@omiron33/omi-neuron-web 0.1.0

package/dist/api/index.cjs.map

@@ -0,0 +1 @@
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type { Database } from '../../storage/database';\nimport {\n  buildDelete,\n  buildInsert,\n  buildSelect,\n  buildUpdate,\n  buildWhereClause,\n  type SelectOptions,\n  type WhereClause,\n} from '../../storage/query-helpers';\n\nexport interface QueryOptions extends SelectOptions {\n  where?: WhereClause;\n}\n\nexport abstract class BaseRepository<T, CreateDTO, UpdateDTO> {\n  constructor(protected db: Database, protected tableName: string) {}\n\n  async findById(id: string): Promise<T | null> {\n    const { sql, values } = buildSelect(this.tableName, '*', { id });\n    const rows = await this.db.query<T>(sql, values);\n    return rows[0] ?? null;\n  }\n\n  async findAll(options?: QueryOptions): Promise<T[]> {\n    const { sql, values } = buildSelect(\n      this.tableName,\n      '*',\n      options?.where,\n      options\n    );\n    return this.db.query<T>(sql, values);\n  }\n\n  async create(data: CreateDTO): Promise<T> {\n    const { sql, values } = buildInsert(this.tableName, data as Record<string, unknown>);\n    const rows = await this.db.query<T>(sql, values);\n    return rows[0];\n  }\n\n  async update(id: string, data: UpdateDTO): Promise<T | null> {\n    const { sql, values } = buildUpdate(this.tableName, data as Record<string, unknown>, { id });\n    const rows = await this.db.query<T>(sql, values);\n    return rows[0] ?? null;\n  }\n\n  async delete(id: string): Promise<boolean> {\n    const { sql, values } = buildDelete(this.tableName, { id });\n    const count = await this.db.execute(sql, values);\n    return count > 0;\n  }\n\n  async count(where?: WhereClause): Promise<number> {\n    const whereResult = buildWhereClause(where);\n    const sql = `SELECT COUNT(*)::int as count FROM ${this.tableName} ${whereResult.clause}`;\n    const rows = await this.db.query<{ count: number }>(sql, whereResult.values);\n    return Number(rows[0]?.count ?? 0);\n  }\n}\n","import type { Database } from '../../storage/database';\nimport type { NeuronNode, NeuronNodeCreate, NeuronNodeUpdate } from '../../core/types/node';\nimport type { QueryOptions } from './base';\nimport { BaseRepository } from './base';\n\nconst mapNodeRow = (row: Record<string, unknown>): NeuronNode => ({\n  id: row.id as string,\n  slug: row.slug as string,\n  label: row.label as string,\n  nodeType: row.node_type as string,\n  domain: row.domain as string,\n  summary: (row.summary as string | null) ?? null,\n  description: (row.description as string | null) ?? null,\n  content: (row.content as string | null) ?? null,\n  metadata: (row.metadata as Record<string, unknown>) ?? {},\n  tier: (row.tier as NeuronNode['tier']) ?? undefined,\n  visualPriority: (row.visual_priority as number | undefined) ?? undefined,\n  positionOverride: (row.position_override as [number, number, number] | null) ?? null,\n  connectionCount: (row.connection_count as number | undefined) ?? 0,\n  inboundCount: (row.inbound_count as number | undefined) ?? 0,\n  outboundCount: (row.outbound_count as number | undefined) ?? 0,\n  analysisStatus: (row.analysis_status as NeuronNode['analysisStatus']) ?? 'pending',\n  analysisError: (row.analysis_error as string | null) ?? null,\n  embedding: (row.embedding as number[] | null) ?? null,\n  embeddingModel: (row.embedding_model as string | null) ?? null,\n  embeddingGeneratedAt: (row.embedding_generated_at as Date | null) ?? null,\n  clusterId: (row.cluster_id as string | null) ?? null,\n  clusterSimilarity: (row.cluster_similarity as number | null) ?? null,\n  createdAt: row.created_at as Date,\n  updatedAt: row.updated_at as Date,\n});\n\nexport class NodeRepository extends BaseRepository<NeuronNode, NeuronNodeCreate, NeuronNodeUpdate> {\n  constructor(db: Database) {\n    super(db, 'nodes');\n  }\n\n  override async findById(id: string): Promise<NeuronNode | null> {\n    const row = await this.db.queryOne<Record<string, unknown>>('SELECT * FROM nodes WHERE id = $1', [id]);\n    return row ? mapNodeRow(row) : null;\n  }\n\n  override async findAll(options?: QueryOptions): Promise<NeuronNode[]> {\n    const rows = await super.findAll(options);\n    return (rows as unknown as Record<string, unknown>[]).map(mapNodeRow);\n  }\n\n  async findBySlug(slug: string): Promise<NeuronNode | null> {\n    const row = await this.db.queryOne<Record<string, unknown>>('SELECT * FROM nodes WHERE slug = $1', [slug]);\n    return row ? mapNodeRow(row) : null;\n  }\n\n  async findByDomain(domain: string): Promise<NeuronNode[]> {\n    const rows = await this.db.query<Record<string, unknown>>('SELECT * FROM nodes WHERE domain = $1', [domain]);\n    return rows.map(mapNodeRow);\n  }\n\n  async findByCluster(clusterId: string): Promise<NeuronNode[]> {\n    const rows = await this.db.query<Record<string, unknown>>('SELECT * FROM nodes WHERE cluster_id = $1', [clusterId]);\n    return rows.map(mapNodeRow);\n  }\n\n  async search(query: string): Promise<NeuronNode[]> {\n    const rows = await this.db.query<Record<string, unknown>>(\n      `SELECT * FROM nodes WHERE label ILIKE $1 OR summary ILIKE $1 OR content ILIKE $1`,\n      [`%${query}%`]\n    );\n    return rows.map(mapNodeRow);\n  }\n\n  async batchCreate(nodes: NeuronNodeCreate[]): Promise<NeuronNode[]> {\n    const created: NeuronNode[] = [];\n    for (const node of nodes) {\n      const row = await this.db.queryOne<Record<string, unknown>>(\n        `INSERT INTO nodes (slug, label, node_type, domain, summary, description, content, metadata, tier)\n         VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9)\n         RETURNING *`,\n        [\n          node.slug,\n          node.label,\n          node.nodeType ?? 'concept',\n          node.domain ?? 'general',\n          node.summary ?? null,\n          node.description ?? null,\n          node.content ?? null,\n          node.metadata ?? {},\n          node.tier ?? null,\n        ]\n      );\n      if (row) created.push(mapNodeRow(row));\n    }\n    return created;\n  }\n\n  async updateConnectionCounts(nodeId: string): Promise<void> {\n    const inbound = await this.db.queryOne<{ count: string }>(\n      'SELECT COUNT(*)::int as count FROM edges WHERE to_node_id = $1',\n      [nodeId]\n    );\n    const outbound = await this.db.queryOne<{ count: string }>(\n      'SELECT COUNT(*)::int as count FROM edges WHERE from_node_id = $1',\n      [nodeId]\n    );\n    const inboundCount = Number(inbound?.count ?? 0);\n    const outboundCount = Number(outbound?.count ?? 0);\n    await this.db.execute(\n      'UPDATE nodes SET inbound_count = $1, outbound_count = $2, connection_count = $3 WHERE id = $4',\n      [inboundCount, outboundCount, inboundCount + outboundCount, nodeId]\n    );\n  }\n}\n","import { listNodesParamsSchema } from '../../core/schemas/api';\nimport { nodeBatchCreateSchema, nodeUpdateSchema } from '../../core/schemas/node';\nimport type { NeuronConfig } from '../../core/types/settings';\nimport { createDatabase } from '../../storage/factory';\nimport { NodeRepository } from '../repositories/node-repository';\n\nexport const createNodesRoutes = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  const repo = new NodeRepository(db);\n\n  return {\n    async GET(request: Request) {\n      const url = new URL(request.url);\n      const params = listNodesParamsSchema.parse(Object.fromEntries(url.searchParams));\n      const nodes = await repo.findAll({\n        where: {},\n        limit: params.limit,\n        offset: params.page ? (params.page - 1) * (params.limit ?? 50) : undefined,\n      });\n      return Response.json({\n        nodes,\n        pagination: {\n          page: params.page ?? 1,\n          limit: params.limit ?? nodes.length,\n          total: nodes.length,\n          totalPages: 1,\n          hasNext: false,\n          hasPrev: false,\n        },\n        meta: {\n          queryTime: 0,\n          filters: params,\n        },\n      });\n    },\n    async POST(request: Request) {\n      const body = await request.json();\n      const input = nodeBatchCreateSchema.parse(body);\n      const created = await repo.batchCreate(input.nodes);\n      return Response.json({ created, skipped: [], analysisJobId: null }, { status: 201 });\n    },\n    async PATCH(request: Request) {\n      const url = new URL(request.url);\n      const id = url.pathname.split('/').pop();\n      if (!id) return new Response('Missing id', { status: 400 });\n      const body = await request.json();\n      const input = nodeUpdateSchema.parse(body);\n      const updated = await repo.update(id, input);\n      return Response.json(updated);\n    },\n    async DELETE(request: Request) {\n      const url = new URL(request.url);\n      const id = url.pathname.split('/').pop();\n      if (!id) return new Response('Missing id', { status: 400 });\n      const deleted = await repo.delete(id);\n      return Response.json({ deleted, edgesRemoved: 0 });\n    },\n  };\n};\n","import type { Database } from '../../storage/database';\nimport type { NeuronEdge, NeuronEdgeCreate, NeuronEdgeUpdate } from '../../core/types/edge';\nimport { BaseRepository } from './base';\n\nconst mapEdgeRow = (row: Record<string, unknown>): NeuronEdge => ({\n  id: row.id as string,\n  fromNodeId: row.from_node_id as string,\n  toNodeId: row.to_node_id as string,\n  relationshipType: row.relationship_type as string,\n  strength: Number(row.strength ?? 0.5),\n  confidence: Number(row.confidence ?? 1),\n  evidence: (row.evidence as NeuronEdge['evidence']) ?? [],\n  label: (row.label as string | null) ?? null,\n  description: (row.description as string | null) ?? null,\n  metadata: (row.metadata as Record<string, unknown>) ?? {},\n  source: row.source as NeuronEdge['source'],\n  sourceModel: (row.source_model as string | null) ?? null,\n  createdAt: row.created_at as Date,\n  updatedAt: row.updated_at as Date,\n  bidirectional: Boolean(row.bidirectional ?? false),\n});\n\nexport class EdgeRepository extends BaseRepository<NeuronEdge, NeuronEdgeCreate, NeuronEdgeUpdate> {\n  constructor(db: Database) {\n    super(db, 'edges');\n  }\n\n  override async findById(id: string): Promise<NeuronEdge | null> {\n    const row = await this.db.queryOne<Record<string, unknown>>('SELECT * FROM edges WHERE id = $1', [id]);\n    return row ? mapEdgeRow(row) : null;\n  }\n\n  override async findAll(): Promise<NeuronEdge[]> {\n    const rows = await this.db.query<Record<string, unknown>>('SELECT * FROM edges');\n    return rows.map(mapEdgeRow);\n  }\n\n  async findByNodeId(nodeId: string, direction: 'inbound' | 'outbound' | 'both' = 'both') {\n    let sql = 'SELECT * FROM edges WHERE from_node_id = $1 OR to_node_id = $1';\n    if (direction === 'inbound') {\n      sql = 'SELECT * FROM edges WHERE to_node_id = $1';\n    }\n    if (direction === 'outbound') {\n      sql = 'SELECT * FROM edges WHERE from_node_id = $1';\n    }\n    const rows = await this.db.query<Record<string, unknown>>(sql, [nodeId]);\n    return rows.map(mapEdgeRow);\n  }\n\n  async findBetweenNodes(fromId: string, toId: string): Promise<NeuronEdge[]> {\n    const rows = await this.db.query<Record<string, unknown>>(\n      'SELECT * FROM edges WHERE from_node_id = $1 AND to_node_id = $2',\n      [fromId, toId]\n    );\n    return rows.map(mapEdgeRow);\n  }\n\n  async deleteByNodeId(nodeId: string): Promise<number> {\n    return this.db.execute('DELETE FROM edges WHERE from_node_id = $1 OR to_node_id = $1', [nodeId]);\n  }\n\n  async batchCreate(edges: NeuronEdgeCreate[]): Promise<NeuronEdge[]> {\n    const created: NeuronEdge[] = [];\n    for (const edge of edges) {\n      const row = await this.db.queryOne<Record<string, unknown>>(\n        `INSERT INTO edges (from_node_id, to_node_id, relationship_type, strength, confidence, evidence, label, description, metadata, source, bidirectional)\n         VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, 'manual', $10)\n         RETURNING *`,\n        [\n          edge.fromNodeId,\n          edge.toNodeId,\n          edge.relationshipType ?? 'related_to',\n          edge.strength ?? 0.5,\n          edge.confidence ?? 1,\n          edge.evidence ?? [],\n          edge.label ?? null,\n          edge.description ?? null,\n          edge.metadata ?? {},\n          edge.bidirectional ?? false,\n        ]\n      );\n      if (row) created.push(mapEdgeRow(row));\n    }\n    return created;\n  }\n}\n","import { listEdgesParamsSchema } from '../../core/schemas/api';\nimport { edgeCreateSchema, edgeUpdateSchema } from '../../core/schemas/edge';\nimport type { NeuronConfig } from '../../core/types/settings';\nimport { createDatabase } from '../../storage/factory';\nimport { EdgeRepository } from '../repositories/edge-repository';\n\nexport const createEdgesRoutes = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  const repo = new EdgeRepository(db);\n\n  return {\n    async GET(request: Request) {\n      const url = new URL(request.url);\n      const params = listEdgesParamsSchema.parse(Object.fromEntries(url.searchParams));\n      const edges = await repo.findAll();\n      return Response.json({\n        edges,\n        pagination: {\n          page: params.page ?? 1,\n          limit: params.limit ?? edges.length,\n          total: edges.length,\n          totalPages: 1,\n          hasNext: false,\n          hasPrev: false,\n        },\n      });\n    },\n    async POST(request: Request) {\n      const body = await request.json();\n      const input = edgeCreateSchema.array().safeParse(body.edges ?? body);\n      if (!input.success) {\n        return Response.json({ error: input.error.message }, { status: 400 });\n      }\n      const created = await repo.batchCreate(input.data);\n      return Response.json({ created, errors: [] }, { status: 201 });\n    },\n    async PATCH(request: Request) {\n      const url = new URL(request.url);\n      const id = url.pathname.split('/').pop();\n      if (!id) return new Response('Missing id', { status: 400 });\n      const body = await request.json();\n      const input = edgeUpdateSchema.parse(body);\n      const updated = await repo.update(id, input);\n      return Response.json(updated);\n    },\n    async DELETE(request: Request) {\n      const url = new URL(request.url);\n      const id = url.pathname.split('/').pop();\n      if (!id) return new Response('Missing id', { status: 400 });\n      const deleted = await repo.delete(id);\n      return Response.json({ deleted });\n    },\n  };\n};\n","import type { Database } from '../storage/database';\nimport type {\n  ExpandGraphRequest,\n  ExpandGraphResponse,\n  FindPathRequest,\n  FindPathResponse,\n  GetGraphParams,\n  GetGraphResponse,\n} from '../core/types/api';\nimport type { NeuronVisualEdge, NeuronVisualNode } from '../core/types';\n\nconst mapVisualNode = (row: Record<string, unknown>): NeuronVisualNode => ({\n  id: row.id as string,\n  slug: row.slug as string,\n  label: row.label as string,\n  domain: row.domain as string,\n  tier: (row.tier as NeuronVisualNode['tier']) ?? undefined,\n  metadata: (row.metadata as Record<string, unknown>) ?? {},\n  ref: (row.ref as string | null) ?? null,\n  connectionCount: Number(row.connection_count ?? 0),\n  position: (row.position_override as [number, number, number] | null) ?? undefined,\n});\n\nconst mapVisualEdge = (row: Record<string, unknown>): NeuronVisualEdge => ({\n  id: row.id as string,\n  from: row.from_slug as string,\n  to: row.to_slug as string,\n  relationshipType: row.relationship_type as string,\n  strength: Number(row.strength ?? 0.5),\n  label: (row.label as string | null) ?? null,\n});\n\nexport class GraphQueryBuilder {\n  constructor(private db: Database) {}\n\n  buildGraphQuery(params: GetGraphParams): { sql: string; values: unknown[] } {\n    const values: unknown[] = [];\n    const filters: string[] = [];\n\n    if (params.domains?.length) {\n      values.push(params.domains);\n      filters.push(`domain = ANY($${values.length})`);\n    }\n    if (params.nodeTypes?.length) {\n      values.push(params.nodeTypes);\n      filters.push(`node_type = ANY($${values.length})`);\n    }\n    if (params.clusterIds?.length) {\n      values.push(params.clusterIds);\n      filters.push(`cluster_id = ANY($${values.length})`);\n    }\n    if (params.nodeIds?.length) {\n      values.push(params.nodeIds);\n      filters.push(`id = ANY($${values.length})`);\n    }\n\n    const where = filters.length ? `WHERE ${filters.join(' AND ')}` : '';\n    const limit = params.maxNodes ? `LIMIT ${params.maxNodes}` : '';\n\n    const sql = `\n      WITH filtered_nodes AS (\n        SELECT * FROM nodes\n        ${where}\n        ${limit}\n      )\n      SELECT * FROM filtered_nodes;\n    `;\n\n    return { sql, values };\n  }\n\n  buildExpansionQuery(params: ExpandGraphRequest): { sql: string; values: unknown[] } {\n    const values: unknown[] = [params.fromNodeIds, params.depth ?? 1];\n    const sql = `\n      WITH RECURSIVE expanded AS (\n        SELECT id, slug, label, domain, tier, metadata, position_override, connection_count, 1 as depth\n        FROM nodes\n        WHERE id = ANY($1)\n\n        UNION ALL\n\n        SELECT n.id, n.slug, n.label, n.domain, n.tier, n.metadata, n.position_override, n.connection_count, e.depth + 1\n        FROM expanded e\n        JOIN edges ed ON ed.from_node_id = e.id OR ed.to_node_id = e.id\n        JOIN nodes n ON (n.id = ed.from_node_id OR n.id = ed.to_node_id)\n        WHERE e.depth < $2\n      )\n      SELECT DISTINCT * FROM expanded;\n    `;\n\n    return { sql, values };\n  }\n\n  buildPathQuery(params: FindPathRequest): { sql: string; values: unknown[] } {\n    const values: unknown[] = [params.fromNodeId, params.toNodeId, params.maxDepth ?? 5];\n    const sql = `\n      WITH RECURSIVE paths AS (\n        SELECT ARRAY[from_node_id, to_node_id] as path,\n               ARRAY[id] as edge_ids,\n               strength as total_strength,\n               1 as depth\n        FROM edges\n        WHERE from_node_id = $1\n\n        UNION ALL\n\n        SELECT p.path || e.to_node_id,\n               p.edge_ids || e.id,\n               p.total_strength + e.strength,\n               p.depth + 1\n        FROM paths p\n        JOIN edges e ON e.from_node_id = p.path[array_upper(p.path, 1)]\n        WHERE NOT e.to_node_id = ANY(p.path)\n          AND p.depth < $3\n      )\n      SELECT * FROM paths\n      WHERE path[array_upper(path, 1)] = $2\n      ORDER BY array_length(path, 1), total_strength DESC;\n    `;\n\n    return { sql, values };\n  }\n\n  async getGraph(params: GetGraphParams): Promise<GetGraphResponse> {\n    const { sql, values } = this.buildGraphQuery(params);\n    const nodes = await this.db.query<Record<string, unknown>>(sql, values);\n    const nodeIds = nodes.map((node) => node.id as string);\n\n    const edges = await this.db.query<Record<string, unknown>>(\n      `SELECT e.*, n1.slug as from_slug, n2.slug as to_slug\n       FROM edges e\n       JOIN nodes n1 ON e.from_node_id = n1.id\n       JOIN nodes n2 ON e.to_node_id = n2.id\n       WHERE e.from_node_id = ANY($1) AND e.to_node_id = ANY($1)`,\n      [nodeIds]\n    );\n\n    return {\n      nodes: nodes.map(mapVisualNode),\n      edges: edges.map(mapVisualEdge),\n      clusters: [],\n      meta: {\n        totalNodes: nodes.length,\n        totalEdges: edges.length,\n        truncated: Boolean(params.maxNodes && nodes.length >= params.maxNodes),\n        queryTime: 0,\n      },\n    };\n  }\n\n  async expandGraph(params: ExpandGraphRequest): Promise<ExpandGraphResponse> {\n    const { sql, values } = this.buildExpansionQuery(params);\n    const nodes = await this.db.query<Record<string, unknown>>(sql, values);\n    const nodeIds = nodes.map((node) => node.id as string);\n\n    const edges = await this.db.query<Record<string, unknown>>(\n      `SELECT e.*, n1.slug as from_slug, n2.slug as to_slug\n       FROM edges e\n       JOIN nodes n1 ON e.from_node_id = n1.id\n       JOIN nodes n2 ON e.to_node_id = n2.id\n       WHERE e.from_node_id = ANY($1) AND e.to_node_id = ANY($1)`,\n      [nodeIds]\n    );\n\n    return {\n      nodes: nodes.map(mapVisualNode),\n      edges: edges.map(mapVisualEdge),\n    };\n  }\n\n  async findPaths(params: FindPathRequest): Promise<FindPathResponse> {\n    const { sql, values } = this.buildPathQuery(params);\n    const rows = await this.db.query<{ path: string[]; edge_ids: string[]; total_strength: number }>(\n      sql,\n      values\n    );\n\n    return {\n      paths: rows.map((row) => ({\n        nodes: row.path,\n        edges: row.edge_ids,\n        length: row.path.length,\n        totalStrength: row.total_strength,\n      })),\n    };\n  }\n}\n","import { expandGraphRequestSchema, findPathRequestSchema, getGraphParamsSchema } from '../../core/schemas/api';\nimport type { NeuronConfig } from '../../core/types/settings';\nimport { createDatabase } from '../../storage/factory';\nimport { GraphQueryBuilder } from '../query-builder';\n\nexport const createGraphRoutes = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  const builder = new GraphQueryBuilder(db);\n\n  return {\n    async GET(request: Request) {\n      const url = new URL(request.url);\n      const params = getGraphParamsSchema.parse(Object.fromEntries(url.searchParams));\n      const result = await builder.getGraph({\n        ...params,\n        nodeTypes: params.nodeTypes ? (Array.isArray(params.nodeTypes) ? params.nodeTypes : [params.nodeTypes]) : undefined,\n        domains: params.domains ? (Array.isArray(params.domains) ? params.domains : [params.domains]) : undefined,\n        clusterIds: params.clusterIds ? (Array.isArray(params.clusterIds) ? params.clusterIds : [params.clusterIds]) : undefined,\n        nodeIds: params.nodeIds ? (Array.isArray(params.nodeIds) ? params.nodeIds : [params.nodeIds]) : undefined,\n        relationshipTypes: params.relationshipTypes\n          ? (Array.isArray(params.relationshipTypes) ? params.relationshipTypes : [params.relationshipTypes])\n          : undefined,\n      });\n      return Response.json(result);\n    },\n    async POST(request: Request) {\n      const url = new URL(request.url);\n      if (url.pathname.endsWith('/expand')) {\n        const body = await request.json();\n        const input = expandGraphRequestSchema.parse(body);\n        const result = await builder.expandGraph(input);\n        return Response.json(result);\n      }\n      if (url.pathname.endsWith('/path')) {\n        const body = await request.json();\n        const input = findPathRequestSchema.parse(body);\n        const result = await builder.findPaths(input);\n        return Response.json(result);\n      }\n      return new Response('Unsupported', { status: 404 });\n    },\n  };\n};\n","import type { NeuronConfig } from '../../core/types/settings';\nimport { analysisRequestSchema } from '../../core/schemas/analysis';\nimport { createDatabase } from '../../storage/factory';\nimport { EventBus } from '../../core/events/event-bus';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ClusteringEngine } from '../../core/analysis/clustering-engine';\nimport { RelationshipEngine } from '../../core/analysis/relationship-engine';\nimport { AnalysisPipeline } from '../../core/analysis/pipeline';\n\nconst buildPipeline = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  const events = new EventBus();\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: config.openai.apiKey,\n      model: config.analysis.embeddingModel,\n      batchSize: config.analysis.embeddingBatchSize,\n      rateLimit: config.analysis.openaiRateLimit,\n      cacheTTL: config.analysis.embeddingCacheTTL,\n      maxRetries: config.openai.maxRetries ?? 3,\n    },\n    db\n  );\n  const clustering = new ClusteringEngine(db, embeddings);\n  const relationships = new RelationshipEngine(db, {\n    model: config.analysis.relationshipInferenceModel,\n    minConfidence: config.analysis.relationshipMinConfidence,\n    maxPerNode: config.analysis.relationshipMaxPerNode,\n    similarityThreshold: config.analysis.clusterSimilarityThreshold,\n    includeExisting: true,\n    batchSize: 10,\n    rateLimit: config.analysis.openaiRateLimit,\n  });\n  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);\n};\n\nexport const createAnalyzeRoutes = (config: NeuronConfig) => {\n  return {\n    async POST(request: Request) {\n      const url = new URL(request.url);\n      if (url.pathname.endsWith('/cancel')) {\n        const jobId = url.pathname.split('/').slice(-2)[0];\n        const pipeline = buildPipeline(config);\n        const cancelled = await pipeline.cancelJob(jobId);\n        return Response.json({ cancelled });\n      }\n\n      const body = await request.json();\n      const input = analysisRequestSchema.parse(body);\n      const pipeline = buildPipeline(config);\n      let job;\n      if (input.action === 'embeddings') {\n        job = await pipeline.runEmbeddings(input.options ?? {});\n      } else if (input.action === 'cluster') {\n        job = await pipeline.runClustering(input.options ?? {});\n      } else if (input.action === 'infer_relationships') {\n        job = await pipeline.runRelationships(input.options ?? {});\n      } else {\n        job = await pipeline.runFull(input.options ?? {});\n      }\n      return Response.json({ jobId: job.id, status: job.status });\n    },\n    async GET(request: Request) {\n      const url = new URL(request.url);\n      if (url.pathname.endsWith('/history')) {\n        const pipeline = buildPipeline(config);\n        const jobs = await pipeline.listJobs({ limit: 50 });\n        return Response.json({ jobs });\n      }\n      const jobId = url.pathname.split('/').pop();\n      if (!jobId) return new Response('Missing job id', { status: 400 });\n      const pipeline = buildPipeline(config);\n      const job = await pipeline.getJob(jobId);\n      return Response.json({ job });\n    },\n  };\n};\n","import type { Database } from '../../storage/database';\nimport type { NeuronSettings, NeuronSettingsUpdate } from '../../core/types/settings';\nimport { DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from '../../core/types/settings';\n\nconst deepMerge = (target: Record<string, unknown>, source: Record<string, unknown>) => {\n  const output = { ...target };\n  Object.entries(source).forEach(([key, value]) => {\n    if (value && typeof value === 'object' && !Array.isArray(value)) {\n      output[key] = deepMerge((output[key] as Record<string, unknown>) ?? {}, value as Record<string, unknown>);\n    } else if (value !== undefined) {\n      output[key] = value as unknown;\n    }\n  });\n  return output;\n};\n\nconst defaultSettings = (): NeuronSettings => ({\n  instance: {\n    name: 'default',\n    version: '0.1.0',\n    repoName: 'omi-neuron-web',\n  },\n  visualization: DEFAULT_VISUALIZATION_SETTINGS,\n  analysis: DEFAULT_ANALYSIS_SETTINGS,\n  nodeTypes: [],\n  domains: [],\n  relationshipTypes: [],\n});\n\nexport class SettingsRepository {\n  constructor(private db: Database) {}\n\n  async get(): Promise<NeuronSettings> {\n    const row = await this.db.queryOne<{\n      visualization: Record<string, unknown> | null;\n      analysis: Record<string, unknown> | null;\n      node_types: NeuronSettings['nodeTypes'] | null;\n      domains: NeuronSettings['domains'] | null;\n      relationship_types: NeuronSettings['relationshipTypes'] | null;\n    }>('SELECT visualization, analysis, node_types, domains, relationship_types FROM settings WHERE id = $1', [\n      'default',\n    ]);\n\n    if (!row) {\n      return defaultSettings();\n    }\n\n    return {\n      ...defaultSettings(),\n      visualization: { ...DEFAULT_VISUALIZATION_SETTINGS, ...(row.visualization ?? {}) },\n      analysis: { ...DEFAULT_ANALYSIS_SETTINGS, ...(row.analysis ?? {}) },\n      nodeTypes: row.node_types ?? [],\n      domains: row.domains ?? [],\n      relationshipTypes: row.relationship_types ?? [],\n    };\n  }\n\n  async update(settings: NeuronSettingsUpdate): Promise<NeuronSettings> {\n    const current = await this.get();\n    const merged = deepMerge(current as unknown as Record<string, unknown>, settings as Record<string, unknown>);\n    await this.db.execute(\n      `INSERT INTO settings (id, visualization, analysis, node_types, domains, relationship_types)\n       VALUES ('default', $1, $2, $3, $4, $5)\n       ON CONFLICT (id) DO UPDATE SET visualization = $1, analysis = $2, node_types = $3, domains = $4, relationship_types = $5, updated_at = NOW()`,\n      [\n        merged.visualization,\n        merged.analysis,\n        merged.nodeTypes,\n        merged.domains,\n        merged.relationshipTypes,\n      ]\n    );\n    return merged as unknown as NeuronSettings;\n  }\n\n  async reset(sections?: string[]): Promise<NeuronSettings> {\n    const defaults = defaultSettings() as unknown as Record<string, unknown>;\n    if (sections?.length) {\n      const current = await this.get();\n      const updated = { ...(current as unknown as Record<string, unknown>) };\n      sections.forEach((section) => {\n        updated[section] = defaults[section];\n      });\n      return this.update(updated as NeuronSettingsUpdate);\n    }\n\n    await this.db.execute(\n      `INSERT INTO settings (id, visualization, analysis, node_types, domains, relationship_types)\n       VALUES ('default', $1, $2, $3, $4, $5)\n       ON CONFLICT (id) DO UPDATE SET visualization = $1, analysis = $2, node_types = $3, domains = $4, relationship_types = $5, updated_at = NOW()`,\n      [\n        defaults.visualization,\n        defaults.analysis,\n        defaults.nodeTypes,\n        defaults.domains,\n        defaults.relationshipTypes,\n      ]\n    );\n\n    return defaults as unknown as NeuronSettings;\n  }\n}\n","import type { NeuronConfig, NeuronSettingsUpdate } from '../../core/types/settings';\nimport { neuronSettingsUpdateSchema } from '../../core/schemas/settings';\nimport { createDatabase } from '../../storage/factory';\nimport { SettingsRepository } from '../repositories/settings-repository';\n\nexport const createSettingsRoutes = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  const repo = new SettingsRepository(db);\n\n  return {\n    async GET() {\n      const settings = await repo.get();\n      return Response.json({ settings });\n    },\n    async PATCH(request: Request) {\n      const body = await request.json();\n      const input = neuronSettingsUpdateSchema.parse(body) as NeuronSettingsUpdate;\n      const settings = await repo.update(input);\n      return Response.json({ settings });\n    },\n    async POST(request: Request) {\n      const url = new URL(request.url);\n      if (!url.pathname.endsWith('/reset')) {\n        return new Response('Not found', { status: 404 });\n      }\n      const body = await request.json().catch(() => ({}));\n      const settings = await repo.reset(body?.sections);\n      return Response.json({ settings });\n    },\n  };\n};\n","import type { NeuronConfig } from '../../core/types/settings';\nimport { semanticSearchRequestSchema, findSimilarRequestSchema } from '../../core/schemas/api';\nimport { createDatabase } from '../../storage/factory';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ScoringEngine } from '../../core/analysis/scoring-engine';\n\nexport const createSearchRoutes = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: config.openai.apiKey,\n      model: config.analysis.embeddingModel,\n      batchSize: config.analysis.embeddingBatchSize,\n      rateLimit: config.analysis.openaiRateLimit,\n      cacheTTL: config.analysis.embeddingCacheTTL,\n      maxRetries: config.openai.maxRetries ?? 3,\n    },\n    db\n  );\n  const scoring = new ScoringEngine(db);\n\n  return {\n    async POST(request: Request) {\n      const url = new URL(request.url);\n      if (url.pathname.endsWith('/similar')) {\n        const body = await request.json();\n        const input = findSimilarRequestSchema.parse(body);\n        const results = await scoring.findSimilar(input.nodeId, input.limit ?? 10, input.excludeConnected ?? false);\n        return Response.json({ results });\n      }\n\n      const body = await request.json();\n      const input = semanticSearchRequestSchema.parse(body);\n      const embedding = await embeddings.generateEmbedding(input.query);\n      const results = await scoring.scoreForQuery(embedding);\n      return Response.json({ results: results.slice(0, input.limit ?? 10) });\n    },\n  };\n};\n","import type { NeuronConfig } from '../../core/types/settings';\nimport { createDatabase } from '../../storage/factory';\n\nexport const createHealthRoutes = (config: NeuronConfig) => {\n  const db = createDatabase(config);\n  return {\n    async GET() {\n      const ok = await db.isConnected();\n      return Response.json({ status: ok ? 'ok' : 'degraded', time: new Date().toISOString() });\n    },\n  };\n};\n","import type { NeuronConfig } from '../../core/types/settings';\nimport { createNodesRoutes } from './nodes';\nimport { createEdgesRoutes } from './edges';\nimport { createGraphRoutes } from './graph';\nimport { createAnalyzeRoutes } from './analyze';\nimport { createSettingsRoutes } from './settings';\nimport { createSearchRoutes } from './search';\nimport { createHealthRoutes } from './health';\n\nexport function createNeuronRoutes(config: NeuronConfig) {\n  return {\n    nodes: createNodesRoutes(config),\n    edges: createEdgesRoutes(config),\n    graph: createGraphRoutes(config),\n    analyze: createAnalyzeRoutes(config),\n    settings: createSettingsRoutes(config),\n    search: createSearchRoutes(config),\n    health: createHealthRoutes(config),\n  };\n}\n","import type { Database } from '../../storage/database';\nimport type { NeuronCluster } from '../../core/types/cluster';\nimport { BaseRepository } from './base';\n\nconst mapClusterRow = (row: Record<string, unknown>): NeuronCluster => ({\n  id: row.id as string,\n  label: row.label as string,\n  clusterType: (row.cluster_type as string | null) ?? 'topic',\n  centroid: (row.centroid as number[] | null) ?? [],\n  memberCount: Number(row.member_count ?? 0),\n  avgSimilarity: (row.avg_similarity as number | null) ?? 0,\n  cohesion: (row.cohesion as number | null) ?? 0,\n  description: (row.description as string | null) ?? null,\n  keywords: (row.keywords as string[] | null) ?? [],\n  metadata: (row.metadata as Record<string, unknown>) ?? {},\n  createdAt: row.created_at as Date,\n  updatedAt: row.updated_at as Date,\n  lastRecomputedAt: (row.last_recomputed_at as Date | null) ?? null,\n});\n\nexport class ClusterRepository extends BaseRepository<NeuronCluster, NeuronCluster, Partial<NeuronCluster>> {\n  constructor(db: Database) {\n    super(db, 'clusters');\n  }\n\n  override async findById(id: string): Promise<NeuronCluster | null> {\n    const row = await this.db.queryOne<Record<string, unknown>>('SELECT * FROM clusters WHERE id = $1', [id]);\n    return row ? mapClusterRow(row) : null;\n  }\n\n  async findWithMembers(clusterId: string): Promise<{\n    cluster: NeuronCluster | null;\n    members: Array<{ nodeId: string; similarityScore: number }>;\n  }> {\n    const cluster = await this.findById(clusterId);\n    const memberships = await this.db.query<{ node_id: string; similarity_score: number }>(\n      'SELECT node_id, similarity_score FROM cluster_memberships WHERE cluster_id = $1',\n      [clusterId]\n    );\n    return {\n      cluster,\n      members: memberships.map((row) => ({ nodeId: row.node_id, similarityScore: row.similarity_score })),\n    };\n  }\n\n  async updateCentroid(clusterId: string, centroid: number[]): Promise<void> {\n    await this.db.execute('UPDATE clusters SET centroid = $1 WHERE id = $2', [centroid, clusterId]);\n  }\n\n  async addMember(clusterId: string, nodeId: string, similarity: number): Promise<void> {\n    await this.db.execute(\n      'INSERT INTO cluster_memberships (node_id, cluster_id, similarity_score, is_primary) VALUES ($1, $2, $3, true) ON CONFLICT (node_id, cluster_id) DO UPDATE SET similarity_score = $3',\n      [nodeId, clusterId, similarity]\n    );\n  }\n\n  async removeMember(clusterId: string, nodeId: string): Promise<void> {\n    await this.db.execute('DELETE FROM cluster_memberships WHERE cluster_id = $1 AND node_id = $2', [\n      clusterId,\n      nodeId,\n    ]);\n  }\n}\n","import type { Database } from '../../storage/database';\nimport type { AnalysisRun } from '../../core/types/analysis';\nimport { BaseRepository } from './base';\n\nexport class AnalysisRunRepository extends BaseRepository<AnalysisRun, AnalysisRun, Partial<AnalysisRun>> {\n  constructor(db: Database) {\n    super(db, 'analysis_runs');\n  }\n\n  async findActive(): Promise<AnalysisRun[]> {\n    return this.db.query<AnalysisRun>('SELECT * FROM analysis_runs WHERE status = $1', ['running']);\n  }\n\n  async updateProgress(id: string, progress: number): Promise<void> {\n    await this.db.execute('UPDATE analysis_runs SET progress = $1 WHERE id = $2', [progress, id]);\n  }\n\n  async markCompleted(id: string, results: object): Promise<void> {\n    await this.db.execute(\n      'UPDATE analysis_runs SET status = $1, results = $2, completed_at = NOW() WHERE id = $3',\n      ['completed', results, id]\n    );\n  }\n\n  async markFailed(id: string, error: string): Promise<void> {\n    await this.db.execute(\n      'UPDATE analysis_runs SET status = $1, error_message = $2, completed_at = NOW() WHERE id = $3',\n      ['failed', error, id]\n    );\n  }\n}\n","import type { RouteHandler } from './error-handler';\n\nexport interface CorsOptions {\n  origins?: string[];\n}\n\nexport const withCors = (options?: CorsOptions) => (handler: RouteHandler): RouteHandler => async (request) => {\n  if (request.method === 'OPTIONS') {\n    return new Response(null, {\n      status: 204,\n      headers: buildCorsHeaders(options),\n    });\n  }\n\n  const response = await handler(request);\n  const headers = new Headers(response.headers);\n  const corsHeaders = buildCorsHeaders(options);\n  corsHeaders.forEach((value, key) => headers.set(key, value));\n  return new Response(response.body, { status: response.status, headers });\n};\n\nconst buildCorsHeaders = (options?: CorsOptions): Headers => {\n  const headers = new Headers();\n  headers.set('Access-Control-Allow-Origin', options?.origins?.join(',') ?? '*');\n  headers.set('Access-Control-Allow-Methods', 'GET,POST,PATCH,DELETE,OPTIONS');\n  headers.set('Access-Control-Allow-Headers', 'Content-Type,Authorization');\n  return headers;\n};\n","export class ApiError extends Error {\n  constructor(\n    message: string,\n    public code: string,\n    public statusCode: number,\n    public details?: Record<string, unknown>\n  ) {\n    super(message);\n  }\n}\n\nexport type RouteHandler = (request: Request) => Promise<Response>;\n\nexport const handleError = (error: unknown): Response => {\n  if (error instanceof ApiError) {\n    return Response.json(\n      {\n        error: error.message,\n        code: error.code,\n        statusCode: error.statusCode,\n        details: error.details,\n      },\n      { status: error.statusCode }\n    );\n  }\n\n  const message = error instanceof Error ? error.message : 'Internal error';\n  return Response.json(\n    {\n      error: message,\n      code: 'INTERNAL_ERROR',\n      statusCode: 500,\n    },\n    { status: 500 }\n  );\n};\n\nexport const withErrorHandler = (handler: RouteHandler): RouteHandler => async (request) => {\n  try {\n    return await handler(request);\n  } catch (error) {\n    return handleError(error);\n  }\n};\n","import type { RouteHandler } from './error-handler';\n\nexport const withLogging = (handler: RouteHandler): RouteHandler => async (request) => {\n  const start = Date.now();\n  const response = await handler(request);\n  const duration = Date.now() - start;\n  // eslint-disable-next-line no-console\n  console.log(`[omi-neuron] ${request.method} ${request.url} -> ${response.status} (${duration}ms)`);\n  return response;\n};\n","import type { RouteHandler } from './error-handler';\n\nexport const withTiming = (handler: RouteHandler): RouteHandler => async (request) => {\n  const start = Date.now();\n  const response = await handler(request);\n  const duration = Date.now() - start;\n  const headers = new Headers(response.headers);\n  headers.set('X-Response-Time', `${duration}ms`);\n  return new Response(response.body, { status: response.status, headers });\n};\n","import type { RouteHandler } from './error-handler';\nimport { withCors, type CorsOptions } from './cors';\nimport { withErrorHandler } from './error-handler';\nimport { withLogging } from './logging';\nimport { withTiming } from './timing';\n\nexport interface MiddlewareOptions {\n  cors?: CorsOptions;\n}\n\nconst compose = (...handlers: Array<(handler: RouteHandler) => RouteHandler>) => {\n  return (handler: RouteHandler) => handlers.reduceRight((acc, fn) => fn(acc), handler);\n};\n\nexport const withNeuronMiddleware = (handler: RouteHandler, options?: MiddlewareOptions) => {\n  const chain = [withErrorHandler, withLogging, withTiming];\n  if (options?.cors) {\n    chain.push(withCors(options.cors));\n  }\n  return compose(...chain)(handler);\n};\n"]}

package/dist/api/index.d.cts

@@ -0,0 +1,140 @@
+import { N as NeuronConfig, S as SelectOptions, W as WhereClause, a as NeuronCluster, b as NeuronSettings, c as NeuronSettingsUpdate, A as AnalysisRun, G as GetGraphParams, E as ExpandGraphRequest, F as FindPathRequest, d as GetGraphResponse, e as ExpandGraphResponse, f as FindPathResponse } from '../query-helpers-D8po5Mn-.cjs';
+export { g as AnalysisRequest, h as AnalysisResponse, O as ApiErrorResponse, u as CancelAnalysisResponse, p as CreateEdgesRequest, q as CreateEdgesResponse, C as CreateNodesRequest, l as CreateNodesResponse, s as DeleteEdgeResponse, D as DeleteNodeResponse, B as FindSimilarOptions, z as FindSimilarRequest, H as FindSimilarResponse, t as GetAnalysisJobResponse, m as GetNodeResponse, I as GetSettingsResponse, j as GraphFilters, Q as HealthCheckResponse, n as ListEdgesParams, o as ListEdgesResponse, L as ListNodesParams, k as ListNodesResponse, i as PaginationMeta, P as PaginationParams, R as ResetSettingsRequest, M as ResetSettingsResponse, y as SearchResult, w as SemanticSearchOptions, v as SemanticSearchRequest, x as SemanticSearchResponse, r as UpdateEdgeRequest, U as UpdateNodeRequest, J as UpdateSettingsRequest, K as UpdateSettingsResponse } from '../query-helpers-D8po5Mn-.cjs';
+import { D as Database } from '../database-B0vplyA4.cjs';
+import { b as NeuronNode, d as NeuronNodeCreate, e as NeuronNodeUpdate, c as NeuronEdge, f as NeuronEdgeCreate, g as NeuronEdgeUpdate } from '../edge-BzsYe2Ed.cjs';
+import 'pg';
+
+declare function createNeuronRoutes(config: NeuronConfig): {
+    nodes: {
+        GET(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+        PATCH(request: Request): Promise<Response>;
+        DELETE(request: Request): Promise<Response>;
+    };
+    edges: {
+        GET(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+        PATCH(request: Request): Promise<Response>;
+        DELETE(request: Request): Promise<Response>;
+    };
+    graph: {
+        GET(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+    };
+    analyze: {
+        POST(request: Request): Promise<Response>;
+        GET(request: Request): Promise<Response>;
+    };
+    settings: {
+        GET(): Promise<Response>;
+        PATCH(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+    };
+    search: {
+        POST(request: Request): Promise<Response>;
+    };
+    health: {
+        GET(): Promise<Response>;
+    };
+};
+
+interface QueryOptions extends SelectOptions {
+    where?: WhereClause;
+}
+declare abstract class BaseRepository<T, CreateDTO, UpdateDTO> {
+    protected db: Database;
+    protected tableName: string;
+    constructor(db: Database, tableName: string);
+    findById(id: string): Promise<T | null>;
+    findAll(options?: QueryOptions): Promise<T[]>;
+    create(data: CreateDTO): Promise<T>;
+    update(id: string, data: UpdateDTO): Promise<T | null>;
+    delete(id: string): Promise<boolean>;
+    count(where?: WhereClause): Promise<number>;
+}
+
+declare class NodeRepository extends BaseRepository<NeuronNode, NeuronNodeCreate, NeuronNodeUpdate> {
+    constructor(db: Database);
+    findById(id: string): Promise<NeuronNode | null>;
+    findAll(options?: QueryOptions): Promise<NeuronNode[]>;
+    findBySlug(slug: string): Promise<NeuronNode | null>;
+    findByDomain(domain: string): Promise<NeuronNode[]>;
+    findByCluster(clusterId: string): Promise<NeuronNode[]>;
+    search(query: string): Promise<NeuronNode[]>;
+    batchCreate(nodes: NeuronNodeCreate[]): Promise<NeuronNode[]>;
+    updateConnectionCounts(nodeId: string): Promise<void>;
+}
+
+declare class EdgeRepository extends BaseRepository<NeuronEdge, NeuronEdgeCreate, NeuronEdgeUpdate> {
+    constructor(db: Database);
+    findById(id: string): Promise<NeuronEdge | null>;
+    findAll(): Promise<NeuronEdge[]>;
+    findByNodeId(nodeId: string, direction?: 'inbound' | 'outbound' | 'both'): Promise<NeuronEdge[]>;
+    findBetweenNodes(fromId: string, toId: string): Promise<NeuronEdge[]>;
+    deleteByNodeId(nodeId: string): Promise<number>;
+    batchCreate(edges: NeuronEdgeCreate[]): Promise<NeuronEdge[]>;
+}
+
+declare class ClusterRepository extends BaseRepository<NeuronCluster, NeuronCluster, Partial<NeuronCluster>> {
+    constructor(db: Database);
+    findById(id: string): Promise<NeuronCluster | null>;
+    findWithMembers(clusterId: string): Promise<{
+        cluster: NeuronCluster | null;
+        members: Array<{
+            nodeId: string;
+            similarityScore: number;
+        }>;
+    }>;
+    updateCentroid(clusterId: string, centroid: number[]): Promise<void>;
+    addMember(clusterId: string, nodeId: string, similarity: number): Promise<void>;
+    removeMember(clusterId: string, nodeId: string): Promise<void>;
+}
+
+declare class SettingsRepository {
+    private db;
+    constructor(db: Database);
+    get(): Promise<NeuronSettings>;
+    update(settings: NeuronSettingsUpdate): Promise<NeuronSettings>;
+    reset(sections?: string[]): Promise<NeuronSettings>;
+}
+
+declare class AnalysisRunRepository extends BaseRepository<AnalysisRun, AnalysisRun, Partial<AnalysisRun>> {
+    constructor(db: Database);
+    findActive(): Promise<AnalysisRun[]>;
+    updateProgress(id: string, progress: number): Promise<void>;
+    markCompleted(id: string, results: object): Promise<void>;
+    markFailed(id: string, error: string): Promise<void>;
+}
+
+declare class GraphQueryBuilder {
+    private db;
+    constructor(db: Database);
+    buildGraphQuery(params: GetGraphParams): {
+        sql: string;
+        values: unknown[];
+    };
+    buildExpansionQuery(params: ExpandGraphRequest): {
+        sql: string;
+        values: unknown[];
+    };
+    buildPathQuery(params: FindPathRequest): {
+        sql: string;
+        values: unknown[];
+    };
+    getGraph(params: GetGraphParams): Promise<GetGraphResponse>;
+    expandGraph(params: ExpandGraphRequest): Promise<ExpandGraphResponse>;
+    findPaths(params: FindPathRequest): Promise<FindPathResponse>;
+}
+
+type RouteHandler = (request: Request) => Promise<Response>;
+
+interface CorsOptions {
+    origins?: string[];
+}
+
+interface MiddlewareOptions {
+    cors?: CorsOptions;
+}
+declare const withNeuronMiddleware: (handler: RouteHandler, options?: MiddlewareOptions) => RouteHandler;
+
+export { AnalysisRunRepository, ClusterRepository, EdgeRepository, ExpandGraphRequest, ExpandGraphResponse, FindPathRequest, FindPathResponse, GetGraphParams, GetGraphResponse, GraphQueryBuilder, type MiddlewareOptions, NodeRepository, SettingsRepository, createNeuronRoutes, withNeuronMiddleware };

package/dist/api/index.d.ts

@@ -0,0 +1,140 @@
+import { N as NeuronConfig, S as SelectOptions, W as WhereClause, a as NeuronCluster, b as NeuronSettings, c as NeuronSettingsUpdate, A as AnalysisRun, G as GetGraphParams, E as ExpandGraphRequest, F as FindPathRequest, d as GetGraphResponse, e as ExpandGraphResponse, f as FindPathResponse } from '../query-helpers-DvQTA2_Z.js';
+export { g as AnalysisRequest, h as AnalysisResponse, O as ApiErrorResponse, u as CancelAnalysisResponse, p as CreateEdgesRequest, q as CreateEdgesResponse, C as CreateNodesRequest, l as CreateNodesResponse, s as DeleteEdgeResponse, D as DeleteNodeResponse, B as FindSimilarOptions, z as FindSimilarRequest, H as FindSimilarResponse, t as GetAnalysisJobResponse, m as GetNodeResponse, I as GetSettingsResponse, j as GraphFilters, Q as HealthCheckResponse, n as ListEdgesParams, o as ListEdgesResponse, L as ListNodesParams, k as ListNodesResponse, i as PaginationMeta, P as PaginationParams, R as ResetSettingsRequest, M as ResetSettingsResponse, y as SearchResult, w as SemanticSearchOptions, v as SemanticSearchRequest, x as SemanticSearchResponse, r as UpdateEdgeRequest, U as UpdateNodeRequest, J as UpdateSettingsRequest, K as UpdateSettingsResponse } from '../query-helpers-DvQTA2_Z.js';
+import { D as Database } from '../database-B0vplyA4.js';
+import { b as NeuronNode, d as NeuronNodeCreate, e as NeuronNodeUpdate, c as NeuronEdge, f as NeuronEdgeCreate, g as NeuronEdgeUpdate } from '../edge-BzsYe2Ed.js';
+import 'pg';
+
+declare function createNeuronRoutes(config: NeuronConfig): {
+    nodes: {
+        GET(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+        PATCH(request: Request): Promise<Response>;
+        DELETE(request: Request): Promise<Response>;
+    };
+    edges: {
+        GET(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+        PATCH(request: Request): Promise<Response>;
+        DELETE(request: Request): Promise<Response>;
+    };
+    graph: {
+        GET(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+    };
+    analyze: {
+        POST(request: Request): Promise<Response>;
+        GET(request: Request): Promise<Response>;
+    };
+    settings: {
+        GET(): Promise<Response>;
+        PATCH(request: Request): Promise<Response>;
+        POST(request: Request): Promise<Response>;
+    };
+    search: {
+        POST(request: Request): Promise<Response>;
+    };
+    health: {
+        GET(): Promise<Response>;
+    };
+};
+
+interface QueryOptions extends SelectOptions {
+    where?: WhereClause;
+}
+declare abstract class BaseRepository<T, CreateDTO, UpdateDTO> {
+    protected db: Database;
+    protected tableName: string;
+    constructor(db: Database, tableName: string);
+    findById(id: string): Promise<T | null>;
+    findAll(options?: QueryOptions): Promise<T[]>;
+    create(data: CreateDTO): Promise<T>;
+    update(id: string, data: UpdateDTO): Promise<T | null>;
+    delete(id: string): Promise<boolean>;
+    count(where?: WhereClause): Promise<number>;
+}
+
+declare class NodeRepository extends BaseRepository<NeuronNode, NeuronNodeCreate, NeuronNodeUpdate> {
+    constructor(db: Database);
+    findById(id: string): Promise<NeuronNode | null>;
+    findAll(options?: QueryOptions): Promise<NeuronNode[]>;
+    findBySlug(slug: string): Promise<NeuronNode | null>;
+    findByDomain(domain: string): Promise<NeuronNode[]>;
+    findByCluster(clusterId: string): Promise<NeuronNode[]>;
+    search(query: string): Promise<NeuronNode[]>;
+    batchCreate(nodes: NeuronNodeCreate[]): Promise<NeuronNode[]>;
+    updateConnectionCounts(nodeId: string): Promise<void>;
+}
+
+declare class EdgeRepository extends BaseRepository<NeuronEdge, NeuronEdgeCreate, NeuronEdgeUpdate> {
+    constructor(db: Database);
+    findById(id: string): Promise<NeuronEdge | null>;
+    findAll(): Promise<NeuronEdge[]>;
+    findByNodeId(nodeId: string, direction?: 'inbound' | 'outbound' | 'both'): Promise<NeuronEdge[]>;
+    findBetweenNodes(fromId: string, toId: string): Promise<NeuronEdge[]>;
+    deleteByNodeId(nodeId: string): Promise<number>;
+    batchCreate(edges: NeuronEdgeCreate[]): Promise<NeuronEdge[]>;
+}
+
+declare class ClusterRepository extends BaseRepository<NeuronCluster, NeuronCluster, Partial<NeuronCluster>> {
+    constructor(db: Database);
+    findById(id: string): Promise<NeuronCluster | null>;
+    findWithMembers(clusterId: string): Promise<{
+        cluster: NeuronCluster | null;
+        members: Array<{
+            nodeId: string;
+            similarityScore: number;
+        }>;
+    }>;
+    updateCentroid(clusterId: string, centroid: number[]): Promise<void>;
+    addMember(clusterId: string, nodeId: string, similarity: number): Promise<void>;
+    removeMember(clusterId: string, nodeId: string): Promise<void>;
+}
+
+declare class SettingsRepository {
+    private db;
+    constructor(db: Database);
+    get(): Promise<NeuronSettings>;
+    update(settings: NeuronSettingsUpdate): Promise<NeuronSettings>;
+    reset(sections?: string[]): Promise<NeuronSettings>;
+}
+
+declare class AnalysisRunRepository extends BaseRepository<AnalysisRun, AnalysisRun, Partial<AnalysisRun>> {
+    constructor(db: Database);
+    findActive(): Promise<AnalysisRun[]>;
+    updateProgress(id: string, progress: number): Promise<void>;
+    markCompleted(id: string, results: object): Promise<void>;
+    markFailed(id: string, error: string): Promise<void>;
+}
+
+declare class GraphQueryBuilder {
+    private db;
+    constructor(db: Database);
+    buildGraphQuery(params: GetGraphParams): {
+        sql: string;
+        values: unknown[];
+    };
+    buildExpansionQuery(params: ExpandGraphRequest): {
+        sql: string;
+        values: unknown[];
+    };
+    buildPathQuery(params: FindPathRequest): {
+        sql: string;
+        values: unknown[];
+    };
+    getGraph(params: GetGraphParams): Promise<GetGraphResponse>;
+    expandGraph(params: ExpandGraphRequest): Promise<ExpandGraphResponse>;
+    findPaths(params: FindPathRequest): Promise<FindPathResponse>;
+}
+
+type RouteHandler = (request: Request) => Promise<Response>;
+
+interface CorsOptions {
+    origins?: string[];
+}
+
+interface MiddlewareOptions {
+    cors?: CorsOptions;
+}
+declare const withNeuronMiddleware: (handler: RouteHandler, options?: MiddlewareOptions) => RouteHandler;
+
+export { AnalysisRunRepository, ClusterRepository, EdgeRepository, ExpandGraphRequest, ExpandGraphResponse, FindPathRequest, FindPathResponse, GetGraphParams, GetGraphResponse, GraphQueryBuilder, type MiddlewareOptions, NodeRepository, SettingsRepository, createNeuronRoutes, withNeuronMiddleware };