // Deep merge: hardcoded <- globalDefaults <- userChoices (D11)
+    const config = {
+        ...defaults,
+        ...globalDefaults,
+        ...userChoices,
+        git: {
+            ...defaults.git,
+            ...(globalDefaults.git || {}),
+            ...(userChoices.git || {}),
+        },
+        workflow: {
+            ...defaults.workflow,
+            ...(globalDefaults.workflow || {}),
+            ...(userChoices.workflow || {}),
+        },
+        ship: {
+            ...defaults.ship,
+            ...(globalDefaults.ship || {}),
+            ...(userChoices.ship || {}),
+        },
+        hooks: {
+            ...defaults.hooks,
+            ...(globalDefaults.hooks || {}),
+            ...(userChoices.hooks || {}),
+        },
+        agent_skills: {
+            ...(defaults.agent_skills || {}),
+            ...(globalDefaults.agent_skills || {}),
+            ...(userChoices.agent_skills || {}),
+        },
+        features: {
+            ...(defaults.features || {}),
+            ...(globalDefaults.features || {}),
+            ...(userChoices.features || {}),
+        },
+    };
+    const ship = config.ship;
+    validateShipPrBodySections(ship.pr_body_sections);
+    await atomicWriteConfig(paths.config, config);
+    // Match CJS `ensureConfigFile` shape: report the relative project-rooted
+    // path so output stays workspace-portable.
+    return { data: { created: true, path: '.planning/config.json' } };
+};
+// ─── configEnsureSection ──────────────────────────────────────────────────
+/**
+ * Idempotently ensure a top-level section exists in config.json.
+ *
+ * If the section key doesn't exist, creates it as an empty object.
+ * If it already exists, preserves its contents.
+ *
+ * @param args - args[0]=sectionName
+ * @param projectDir - Project root directory
+ * @returns QueryResult with { ensured: true, section }
+ */
+export const configEnsureSection = async (args, projectDir, workstream) => {
+    const sectionName = args[0];
+    if (!sectionName) {
+        throw new GSDError('Usage: config-ensure-section <section>', ErrorClassification.Validation);
+    }
+    const paths = planningPaths(projectDir, workstream);
+    let config = {};
+    try {
+        const raw = await readFile(paths.config, 'utf-8');
+        config = JSON.parse(raw);
+    }
+    catch {
+        // Start with empty config
+    }
+    if (!(sectionName in config)) {
+        config[sectionName] = {};
+    }
+    await atomicWriteConfig(paths.config, config);
+    return { data: { ensured: true, section: sectionName } };
+};
+//# sourceMappingURL=config-mutation.js.map

package/sdk/dist/query/config-mutation.js.map

@@ -0,0 +1 @@
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