@opengsd/get-shit-done-redux 1.0.0

package/get-shit-done/bin/lib/roadmap.cjs

@@ -0,0 +1,642 @@
+/**
+ * Roadmap — Roadmap parsing and update operations
+ */
+
+const fs = require('fs');
+const path = require('path');
+const { escapeRegex, normalizePhaseName, phaseMarkdownRegexSource, phaseMarkdownRegexSourceExact, output, error, findPhaseInternal, stripShippedMilestones, extractCurrentMilestone, replaceInCurrentMilestone, phaseTokenMatches } = require('./core.cjs');
+const { platformWriteSync } = require('./shell-command-projection.cjs');
+const { planningPaths, withPlanningLock, findContextMdIn } = require('./planning-workspace.cjs');
+const scanPhasePlans = require('./plan-scan.cjs');
+
+/**
+ * Coerce an arbitrary YAML scalar/object into a string for cross-cutting
+ * truth aggregation. Handles:
+ *   - strings (passthrough)
+ *   - numbers / booleans (String() coercion — issue #2770: bare YAML ints
+ *     like `- 3` must be surfaced, not silently skipped)
+ *   - kv-shaped objects from parseMustHavesBlock continuation kv (issue
+ *     #2757) — extract the first meaningful string field
+ *
+ * Returns the empty string when no usable text can be derived; callers should
+ * skip empty results.
+ */
+function coerceTruthToString(t) {
+  if (t === null || t === undefined) return '';
+  if (typeof t === 'string') return t;
+  if (typeof t === 'number' || typeof t === 'boolean' || typeof t === 'bigint') {
+    return String(t);
+  }
+  if (typeof t === 'object') {
+    // Prefer common title-bearing keys produced by parseMustHavesBlock
+    for (const k of ['title', 'text', 'name', 'rule', 'path', 'provides']) {
+      const v = t[k];
+      if (typeof v === 'string' && v.trim()) return v;
+      if (typeof v === 'number' || typeof v === 'boolean') return String(v);
+    }
+  }
+  return '';
+}
+
+function countPhasePlansAndSummaries(phaseDir) {
+  const { planCount, summaryCount } = scanPhasePlans(phaseDir);
+  // hasContext and hasResearch are not plan-scan concerns — read the directory
+  // once and share the listing for all non-plan metadata that cmdRoadmapAnalyze needs.
+  let phaseFiles = [];
+  try { phaseFiles = fs.readdirSync(phaseDir); } catch { /* empty */ }
+  return {
+    planCount,
+    summaryCount,
+    hasContext: findContextMdIn(phaseFiles) !== null,
+    hasResearch: phaseFiles.some(f => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md'),
+  };
+}
+
+// `phaseMarkdownRegexSource` moved to core.cjs (#3537) so phase.cjs and
+// core.cjs itself can consume it without circular deps. Imported above.
+
+/**
+ * Search for a phase header (and its section) within the given content string.
+ * Returns a result object if found (either a full match or a malformed_roadmap
+ * checklist-only match), or null if the phase is not present at all.
+ */
+function searchPhaseInContent(content, escapedPhase, phaseNum) {
+  // Match "## Phase X:", "### Phase X:", or "#### Phase X:" with optional name
+  const phasePattern = new RegExp(
+    `#{2,4}\\s*Phase\\s+${escapedPhase}:\\s*([^\\n]+)`,
+    'i'
+  );
+  const headerMatch = content.match(phasePattern);
+
+  if (!headerMatch) {
+    // Fallback: check if phase exists in summary list but missing detail section
+    const checklistPattern = new RegExp(
+      `-\\s*\\[[ x]\\]\\s*\\*\\*Phase\\s+${escapedPhase}:\\s*([^*]+)\\*\\*`,
+      'i'
+    );
+    const checklistMatch = content.match(checklistPattern);
+
+    if (checklistMatch) {
+      return {
+        found: false,
+        phase_number: phaseNum,
+        phase_name: checklistMatch[1].trim(),
+        error: 'malformed_roadmap',
+        message: `Phase ${phaseNum} exists in summary list but missing "### Phase ${phaseNum}:" detail section. ROADMAP.md needs both formats.`
+      };
+    }
+
+    return null;
+  }
+
+  const phaseName = headerMatch[1].trim();
+  const headerIndex = headerMatch.index;
+
+  // Find the end of this section (next ## or ### phase header, or end of file)
+  const restOfContent = content.slice(headerIndex);
+  const nextHeaderMatch = restOfContent.match(/\n#{2,4}\s+Phase\s+[\w][\w.-]*/i);
+  const sectionEnd = nextHeaderMatch
+    ? headerIndex + nextHeaderMatch.index
+    : content.length;
+
+  const section = content.slice(headerIndex, sectionEnd).trim();
+
+  // Extract goal if present (supports both **Goal:** and **Goal**: formats)
+  const goalMatch = section.match(/\*\*Goal(?::\*\*|\*\*:)\s*([^\n]+)/i);
+  const goal = goalMatch ? goalMatch[1].trim() : null;
+
+  // Mode: vertical-MVP slice mode flag. Lowercased + trimmed for canonical
+  // comparison; unrecognized values are preserved verbatim for forward-compat.
+  const modeMatch = section.match(/\*\*Mode(?::\*\*|\*\*:)\s*([^\n]+)/i);
+  const mode = modeMatch ? modeMatch[1].trim().toLowerCase() : null;
+
+  // Extract success criteria as structured array
+  const criteriaMatch = section.match(/\*\*Success Criteria\*\*[^\n]*:\s*\n((?:\s*\d+\.\s*[^\n]+\n?)+)/i);
+  const success_criteria = criteriaMatch
+    ? criteriaMatch[1].trim().split('\n').map(line => line.replace(/^\s*\d+\.\s*/, '').trim()).filter(Boolean)
+    : [];
+
+  return {
+    found: true,
+    phase_number: phaseNum,
+    phase_name: phaseName,
+    goal,
+    mode,
+    success_criteria,
+    section,
+  };
+}
+
+function cmdRoadmapGetPhase(cwd, phaseNum, raw) {
+  const roadmapPath = planningPaths(cwd).roadmap;
+
+  if (!fs.existsSync(roadmapPath)) {
+    output({ found: false, error: 'ROADMAP.md not found' }, raw, '');
+    return;
+  }
+
+  try {
+    const rawContent = fs.readFileSync(roadmapPath, 'utf-8');
+    const milestoneContent = extractCurrentMilestone(rawContent, cwd);
+
+    // #3599 two-pass: when the caller passes a project-code-prefixed ID like
+    // `PROJ-42`, try the exact-prefixed heading first (`### Phase PROJ-42:`).
+    // If no match, fall back to the #3537 padding-tolerant numeric form so
+    // a `CK-01` query still resolves to `### Phase 1:`. Doing this at the
+    // call site (instead of inside phaseMarkdownRegexSource) avoids the
+    // alternation-order ambiguity where a bare `### Phase 42:` heading in
+    // the same document would intercept the match for a `PROJ-42` query.
+    const fullContent = stripShippedMilestones(rawContent);
+
+    const exactSource = phaseMarkdownRegexSourceExact(phaseNum);
+    if (exactSource) {
+      const exactMilestone = searchPhaseInContent(milestoneContent, exactSource, phaseNum);
+      if (exactMilestone && !exactMilestone.error) {
+        output(exactMilestone, raw, exactMilestone.section);
+        return;
+      }
+      const exactFull = searchPhaseInContent(fullContent, exactSource, phaseNum);
+      if (exactFull && !exactFull.error) {
+        output(exactFull, raw, exactFull.section);
+        return;
+      }
+    }
+
+    // #3537: padding-tolerant fragment so callers passing `02.7` still match
+    // un-padded ROADMAP prose (`### Phase 2.7:`).
+    const escapedPhase = phaseMarkdownRegexSource(phaseNum);
+
+    // Search the current milestone slice first, then fall back to full roadmap.
+    // A malformed_roadmap result (checklist-only) from the milestone should not
+    // block finding a full header match in the wider roadmap content.
+    const milestoneResult = searchPhaseInContent(milestoneContent, escapedPhase, phaseNum);
+    const result = (milestoneResult && !milestoneResult.error)
+      ? milestoneResult
+      : searchPhaseInContent(fullContent, escapedPhase, phaseNum) || milestoneResult;
+
+    if (!result) {
+      output({ found: false, phase_number: phaseNum }, raw, '');
+      return;
+    }
+
+    if (result.error) {
+      output(result, raw, '');
+      return;
+    }
+
+    output(result, raw, result.section);
+  } catch (e) {
+    error('Failed to read ROADMAP.md: ' + e.message);
+  }
+}
+
+function cmdRoadmapAnalyze(cwd, raw) {
+  const roadmapPath = planningPaths(cwd).roadmap;
+
+  if (!fs.existsSync(roadmapPath)) {
+    output({ error: 'ROADMAP.md not found', milestones: [], phases: [], current_phase: null }, raw);
+    return;
+  }
+
+  const rawContent = fs.readFileSync(roadmapPath, 'utf-8');
+  const content = extractCurrentMilestone(rawContent, cwd);
+  const phasesDir = planningPaths(cwd).phases;
+
+  // Extract all phase headings: ## Phase N: Name or ### Phase N: Name
+  const phasePattern = /#{2,4}\s*Phase\s+(\d+[A-Z]?(?:\.\d+)*)\s*:\s*([^\n]+)/gi;
+  const phases = [];
+  let match;
+
+  // Build phase directory lookup once (O(1) readdir instead of O(N) per phase)
+  const _phaseDirNames = (() => {
+    try {
+      return fs.readdirSync(phasesDir, { withFileTypes: true })
+        .filter(e => e.isDirectory())
+        .map(e => e.name);
+    } catch { return []; }
+  })();
+
+  while ((match = phasePattern.exec(content)) !== null) {
+    const phaseNum = match[1];
+    const phaseName = match[2].replace(/\(INSERTED\)/i, '').trim();
+
+    // Extract goal from the section
+    const sectionStart = match.index;
+    const restOfContent = content.slice(sectionStart);
+    // #3691: `\d` → `\d[\d.]*` so decimal phase headings (e.g. `### Phase 02.3:`) are
+    // recognised as section boundaries.
+    const nextHeader = restOfContent.match(/\n#{2,4}\s+Phase\s+\d[\d.]*/i);
+    const sectionEnd = nextHeader ? sectionStart + nextHeader.index : content.length;
+    const section = content.slice(sectionStart, sectionEnd);
+
+    const goalMatch = section.match(/\*\*Goal(?::\*\*|\*\*:)\s*([^\n]+)/i);
+    const goal = goalMatch ? goalMatch[1].trim() : null;
+
+    const modeMatch = section.match(/\*\*Mode(?::\*\*|\*\*:)\s*([^\n]+)/i);
+    const mode = modeMatch ? modeMatch[1].trim().toLowerCase() : null;
+
+    const dependsMatch = section.match(/\*\*Depends on(?::\*\*|\*\*:)\s*([^\n]+)/i);
+    const depends_on = dependsMatch ? dependsMatch[1].trim() : null;
+
+    // Check completion on disk
+    const normalized = normalizePhaseName(phaseNum);
+    let diskStatus = 'no_directory';
+    let planCount = 0;
+    let summaryCount = 0;
+    let hasContext = false;
+    let hasResearch = false;
+
+    try {
+      const dirMatch = _phaseDirNames.find(d => phaseTokenMatches(d, normalized));
+
+      if (dirMatch) {
+        const counts = countPhasePlansAndSummaries(path.join(phasesDir, dirMatch));
+        planCount = counts.planCount;
+        summaryCount = counts.summaryCount;
+        hasContext = counts.hasContext;
+        hasResearch = counts.hasResearch;
+
+        if (summaryCount >= planCount && planCount > 0) diskStatus = 'complete';
+        else if (summaryCount > 0) diskStatus = 'partial';
+        else if (planCount > 0) diskStatus = 'planned';
+        else if (hasResearch) diskStatus = 'researched';
+        else if (hasContext) diskStatus = 'discussed';
+        else diskStatus = 'empty';
+      }
+    } catch { /* intentionally empty */ }
+
+    // Check ROADMAP checkbox status.
+    // #3537: padding-tolerant fragment — the heading discovered above may use
+    // a different padding than the summary-bullet checkbox below it (mixed
+    // padding inside one ROADMAP is legal and seen in real projects).
+    const checkboxPattern = new RegExp(`-\\s*\\[(x| )\\]\\s*.*Phase\\s+${phaseMarkdownRegexSource(phaseNum)}[:\\s]`, 'i');
+    const checkboxMatch = content.match(checkboxPattern);
+    const roadmapComplete = checkboxMatch ? checkboxMatch[1] === 'x' : false;
+
+    // If roadmap marks phase complete, trust that over disk file structure.
+    // Phases completed before GSD tracking (or via external tools) may lack
+    // the standard PLAN/SUMMARY pairs but are still done.
+    if (roadmapComplete && diskStatus !== 'complete') {
+      diskStatus = 'complete';
+    }
+
+    phases.push({
+      number: phaseNum,
+      name: phaseName,
+      goal,
+      mode,
+      depends_on,
+      plan_count: planCount,
+      summary_count: summaryCount,
+      has_context: hasContext,
+      has_research: hasResearch,
+      disk_status: diskStatus,
+      roadmap_complete: roadmapComplete,
+    });
+  }
+
+  // Extract milestone info
+  const milestones = [];
+  const milestonePattern = /##\s*(.*v(\d+(?:\.\d+)+)[^(\n]*)/gi;
+  let mMatch;
+  while ((mMatch = milestonePattern.exec(content)) !== null) {
+    milestones.push({
+      heading: mMatch[1].trim(),
+      version: 'v' + mMatch[2],
+    });
+  }
+
+  // Find current and next phase
+  const currentPhase = phases.find(p => p.disk_status === 'planned' || p.disk_status === 'partial') || null;
+  const nextPhase = phases.find(p => p.disk_status === 'empty' || p.disk_status === 'no_directory' || p.disk_status === 'discussed' || p.disk_status === 'researched') || null;
+
+  // Aggregated stats
+  const totalPlans = phases.reduce((sum, p) => sum + p.plan_count, 0);
+  const totalSummaries = phases.reduce((sum, p) => sum + p.summary_count, 0);
+  const completedPhases = phases.filter(p => p.disk_status === 'complete').length;
+
+  // Detect phases in summary list without detail sections (malformed ROADMAP)
+  const checklistPattern = /-\s*\[[ x]\]\s*\*\*Phase\s+(\d+[A-Z]?(?:\.\d+)*)/gi;
+  const checklistPhases = new Set();
+  let checklistMatch;
+  while ((checklistMatch = checklistPattern.exec(content)) !== null) {
+    checklistPhases.add(checklistMatch[1]);
+  }
+  const detailPhases = new Set(phases.map(p => p.number));
+  const missingDetails = [...checklistPhases].filter(p => !detailPhases.has(p));
+
+  const result = {
+    milestones,
+    phases,
+    phase_count: phases.length,
+    completed_phases: completedPhases,
+    total_plans: totalPlans,
+    total_summaries: totalSummaries,
+    progress_percent: totalPlans > 0 ? Math.min(100, Math.round((totalSummaries / totalPlans) * 100)) : 0,
+    current_phase: currentPhase ? currentPhase.number : null,
+    next_phase: nextPhase ? nextPhase.number : null,
+    missing_phase_details: missingDetails.length > 0 ? missingDetails : null,
+  };
+
+  output(result, raw);
+}
+
+function cmdRoadmapUpdatePlanProgress(cwd, phaseNum, raw) {
+  if (!phaseNum) {
+    error('phase number required for roadmap update-plan-progress');
+  }
+
+  const roadmapPath = planningPaths(cwd).roadmap;
+
+  const phaseInfo = findPhaseInternal(cwd, phaseNum);
+  if (!phaseInfo) {
+    error(`Phase ${phaseNum} not found`);
+  }
+
+  const planCount = phaseInfo.plans.length;
+  const summaryCount = phaseInfo.summaries.length;
+
+  if (planCount === 0) {
+    output({ updated: false, reason: 'No plans found', plan_count: 0, summary_count: 0 }, raw, 'no plans');
+    return;
+  }
+
+  const isComplete = summaryCount >= planCount;
+  const status = isComplete ? 'Complete' : summaryCount > 0 ? 'In Progress' : 'Planned';
+  const today = new Date().toISOString().split('T')[0];
+
+  if (!fs.existsSync(roadmapPath)) {
+    output({ updated: false, reason: 'ROADMAP.md not found', plan_count: planCount, summary_count: summaryCount }, raw, 'no roadmap');
+    return;
+  }
+
+  // Wrap entire read-modify-write in lock to prevent concurrent corruption
+  withPlanningLock(cwd, () => {
+    let roadmapContent = fs.readFileSync(roadmapPath, 'utf-8');
+    const phasePattern = phaseMarkdownRegexSource(phaseNum);
+
+    // Progress table row: update Plans/Status/Date columns (handles 4 or 5 column tables)
+    const tableRowPattern = new RegExp(
+      `^(\\|\\s*${phasePattern}\\.?\\s[^|]*(?:\\|[^\\n]*))$`,
+      'im'
+    );
+    const dateField = isComplete ? ` ${today} ` : '  ';
+    roadmapContent = roadmapContent.replace(tableRowPattern, (fullRow) => {
+      const cells = fullRow.split('|').slice(1, -1); // drop leading/trailing empty from split
+      if (cells.length === 5) {
+        // 5-col: Phase | Milestone | Plans | Status | Completed
+        cells[2] = ` ${summaryCount}/${planCount} `;
+        cells[3] = ` ${status.padEnd(11)}`;
+        cells[4] = dateField;
+      } else if (cells.length === 4) {
+        // 4-col: Phase | Plans | Status | Completed
+        cells[1] = ` ${summaryCount}/${planCount} `;
+        cells[2] = ` ${status.padEnd(11)}`;
+        cells[3] = dateField;
+      }
+      return '|' + cells.join('|') + '|';
+    });
+
+    // Update plan count in phase detail section
+    const planCountPattern = new RegExp(
+      `(#{2,4}\\s*Phase\\s+${phasePattern}(?=[:\\s])[\\s\\S]*?\\*\\*Plans:\\*\\*\\s*)[^\\n]+`,
+      'i'
+    );
+    const planCountText = isComplete
+      ? `${summaryCount}/${planCount} plans complete`
+      : `${summaryCount}/${planCount} plans executed`;
+    roadmapContent = replaceInCurrentMilestone(roadmapContent, planCountPattern, `$1${planCountText}`);
+
+    // If complete: check checkbox
+    if (isComplete) {
+      const checkboxPattern = new RegExp(
+        `(-\\s*\\[)[ ](\\]\\s*.*Phase\\s+${phasePattern}[:\\s][^\\n]*)`,
+        'i'
+      );
+      roadmapContent = replaceInCurrentMilestone(roadmapContent, checkboxPattern, `$1x$2 (completed ${today})`);
+    }
+
+    // Mark completed plan checkboxes (e.g. "- [ ] 50-01-PLAN.md", "- [ ] 50-01:", or "- [ ] **50-01**")
+    for (const summaryFile of phaseInfo.summaries) {
+      const planId = summaryFile.replace('-SUMMARY.md', '').replace('SUMMARY.md', '');
+      if (!planId) continue;
+      const planEscaped = escapeRegex(planId);
+      const planCheckboxPattern = new RegExp(
+        `(-\\s*\\[) (\\]\\s*(?:\\*\\*)?${planEscaped}(?:\\*\\*)?)`,
+        'i'
+      );
+      roadmapContent = roadmapContent.replace(planCheckboxPattern, '$1x$2');
+    }
+
+    platformWriteSync(roadmapPath, roadmapContent);
+  });
+  output({
+    updated: true,
+    phase: phaseNum,
+    plan_count: planCount,
+    summary_count: summaryCount,
+    status,
+    complete: isComplete,
+  }, raw, `${summaryCount}/${planCount} ${status}`);
+}
+
+/**
+ * Annotate the ROADMAP.md plan list for a phase with wave dependency notes
+ * and a cross-cutting constraints subsection derived from PLAN frontmatter.
+ *
+ * Wave dependency notes: "Wave 2 — blocked on Wave 1 completion" inserted as
+ * bold headers before each wave group in the plan checklist.
+ *
+ * Cross-cutting constraints: must_haves.truths strings that appear in 2+ plans
+ * are surfaced in a "Cross-cutting constraints" subsection below the plan list.
+ *
+ * The operation is idempotent: if wave headers already exist in the section
+ * the function returns without modifying the file.
+ */
+function cmdRoadmapAnnotateDependencies(cwd, phaseNum, raw) {
+  if (!phaseNum) {
+    error('phase number required for roadmap annotate-dependencies');
+  }
+
+  const roadmapPath = planningPaths(cwd).roadmap;
+  if (!fs.existsSync(roadmapPath)) {
+    output({ updated: false, reason: 'ROADMAP.md not found' }, raw, 'no roadmap');
+    return;
+  }
+
+  const phaseInfo = findPhaseInternal(cwd, phaseNum);
+  if (!phaseInfo || phaseInfo.plans.length === 0) {
+    output({ updated: false, reason: 'no plans found for phase', phase: phaseNum }, raw, 'no plans');
+    return;
+  }
+
+  const { extractFrontmatter, parseMustHavesBlock } = require('./frontmatter.cjs');
+
+  // Read each PLAN.md and extract wave + must_haves.truths
+  const planData = [];
+  for (const planFile of phaseInfo.plans) {
+    const planPath = path.join(path.resolve(cwd, phaseInfo.directory), planFile);
+    try {
+      const content = fs.readFileSync(planPath, 'utf-8');
+      const fm = extractFrontmatter(content);
+      const wave = parseInt(fm.wave, 10) || 1;
+      const planId = planFile.replace(/-PLAN\.md$/i, '').replace(/PLAN\.md$/i, '');
+      const truths = parseMustHavesBlock(content, 'truths') || [];
+      planData.push({ planFile, planId, wave, truths });
+    } catch { /* skip unreadable plans */ }
+  }
+
+  if (planData.length === 0) {
+    output({ updated: false, reason: 'could not read plan frontmatter' }, raw, 'no frontmatter');
+    return;
+  }
+
+  // Group plans by wave (sorted)
+  const waveGroups = new Map();
+  for (const p of planData) {
+    if (!waveGroups.has(p.wave)) waveGroups.set(p.wave, []);
+    waveGroups.get(p.wave).push(p);
+  }
+  const waves = [...waveGroups.keys()].sort((a, b) => a - b);
+
+  // Find cross-cutting truths: appear in 2+ plans (de-duplicated, case-insensitive).
+  //
+  // Issue #2770: must **coerce, not skip**. A previous guard
+  // `if (typeof t !== 'string') continue` silently dropped numeric scalars
+  // (YAML ints like `- 3`) and kv-shaped truths (`- title: X`), so the
+  // cross-cutting analysis lost real constraints rather than crashing on
+  // `t.trim()`. We coerce primitives via `String(t)` and extract a sensible
+  // string field from object-shaped items produced by parseMustHavesBlock's
+  // continuation-kv path (issue #2757 produces those shapes for nested keys).
+  const truthCounts = new Map();
+  for (const { truths } of planData) {
+    const seen = new Set();
+    for (const t of truths) {
+      const text = coerceTruthToString(t);
+      if (!text) continue;
+      const trimmed = text.trim();
+      const key = trimmed.toLowerCase();
+      if (!key || seen.has(key)) continue;
+      seen.add(key);
+      if (!truthCounts.has(key)) truthCounts.set(key, { count: 0, text: trimmed });
+      truthCounts.get(key).count++;
+    }
+  }
+  const crossCuttingTruths = [...truthCounts.values()]
+    .filter(v => v.count >= 2)
+    .map(v => v.text);
+
+  // Patch ROADMAP.md
+  let updated = false;
+  withPlanningLock(cwd, () => {
+    let content = fs.readFileSync(roadmapPath, 'utf-8');
+
+    // Find the phase section.
+    // #3537: padding-tolerant fragment so the caller's resolved padded id
+    // matches un-padded ROADMAP headings.
+    const phaseEscaped = phaseMarkdownRegexSource(phaseNum);
+    const phaseHeaderPattern = new RegExp(`(#{2,4}\\s*Phase\\s+${phaseEscaped}:[^\\n]*)`, 'i');
+    const phaseMatch = content.match(phaseHeaderPattern);
+    if (!phaseMatch) return;
+
+    const phaseStart = phaseMatch.index;
+    const restAfterHeader = content.slice(phaseStart);
+    const nextPhaseOffset = restAfterHeader.slice(1).search(/\n#{2,4}\s+Phase\s+\d/i);
+    const phaseEnd = nextPhaseOffset >= 0 ? phaseStart + 1 + nextPhaseOffset : content.length;
+    const phaseSection = content.slice(phaseStart, phaseEnd);
+
+    // Idempotency: skip if annotation markers already present
+    if (
+      /\*\*Wave\s+\d+/i.test(phaseSection) ||
+      /\*\*Cross-cutting constraints:\*\*/i.test(phaseSection)
+    ) return;
+
+    // Find the Plans: section within the phase section.
+    // #3691 Bug 1: `Plans:\s*\n` required no text after the colon, missing variants like
+    // `Plans: 3 plans across 2 waves\n` or `**Plans:** 3 plans\n` (bold-wrapped).
+    // `\*{0,2}Plans\*{0,2}:[^\n]*\n` accepts any text (or none) after the colon
+    // and tolerates optional `**` markdown bold wrappers on either side.
+    // The checklist group uses `+` (not `*`) so that a bold `**Plans:**` description
+    // line with no immediately-following checklist items (e.g. a summary line above a
+    // separate bare `Plans:` block) does not consume the match and prevent the actual
+    // list from being found.
+    // Review fix (F2): `(?:^|\n)` anchors the match to start-of-line so mid-line
+    // occurrences like `***Plans:***` embedded in a sentence or `OpenPlans: foo`
+    // do not trigger a false match. Groups 1 and 2 retain the same semantics.
+    const plansBlockMatch = phaseSection.match(/(?:^|\n)(\*{0,2}Plans\*{0,2}:[^\n]*\n)((?:\s*-\s*\[[ x]\][^\n]*\n?)+)/i);
+    if (!plansBlockMatch) return;
+
+    const plansHeader = plansBlockMatch[1];
+    const existingList = plansBlockMatch[2];
+    const listLines = existingList.split('\n').filter(l => /^\s*-\s*\[/.test(l));
+
+    if (listLines.length === 0) return;
+
+    // Build wave-annotated plan list
+    const linesByWave = new Map();
+    for (const line of listLines) {
+      // Match plan ID from line: "- [ ] 01-01-PLAN.md — ..." or "- [ ] 01-01: ..."
+      // #3691 Bug 3: `[\w-]+?` excluded `.`, so decimal IDs like `02.3-01` were captured
+      // as `02` only and never matched planData entries. `[\w.-]+?` preserves the
+      // terminating alternation (`-PLAN.md|.md|:|\s—`) as the boundary anchor.
+      const idMatch = line.match(/\[\s*[x ]\s*\]\s*([\w.-]+?)(?:-PLAN\.md|\.md|:|\s—)/i);
+      const planId = idMatch ? idMatch[1] : null;
+      // Review fix (F3): reject malformed IDs that start with `.`, contain consecutive
+      // dots, or otherwise violate the `^\w[\w.-]*$` contract. A leading-dot ID
+      // (e.g. `.invalid-PLAN.md`) would silently default to wave 1 — defensively
+      // skip the line instead so corrupted ROADMAP entries don't corrupt wave layout.
+      if (planId && !/^\w[\w.-]*$/.test(planId)) continue;
+      const planEntry = planId ? planData.find(p => p.planId === planId) : null;
+      const wave = planEntry ? planEntry.wave : 1;
+      if (!linesByWave.has(wave)) linesByWave.set(wave, []);
+      linesByWave.get(wave).push(line);
+    }
+
+    const annotatedLines = [];
+    const sortedWaves = [...linesByWave.keys()].sort((a, b) => a - b);
+    for (let i = 0; i < sortedWaves.length; i++) {
+      const w = sortedWaves[i];
+      const waveLines = linesByWave.get(w);
+      if (sortedWaves.length > 1) {
+        const dep = i > 0 ? ` *(blocked on Wave ${sortedWaves[i - 1]} completion)*` : '';
+        annotatedLines.push(`**Wave ${w}**${dep}`);
+      }
+      annotatedLines.push(...waveLines);
+      if (i < sortedWaves.length - 1) annotatedLines.push('');
+    }
+
+    // Append cross-cutting constraints subsection if any found
+    if (crossCuttingTruths.length > 0) {
+      annotatedLines.push('');
+      annotatedLines.push('**Cross-cutting constraints:**');
+      for (const t of crossCuttingTruths) {
+        annotatedLines.push(`- ${t}`);
+      }
+    }
+
+    const newListBlock = annotatedLines.join('\n') + '\n';
+    const newPhaseSection = phaseSection.replace(
+      plansBlockMatch[0],
+      plansHeader + newListBlock
+    );
+
+    const nextContent = content.slice(0, phaseStart) + newPhaseSection + content.slice(phaseEnd);
+    if (nextContent === content) return;
+    platformWriteSync(roadmapPath, nextContent);
+    updated = true;
+  });
+
+  output({
+    updated,
+    phase: phaseNum,
+    waves: waves.length,
+    cross_cutting_constraints: crossCuttingTruths.length,
+  }, raw, updated ? `annotated ${waves.length} wave(s), ${crossCuttingTruths.length} constraint(s)` : 'skipped (already annotated or no plan list)');
+}
+
+module.exports = {
+  cmdRoadmapGetPhase,
+  cmdRoadmapAnalyze,
+  cmdRoadmapUpdatePlanProgress,
+  cmdRoadmapAnnotateDependencies,
+};