@omiron33/omi-neuron-web 0.1.0

package/dist/cli/index.js

@@ -0,0 +1,563 @@
+#!/usr/bin/env node
+import { DockerManager } from '../chunk-TFLMPBX7.js';
+import { Database, EventBus, EmbeddingsService, ClusteringEngine, RelationshipEngine, AnalysisPipeline } from '../chunk-RQCGONPN.js';
+import { MigrationRunner } from '../chunk-PSDVPB7Y.js';
+import { Command, program } from 'commander';
+import path2 from 'path';
+import fs from 'fs/promises';
+import chalk from 'chalk';
+import { pathToFileURL } from 'url';
+import { createInterface } from 'readline/promises';
+import { stdout, stdin } from 'process';
+
+var logger = {
+  info: (message) => {
+    console.log(chalk.cyan(`[omi-neuron] ${message}`));
+  },
+  success: (message) => {
+    console.log(chalk.green(`[omi-neuron] ${message}`));
+  },
+  warn: (message) => {
+    console.warn(chalk.yellow(`[omi-neuron] ${message}`));
+  },
+  error: (message) => {
+    console.error(chalk.red(`[omi-neuron] ${message}`));
+  }
+};
+var renderTemplate = (template, values) => {
+  let output2 = template;
+  for (const [key, value] of Object.entries(values)) {
+    output2 = output2.replace(new RegExp(`{{${key}}}`, "g"), value);
+  }
+  return output2;
+};
+async function writeTemplateFile(filePath, template, values, force = false) {
+  const resolved = path2.resolve(filePath);
+  await fs.mkdir(path2.dirname(resolved), { recursive: true });
+  try {
+    await fs.access(resolved);
+    if (!force) {
+      throw new Error(`File already exists: ${resolved}`);
+    }
+  } catch {
+  }
+  const content = renderTemplate(template, values);
+  await fs.writeFile(resolved, content, "utf8");
+}
+
+// src/cli/commands/init.ts
+var CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from 'omi-neuron-web';
+
+export default defineNeuronConfig({
+  instance: {
+    name: '{{INSTANCE_NAME}}',
+    version: '0.1.0',
+    repoName: '{{REPO_NAME}}',
+  },
+  visualization: DEFAULT_VISUALIZATION_SETTINGS,
+  analysis: DEFAULT_ANALYSIS_SETTINGS,
+  nodeTypes: [],
+  domains: [],
+  relationshipTypes: [],
+  openai: {
+    apiKey: process.env.OPENAI_API_KEY ?? '',
+  },
+  database: {
+    mode: 'docker',
+    port: {{DB_PORT}},
+    user: 'neuron',
+    password: 'neuron_dev',
+    database: 'neuron_web',
+  },
+  api: {
+    basePath: '/api/neuron',
+    enableCors: false,
+  },
+  logging: {
+    level: 'info',
+    prettyPrint: true,
+  },
+});
+`;
+var ENV_TEMPLATE = `# omi-neuron-web environment variables
+OPENAI_API_KEY=
+DATABASE_URL=
+`;
+var DOCKER_TEMPLATE = `version: '3.8'
+
+services:
+  pg-{{REPO_NAME}}:
+    image: pgvector/pgvector:pg16
+    container_name: pg-{{REPO_NAME}}
+    restart: unless-stopped
+    environment:
+      POSTGRES_USER: neuron
+      POSTGRES_PASSWORD: neuron_dev
+      POSTGRES_DB: neuron_web
+    ports:
+      - "{{DB_PORT}}:5432"
+    volumes:
+      - {{REPO_NAME}}_neuron_data:/var/lib/postgresql/data
+    healthcheck:
+      test: ["CMD-SHELL", "pg_isready -U neuron -d neuron_web"]
+      interval: 10s
+      timeout: 5s
+      retries: 5
+
+volumes:
+  {{REPO_NAME}}_neuron_data:
+    name: {{REPO_NAME}}_neuron_data
+`;
+var API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from 'omi-neuron-web/api';
+import config from '../../../../neuron.config';
+
+const routes = createNeuronRoutes(config);
+
+export const GET = routes.health.GET;
+export const POST = routes.health.GET;
+`;
+var initCommand = new Command("init").description("Initialize omi-neuron-web in your project").option("--name <name>", "Instance name (default: directory name)").option("--port <port>", "PostgreSQL port (default: 5433)", "5433").option("--skip-docker", "Don't generate Docker files").option("--skip-api", "Don't generate API route files").option("--skip-config", "Don't generate neuron.config.ts").option("--app-dir <path>", "Path to Next.js app directory", "./app").option("--force", "Overwrite existing files").action(async (options) => {
+  const repoName = path2.basename(process.cwd());
+  const instanceName = options.name ?? repoName;
+  const port = Number(options.port ?? 5433);
+  if (!options.skipConfig) {
+    await writeTemplateFile(
+      path2.join(process.cwd(), "neuron.config.ts"),
+      CONFIG_TEMPLATE,
+      {
+        INSTANCE_NAME: instanceName,
+        REPO_NAME: repoName,
+        DB_PORT: String(port)
+      },
+      options.force
+    );
+    logger.success("Created neuron.config.ts");
+  }
+  if (!options.skipDocker) {
+    await writeTemplateFile(
+      path2.join(process.cwd(), "docker-compose.neuron.yml"),
+      DOCKER_TEMPLATE,
+      {
+        REPO_NAME: repoName,
+        DB_PORT: String(port)
+      },
+      options.force
+    );
+    logger.success("Created docker-compose.neuron.yml");
+  }
+  await writeTemplateFile(
+    path2.join(process.cwd(), ".env.neuron.local"),
+    ENV_TEMPLATE,
+    {},
+    options.force
+  );
+  logger.success("Created .env.neuron.local");
+  if (!options.skipApi) {
+    const apiPath = path2.join(process.cwd(), options.appDir, "api", "neuron", "[...path]");
+    await fs.mkdir(apiPath, { recursive: true });
+    await fs.writeFile(path2.join(apiPath, "route.ts"), API_ROUTE_TEMPLATE, "utf8");
+    logger.success("Created Next.js API route stub");
+  }
+  logger.info("Initialization complete.");
+});
+async function loadNeuronConfig() {
+  const configPath = path2.resolve("neuron.config.ts");
+  try {
+    await fs.access(configPath);
+  } catch {
+    return null;
+  }
+  try {
+    const module = await import(pathToFileURL(configPath).toString());
+    return module.default ?? module;
+  } catch (error) {
+    throw new Error(
+      `Unable to load neuron.config.ts. Consider transpiling or using a JS config. ${String(error)}`
+    );
+  }
+}
+async function resolveCliConfig(overrides) {
+  const repoName = overrides?.repoName ?? path2.basename(process.cwd());
+  let config = null;
+  try {
+    config = await loadNeuronConfig();
+  } catch {
+    config = null;
+  }
+  return {
+    repoName,
+    port: overrides?.port ?? config?.database?.port ?? (process.env.DB_PORT ? Number(process.env.DB_PORT) : 5433),
+    containerName: overrides?.containerName ?? config?.database?.containerName,
+    databaseUrl: overrides?.databaseUrl ?? config?.database?.url ?? process.env.DATABASE_URL,
+    databaseUser: overrides?.databaseUser ?? config?.database?.user ?? process.env.DB_USER,
+    databasePassword: overrides?.databasePassword ?? config?.database?.password ?? process.env.DB_PASSWORD,
+    databaseName: overrides?.databaseName ?? config?.database?.database ?? process.env.DB_NAME
+  };
+}
+async function confirmPrompt(message) {
+  const rl = createInterface({ input: stdin, output: stdout });
+  const answer = await rl.question(`${message} (y/N): `);
+  rl.close();
+  return answer.trim().toLowerCase() === "y";
+}
+
+// src/cli/utils/spinner.ts
+var Spinner = class {
+  constructor(message) {
+    this.message = message;
+  }
+  state = "stopped";
+  intervalId = null;
+  frames = ["-", "\\", "|", "/"];
+  frameIndex = 0;
+  start() {
+    if (this.state === "running") return;
+    this.state = "running";
+    this.intervalId = setInterval(() => {
+      const frame = this.frames[this.frameIndex % this.frames.length];
+      this.frameIndex += 1;
+      process.stdout.write(`\r${frame} ${this.message}`);
+    }, 120);
+  }
+  stop(success = true, finalMessage) {
+    if (this.intervalId) {
+      clearInterval(this.intervalId);
+    }
+    this.state = "stopped";
+    const symbol = success ? "\u2713" : "\u2717";
+    process.stdout.write(`\r${symbol} ${finalMessage ?? this.message}
+`);
+  }
+};
+
+// src/cli/commands/db.ts
+var buildConnectionString = (config) => {
+  if (config.databaseUrl) return config.databaseUrl;
+  const user = config.databaseUser ?? "neuron";
+  const password = config.databasePassword ?? "neuron_dev";
+  const database = config.databaseName ?? "neuron_web";
+  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;
+};
+var dbCommand = new Command("db").description("Database management commands").addCommand(
+  new Command("up").description("Start PostgreSQL container").option("--port <port>", "Override port").option("--force-recreate", "Force recreate container").option("--wait", "Wait for readiness", true).action(async (options) => {
+    const config = await resolveCliConfig({
+      port: options.port ? Number(options.port) : void 0
+    });
+    const docker = new DockerManager({
+      repoName: config.repoName,
+      port: config.port,
+      containerName: config.containerName,
+      user: config.databaseUser,
+      password: config.databasePassword,
+      database: config.databaseName
+    });
+    const spinner = new Spinner("Starting PostgreSQL container");
+    spinner.start();
+    await docker.start({
+      forceRecreate: options.forceRecreate,
+      waitForReady: options.wait
+    });
+    spinner.stop(true, "Database ready");
+    const connectionString = await docker.getConnectionString();
+    logger.info(`Connection string: ${connectionString}`);
+  })
+).addCommand(
+  new Command("down").description("Stop PostgreSQL container").option("--remove-volumes", "Remove volumes (destructive)").action(async (options) => {
+    const config = await resolveCliConfig();
+    const docker = new DockerManager({
+      repoName: config.repoName,
+      port: config.port,
+      containerName: config.containerName
+    });
+    await docker.stop({ removeVolumes: options.removeVolumes });
+    logger.success("Database container stopped");
+  })
+).addCommand(
+  new Command("migrate").description("Run migrations").option("--status", "Show status only").option("--rollback <count>", "Rollback N migrations").option("--to <version>", "Migrate to specific version").option("--dry-run", "Show SQL without executing").action(async (options) => {
+    const config = await resolveCliConfig();
+    const db = new Database({
+      connectionString: buildConnectionString(config)
+    });
+    const runner = new MigrationRunner(db);
+    if (options.status) {
+      const status = await runner.getStatus();
+      status.forEach((item) => {
+        logger.info(`${item.version} ${item.name} - ${item.status}`);
+      });
+      return;
+    }
+    if (options.dryRun) {
+      const sql = await runner.dryRun(options.rollback ? "down" : "up");
+      logger.info(sql.join("\n\n"));
+      return;
+    }
+    if (options.rollback) {
+      await runner.down({ count: Number(options.rollback) });
+      logger.success("Rollback complete");
+      return;
+    }
+    await runner.up({ to: options.to });
+    logger.success("Migrations complete");
+  })
+).addCommand(
+  new Command("status").description("Show database status").option("--json", "Output JSON").option("--verbose", "Include stats").action(async (options) => {
+    const config = await resolveCliConfig();
+    const docker = new DockerManager({
+      repoName: config.repoName,
+      port: config.port,
+      containerName: config.containerName
+    });
+    const health = await docker.healthCheck();
+    if (options.json) {
+      console.log(JSON.stringify(health, null, 2));
+      return;
+    }
+    logger.info(`Container running: ${health.containerRunning}`);
+    logger.info(`Database ready: ${health.databaseReady}`);
+    if (options.verbose) {
+      const stats = await docker.getStats();
+      logger.info(`Stats: ${JSON.stringify(stats)}`);
+    }
+  })
+).addCommand(
+  new Command("reset").description("Reset database schema").option("--confirm", "Skip confirmation prompt").action(async (options) => {
+    if (!options.confirm) {
+      const confirmed = await confirmPrompt("This will drop and reapply all migrations. Continue?");
+      if (!confirmed) return;
+    }
+    const config = await resolveCliConfig();
+    const db = new Database({
+      connectionString: buildConnectionString(config)
+    });
+    const runner = new MigrationRunner(db);
+    await runner.reset();
+    logger.success("Database reset complete");
+  })
+).addCommand(
+  new Command("seed").description("Seed database with sample data").option("--file <path>", "Custom seed file").option("--clear", "Clear before seeding").option("--count <n>", "Number of example nodes", "10").action(async (options) => {
+    const config = await resolveCliConfig();
+    const db = new Database({
+      connectionString: buildConnectionString(config)
+    });
+    if (options.clear) {
+      await db.execute("DELETE FROM edges");
+      await db.execute("DELETE FROM nodes");
+    }
+    const count = Number(options.count ?? 10);
+    for (let i = 0; i < count; i += 1) {
+      await db.execute(
+        "INSERT INTO nodes (slug, label, node_type, domain, metadata) VALUES ($1, $2, $3, $4, $5)",
+        [`seed-${i + 1}`, `Seed Node ${i + 1}`, "concept", "general", {}]
+      );
+    }
+    logger.success("Seed data inserted");
+  })
+);
+var buildConnectionString2 = (config) => {
+  if (config.databaseUrl) return config.databaseUrl;
+  const user = config.databaseUser ?? "neuron";
+  const password = config.databasePassword ?? "neuron_dev";
+  const database = config.databaseName ?? "neuron_web";
+  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;
+};
+async function buildPipeline() {
+  const config = await resolveCliConfig();
+  const db = new Database({ connectionString: buildConnectionString2(config) });
+  const events = new EventBus();
+  const embeddings = new EmbeddingsService(
+    {
+      openaiApiKey: process.env.OPENAI_API_KEY ?? "",
+      model: "text-embedding-3-small",
+      batchSize: 20,
+      rateLimit: 60,
+      cacheTTL: 86400,
+      maxRetries: 3
+    },
+    db
+  );
+  const clustering = new ClusteringEngine(db, embeddings);
+  const relationships = new RelationshipEngine(db, {
+    model: "gpt-4o-mini",
+    minConfidence: 0.7,
+    maxPerNode: 10,
+    similarityThreshold: 0.75,
+    includeExisting: false,
+    batchSize: 10,
+    rateLimit: 30
+  });
+  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);
+}
+var analyzeCommand = new Command("analyze").description("Analysis commands").addCommand(
+  new Command("embeddings").description("Generate embeddings").option("--node-ids <ids>", "Comma-separated node IDs").option("--force", "Regenerate existing").action(async (options) => {
+    const pipeline = await buildPipeline();
+    const nodeIds = options.nodeIds ? options.nodeIds.split(",") : void 0;
+    await pipeline.runEmbeddings({ nodeIds, forceRecompute: options.force });
+    logger.success("Embeddings complete");
+  })
+).addCommand(
+  new Command("cluster").description("Run clustering").option("--count <n>", "Number of clusters").option("--algorithm <alg>", "kmeans, dbscan, hierarchical", "kmeans").action(async (options) => {
+    const pipeline = await buildPipeline();
+    await pipeline.runClustering({
+      clusterCount: options.count ? Number(options.count) : void 0,
+      clusteringAlgorithm: options.algorithm
+    });
+    logger.success("Clustering complete");
+  })
+).addCommand(
+  new Command("relationships").description("Infer relationships").option("--threshold <n>", "Min confidence (0-1)", "0.7").option("--dry-run", "Show without saving").action(async (options) => {
+    const pipeline = await buildPipeline();
+    await pipeline.runRelationships({
+      relationshipThreshold: Number(options.threshold)
+    });
+    logger.success("Relationship inference complete");
+  })
+).addCommand(
+  new Command("full").description("Run full analysis pipeline").option("--force", "Force recompute all").action(async (options) => {
+    const pipeline = await buildPipeline();
+    await pipeline.runFull({ forceRecompute: options.force });
+    logger.success("Analysis pipeline complete");
+  })
+);
+var buildConnectionString3 = (config) => {
+  if (config.databaseUrl) return config.databaseUrl;
+  const user = config.databaseUser ?? "neuron";
+  const password = config.databasePassword ?? "neuron_dev";
+  const database = config.databaseName ?? "neuron_web";
+  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;
+};
+var validateCommand = new Command("validate").description("Validate configuration and setup").option("--fix", "Attempt to fix issues").option("--verbose", "Show detailed validation").action(async (options) => {
+  const config = await resolveCliConfig();
+  let hasError = false;
+  const configPath = path2.resolve("neuron.config.ts");
+  try {
+    await fs.access(configPath);
+    logger.success("neuron.config.ts exists");
+  } catch {
+    hasError = true;
+    logger.error("neuron.config.ts not found");
+  }
+  try {
+    const docker = new DockerManager({ repoName: config.repoName, port: config.port });
+    const health = await docker.healthCheck();
+    logger.info(`Docker container running: ${health.containerRunning}`);
+    logger.info(`Database ready: ${health.databaseReady}`);
+  } catch (error) {
+    hasError = true;
+    logger.error(`Docker check failed: ${String(error)}`);
+  }
+  try {
+    const db = new Database({ connectionString: buildConnectionString3(config) });
+    await db.connect();
+    logger.success("Database connection ok");
+    const runner = new MigrationRunner(db);
+    const pending = await runner.getPending();
+    if (pending.length > 0) {
+      logger.warn(`Pending migrations: ${pending.map((m) => m.version).join(", ")}`);
+    } else {
+      logger.success("Migrations up to date");
+    }
+  } catch (error) {
+    hasError = true;
+    logger.error(`Database check failed: ${String(error)}`);
+  }
+  if (!process.env.OPENAI_API_KEY) {
+    logger.warn("OPENAI_API_KEY not set");
+    if (options.fix) {
+      logger.info("Set OPENAI_API_KEY in your environment to enable analysis");
+    }
+  }
+  if (hasError) {
+    process.exitCode = 1;
+  }
+});
+var CONFIG_FILE = path2.resolve("neuron.config.ts");
+var serializeConfig = (config) => `import { defineNeuronConfig } from 'omi-neuron-web';
+
+export default defineNeuronConfig(${JSON.stringify(
+  config,
+  null,
+  2
+)});
+`;
+var getNestedValue = (obj, key) => {
+  return key.split(".").reduce((acc, part) => {
+    if (acc && typeof acc === "object" && part in acc) {
+      return acc[part];
+    }
+    return void 0;
+  }, obj);
+};
+var setNestedValue = (obj, key, value) => {
+  const parts = key.split(".");
+  let current = obj;
+  for (let i = 0; i < parts.length - 1; i += 1) {
+    const part = parts[i];
+    if (!current[part] || typeof current[part] !== "object") {
+      current[part] = {};
+    }
+    current = current[part];
+  }
+  current[parts[parts.length - 1]] = value;
+};
+var configCommand = new Command("config").description("Manage neuron.config.ts").addCommand(
+  new Command("get").argument("<key>", "Dot path key").action(async (key) => {
+    const config = await loadNeuronConfig();
+    if (!config) {
+      logger.error("neuron.config.ts not found");
+      return;
+    }
+    const value = getNestedValue(config, key);
+    console.log(JSON.stringify(value, null, 2));
+  })
+).addCommand(
+  new Command("set").argument("<key>", "Dot path key").argument("<value>", "Value (JSON)").action(async (key, value) => {
+    const config = await loadNeuronConfig();
+    if (!config) {
+      logger.error("neuron.config.ts not found");
+      return;
+    }
+    const parsed = JSON.parse(value);
+    const updated = { ...config };
+    setNestedValue(updated, key, parsed);
+    await fs.writeFile(CONFIG_FILE, serializeConfig(updated), "utf8");
+    logger.success(`Updated ${key}`);
+  })
+).addCommand(
+  new Command("list").action(async () => {
+    const config = await loadNeuronConfig();
+    if (!config) {
+      logger.error("neuron.config.ts not found");
+      return;
+    }
+    console.log(JSON.stringify(config, null, 2));
+  })
+).addCommand(
+  new Command("reset").option("--section <section>", "Section to reset").action(async (options) => {
+    const config = await loadNeuronConfig();
+    if (!config) {
+      logger.error("neuron.config.ts not found");
+      return;
+    }
+    const updated = { ...config };
+    if (options.section) {
+      delete updated[options.section];
+    } else {
+      for (const key of Object.keys(updated)) {
+        delete updated[key];
+      }
+    }
+    await fs.writeFile(CONFIG_FILE, serializeConfig(updated), "utf8");
+    logger.success("Config reset");
+  })
+);
+
+// src/cli/index.ts
+program.name("omi-neuron").description("CLI for omi-neuron-web library").version("0.1.0");
+program.addCommand(initCommand);
+program.addCommand(dbCommand);
+program.addCommand(analyzeCommand);
+program.addCommand(validateCommand);
+program.addCommand(configCommand);
+program.parse();
+//# sourceMappingURL=index.js.map
+//# sourceMappingURL=index.js.map

package/dist/cli/index.js.map

@@ -0,0 +1 @@
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chalk from 'chalk';\n\nexport const logger = {\n  info: (message: string) => {\n    console.log(chalk.cyan(`[omi-neuron] ${message}`));\n  },\n  success: (message: string) => {\n    console.log(chalk.green(`[omi-neuron] ${message}`));\n  },\n  warn: (message: string) => {\n    console.warn(chalk.yellow(`[omi-neuron] ${message}`));\n  },\n  error: (message: string) => {\n    console.error(chalk.red(`[omi-neuron] ${message}`));\n  },\n};\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\n\nexport const renderTemplate = (template: string, values: Record<string, string>): string => {\n  let output = template;\n  for (const [key, value] of Object.entries(values)) {\n    output = output.replace(new RegExp(`{{${key}}}`, 'g'), value);\n  }\n  return output;\n};\n\nexport async function writeTemplateFile(\n  filePath: string,\n  template: string,\n  values: Record<string, string>,\n  force = false\n): Promise<void> {\n  const resolved = path.resolve(filePath);\n  await fs.mkdir(path.dirname(resolved), { recursive: true });\n  try {\n    await fs.access(resolved);\n    if (!force) {\n      throw new Error(`File already exists: ${resolved}`);\n    }\n  } catch {\n    // File does not exist; continue.\n  }\n\n  const content = renderTemplate(template, values);\n  await fs.writeFile(resolved, content, 'utf8');\n}\n","import path from 'node:path';\nimport fs from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { logger } from '../utils/logger';\nimport { writeTemplateFile } from '../utils/templates';\n\nconst CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from 'omi-neuron-web';\n\nexport default defineNeuronConfig({\n  instance: {\n    name: '{{INSTANCE_NAME}}',\n    version: '0.1.0',\n    repoName: '{{REPO_NAME}}',\n  },\n  visualization: DEFAULT_VISUALIZATION_SETTINGS,\n  analysis: DEFAULT_ANALYSIS_SETTINGS,\n  nodeTypes: [],\n  domains: [],\n  relationshipTypes: [],\n  openai: {\n    apiKey: process.env.OPENAI_API_KEY ?? '',\n  },\n  database: {\n    mode: 'docker',\n    port: {{DB_PORT}},\n    user: 'neuron',\n    password: 'neuron_dev',\n    database: 'neuron_web',\n  },\n  api: {\n    basePath: '/api/neuron',\n    enableCors: false,\n  },\n  logging: {\n    level: 'info',\n    prettyPrint: true,\n  },\n});\n`;\n\nconst ENV_TEMPLATE = `# omi-neuron-web environment variables\nOPENAI_API_KEY=\nDATABASE_URL=\n`;\n\nconst DOCKER_TEMPLATE = `version: '3.8'\n\nservices:\n  pg-{{REPO_NAME}}:\n    image: pgvector/pgvector:pg16\n    container_name: pg-{{REPO_NAME}}\n    restart: unless-stopped\n    environment:\n      POSTGRES_USER: neuron\n      POSTGRES_PASSWORD: neuron_dev\n      POSTGRES_DB: neuron_web\n    ports:\n      - \"{{DB_PORT}}:5432\"\n    volumes:\n      - {{REPO_NAME}}_neuron_data:/var/lib/postgresql/data\n    healthcheck:\n      test: [\"CMD-SHELL\", \"pg_isready -U neuron -d neuron_web\"]\n      interval: 10s\n      timeout: 5s\n      retries: 5\n\nvolumes:\n  {{REPO_NAME}}_neuron_data:\n    name: {{REPO_NAME}}_neuron_data\n`;\n\nconst API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from 'omi-neuron-web/api';\nimport config from '../../../../neuron.config';\n\nconst routes = createNeuronRoutes(config);\n\nexport const GET = routes.health.GET;\nexport const POST = routes.health.GET;\n`;\n\nexport const initCommand = new Command('init')\n  .description('Initialize omi-neuron-web in your project')\n  .option('--name <name>', 'Instance name (default: directory name)')\n  .option('--port <port>', 'PostgreSQL port (default: 5433)', '5433')\n  .option('--skip-docker', \"Don't generate Docker files\")\n  .option('--skip-api', \"Don't generate API route files\")\n  .option('--skip-config', \"Don't generate neuron.config.ts\")\n  .option('--app-dir <path>', 'Path to Next.js app directory', './app')\n  .option('--force', 'Overwrite existing files')\n  .action(async (options) => {\n    const repoName = path.basename(process.cwd());\n    const instanceName = options.name ?? repoName;\n    const port = Number(options.port ?? 5433);\n\n    if (!options.skipConfig) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'neuron.config.ts'),\n        CONFIG_TEMPLATE,\n        {\n          INSTANCE_NAME: instanceName,\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created neuron.config.ts');\n    }\n\n    if (!options.skipDocker) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'docker-compose.neuron.yml'),\n        DOCKER_TEMPLATE,\n        {\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created docker-compose.neuron.yml');\n    }\n\n    await writeTemplateFile(\n      path.join(process.cwd(), '.env.neuron.local'),\n      ENV_TEMPLATE,\n      {},\n      options.force\n    );\n    logger.success('Created .env.neuron.local');\n\n    if (!options.skipApi) {\n      const apiPath = path.join(process.cwd(), options.appDir, 'api', 'neuron', '[...path]');\n      await fs.mkdir(apiPath, { recursive: true });\n      await fs.writeFile(path.join(apiPath, 'route.ts'), API_ROUTE_TEMPLATE, 'utf8');\n      logger.success('Created Next.js API route stub');\n    }\n\n    logger.info('Initialization complete.');\n  });\n","import path from 'node:path';\nimport { pathToFileURL } from 'node:url';\nimport fs from 'node:fs/promises';\nimport type { NeuronConfig } from '../../core/types/settings';\n\nexport interface CliConfig {\n  repoName: string;\n  port: number;\n  containerName?: string;\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n}\n\nexport async function loadNeuronConfig(): Promise<NeuronConfig | null> {\n  const configPath = path.resolve('neuron.config.ts');\n  try {\n    await fs.access(configPath);\n  } catch {\n    return null;\n  }\n\n  try {\n    const module = await import(pathToFileURL(configPath).toString());\n    return module.default ?? module;\n  } catch (error) {\n    throw new Error(\n      `Unable to load neuron.config.ts. Consider transpiling or using a JS config. ${String(error)}`\n    );\n  }\n}\n\nexport async function resolveCliConfig(overrides?: Partial<CliConfig>): Promise<CliConfig> {\n  const repoName = overrides?.repoName ?? path.basename(process.cwd());\n  let config: NeuronConfig | null = null;\n\n  try {\n    config = await loadNeuronConfig();\n  } catch {\n    config = null;\n  }\n\n  return {\n    repoName,\n    port:\n      overrides?.port ??\n      config?.database?.port ??\n      (process.env.DB_PORT ? Number(process.env.DB_PORT) : 5433),\n    containerName: overrides?.containerName ?? config?.database?.containerName,\n    databaseUrl: overrides?.databaseUrl ?? config?.database?.url ?? process.env.DATABASE_URL,\n    databaseUser: overrides?.databaseUser ?? config?.database?.user ?? process.env.DB_USER,\n    databasePassword:\n      overrides?.databasePassword ?? config?.database?.password ?? process.env.DB_PASSWORD,\n    databaseName: overrides?.databaseName ?? config?.database?.database ?? process.env.DB_NAME,\n  };\n}\n","import { createInterface } from 'node:readline/promises';\nimport { stdin as input, stdout as output } from 'node:process';\n\nexport async function confirmPrompt(message: string): Promise<boolean> {\n  const rl = createInterface({ input, output });\n  const answer = await rl.question(`${message} (y/N): `);\n  rl.close();\n  return answer.trim().toLowerCase() === 'y';\n}\n","type SpinnerState = 'running' | 'stopped';\n\nexport class Spinner {\n  private state: SpinnerState = 'stopped';\n  private intervalId: NodeJS.Timeout | null = null;\n  private frames = ['-', '\\\\', '|', '/'];\n  private frameIndex = 0;\n\n  constructor(private message: string) {}\n\n  start(): void {\n    if (this.state === 'running') return;\n    this.state = 'running';\n    this.intervalId = setInterval(() => {\n      const frame = this.frames[this.frameIndex % this.frames.length];\n      this.frameIndex += 1;\n      process.stdout.write(`\\r${frame} ${this.message}`);\n    }, 120);\n  }\n\n  stop(success = true, finalMessage?: string): void {\n    if (this.intervalId) {\n      clearInterval(this.intervalId);\n    }\n    this.state = 'stopped';\n    const symbol = success ? '✓' : '✗';\n    process.stdout.write(`\\r${symbol} ${finalMessage ?? this.message}\\n`);\n  }\n}\n","import { Command } from 'commander';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { confirmPrompt } from '../utils/prompts';\nimport { Spinner } from '../utils/spinner';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const dbCommand = new Command('db')\n  .description('Database management commands')\n  .addCommand(\n    new Command('up')\n      .description('Start PostgreSQL container')\n      .option('--port <port>', 'Override port')\n      .option('--force-recreate', 'Force recreate container')\n      .option('--wait', 'Wait for readiness', true)\n      .action(async (options) => {\n        const config = await resolveCliConfig({\n          port: options.port ? Number(options.port) : undefined,\n        });\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n          user: config.databaseUser,\n          password: config.databasePassword,\n          database: config.databaseName,\n        });\n        const spinner = new Spinner('Starting PostgreSQL container');\n        spinner.start();\n        await docker.start({\n          forceRecreate: options.forceRecreate,\n          waitForReady: options.wait,\n        });\n        spinner.stop(true, 'Database ready');\n        const connectionString = await docker.getConnectionString();\n        logger.info(`Connection string: ${connectionString}`);\n      })\n  )\n  .addCommand(\n    new Command('down')\n      .description('Stop PostgreSQL container')\n      .option('--remove-volumes', 'Remove volumes (destructive)')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        await docker.stop({ removeVolumes: options.removeVolumes });\n        logger.success('Database container stopped');\n      })\n  )\n  .addCommand(\n    new Command('migrate')\n      .description('Run migrations')\n      .option('--status', 'Show status only')\n      .option('--rollback <count>', 'Rollback N migrations')\n      .option('--to <version>', 'Migrate to specific version')\n      .option('--dry-run', 'Show SQL without executing')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n\n        if (options.status) {\n          const status = await runner.getStatus();\n          status.forEach((item) => {\n            logger.info(`${item.version} ${item.name} - ${item.status}`);\n          });\n          return;\n        }\n\n        if (options.dryRun) {\n          const sql = await runner.dryRun(options.rollback ? 'down' : 'up');\n          logger.info(sql.join('\\n\\n'));\n          return;\n        }\n\n        if (options.rollback) {\n          await runner.down({ count: Number(options.rollback) });\n          logger.success('Rollback complete');\n          return;\n        }\n\n        await runner.up({ to: options.to });\n        logger.success('Migrations complete');\n      })\n  )\n  .addCommand(\n    new Command('status')\n      .description('Show database status')\n      .option('--json', 'Output JSON')\n      .option('--verbose', 'Include stats')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        const health = await docker.healthCheck();\n\n        if (options.json) {\n          console.log(JSON.stringify(health, null, 2));\n          return;\n        }\n\n        logger.info(`Container running: ${health.containerRunning}`);\n        logger.info(`Database ready: ${health.databaseReady}`);\n        if (options.verbose) {\n          const stats = await docker.getStats();\n          logger.info(`Stats: ${JSON.stringify(stats)}`);\n        }\n      })\n  )\n  .addCommand(\n    new Command('reset')\n      .description('Reset database schema')\n      .option('--confirm', 'Skip confirmation prompt')\n      .action(async (options) => {\n        if (!options.confirm) {\n          const confirmed = await confirmPrompt('This will drop and reapply all migrations. Continue?');\n          if (!confirmed) return;\n        }\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n        await runner.reset();\n        logger.success('Database reset complete');\n      })\n  )\n  .addCommand(\n    new Command('seed')\n      .description('Seed database with sample data')\n      .option('--file <path>', 'Custom seed file')\n      .option('--clear', 'Clear before seeding')\n      .option('--count <n>', 'Number of example nodes', '10')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        if (options.clear) {\n          await db.execute('DELETE FROM edges');\n          await db.execute('DELETE FROM nodes');\n        }\n        const count = Number(options.count ?? 10);\n        for (let i = 0; i < count; i += 1) {\n          await db.execute(\n            'INSERT INTO nodes (slug, label, node_type, domain, metadata) VALUES ($1, $2, $3, $4, $5)',\n            [`seed-${i + 1}`, `Seed Node ${i + 1}`, 'concept', 'general', {}]\n          );\n        }\n        logger.success('Seed data inserted');\n      })\n  );\n","import { Command } from 'commander';\nimport { Database } from '../../storage/database';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { EventBus } from '../../core/events/event-bus';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ClusteringEngine } from '../../core/analysis/clustering-engine';\nimport { RelationshipEngine } from '../../core/analysis/relationship-engine';\nimport { AnalysisPipeline } from '../../core/analysis/pipeline';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nasync function buildPipeline(): Promise<AnalysisPipeline> {\n  const config = await resolveCliConfig();\n  const db = new Database({ connectionString: buildConnectionString(config) });\n  const events = new EventBus();\n\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: process.env.OPENAI_API_KEY ?? '',\n      model: 'text-embedding-3-small',\n      batchSize: 20,\n      rateLimit: 60,\n      cacheTTL: 86400,\n      maxRetries: 3,\n    },\n    db\n  );\n\n  const clustering = new ClusteringEngine(db, embeddings);\n  const relationships = new RelationshipEngine(db, {\n    model: 'gpt-4o-mini',\n    minConfidence: 0.7,\n    maxPerNode: 10,\n    similarityThreshold: 0.75,\n    includeExisting: false,\n    batchSize: 10,\n    rateLimit: 30,\n  });\n\n  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);\n}\n\nexport const analyzeCommand = new Command('analyze')\n  .description('Analysis commands')\n  .addCommand(\n    new Command('embeddings')\n      .description('Generate embeddings')\n      .option('--node-ids <ids>', 'Comma-separated node IDs')\n      .option('--force', 'Regenerate existing')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        const nodeIds = options.nodeIds ? options.nodeIds.split(',') : undefined;\n        await pipeline.runEmbeddings({ nodeIds, forceRecompute: options.force });\n        logger.success('Embeddings complete');\n      })\n  )\n  .addCommand(\n    new Command('cluster')\n      .description('Run clustering')\n      .option('--count <n>', 'Number of clusters')\n      .option('--algorithm <alg>', 'kmeans, dbscan, hierarchical', 'kmeans')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runClustering({\n          clusterCount: options.count ? Number(options.count) : undefined,\n          clusteringAlgorithm: options.algorithm,\n        });\n        logger.success('Clustering complete');\n      })\n  )\n  .addCommand(\n    new Command('relationships')\n      .description('Infer relationships')\n      .option('--threshold <n>', 'Min confidence (0-1)', '0.7')\n      .option('--dry-run', 'Show without saving')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runRelationships({\n          relationshipThreshold: Number(options.threshold),\n        });\n        logger.success('Relationship inference complete');\n      })\n  )\n  .addCommand(\n    new Command('full')\n      .description('Run full analysis pipeline')\n      .option('--force', 'Force recompute all')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runFull({ forceRecompute: options.force });\n        logger.success('Analysis pipeline complete');\n      })\n  );\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const validateCommand = new Command('validate')\n  .description('Validate configuration and setup')\n  .option('--fix', 'Attempt to fix issues')\n  .option('--verbose', 'Show detailed validation')\n  .action(async (options) => {\n    const config = await resolveCliConfig();\n    let hasError = false;\n\n    const configPath = path.resolve('neuron.config.ts');\n    try {\n      await fs.access(configPath);\n      logger.success('neuron.config.ts exists');\n    } catch {\n      hasError = true;\n      logger.error('neuron.config.ts not found');\n    }\n\n    try {\n      const docker = new DockerManager({ repoName: config.repoName, port: config.port });\n      const health = await docker.healthCheck();\n      logger.info(`Docker container running: ${health.containerRunning}`);\n      logger.info(`Database ready: ${health.databaseReady}`);\n    } catch (error) {\n      hasError = true;\n      logger.error(`Docker check failed: ${String(error)}`);\n    }\n\n    try {\n      const db = new Database({ connectionString: buildConnectionString(config) });\n      await db.connect();\n      logger.success('Database connection ok');\n      const runner = new MigrationRunner(db);\n      const pending = await runner.getPending();\n      if (pending.length > 0) {\n        logger.warn(`Pending migrations: ${pending.map((m) => m.version).join(', ')}`);\n      } else {\n        logger.success('Migrations up to date');\n      }\n    } catch (error) {\n      hasError = true;\n      logger.error(`Database check failed: ${String(error)}`);\n    }\n\n    if (!process.env.OPENAI_API_KEY) {\n      logger.warn('OPENAI_API_KEY not set');\n      if (options.fix) {\n        logger.info('Set OPENAI_API_KEY in your environment to enable analysis');\n      }\n    }\n\n    if (hasError) {\n      process.exitCode = 1;\n    }\n  });\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { loadNeuronConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst CONFIG_FILE = path.resolve('neuron.config.ts');\n\nconst serializeConfig = (config: unknown): string => `import { defineNeuronConfig } from 'omi-neuron-web';\\n\\nexport default defineNeuronConfig(${JSON.stringify(\n  config,\n  null,\n  2\n)});\\n`;\n\nconst getNestedValue = (obj: Record<string, unknown>, key: string): unknown => {\n  return key.split('.').reduce((acc, part) => {\n    if (acc && typeof acc === 'object' && part in acc) {\n      return (acc as Record<string, unknown>)[part];\n    }\n    return undefined;\n  }, obj as unknown);\n};\n\nconst setNestedValue = (obj: Record<string, unknown>, key: string, value: unknown): void => {\n  const parts = key.split('.');\n  let current = obj;\n  for (let i = 0; i < parts.length - 1; i += 1) {\n    const part = parts[i];\n    if (!current[part] || typeof current[part] !== 'object') {\n      current[part] = {};\n    }\n    current = current[part] as Record<string, unknown>;\n  }\n  current[parts[parts.length - 1]] = value;\n};\n\nexport const configCommand = new Command('config')\n  .description('Manage neuron.config.ts')\n  .addCommand(\n    new Command('get')\n      .argument('<key>', 'Dot path key')\n      .action(async (key) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const value = getNestedValue(config as unknown as Record<string, unknown>, key);\n        console.log(JSON.stringify(value, null, 2));\n      })\n  )\n  .addCommand(\n    new Command('set')\n      .argument('<key>', 'Dot path key')\n      .argument('<value>', 'Value (JSON)')\n      .action(async (key, value) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const parsed = JSON.parse(value);\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        setNestedValue(updated, key, parsed);\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success(`Updated ${key}`);\n      })\n  )\n  .addCommand(\n    new Command('list').action(async () => {\n      const config = await loadNeuronConfig();\n      if (!config) {\n        logger.error('neuron.config.ts not found');\n        return;\n      }\n      console.log(JSON.stringify(config, null, 2));\n    })\n  )\n  .addCommand(\n    new Command('reset')\n      .option('--section <section>', 'Section to reset')\n      .action(async (options) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        if (options.section) {\n          delete updated[options.section];\n        } else {\n          for (const key of Object.keys(updated)) {\n            delete updated[key];\n          }\n        }\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success('Config reset');\n      })\n  );\n","#!/usr/bin/env node\nimport { program } from 'commander';\nimport { initCommand } from './commands/init';\nimport { dbCommand } from './commands/db';\nimport { analyzeCommand } from './commands/analyze';\nimport { validateCommand } from './commands/validate';\nimport { configCommand } from './commands/config';\n\nprogram\n  .name('omi-neuron')\n  .description('CLI for omi-neuron-web library')\n  .version('0.1.0');\n\nprogram.addCommand(initCommand);\nprogram.addCommand(dbCommand);\nprogram.addCommand(analyzeCommand);\nprogram.addCommand(validateCommand);\nprogram.addCommand(configCommand);\n\nprogram.parse();\n"]}