@omiron33/omi-neuron-web 0.1.0 → 0.1.2

package/dist/cli/index.cjs.map

@@ -1 +1 @@
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chalk from 'chalk';\n\nexport const logger = {\n  info: (message: string) => {\n    console.log(chalk.cyan(`[omi-neuron] ${message}`));\n  },\n  success: (message: string) => {\n    console.log(chalk.green(`[omi-neuron] ${message}`));\n  },\n  warn: (message: string) => {\n    console.warn(chalk.yellow(`[omi-neuron] ${message}`));\n  },\n  error: (message: string) => {\n    console.error(chalk.red(`[omi-neuron] ${message}`));\n  },\n};\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\n\nexport const renderTemplate = (template: string, values: Record<string, string>): string => {\n  let output = template;\n  for (const [key, value] of Object.entries(values)) {\n    output = output.replace(new RegExp(`{{${key}}}`, 'g'), value);\n  }\n  return output;\n};\n\nexport async function writeTemplateFile(\n  filePath: string,\n  template: string,\n  values: Record<string, string>,\n  force = false\n): Promise<void> {\n  const resolved = path.resolve(filePath);\n  await fs.mkdir(path.dirname(resolved), { recursive: true });\n  try {\n    await fs.access(resolved);\n    if (!force) {\n      throw new Error(`File already exists: ${resolved}`);\n    }\n  } catch {\n    // File does not exist; continue.\n  }\n\n  const content = renderTemplate(template, values);\n  await fs.writeFile(resolved, content, 'utf8');\n}\n","import path from 'node:path';\nimport fs from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { logger } from '../utils/logger';\nimport { writeTemplateFile } from '../utils/templates';\n\nconst CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from 'omi-neuron-web';\n\nexport default defineNeuronConfig({\n  instance: {\n    name: '{{INSTANCE_NAME}}',\n    version: '0.1.0',\n    repoName: '{{REPO_NAME}}',\n  },\n  visualization: DEFAULT_VISUALIZATION_SETTINGS,\n  analysis: DEFAULT_ANALYSIS_SETTINGS,\n  nodeTypes: [],\n  domains: [],\n  relationshipTypes: [],\n  openai: {\n    apiKey: process.env.OPENAI_API_KEY ?? '',\n  },\n  database: {\n    mode: 'docker',\n    port: {{DB_PORT}},\n    user: 'neuron',\n    password: 'neuron_dev',\n    database: 'neuron_web',\n  },\n  api: {\n    basePath: '/api/neuron',\n    enableCors: false,\n  },\n  logging: {\n    level: 'info',\n    prettyPrint: true,\n  },\n});\n`;\n\nconst ENV_TEMPLATE = `# omi-neuron-web environment variables\nOPENAI_API_KEY=\nDATABASE_URL=\n`;\n\nconst DOCKER_TEMPLATE = `version: '3.8'\n\nservices:\n  pg-{{REPO_NAME}}:\n    image: pgvector/pgvector:pg16\n    container_name: pg-{{REPO_NAME}}\n    restart: unless-stopped\n    environment:\n      POSTGRES_USER: neuron\n      POSTGRES_PASSWORD: neuron_dev\n      POSTGRES_DB: neuron_web\n    ports:\n      - \"{{DB_PORT}}:5432\"\n    volumes:\n      - {{REPO_NAME}}_neuron_data:/var/lib/postgresql/data\n    healthcheck:\n      test: [\"CMD-SHELL\", \"pg_isready -U neuron -d neuron_web\"]\n      interval: 10s\n      timeout: 5s\n      retries: 5\n\nvolumes:\n  {{REPO_NAME}}_neuron_data:\n    name: {{REPO_NAME}}_neuron_data\n`;\n\nconst API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from 'omi-neuron-web/api';\nimport config from '../../../../neuron.config';\n\nconst routes = createNeuronRoutes(config);\n\nexport const GET = routes.health.GET;\nexport const POST = routes.health.GET;\n`;\n\nexport const initCommand = new Command('init')\n  .description('Initialize omi-neuron-web in your project')\n  .option('--name <name>', 'Instance name (default: directory name)')\n  .option('--port <port>', 'PostgreSQL port (default: 5433)', '5433')\n  .option('--skip-docker', \"Don't generate Docker files\")\n  .option('--skip-api', \"Don't generate API route files\")\n  .option('--skip-config', \"Don't generate neuron.config.ts\")\n  .option('--app-dir <path>', 'Path to Next.js app directory', './app')\n  .option('--force', 'Overwrite existing files')\n  .action(async (options) => {\n    const repoName = path.basename(process.cwd());\n    const instanceName = options.name ?? repoName;\n    const port = Number(options.port ?? 5433);\n\n    if (!options.skipConfig) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'neuron.config.ts'),\n        CONFIG_TEMPLATE,\n        {\n          INSTANCE_NAME: instanceName,\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created neuron.config.ts');\n    }\n\n    if (!options.skipDocker) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'docker-compose.neuron.yml'),\n        DOCKER_TEMPLATE,\n        {\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created docker-compose.neuron.yml');\n    }\n\n    await writeTemplateFile(\n      path.join(process.cwd(), '.env.neuron.local'),\n      ENV_TEMPLATE,\n      {},\n      options.force\n    );\n    logger.success('Created .env.neuron.local');\n\n    if (!options.skipApi) {\n      const apiPath = path.join(process.cwd(), options.appDir, 'api', 'neuron', '[...path]');\n      await fs.mkdir(apiPath, { recursive: true });\n      await fs.writeFile(path.join(apiPath, 'route.ts'), API_ROUTE_TEMPLATE, 'utf8');\n      logger.success('Created Next.js API route stub');\n    }\n\n    logger.info('Initialization complete.');\n  });\n","import path from 'node:path';\nimport { pathToFileURL } from 'node:url';\nimport fs from 'node:fs/promises';\nimport type { NeuronConfig } from '../../core/types/settings';\n\nexport interface CliConfig {\n  repoName: string;\n  port: number;\n  containerName?: string;\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n}\n\nexport async function loadNeuronConfig(): Promise<NeuronConfig | null> {\n  const configPath = path.resolve('neuron.config.ts');\n  try {\n    await fs.access(configPath);\n  } catch {\n    return null;\n  }\n\n  try {\n    const module = await import(pathToFileURL(configPath).toString());\n    return module.default ?? module;\n  } catch (error) {\n    throw new Error(\n      `Unable to load neuron.config.ts. Consider transpiling or using a JS config. ${String(error)}`\n    );\n  }\n}\n\nexport async function resolveCliConfig(overrides?: Partial<CliConfig>): Promise<CliConfig> {\n  const repoName = overrides?.repoName ?? path.basename(process.cwd());\n  let config: NeuronConfig | null = null;\n\n  try {\n    config = await loadNeuronConfig();\n  } catch {\n    config = null;\n  }\n\n  return {\n    repoName,\n    port:\n      overrides?.port ??\n      config?.database?.port ??\n      (process.env.DB_PORT ? Number(process.env.DB_PORT) : 5433),\n    containerName: overrides?.containerName ?? config?.database?.containerName,\n    databaseUrl: overrides?.databaseUrl ?? config?.database?.url ?? process.env.DATABASE_URL,\n    databaseUser: overrides?.databaseUser ?? config?.database?.user ?? process.env.DB_USER,\n    databasePassword:\n      overrides?.databasePassword ?? config?.database?.password ?? process.env.DB_PASSWORD,\n    databaseName: overrides?.databaseName ?? config?.database?.database ?? process.env.DB_NAME,\n  };\n}\n","import { createInterface } from 'node:readline/promises';\nimport { stdin as input, stdout as output } from 'node:process';\n\nexport async function confirmPrompt(message: string): Promise<boolean> {\n  const rl = createInterface({ input, output });\n  const answer = await rl.question(`${message} (y/N): `);\n  rl.close();\n  return answer.trim().toLowerCase() === 'y';\n}\n","type SpinnerState = 'running' | 'stopped';\n\nexport class Spinner {\n  private state: SpinnerState = 'stopped';\n  private intervalId: NodeJS.Timeout | null = null;\n  private frames = ['-', '\\\\', '|', '/'];\n  private frameIndex = 0;\n\n  constructor(private message: string) {}\n\n  start(): void {\n    if (this.state === 'running') return;\n    this.state = 'running';\n    this.intervalId = setInterval(() => {\n      const frame = this.frames[this.frameIndex % this.frames.length];\n      this.frameIndex += 1;\n      process.stdout.write(`\\r${frame} ${this.message}`);\n    }, 120);\n  }\n\n  stop(success = true, finalMessage?: string): void {\n    if (this.intervalId) {\n      clearInterval(this.intervalId);\n    }\n    this.state = 'stopped';\n    const symbol = success ? '✓' : '✗';\n    process.stdout.write(`\\r${symbol} ${finalMessage ?? this.message}\\n`);\n  }\n}\n","import { Command } from 'commander';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { confirmPrompt } from '../utils/prompts';\nimport { Spinner } from '../utils/spinner';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const dbCommand = new Command('db')\n  .description('Database management commands')\n  .addCommand(\n    new Command('up')\n      .description('Start PostgreSQL container')\n      .option('--port <port>', 'Override port')\n      .option('--force-recreate', 'Force recreate container')\n      .option('--wait', 'Wait for readiness', true)\n      .action(async (options) => {\n        const config = await resolveCliConfig({\n          port: options.port ? Number(options.port) : undefined,\n        });\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n          user: config.databaseUser,\n          password: config.databasePassword,\n          database: config.databaseName,\n        });\n        const spinner = new Spinner('Starting PostgreSQL container');\n        spinner.start();\n        await docker.start({\n          forceRecreate: options.forceRecreate,\n          waitForReady: options.wait,\n        });\n        spinner.stop(true, 'Database ready');\n        const connectionString = await docker.getConnectionString();\n        logger.info(`Connection string: ${connectionString}`);\n      })\n  )\n  .addCommand(\n    new Command('down')\n      .description('Stop PostgreSQL container')\n      .option('--remove-volumes', 'Remove volumes (destructive)')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        await docker.stop({ removeVolumes: options.removeVolumes });\n        logger.success('Database container stopped');\n      })\n  )\n  .addCommand(\n    new Command('migrate')\n      .description('Run migrations')\n      .option('--status', 'Show status only')\n      .option('--rollback <count>', 'Rollback N migrations')\n      .option('--to <version>', 'Migrate to specific version')\n      .option('--dry-run', 'Show SQL without executing')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n\n        if (options.status) {\n          const status = await runner.getStatus();\n          status.forEach((item) => {\n            logger.info(`${item.version} ${item.name} - ${item.status}`);\n          });\n          return;\n        }\n\n        if (options.dryRun) {\n          const sql = await runner.dryRun(options.rollback ? 'down' : 'up');\n          logger.info(sql.join('\\n\\n'));\n          return;\n        }\n\n        if (options.rollback) {\n          await runner.down({ count: Number(options.rollback) });\n          logger.success('Rollback complete');\n          return;\n        }\n\n        await runner.up({ to: options.to });\n        logger.success('Migrations complete');\n      })\n  )\n  .addCommand(\n    new Command('status')\n      .description('Show database status')\n      .option('--json', 'Output JSON')\n      .option('--verbose', 'Include stats')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        const health = await docker.healthCheck();\n\n        if (options.json) {\n          console.log(JSON.stringify(health, null, 2));\n          return;\n        }\n\n        logger.info(`Container running: ${health.containerRunning}`);\n        logger.info(`Database ready: ${health.databaseReady}`);\n        if (options.verbose) {\n          const stats = await docker.getStats();\n          logger.info(`Stats: ${JSON.stringify(stats)}`);\n        }\n      })\n  )\n  .addCommand(\n    new Command('reset')\n      .description('Reset database schema')\n      .option('--confirm', 'Skip confirmation prompt')\n      .action(async (options) => {\n        if (!options.confirm) {\n          const confirmed = await confirmPrompt('This will drop and reapply all migrations. Continue?');\n          if (!confirmed) return;\n        }\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n        await runner.reset();\n        logger.success('Database reset complete');\n      })\n  )\n  .addCommand(\n    new Command('seed')\n      .description('Seed database with sample data')\n      .option('--file <path>', 'Custom seed file')\n      .option('--clear', 'Clear before seeding')\n      .option('--count <n>', 'Number of example nodes', '10')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        if (options.clear) {\n          await db.execute('DELETE FROM edges');\n          await db.execute('DELETE FROM nodes');\n        }\n        const count = Number(options.count ?? 10);\n        for (let i = 0; i < count; i += 1) {\n          await db.execute(\n            'INSERT INTO nodes (slug, label, node_type, domain, metadata) VALUES ($1, $2, $3, $4, $5)',\n            [`seed-${i + 1}`, `Seed Node ${i + 1}`, 'concept', 'general', {}]\n          );\n        }\n        logger.success('Seed data inserted');\n      })\n  );\n","import { Command } from 'commander';\nimport { Database } from '../../storage/database';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { EventBus } from '../../core/events/event-bus';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ClusteringEngine } from '../../core/analysis/clustering-engine';\nimport { RelationshipEngine } from '../../core/analysis/relationship-engine';\nimport { AnalysisPipeline } from '../../core/analysis/pipeline';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nasync function buildPipeline(): Promise<AnalysisPipeline> {\n  const config = await resolveCliConfig();\n  const db = new Database({ connectionString: buildConnectionString(config) });\n  const events = new EventBus();\n\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: process.env.OPENAI_API_KEY ?? '',\n      model: 'text-embedding-3-small',\n      batchSize: 20,\n      rateLimit: 60,\n      cacheTTL: 86400,\n      maxRetries: 3,\n    },\n    db\n  );\n\n  const clustering = new ClusteringEngine(db, embeddings);\n  const relationships = new RelationshipEngine(db, {\n    model: 'gpt-4o-mini',\n    minConfidence: 0.7,\n    maxPerNode: 10,\n    similarityThreshold: 0.75,\n    includeExisting: false,\n    batchSize: 10,\n    rateLimit: 30,\n  });\n\n  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);\n}\n\nexport const analyzeCommand = new Command('analyze')\n  .description('Analysis commands')\n  .addCommand(\n    new Command('embeddings')\n      .description('Generate embeddings')\n      .option('--node-ids <ids>', 'Comma-separated node IDs')\n      .option('--force', 'Regenerate existing')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        const nodeIds = options.nodeIds ? options.nodeIds.split(',') : undefined;\n        await pipeline.runEmbeddings({ nodeIds, forceRecompute: options.force });\n        logger.success('Embeddings complete');\n      })\n  )\n  .addCommand(\n    new Command('cluster')\n      .description('Run clustering')\n      .option('--count <n>', 'Number of clusters')\n      .option('--algorithm <alg>', 'kmeans, dbscan, hierarchical', 'kmeans')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runClustering({\n          clusterCount: options.count ? Number(options.count) : undefined,\n          clusteringAlgorithm: options.algorithm,\n        });\n        logger.success('Clustering complete');\n      })\n  )\n  .addCommand(\n    new Command('relationships')\n      .description('Infer relationships')\n      .option('--threshold <n>', 'Min confidence (0-1)', '0.7')\n      .option('--dry-run', 'Show without saving')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runRelationships({\n          relationshipThreshold: Number(options.threshold),\n        });\n        logger.success('Relationship inference complete');\n      })\n  )\n  .addCommand(\n    new Command('full')\n      .description('Run full analysis pipeline')\n      .option('--force', 'Force recompute all')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runFull({ forceRecompute: options.force });\n        logger.success('Analysis pipeline complete');\n      })\n  );\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const validateCommand = new Command('validate')\n  .description('Validate configuration and setup')\n  .option('--fix', 'Attempt to fix issues')\n  .option('--verbose', 'Show detailed validation')\n  .action(async (options) => {\n    const config = await resolveCliConfig();\n    let hasError = false;\n\n    const configPath = path.resolve('neuron.config.ts');\n    try {\n      await fs.access(configPath);\n      logger.success('neuron.config.ts exists');\n    } catch {\n      hasError = true;\n      logger.error('neuron.config.ts not found');\n    }\n\n    try {\n      const docker = new DockerManager({ repoName: config.repoName, port: config.port });\n      const health = await docker.healthCheck();\n      logger.info(`Docker container running: ${health.containerRunning}`);\n      logger.info(`Database ready: ${health.databaseReady}`);\n    } catch (error) {\n      hasError = true;\n      logger.error(`Docker check failed: ${String(error)}`);\n    }\n\n    try {\n      const db = new Database({ connectionString: buildConnectionString(config) });\n      await db.connect();\n      logger.success('Database connection ok');\n      const runner = new MigrationRunner(db);\n      const pending = await runner.getPending();\n      if (pending.length > 0) {\n        logger.warn(`Pending migrations: ${pending.map((m) => m.version).join(', ')}`);\n      } else {\n        logger.success('Migrations up to date');\n      }\n    } catch (error) {\n      hasError = true;\n      logger.error(`Database check failed: ${String(error)}`);\n    }\n\n    if (!process.env.OPENAI_API_KEY) {\n      logger.warn('OPENAI_API_KEY not set');\n      if (options.fix) {\n        logger.info('Set OPENAI_API_KEY in your environment to enable analysis');\n      }\n    }\n\n    if (hasError) {\n      process.exitCode = 1;\n    }\n  });\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { loadNeuronConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst CONFIG_FILE = path.resolve('neuron.config.ts');\n\nconst serializeConfig = (config: unknown): string => `import { defineNeuronConfig } from 'omi-neuron-web';\\n\\nexport default defineNeuronConfig(${JSON.stringify(\n  config,\n  null,\n  2\n)});\\n`;\n\nconst getNestedValue = (obj: Record<string, unknown>, key: string): unknown => {\n  return key.split('.').reduce((acc, part) => {\n    if (acc && typeof acc === 'object' && part in acc) {\n      return (acc as Record<string, unknown>)[part];\n    }\n    return undefined;\n  }, obj as unknown);\n};\n\nconst setNestedValue = (obj: Record<string, unknown>, key: string, value: unknown): void => {\n  const parts = key.split('.');\n  let current = obj;\n  for (let i = 0; i < parts.length - 1; i += 1) {\n    const part = parts[i];\n    if (!current[part] || typeof current[part] !== 'object') {\n      current[part] = {};\n    }\n    current = current[part] as Record<string, unknown>;\n  }\n  current[parts[parts.length - 1]] = value;\n};\n\nexport const configCommand = new Command('config')\n  .description('Manage neuron.config.ts')\n  .addCommand(\n    new Command('get')\n      .argument('<key>', 'Dot path key')\n      .action(async (key) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const value = getNestedValue(config as unknown as Record<string, unknown>, key);\n        console.log(JSON.stringify(value, null, 2));\n      })\n  )\n  .addCommand(\n    new Command('set')\n      .argument('<key>', 'Dot path key')\n      .argument('<value>', 'Value (JSON)')\n      .action(async (key, value) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const parsed = JSON.parse(value);\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        setNestedValue(updated, key, parsed);\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success(`Updated ${key}`);\n      })\n  )\n  .addCommand(\n    new Command('list').action(async () => {\n      const config = await loadNeuronConfig();\n      if (!config) {\n        logger.error('neuron.config.ts not found');\n        return;\n      }\n      console.log(JSON.stringify(config, null, 2));\n    })\n  )\n  .addCommand(\n    new Command('reset')\n      .option('--section <section>', 'Section to reset')\n      .action(async (options) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        if (options.section) {\n          delete updated[options.section];\n        } else {\n          for (const key of Object.keys(updated)) {\n            delete updated[key];\n          }\n        }\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success('Config reset');\n      })\n  );\n","#!/usr/bin/env node\nimport { program } from 'commander';\nimport { initCommand } from './commands/init';\nimport { dbCommand } from './commands/db';\nimport { analyzeCommand } from './commands/analyze';\nimport { validateCommand } from './commands/validate';\nimport { configCommand } from './commands/config';\n\nprogram\n  .name('omi-neuron')\n  .description('CLI for omi-neuron-web library')\n  .version('0.1.0');\n\nprogram.addCommand(initCommand);\nprogram.addCommand(dbCommand);\nprogram.addCommand(analyzeCommand);\nprogram.addCommand(validateCommand);\nprogram.addCommand(configCommand);\n\nprogram.parse();\n"]}
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chalk from 'chalk';\n\nexport const logger = {\n  info: (message: string) => {\n    console.log(chalk.cyan(`[omi-neuron] ${message}`));\n  },\n  success: (message: string) => {\n    console.log(chalk.green(`[omi-neuron] ${message}`));\n  },\n  warn: (message: string) => {\n    console.warn(chalk.yellow(`[omi-neuron] ${message}`));\n  },\n  error: (message: string) => {\n    console.error(chalk.red(`[omi-neuron] ${message}`));\n  },\n};\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\n\nexport const renderTemplate = (template: string, values: Record<string, string>): string => {\n  let output = template;\n  for (const [key, value] of Object.entries(values)) {\n    output = output.replace(new RegExp(`{{${key}}}`, 'g'), value);\n  }\n  return output;\n};\n\nexport async function writeTemplateFile(\n  filePath: string,\n  template: string,\n  values: Record<string, string>,\n  force = false\n): Promise<void> {\n  const resolved = path.resolve(filePath);\n  await fs.mkdir(path.dirname(resolved), { recursive: true });\n  try {\n    await fs.access(resolved);\n    if (!force) {\n      throw new Error(`File already exists: ${resolved}`);\n    }\n  } catch {\n    // File does not exist; continue.\n  }\n\n  const content = renderTemplate(template, values);\n  await fs.writeFile(resolved, content, 'utf8');\n}\n","import path from 'node:path';\nimport fs from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { logger } from '../utils/logger';\nimport { writeTemplateFile } from '../utils/templates';\n\nconst CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from '@omiron33/omi-neuron-web';\n\nexport default defineNeuronConfig({\n  instance: {\n    name: '{{INSTANCE_NAME}}',\n    version: '0.1.1',\n    repoName: '{{REPO_NAME}}',\n  },\n  visualization: DEFAULT_VISUALIZATION_SETTINGS,\n  analysis: DEFAULT_ANALYSIS_SETTINGS,\n  nodeTypes: [],\n  domains: [],\n  relationshipTypes: [],\n  openai: {\n    apiKey: process.env.OPENAI_API_KEY ?? '',\n  },\n  database: {\n    mode: 'docker',\n    port: {{DB_PORT}},\n    user: 'neuron',\n    password: 'neuron_dev',\n    database: 'neuron_web',\n  },\n  api: {\n    basePath: '/api/neuron',\n    enableCors: false,\n  },\n  logging: {\n    level: 'info',\n    prettyPrint: true,\n  },\n});\n`;\n\nconst ENV_TEMPLATE = `# omi-neuron-web environment variables\nOPENAI_API_KEY=\nDATABASE_URL=\n`;\n\nconst DOCKER_TEMPLATE = `version: '3.8'\n\nservices:\n  pg-{{REPO_NAME}}:\n    image: pgvector/pgvector:pg16\n    container_name: pg-{{REPO_NAME}}\n    restart: unless-stopped\n    environment:\n      POSTGRES_USER: neuron\n      POSTGRES_PASSWORD: neuron_dev\n      POSTGRES_DB: neuron_web\n    ports:\n      - \"{{DB_PORT}}:5432\"\n    volumes:\n      - {{REPO_NAME}}_neuron_data:/var/lib/postgresql/data\n    healthcheck:\n      test: [\"CMD-SHELL\", \"pg_isready -U neuron -d neuron_web\"]\n      interval: 10s\n      timeout: 5s\n      retries: 5\n\nvolumes:\n  {{REPO_NAME}}_neuron_data:\n    name: {{REPO_NAME}}_neuron_data\n`;\n\nconst API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from '@omiron33/omi-neuron-web/api';\nimport config from '../../../../neuron.config';\n\nconst routes = createNeuronRoutes(config);\n\nexport const GET = routes.health.GET;\nexport const POST = routes.health.GET;\n`;\n\nexport const initCommand = new Command('init')\n  .description('Initialize omi-neuron-web in your project')\n  .option('--name <name>', 'Instance name (default: directory name)')\n  .option('--port <port>', 'PostgreSQL port (default: 5433)', '5433')\n  .option('--skip-docker', \"Don't generate Docker files\")\n  .option('--skip-api', \"Don't generate API route files\")\n  .option('--skip-config', \"Don't generate neuron.config.ts\")\n  .option('--app-dir <path>', 'Path to Next.js app directory', './app')\n  .option('--force', 'Overwrite existing files')\n  .action(async (options) => {\n    const repoName = path.basename(process.cwd());\n    const instanceName = options.name ?? repoName;\n    const port = Number(options.port ?? 5433);\n\n    if (!options.skipConfig) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'neuron.config.ts'),\n        CONFIG_TEMPLATE,\n        {\n          INSTANCE_NAME: instanceName,\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created neuron.config.ts');\n    }\n\n    if (!options.skipDocker) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'docker-compose.neuron.yml'),\n        DOCKER_TEMPLATE,\n        {\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created docker-compose.neuron.yml');\n    }\n\n    await writeTemplateFile(\n      path.join(process.cwd(), '.env.neuron.local'),\n      ENV_TEMPLATE,\n      {},\n      options.force\n    );\n    logger.success('Created .env.neuron.local');\n\n    if (!options.skipApi) {\n      const apiPath = path.join(process.cwd(), options.appDir, 'api', 'neuron', '[...path]');\n      await fs.mkdir(apiPath, { recursive: true });\n      await fs.writeFile(path.join(apiPath, 'route.ts'), API_ROUTE_TEMPLATE, 'utf8');\n      logger.success('Created Next.js API route stub');\n    }\n\n    logger.info('Initialization complete.');\n  });\n","import path from 'node:path';\nimport { pathToFileURL } from 'node:url';\nimport fs from 'node:fs/promises';\nimport type { NeuronConfig } from '../../core/types/settings';\n\nexport interface CliConfig {\n  repoName: string;\n  port: number;\n  containerName?: string;\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n}\n\nexport async function loadNeuronConfig(): Promise<NeuronConfig | null> {\n  const configPath = path.resolve('neuron.config.ts');\n  try {\n    await fs.access(configPath);\n  } catch {\n    return null;\n  }\n\n  try {\n    const module = await import(pathToFileURL(configPath).toString());\n    return module.default ?? module;\n  } catch (error) {\n    throw new Error(\n      `Unable to load neuron.config.ts. Consider transpiling or using a JS config. ${String(error)}`\n    );\n  }\n}\n\nexport async function resolveCliConfig(overrides?: Partial<CliConfig>): Promise<CliConfig> {\n  const repoName = overrides?.repoName ?? path.basename(process.cwd());\n  let config: NeuronConfig | null = null;\n\n  try {\n    config = await loadNeuronConfig();\n  } catch {\n    config = null;\n  }\n\n  return {\n    repoName,\n    port:\n      overrides?.port ??\n      config?.database?.port ??\n      (process.env.DB_PORT ? Number(process.env.DB_PORT) : 5433),\n    containerName: overrides?.containerName ?? config?.database?.containerName,\n    databaseUrl: overrides?.databaseUrl ?? config?.database?.url ?? process.env.DATABASE_URL,\n    databaseUser: overrides?.databaseUser ?? config?.database?.user ?? process.env.DB_USER,\n    databasePassword:\n      overrides?.databasePassword ?? config?.database?.password ?? process.env.DB_PASSWORD,\n    databaseName: overrides?.databaseName ?? config?.database?.database ?? process.env.DB_NAME,\n  };\n}\n","import { createInterface } from 'node:readline/promises';\nimport { stdin as input, stdout as output } from 'node:process';\n\nexport async function confirmPrompt(message: string): Promise<boolean> {\n  const rl = createInterface({ input, output });\n  const answer = await rl.question(`${message} (y/N): `);\n  rl.close();\n  return answer.trim().toLowerCase() === 'y';\n}\n","type SpinnerState = 'running' | 'stopped';\n\nexport class Spinner {\n  private state: SpinnerState = 'stopped';\n  private intervalId: NodeJS.Timeout | null = null;\n  private frames = ['-', '\\\\', '|', '/'];\n  private frameIndex = 0;\n\n  constructor(private message: string) {}\n\n  start(): void {\n    if (this.state === 'running') return;\n    this.state = 'running';\n    this.intervalId = setInterval(() => {\n      const frame = this.frames[this.frameIndex % this.frames.length];\n      this.frameIndex += 1;\n      process.stdout.write(`\\r${frame} ${this.message}`);\n    }, 120);\n  }\n\n  stop(success = true, finalMessage?: string): void {\n    if (this.intervalId) {\n      clearInterval(this.intervalId);\n    }\n    this.state = 'stopped';\n    const symbol = success ? '✓' : '✗';\n    process.stdout.write(`\\r${symbol} ${finalMessage ?? this.message}\\n`);\n  }\n}\n","import { Command } from 'commander';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { confirmPrompt } from '../utils/prompts';\nimport { Spinner } from '../utils/spinner';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const dbCommand = new Command('db')\n  .description('Database management commands')\n  .addCommand(\n    new Command('up')\n      .description('Start PostgreSQL container')\n      .option('--port <port>', 'Override port')\n      .option('--force-recreate', 'Force recreate container')\n      .option('--wait', 'Wait for readiness', true)\n      .action(async (options) => {\n        const config = await resolveCliConfig({\n          port: options.port ? Number(options.port) : undefined,\n        });\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n          user: config.databaseUser,\n          password: config.databasePassword,\n          database: config.databaseName,\n        });\n        const spinner = new Spinner('Starting PostgreSQL container');\n        spinner.start();\n        await docker.start({\n          forceRecreate: options.forceRecreate,\n          waitForReady: options.wait,\n        });\n        spinner.stop(true, 'Database ready');\n        const connectionString = await docker.getConnectionString();\n        logger.info(`Connection string: ${connectionString}`);\n      })\n  )\n  .addCommand(\n    new Command('down')\n      .description('Stop PostgreSQL container')\n      .option('--remove-volumes', 'Remove volumes (destructive)')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        await docker.stop({ removeVolumes: options.removeVolumes });\n        logger.success('Database container stopped');\n      })\n  )\n  .addCommand(\n    new Command('migrate')\n      .description('Run migrations')\n      .option('--status', 'Show status only')\n      .option('--rollback <count>', 'Rollback N migrations')\n      .option('--to <version>', 'Migrate to specific version')\n      .option('--dry-run', 'Show SQL without executing')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n\n        if (options.status) {\n          const status = await runner.getStatus();\n          status.forEach((item) => {\n            logger.info(`${item.version} ${item.name} - ${item.status}`);\n          });\n          return;\n        }\n\n        if (options.dryRun) {\n          const sql = await runner.dryRun(options.rollback ? 'down' : 'up');\n          logger.info(sql.join('\\n\\n'));\n          return;\n        }\n\n        if (options.rollback) {\n          await runner.down({ count: Number(options.rollback) });\n          logger.success('Rollback complete');\n          return;\n        }\n\n        await runner.up({ to: options.to });\n        logger.success('Migrations complete');\n      })\n  )\n  .addCommand(\n    new Command('status')\n      .description('Show database status')\n      .option('--json', 'Output JSON')\n      .option('--verbose', 'Include stats')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        const health = await docker.healthCheck();\n\n        if (options.json) {\n          console.log(JSON.stringify(health, null, 2));\n          return;\n        }\n\n        logger.info(`Container running: ${health.containerRunning}`);\n        logger.info(`Database ready: ${health.databaseReady}`);\n        if (options.verbose) {\n          const stats = await docker.getStats();\n          logger.info(`Stats: ${JSON.stringify(stats)}`);\n        }\n      })\n  )\n  .addCommand(\n    new Command('reset')\n      .description('Reset database schema')\n      .option('--confirm', 'Skip confirmation prompt')\n      .action(async (options) => {\n        if (!options.confirm) {\n          const confirmed = await confirmPrompt('This will drop and reapply all migrations. Continue?');\n          if (!confirmed) return;\n        }\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n        await runner.reset();\n        logger.success('Database reset complete');\n      })\n  )\n  .addCommand(\n    new Command('seed')\n      .description('Seed database with sample data')\n      .option('--file <path>', 'Custom seed file')\n      .option('--clear', 'Clear before seeding')\n      .option('--count <n>', 'Number of example nodes', '10')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        if (options.clear) {\n          await db.execute('DELETE FROM edges');\n          await db.execute('DELETE FROM nodes');\n        }\n        const count = Number(options.count ?? 10);\n        for (let i = 0; i < count; i += 1) {\n          await db.execute(\n            'INSERT INTO nodes (slug, label, node_type, domain, metadata) VALUES ($1, $2, $3, $4, $5)',\n            [`seed-${i + 1}`, `Seed Node ${i + 1}`, 'concept', 'general', {}]\n          );\n        }\n        logger.success('Seed data inserted');\n      })\n  );\n","import { Command } from 'commander';\nimport { Database } from '../../storage/database';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { EventBus } from '../../core/events/event-bus';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ClusteringEngine } from '../../core/analysis/clustering-engine';\nimport { RelationshipEngine } from '../../core/analysis/relationship-engine';\nimport { AnalysisPipeline } from '../../core/analysis/pipeline';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nasync function buildPipeline(): Promise<AnalysisPipeline> {\n  const config = await resolveCliConfig();\n  const db = new Database({ connectionString: buildConnectionString(config) });\n  const events = new EventBus();\n\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: process.env.OPENAI_API_KEY ?? '',\n      model: 'text-embedding-3-small',\n      batchSize: 20,\n      rateLimit: 60,\n      cacheTTL: 86400,\n      maxRetries: 3,\n    },\n    db\n  );\n\n  const clustering = new ClusteringEngine(db, embeddings);\n  const relationships = new RelationshipEngine(db, {\n    model: 'gpt-4o-mini',\n    minConfidence: 0.7,\n    maxPerNode: 10,\n    similarityThreshold: 0.75,\n    includeExisting: false,\n    batchSize: 10,\n    rateLimit: 30,\n  });\n\n  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);\n}\n\nexport const analyzeCommand = new Command('analyze')\n  .description('Analysis commands')\n  .addCommand(\n    new Command('embeddings')\n      .description('Generate embeddings')\n      .option('--node-ids <ids>', 'Comma-separated node IDs')\n      .option('--force', 'Regenerate existing')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        const nodeIds = options.nodeIds ? options.nodeIds.split(',') : undefined;\n        await pipeline.runEmbeddings({ nodeIds, forceRecompute: options.force });\n        logger.success('Embeddings complete');\n      })\n  )\n  .addCommand(\n    new Command('cluster')\n      .description('Run clustering')\n      .option('--count <n>', 'Number of clusters')\n      .option('--algorithm <alg>', 'kmeans, dbscan, hierarchical', 'kmeans')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runClustering({\n          clusterCount: options.count ? Number(options.count) : undefined,\n          clusteringAlgorithm: options.algorithm,\n        });\n        logger.success('Clustering complete');\n      })\n  )\n  .addCommand(\n    new Command('relationships')\n      .description('Infer relationships')\n      .option('--threshold <n>', 'Min confidence (0-1)', '0.7')\n      .option('--dry-run', 'Show without saving')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runRelationships({\n          relationshipThreshold: Number(options.threshold),\n        });\n        logger.success('Relationship inference complete');\n      })\n  )\n  .addCommand(\n    new Command('full')\n      .description('Run full analysis pipeline')\n      .option('--force', 'Force recompute all')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runFull({ forceRecompute: options.force });\n        logger.success('Analysis pipeline complete');\n      })\n  );\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const validateCommand = new Command('validate')\n  .description('Validate configuration and setup')\n  .option('--fix', 'Attempt to fix issues')\n  .option('--verbose', 'Show detailed validation')\n  .action(async (options) => {\n    const config = await resolveCliConfig();\n    let hasError = false;\n\n    const configPath = path.resolve('neuron.config.ts');\n    try {\n      await fs.access(configPath);\n      logger.success('neuron.config.ts exists');\n    } catch {\n      hasError = true;\n      logger.error('neuron.config.ts not found');\n    }\n\n    try {\n      const docker = new DockerManager({ repoName: config.repoName, port: config.port });\n      const health = await docker.healthCheck();\n      logger.info(`Docker container running: ${health.containerRunning}`);\n      logger.info(`Database ready: ${health.databaseReady}`);\n    } catch (error) {\n      hasError = true;\n      logger.error(`Docker check failed: ${String(error)}`);\n    }\n\n    try {\n      const db = new Database({ connectionString: buildConnectionString(config) });\n      await db.connect();\n      logger.success('Database connection ok');\n      const runner = new MigrationRunner(db);\n      const pending = await runner.getPending();\n      if (pending.length > 0) {\n        logger.warn(`Pending migrations: ${pending.map((m) => m.version).join(', ')}`);\n      } else {\n        logger.success('Migrations up to date');\n      }\n    } catch (error) {\n      hasError = true;\n      logger.error(`Database check failed: ${String(error)}`);\n    }\n\n    if (!process.env.OPENAI_API_KEY) {\n      logger.warn('OPENAI_API_KEY not set');\n      if (options.fix) {\n        logger.info('Set OPENAI_API_KEY in your environment to enable analysis');\n      }\n    }\n\n    if (hasError) {\n      process.exitCode = 1;\n    }\n  });\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { loadNeuronConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst CONFIG_FILE = path.resolve('neuron.config.ts');\n\nconst serializeConfig = (config: unknown): string => `import { defineNeuronConfig } from '@omiron33/omi-neuron-web';\\n\\nexport default defineNeuronConfig(${JSON.stringify(\n  config,\n  null,\n  2\n)});\\n`;\n\nconst getNestedValue = (obj: Record<string, unknown>, key: string): unknown => {\n  return key.split('.').reduce((acc, part) => {\n    if (acc && typeof acc === 'object' && part in acc) {\n      return (acc as Record<string, unknown>)[part];\n    }\n    return undefined;\n  }, obj as unknown);\n};\n\nconst setNestedValue = (obj: Record<string, unknown>, key: string, value: unknown): void => {\n  const parts = key.split('.');\n  let current = obj;\n  for (let i = 0; i < parts.length - 1; i += 1) {\n    const part = parts[i];\n    if (!current[part] || typeof current[part] !== 'object') {\n      current[part] = {};\n    }\n    current = current[part] as Record<string, unknown>;\n  }\n  current[parts[parts.length - 1]] = value;\n};\n\nexport const configCommand = new Command('config')\n  .description('Manage neuron.config.ts')\n  .addCommand(\n    new Command('get')\n      .argument('<key>', 'Dot path key')\n      .action(async (key) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const value = getNestedValue(config as unknown as Record<string, unknown>, key);\n        console.log(JSON.stringify(value, null, 2));\n      })\n  )\n  .addCommand(\n    new Command('set')\n      .argument('<key>', 'Dot path key')\n      .argument('<value>', 'Value (JSON)')\n      .action(async (key, value) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const parsed = JSON.parse(value);\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        setNestedValue(updated, key, parsed);\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success(`Updated ${key}`);\n      })\n  )\n  .addCommand(\n    new Command('list').action(async () => {\n      const config = await loadNeuronConfig();\n      if (!config) {\n        logger.error('neuron.config.ts not found');\n        return;\n      }\n      console.log(JSON.stringify(config, null, 2));\n    })\n  )\n  .addCommand(\n    new Command('reset')\n      .option('--section <section>', 'Section to reset')\n      .action(async (options) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        if (options.section) {\n          delete updated[options.section];\n        } else {\n          for (const key of Object.keys(updated)) {\n            delete updated[key];\n          }\n        }\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success('Config reset');\n      })\n  );\n","#!/usr/bin/env node\nimport { program } from 'commander';\nimport { initCommand } from './commands/init';\nimport { dbCommand } from './commands/db';\nimport { analyzeCommand } from './commands/analyze';\nimport { validateCommand } from './commands/validate';\nimport { configCommand } from './commands/config';\n\nprogram\n  .name('omi-neuron')\n  .description('CLI for omi-neuron-web library')\n  .version('0.1.0');\n\nprogram.addCommand(initCommand);\nprogram.addCommand(dbCommand);\nprogram.addCommand(analyzeCommand);\nprogram.addCommand(validateCommand);\nprogram.addCommand(configCommand);\n\nprogram.parse();\n\n"]}

package/dist/cli/index.js

@@ -46,12 +46,12 @@ async function writeTemplateFile(filePath, template, values, force = false) {
 }
 
 // src/cli/commands/init.ts
-var CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from 'omi-neuron-web';
+var CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from '@omiron33/omi-neuron-web';
 
 export default defineNeuronConfig({
   instance: {
     name: '{{INSTANCE_NAME}}',
-    version: '0.1.0',
+    version: '0.1.1',
     repoName: '{{REPO_NAME}}',
   },
   visualization: DEFAULT_VISUALIZATION_SETTINGS,
@@ -108,7 +108,7 @@ volumes:
   {{REPO_NAME}}_neuron_data:
     name: {{REPO_NAME}}_neuron_data
 `;
-var API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from 'omi-neuron-web/api';
+var API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from '@omiron33/omi-neuron-web/api';
 import config from '../../../../neuron.config';
 
 const routes = createNeuronRoutes(config);
@@ -471,7 +471,7 @@ var validateCommand = new Command("validate").description("Validate configuratio
   }
 });
 var CONFIG_FILE = path2.resolve("neuron.config.ts");
-var serializeConfig = (config) => `import { defineNeuronConfig } from 'omi-neuron-web';
+var serializeConfig = (config) => `import { defineNeuronConfig } from '@omiron33/omi-neuron-web';
 
 export default defineNeuronConfig(${JSON.stringify(
   config,

package/dist/cli/index.js.map

@@ -1 +1 @@
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chalk from 'chalk';\n\nexport const logger = {\n  info: (message: string) => {\n    console.log(chalk.cyan(`[omi-neuron] ${message}`));\n  },\n  success: (message: string) => {\n    console.log(chalk.green(`[omi-neuron] ${message}`));\n  },\n  warn: (message: string) => {\n    console.warn(chalk.yellow(`[omi-neuron] ${message}`));\n  },\n  error: (message: string) => {\n    console.error(chalk.red(`[omi-neuron] ${message}`));\n  },\n};\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\n\nexport const renderTemplate = (template: string, values: Record<string, string>): string => {\n  let output = template;\n  for (const [key, value] of Object.entries(values)) {\n    output = output.replace(new RegExp(`{{${key}}}`, 'g'), value);\n  }\n  return output;\n};\n\nexport async function writeTemplateFile(\n  filePath: string,\n  template: string,\n  values: Record<string, string>,\n  force = false\n): Promise<void> {\n  const resolved = path.resolve(filePath);\n  await fs.mkdir(path.dirname(resolved), { recursive: true });\n  try {\n    await fs.access(resolved);\n    if (!force) {\n      throw new Error(`File already exists: ${resolved}`);\n    }\n  } catch {\n    // File does not exist; continue.\n  }\n\n  const content = renderTemplate(template, values);\n  await fs.writeFile(resolved, content, 'utf8');\n}\n","import path from 'node:path';\nimport fs from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { logger } from '../utils/logger';\nimport { writeTemplateFile } from '../utils/templates';\n\nconst CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from 'omi-neuron-web';\n\nexport default defineNeuronConfig({\n  instance: {\n    name: '{{INSTANCE_NAME}}',\n    version: '0.1.0',\n    repoName: '{{REPO_NAME}}',\n  },\n  visualization: DEFAULT_VISUALIZATION_SETTINGS,\n  analysis: DEFAULT_ANALYSIS_SETTINGS,\n  nodeTypes: [],\n  domains: [],\n  relationshipTypes: [],\n  openai: {\n    apiKey: process.env.OPENAI_API_KEY ?? '',\n  },\n  database: {\n    mode: 'docker',\n    port: {{DB_PORT}},\n    user: 'neuron',\n    password: 'neuron_dev',\n    database: 'neuron_web',\n  },\n  api: {\n    basePath: '/api/neuron',\n    enableCors: false,\n  },\n  logging: {\n    level: 'info',\n    prettyPrint: true,\n  },\n});\n`;\n\nconst ENV_TEMPLATE = `# omi-neuron-web environment variables\nOPENAI_API_KEY=\nDATABASE_URL=\n`;\n\nconst DOCKER_TEMPLATE = `version: '3.8'\n\nservices:\n  pg-{{REPO_NAME}}:\n    image: pgvector/pgvector:pg16\n    container_name: pg-{{REPO_NAME}}\n    restart: unless-stopped\n    environment:\n      POSTGRES_USER: neuron\n      POSTGRES_PASSWORD: neuron_dev\n      POSTGRES_DB: neuron_web\n    ports:\n      - \"{{DB_PORT}}:5432\"\n    volumes:\n      - {{REPO_NAME}}_neuron_data:/var/lib/postgresql/data\n    healthcheck:\n      test: [\"CMD-SHELL\", \"pg_isready -U neuron -d neuron_web\"]\n      interval: 10s\n      timeout: 5s\n      retries: 5\n\nvolumes:\n  {{REPO_NAME}}_neuron_data:\n    name: {{REPO_NAME}}_neuron_data\n`;\n\nconst API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from 'omi-neuron-web/api';\nimport config from '../../../../neuron.config';\n\nconst routes = createNeuronRoutes(config);\n\nexport const GET = routes.health.GET;\nexport const POST = routes.health.GET;\n`;\n\nexport const initCommand = new Command('init')\n  .description('Initialize omi-neuron-web in your project')\n  .option('--name <name>', 'Instance name (default: directory name)')\n  .option('--port <port>', 'PostgreSQL port (default: 5433)', '5433')\n  .option('--skip-docker', \"Don't generate Docker files\")\n  .option('--skip-api', \"Don't generate API route files\")\n  .option('--skip-config', \"Don't generate neuron.config.ts\")\n  .option('--app-dir <path>', 'Path to Next.js app directory', './app')\n  .option('--force', 'Overwrite existing files')\n  .action(async (options) => {\n    const repoName = path.basename(process.cwd());\n    const instanceName = options.name ?? repoName;\n    const port = Number(options.port ?? 5433);\n\n    if (!options.skipConfig) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'neuron.config.ts'),\n        CONFIG_TEMPLATE,\n        {\n          INSTANCE_NAME: instanceName,\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created neuron.config.ts');\n    }\n\n    if (!options.skipDocker) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'docker-compose.neuron.yml'),\n        DOCKER_TEMPLATE,\n        {\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created docker-compose.neuron.yml');\n    }\n\n    await writeTemplateFile(\n      path.join(process.cwd(), '.env.neuron.local'),\n      ENV_TEMPLATE,\n      {},\n      options.force\n    );\n    logger.success('Created .env.neuron.local');\n\n    if (!options.skipApi) {\n      const apiPath = path.join(process.cwd(), options.appDir, 'api', 'neuron', '[...path]');\n      await fs.mkdir(apiPath, { recursive: true });\n      await fs.writeFile(path.join(apiPath, 'route.ts'), API_ROUTE_TEMPLATE, 'utf8');\n      logger.success('Created Next.js API route stub');\n    }\n\n    logger.info('Initialization complete.');\n  });\n","import path from 'node:path';\nimport { pathToFileURL } from 'node:url';\nimport fs from 'node:fs/promises';\nimport type { NeuronConfig } from '../../core/types/settings';\n\nexport interface CliConfig {\n  repoName: string;\n  port: number;\n  containerName?: string;\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n}\n\nexport async function loadNeuronConfig(): Promise<NeuronConfig | null> {\n  const configPath = path.resolve('neuron.config.ts');\n  try {\n    await fs.access(configPath);\n  } catch {\n    return null;\n  }\n\n  try {\n    const module = await import(pathToFileURL(configPath).toString());\n    return module.default ?? module;\n  } catch (error) {\n    throw new Error(\n      `Unable to load neuron.config.ts. Consider transpiling or using a JS config. ${String(error)}`\n    );\n  }\n}\n\nexport async function resolveCliConfig(overrides?: Partial<CliConfig>): Promise<CliConfig> {\n  const repoName = overrides?.repoName ?? path.basename(process.cwd());\n  let config: NeuronConfig | null = null;\n\n  try {\n    config = await loadNeuronConfig();\n  } catch {\n    config = null;\n  }\n\n  return {\n    repoName,\n    port:\n      overrides?.port ??\n      config?.database?.port ??\n      (process.env.DB_PORT ? Number(process.env.DB_PORT) : 5433),\n    containerName: overrides?.containerName ?? config?.database?.containerName,\n    databaseUrl: overrides?.databaseUrl ?? config?.database?.url ?? process.env.DATABASE_URL,\n    databaseUser: overrides?.databaseUser ?? config?.database?.user ?? process.env.DB_USER,\n    databasePassword:\n      overrides?.databasePassword ?? config?.database?.password ?? process.env.DB_PASSWORD,\n    databaseName: overrides?.databaseName ?? config?.database?.database ?? process.env.DB_NAME,\n  };\n}\n","import { createInterface } from 'node:readline/promises';\nimport { stdin as input, stdout as output } from 'node:process';\n\nexport async function confirmPrompt(message: string): Promise<boolean> {\n  const rl = createInterface({ input, output });\n  const answer = await rl.question(`${message} (y/N): `);\n  rl.close();\n  return answer.trim().toLowerCase() === 'y';\n}\n","type SpinnerState = 'running' | 'stopped';\n\nexport class Spinner {\n  private state: SpinnerState = 'stopped';\n  private intervalId: NodeJS.Timeout | null = null;\n  private frames = ['-', '\\\\', '|', '/'];\n  private frameIndex = 0;\n\n  constructor(private message: string) {}\n\n  start(): void {\n    if (this.state === 'running') return;\n    this.state = 'running';\n    this.intervalId = setInterval(() => {\n      const frame = this.frames[this.frameIndex % this.frames.length];\n      this.frameIndex += 1;\n      process.stdout.write(`\\r${frame} ${this.message}`);\n    }, 120);\n  }\n\n  stop(success = true, finalMessage?: string): void {\n    if (this.intervalId) {\n      clearInterval(this.intervalId);\n    }\n    this.state = 'stopped';\n    const symbol = success ? '✓' : '✗';\n    process.stdout.write(`\\r${symbol} ${finalMessage ?? this.message}\\n`);\n  }\n}\n","import { Command } from 'commander';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { confirmPrompt } from '../utils/prompts';\nimport { Spinner } from '../utils/spinner';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const dbCommand = new Command('db')\n  .description('Database management commands')\n  .addCommand(\n    new Command('up')\n      .description('Start PostgreSQL container')\n      .option('--port <port>', 'Override port')\n      .option('--force-recreate', 'Force recreate container')\n      .option('--wait', 'Wait for readiness', true)\n      .action(async (options) => {\n        const config = await resolveCliConfig({\n          port: options.port ? Number(options.port) : undefined,\n        });\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n          user: config.databaseUser,\n          password: config.databasePassword,\n          database: config.databaseName,\n        });\n        const spinner = new Spinner('Starting PostgreSQL container');\n        spinner.start();\n        await docker.start({\n          forceRecreate: options.forceRecreate,\n          waitForReady: options.wait,\n        });\n        spinner.stop(true, 'Database ready');\n        const connectionString = await docker.getConnectionString();\n        logger.info(`Connection string: ${connectionString}`);\n      })\n  )\n  .addCommand(\n    new Command('down')\n      .description('Stop PostgreSQL container')\n      .option('--remove-volumes', 'Remove volumes (destructive)')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        await docker.stop({ removeVolumes: options.removeVolumes });\n        logger.success('Database container stopped');\n      })\n  )\n  .addCommand(\n    new Command('migrate')\n      .description('Run migrations')\n      .option('--status', 'Show status only')\n      .option('--rollback <count>', 'Rollback N migrations')\n      .option('--to <version>', 'Migrate to specific version')\n      .option('--dry-run', 'Show SQL without executing')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n\n        if (options.status) {\n          const status = await runner.getStatus();\n          status.forEach((item) => {\n            logger.info(`${item.version} ${item.name} - ${item.status}`);\n          });\n          return;\n        }\n\n        if (options.dryRun) {\n          const sql = await runner.dryRun(options.rollback ? 'down' : 'up');\n          logger.info(sql.join('\\n\\n'));\n          return;\n        }\n\n        if (options.rollback) {\n          await runner.down({ count: Number(options.rollback) });\n          logger.success('Rollback complete');\n          return;\n        }\n\n        await runner.up({ to: options.to });\n        logger.success('Migrations complete');\n      })\n  )\n  .addCommand(\n    new Command('status')\n      .description('Show database status')\n      .option('--json', 'Output JSON')\n      .option('--verbose', 'Include stats')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        const health = await docker.healthCheck();\n\n        if (options.json) {\n          console.log(JSON.stringify(health, null, 2));\n          return;\n        }\n\n        logger.info(`Container running: ${health.containerRunning}`);\n        logger.info(`Database ready: ${health.databaseReady}`);\n        if (options.verbose) {\n          const stats = await docker.getStats();\n          logger.info(`Stats: ${JSON.stringify(stats)}`);\n        }\n      })\n  )\n  .addCommand(\n    new Command('reset')\n      .description('Reset database schema')\n      .option('--confirm', 'Skip confirmation prompt')\n      .action(async (options) => {\n        if (!options.confirm) {\n          const confirmed = await confirmPrompt('This will drop and reapply all migrations. Continue?');\n          if (!confirmed) return;\n        }\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n        await runner.reset();\n        logger.success('Database reset complete');\n      })\n  )\n  .addCommand(\n    new Command('seed')\n      .description('Seed database with sample data')\n      .option('--file <path>', 'Custom seed file')\n      .option('--clear', 'Clear before seeding')\n      .option('--count <n>', 'Number of example nodes', '10')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        if (options.clear) {\n          await db.execute('DELETE FROM edges');\n          await db.execute('DELETE FROM nodes');\n        }\n        const count = Number(options.count ?? 10);\n        for (let i = 0; i < count; i += 1) {\n          await db.execute(\n            'INSERT INTO nodes (slug, label, node_type, domain, metadata) VALUES ($1, $2, $3, $4, $5)',\n            [`seed-${i + 1}`, `Seed Node ${i + 1}`, 'concept', 'general', {}]\n          );\n        }\n        logger.success('Seed data inserted');\n      })\n  );\n","import { Command } from 'commander';\nimport { Database } from '../../storage/database';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { EventBus } from '../../core/events/event-bus';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ClusteringEngine } from '../../core/analysis/clustering-engine';\nimport { RelationshipEngine } from '../../core/analysis/relationship-engine';\nimport { AnalysisPipeline } from '../../core/analysis/pipeline';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nasync function buildPipeline(): Promise<AnalysisPipeline> {\n  const config = await resolveCliConfig();\n  const db = new Database({ connectionString: buildConnectionString(config) });\n  const events = new EventBus();\n\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: process.env.OPENAI_API_KEY ?? '',\n      model: 'text-embedding-3-small',\n      batchSize: 20,\n      rateLimit: 60,\n      cacheTTL: 86400,\n      maxRetries: 3,\n    },\n    db\n  );\n\n  const clustering = new ClusteringEngine(db, embeddings);\n  const relationships = new RelationshipEngine(db, {\n    model: 'gpt-4o-mini',\n    minConfidence: 0.7,\n    maxPerNode: 10,\n    similarityThreshold: 0.75,\n    includeExisting: false,\n    batchSize: 10,\n    rateLimit: 30,\n  });\n\n  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);\n}\n\nexport const analyzeCommand = new Command('analyze')\n  .description('Analysis commands')\n  .addCommand(\n    new Command('embeddings')\n      .description('Generate embeddings')\n      .option('--node-ids <ids>', 'Comma-separated node IDs')\n      .option('--force', 'Regenerate existing')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        const nodeIds = options.nodeIds ? options.nodeIds.split(',') : undefined;\n        await pipeline.runEmbeddings({ nodeIds, forceRecompute: options.force });\n        logger.success('Embeddings complete');\n      })\n  )\n  .addCommand(\n    new Command('cluster')\n      .description('Run clustering')\n      .option('--count <n>', 'Number of clusters')\n      .option('--algorithm <alg>', 'kmeans, dbscan, hierarchical', 'kmeans')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runClustering({\n          clusterCount: options.count ? Number(options.count) : undefined,\n          clusteringAlgorithm: options.algorithm,\n        });\n        logger.success('Clustering complete');\n      })\n  )\n  .addCommand(\n    new Command('relationships')\n      .description('Infer relationships')\n      .option('--threshold <n>', 'Min confidence (0-1)', '0.7')\n      .option('--dry-run', 'Show without saving')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runRelationships({\n          relationshipThreshold: Number(options.threshold),\n        });\n        logger.success('Relationship inference complete');\n      })\n  )\n  .addCommand(\n    new Command('full')\n      .description('Run full analysis pipeline')\n      .option('--force', 'Force recompute all')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runFull({ forceRecompute: options.force });\n        logger.success('Analysis pipeline complete');\n      })\n  );\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const validateCommand = new Command('validate')\n  .description('Validate configuration and setup')\n  .option('--fix', 'Attempt to fix issues')\n  .option('--verbose', 'Show detailed validation')\n  .action(async (options) => {\n    const config = await resolveCliConfig();\n    let hasError = false;\n\n    const configPath = path.resolve('neuron.config.ts');\n    try {\n      await fs.access(configPath);\n      logger.success('neuron.config.ts exists');\n    } catch {\n      hasError = true;\n      logger.error('neuron.config.ts not found');\n    }\n\n    try {\n      const docker = new DockerManager({ repoName: config.repoName, port: config.port });\n      const health = await docker.healthCheck();\n      logger.info(`Docker container running: ${health.containerRunning}`);\n      logger.info(`Database ready: ${health.databaseReady}`);\n    } catch (error) {\n      hasError = true;\n      logger.error(`Docker check failed: ${String(error)}`);\n    }\n\n    try {\n      const db = new Database({ connectionString: buildConnectionString(config) });\n      await db.connect();\n      logger.success('Database connection ok');\n      const runner = new MigrationRunner(db);\n      const pending = await runner.getPending();\n      if (pending.length > 0) {\n        logger.warn(`Pending migrations: ${pending.map((m) => m.version).join(', ')}`);\n      } else {\n        logger.success('Migrations up to date');\n      }\n    } catch (error) {\n      hasError = true;\n      logger.error(`Database check failed: ${String(error)}`);\n    }\n\n    if (!process.env.OPENAI_API_KEY) {\n      logger.warn('OPENAI_API_KEY not set');\n      if (options.fix) {\n        logger.info('Set OPENAI_API_KEY in your environment to enable analysis');\n      }\n    }\n\n    if (hasError) {\n      process.exitCode = 1;\n    }\n  });\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { loadNeuronConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst CONFIG_FILE = path.resolve('neuron.config.ts');\n\nconst serializeConfig = (config: unknown): string => `import { defineNeuronConfig } from 'omi-neuron-web';\\n\\nexport default defineNeuronConfig(${JSON.stringify(\n  config,\n  null,\n  2\n)});\\n`;\n\nconst getNestedValue = (obj: Record<string, unknown>, key: string): unknown => {\n  return key.split('.').reduce((acc, part) => {\n    if (acc && typeof acc === 'object' && part in acc) {\n      return (acc as Record<string, unknown>)[part];\n    }\n    return undefined;\n  }, obj as unknown);\n};\n\nconst setNestedValue = (obj: Record<string, unknown>, key: string, value: unknown): void => {\n  const parts = key.split('.');\n  let current = obj;\n  for (let i = 0; i < parts.length - 1; i += 1) {\n    const part = parts[i];\n    if (!current[part] || typeof current[part] !== 'object') {\n      current[part] = {};\n    }\n    current = current[part] as Record<string, unknown>;\n  }\n  current[parts[parts.length - 1]] = value;\n};\n\nexport const configCommand = new Command('config')\n  .description('Manage neuron.config.ts')\n  .addCommand(\n    new Command('get')\n      .argument('<key>', 'Dot path key')\n      .action(async (key) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const value = getNestedValue(config as unknown as Record<string, unknown>, key);\n        console.log(JSON.stringify(value, null, 2));\n      })\n  )\n  .addCommand(\n    new Command('set')\n      .argument('<key>', 'Dot path key')\n      .argument('<value>', 'Value (JSON)')\n      .action(async (key, value) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const parsed = JSON.parse(value);\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        setNestedValue(updated, key, parsed);\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success(`Updated ${key}`);\n      })\n  )\n  .addCommand(\n    new Command('list').action(async () => {\n      const config = await loadNeuronConfig();\n      if (!config) {\n        logger.error('neuron.config.ts not found');\n        return;\n      }\n      console.log(JSON.stringify(config, null, 2));\n    })\n  )\n  .addCommand(\n    new Command('reset')\n      .option('--section <section>', 'Section to reset')\n      .action(async (options) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        if (options.section) {\n          delete updated[options.section];\n        } else {\n          for (const key of Object.keys(updated)) {\n            delete updated[key];\n          }\n        }\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success('Config reset');\n      })\n  );\n","#!/usr/bin/env node\nimport { program } from 'commander';\nimport { initCommand } from './commands/init';\nimport { dbCommand } from './commands/db';\nimport { analyzeCommand } from './commands/analyze';\nimport { validateCommand } from './commands/validate';\nimport { configCommand } from './commands/config';\n\nprogram\n  .name('omi-neuron')\n  .description('CLI for omi-neuron-web library')\n  .version('0.1.0');\n\nprogram.addCommand(initCommand);\nprogram.addCommand(dbCommand);\nprogram.addCommand(analyzeCommand);\nprogram.addCommand(validateCommand);\nprogram.addCommand(configCommand);\n\nprogram.parse();\n"]}
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chalk from 'chalk';\n\nexport const logger = {\n  info: (message: string) => {\n    console.log(chalk.cyan(`[omi-neuron] ${message}`));\n  },\n  success: (message: string) => {\n    console.log(chalk.green(`[omi-neuron] ${message}`));\n  },\n  warn: (message: string) => {\n    console.warn(chalk.yellow(`[omi-neuron] ${message}`));\n  },\n  error: (message: string) => {\n    console.error(chalk.red(`[omi-neuron] ${message}`));\n  },\n};\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\n\nexport const renderTemplate = (template: string, values: Record<string, string>): string => {\n  let output = template;\n  for (const [key, value] of Object.entries(values)) {\n    output = output.replace(new RegExp(`{{${key}}}`, 'g'), value);\n  }\n  return output;\n};\n\nexport async function writeTemplateFile(\n  filePath: string,\n  template: string,\n  values: Record<string, string>,\n  force = false\n): Promise<void> {\n  const resolved = path.resolve(filePath);\n  await fs.mkdir(path.dirname(resolved), { recursive: true });\n  try {\n    await fs.access(resolved);\n    if (!force) {\n      throw new Error(`File already exists: ${resolved}`);\n    }\n  } catch {\n    // File does not exist; continue.\n  }\n\n  const content = renderTemplate(template, values);\n  await fs.writeFile(resolved, content, 'utf8');\n}\n","import path from 'node:path';\nimport fs from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { logger } from '../utils/logger';\nimport { writeTemplateFile } from '../utils/templates';\n\nconst CONFIG_TEMPLATE = `import { defineNeuronConfig, DEFAULT_ANALYSIS_SETTINGS, DEFAULT_VISUALIZATION_SETTINGS } from '@omiron33/omi-neuron-web';\n\nexport default defineNeuronConfig({\n  instance: {\n    name: '{{INSTANCE_NAME}}',\n    version: '0.1.1',\n    repoName: '{{REPO_NAME}}',\n  },\n  visualization: DEFAULT_VISUALIZATION_SETTINGS,\n  analysis: DEFAULT_ANALYSIS_SETTINGS,\n  nodeTypes: [],\n  domains: [],\n  relationshipTypes: [],\n  openai: {\n    apiKey: process.env.OPENAI_API_KEY ?? '',\n  },\n  database: {\n    mode: 'docker',\n    port: {{DB_PORT}},\n    user: 'neuron',\n    password: 'neuron_dev',\n    database: 'neuron_web',\n  },\n  api: {\n    basePath: '/api/neuron',\n    enableCors: false,\n  },\n  logging: {\n    level: 'info',\n    prettyPrint: true,\n  },\n});\n`;\n\nconst ENV_TEMPLATE = `# omi-neuron-web environment variables\nOPENAI_API_KEY=\nDATABASE_URL=\n`;\n\nconst DOCKER_TEMPLATE = `version: '3.8'\n\nservices:\n  pg-{{REPO_NAME}}:\n    image: pgvector/pgvector:pg16\n    container_name: pg-{{REPO_NAME}}\n    restart: unless-stopped\n    environment:\n      POSTGRES_USER: neuron\n      POSTGRES_PASSWORD: neuron_dev\n      POSTGRES_DB: neuron_web\n    ports:\n      - \"{{DB_PORT}}:5432\"\n    volumes:\n      - {{REPO_NAME}}_neuron_data:/var/lib/postgresql/data\n    healthcheck:\n      test: [\"CMD-SHELL\", \"pg_isready -U neuron -d neuron_web\"]\n      interval: 10s\n      timeout: 5s\n      retries: 5\n\nvolumes:\n  {{REPO_NAME}}_neuron_data:\n    name: {{REPO_NAME}}_neuron_data\n`;\n\nconst API_ROUTE_TEMPLATE = `import { createNeuronRoutes } from '@omiron33/omi-neuron-web/api';\nimport config from '../../../../neuron.config';\n\nconst routes = createNeuronRoutes(config);\n\nexport const GET = routes.health.GET;\nexport const POST = routes.health.GET;\n`;\n\nexport const initCommand = new Command('init')\n  .description('Initialize omi-neuron-web in your project')\n  .option('--name <name>', 'Instance name (default: directory name)')\n  .option('--port <port>', 'PostgreSQL port (default: 5433)', '5433')\n  .option('--skip-docker', \"Don't generate Docker files\")\n  .option('--skip-api', \"Don't generate API route files\")\n  .option('--skip-config', \"Don't generate neuron.config.ts\")\n  .option('--app-dir <path>', 'Path to Next.js app directory', './app')\n  .option('--force', 'Overwrite existing files')\n  .action(async (options) => {\n    const repoName = path.basename(process.cwd());\n    const instanceName = options.name ?? repoName;\n    const port = Number(options.port ?? 5433);\n\n    if (!options.skipConfig) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'neuron.config.ts'),\n        CONFIG_TEMPLATE,\n        {\n          INSTANCE_NAME: instanceName,\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created neuron.config.ts');\n    }\n\n    if (!options.skipDocker) {\n      await writeTemplateFile(\n        path.join(process.cwd(), 'docker-compose.neuron.yml'),\n        DOCKER_TEMPLATE,\n        {\n          REPO_NAME: repoName,\n          DB_PORT: String(port),\n        },\n        options.force\n      );\n      logger.success('Created docker-compose.neuron.yml');\n    }\n\n    await writeTemplateFile(\n      path.join(process.cwd(), '.env.neuron.local'),\n      ENV_TEMPLATE,\n      {},\n      options.force\n    );\n    logger.success('Created .env.neuron.local');\n\n    if (!options.skipApi) {\n      const apiPath = path.join(process.cwd(), options.appDir, 'api', 'neuron', '[...path]');\n      await fs.mkdir(apiPath, { recursive: true });\n      await fs.writeFile(path.join(apiPath, 'route.ts'), API_ROUTE_TEMPLATE, 'utf8');\n      logger.success('Created Next.js API route stub');\n    }\n\n    logger.info('Initialization complete.');\n  });\n","import path from 'node:path';\nimport { pathToFileURL } from 'node:url';\nimport fs from 'node:fs/promises';\nimport type { NeuronConfig } from '../../core/types/settings';\n\nexport interface CliConfig {\n  repoName: string;\n  port: number;\n  containerName?: string;\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n}\n\nexport async function loadNeuronConfig(): Promise<NeuronConfig | null> {\n  const configPath = path.resolve('neuron.config.ts');\n  try {\n    await fs.access(configPath);\n  } catch {\n    return null;\n  }\n\n  try {\n    const module = await import(pathToFileURL(configPath).toString());\n    return module.default ?? module;\n  } catch (error) {\n    throw new Error(\n      `Unable to load neuron.config.ts. Consider transpiling or using a JS config. ${String(error)}`\n    );\n  }\n}\n\nexport async function resolveCliConfig(overrides?: Partial<CliConfig>): Promise<CliConfig> {\n  const repoName = overrides?.repoName ?? path.basename(process.cwd());\n  let config: NeuronConfig | null = null;\n\n  try {\n    config = await loadNeuronConfig();\n  } catch {\n    config = null;\n  }\n\n  return {\n    repoName,\n    port:\n      overrides?.port ??\n      config?.database?.port ??\n      (process.env.DB_PORT ? Number(process.env.DB_PORT) : 5433),\n    containerName: overrides?.containerName ?? config?.database?.containerName,\n    databaseUrl: overrides?.databaseUrl ?? config?.database?.url ?? process.env.DATABASE_URL,\n    databaseUser: overrides?.databaseUser ?? config?.database?.user ?? process.env.DB_USER,\n    databasePassword:\n      overrides?.databasePassword ?? config?.database?.password ?? process.env.DB_PASSWORD,\n    databaseName: overrides?.databaseName ?? config?.database?.database ?? process.env.DB_NAME,\n  };\n}\n","import { createInterface } from 'node:readline/promises';\nimport { stdin as input, stdout as output } from 'node:process';\n\nexport async function confirmPrompt(message: string): Promise<boolean> {\n  const rl = createInterface({ input, output });\n  const answer = await rl.question(`${message} (y/N): `);\n  rl.close();\n  return answer.trim().toLowerCase() === 'y';\n}\n","type SpinnerState = 'running' | 'stopped';\n\nexport class Spinner {\n  private state: SpinnerState = 'stopped';\n  private intervalId: NodeJS.Timeout | null = null;\n  private frames = ['-', '\\\\', '|', '/'];\n  private frameIndex = 0;\n\n  constructor(private message: string) {}\n\n  start(): void {\n    if (this.state === 'running') return;\n    this.state = 'running';\n    this.intervalId = setInterval(() => {\n      const frame = this.frames[this.frameIndex % this.frames.length];\n      this.frameIndex += 1;\n      process.stdout.write(`\\r${frame} ${this.message}`);\n    }, 120);\n  }\n\n  stop(success = true, finalMessage?: string): void {\n    if (this.intervalId) {\n      clearInterval(this.intervalId);\n    }\n    this.state = 'stopped';\n    const symbol = success ? '✓' : '✗';\n    process.stdout.write(`\\r${symbol} ${finalMessage ?? this.message}\\n`);\n  }\n}\n","import { Command } from 'commander';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { confirmPrompt } from '../utils/prompts';\nimport { Spinner } from '../utils/spinner';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const dbCommand = new Command('db')\n  .description('Database management commands')\n  .addCommand(\n    new Command('up')\n      .description('Start PostgreSQL container')\n      .option('--port <port>', 'Override port')\n      .option('--force-recreate', 'Force recreate container')\n      .option('--wait', 'Wait for readiness', true)\n      .action(async (options) => {\n        const config = await resolveCliConfig({\n          port: options.port ? Number(options.port) : undefined,\n        });\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n          user: config.databaseUser,\n          password: config.databasePassword,\n          database: config.databaseName,\n        });\n        const spinner = new Spinner('Starting PostgreSQL container');\n        spinner.start();\n        await docker.start({\n          forceRecreate: options.forceRecreate,\n          waitForReady: options.wait,\n        });\n        spinner.stop(true, 'Database ready');\n        const connectionString = await docker.getConnectionString();\n        logger.info(`Connection string: ${connectionString}`);\n      })\n  )\n  .addCommand(\n    new Command('down')\n      .description('Stop PostgreSQL container')\n      .option('--remove-volumes', 'Remove volumes (destructive)')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        await docker.stop({ removeVolumes: options.removeVolumes });\n        logger.success('Database container stopped');\n      })\n  )\n  .addCommand(\n    new Command('migrate')\n      .description('Run migrations')\n      .option('--status', 'Show status only')\n      .option('--rollback <count>', 'Rollback N migrations')\n      .option('--to <version>', 'Migrate to specific version')\n      .option('--dry-run', 'Show SQL without executing')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n\n        if (options.status) {\n          const status = await runner.getStatus();\n          status.forEach((item) => {\n            logger.info(`${item.version} ${item.name} - ${item.status}`);\n          });\n          return;\n        }\n\n        if (options.dryRun) {\n          const sql = await runner.dryRun(options.rollback ? 'down' : 'up');\n          logger.info(sql.join('\\n\\n'));\n          return;\n        }\n\n        if (options.rollback) {\n          await runner.down({ count: Number(options.rollback) });\n          logger.success('Rollback complete');\n          return;\n        }\n\n        await runner.up({ to: options.to });\n        logger.success('Migrations complete');\n      })\n  )\n  .addCommand(\n    new Command('status')\n      .description('Show database status')\n      .option('--json', 'Output JSON')\n      .option('--verbose', 'Include stats')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const docker = new DockerManager({\n          repoName: config.repoName,\n          port: config.port,\n          containerName: config.containerName,\n        });\n        const health = await docker.healthCheck();\n\n        if (options.json) {\n          console.log(JSON.stringify(health, null, 2));\n          return;\n        }\n\n        logger.info(`Container running: ${health.containerRunning}`);\n        logger.info(`Database ready: ${health.databaseReady}`);\n        if (options.verbose) {\n          const stats = await docker.getStats();\n          logger.info(`Stats: ${JSON.stringify(stats)}`);\n        }\n      })\n  )\n  .addCommand(\n    new Command('reset')\n      .description('Reset database schema')\n      .option('--confirm', 'Skip confirmation prompt')\n      .action(async (options) => {\n        if (!options.confirm) {\n          const confirmed = await confirmPrompt('This will drop and reapply all migrations. Continue?');\n          if (!confirmed) return;\n        }\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        const runner = new MigrationRunner(db);\n        await runner.reset();\n        logger.success('Database reset complete');\n      })\n  )\n  .addCommand(\n    new Command('seed')\n      .description('Seed database with sample data')\n      .option('--file <path>', 'Custom seed file')\n      .option('--clear', 'Clear before seeding')\n      .option('--count <n>', 'Number of example nodes', '10')\n      .action(async (options) => {\n        const config = await resolveCliConfig();\n        const db = new Database({\n          connectionString: buildConnectionString(config),\n        });\n        if (options.clear) {\n          await db.execute('DELETE FROM edges');\n          await db.execute('DELETE FROM nodes');\n        }\n        const count = Number(options.count ?? 10);\n        for (let i = 0; i < count; i += 1) {\n          await db.execute(\n            'INSERT INTO nodes (slug, label, node_type, domain, metadata) VALUES ($1, $2, $3, $4, $5)',\n            [`seed-${i + 1}`, `Seed Node ${i + 1}`, 'concept', 'general', {}]\n          );\n        }\n        logger.success('Seed data inserted');\n      })\n  );\n","import { Command } from 'commander';\nimport { Database } from '../../storage/database';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\nimport { EventBus } from '../../core/events/event-bus';\nimport { EmbeddingsService } from '../../core/analysis/embeddings-service';\nimport { ClusteringEngine } from '../../core/analysis/clustering-engine';\nimport { RelationshipEngine } from '../../core/analysis/relationship-engine';\nimport { AnalysisPipeline } from '../../core/analysis/pipeline';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nasync function buildPipeline(): Promise<AnalysisPipeline> {\n  const config = await resolveCliConfig();\n  const db = new Database({ connectionString: buildConnectionString(config) });\n  const events = new EventBus();\n\n  const embeddings = new EmbeddingsService(\n    {\n      openaiApiKey: process.env.OPENAI_API_KEY ?? '',\n      model: 'text-embedding-3-small',\n      batchSize: 20,\n      rateLimit: 60,\n      cacheTTL: 86400,\n      maxRetries: 3,\n    },\n    db\n  );\n\n  const clustering = new ClusteringEngine(db, embeddings);\n  const relationships = new RelationshipEngine(db, {\n    model: 'gpt-4o-mini',\n    minConfidence: 0.7,\n    maxPerNode: 10,\n    similarityThreshold: 0.75,\n    includeExisting: false,\n    batchSize: 10,\n    rateLimit: 30,\n  });\n\n  return new AnalysisPipeline(db, embeddings, clustering, relationships, events);\n}\n\nexport const analyzeCommand = new Command('analyze')\n  .description('Analysis commands')\n  .addCommand(\n    new Command('embeddings')\n      .description('Generate embeddings')\n      .option('--node-ids <ids>', 'Comma-separated node IDs')\n      .option('--force', 'Regenerate existing')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        const nodeIds = options.nodeIds ? options.nodeIds.split(',') : undefined;\n        await pipeline.runEmbeddings({ nodeIds, forceRecompute: options.force });\n        logger.success('Embeddings complete');\n      })\n  )\n  .addCommand(\n    new Command('cluster')\n      .description('Run clustering')\n      .option('--count <n>', 'Number of clusters')\n      .option('--algorithm <alg>', 'kmeans, dbscan, hierarchical', 'kmeans')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runClustering({\n          clusterCount: options.count ? Number(options.count) : undefined,\n          clusteringAlgorithm: options.algorithm,\n        });\n        logger.success('Clustering complete');\n      })\n  )\n  .addCommand(\n    new Command('relationships')\n      .description('Infer relationships')\n      .option('--threshold <n>', 'Min confidence (0-1)', '0.7')\n      .option('--dry-run', 'Show without saving')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runRelationships({\n          relationshipThreshold: Number(options.threshold),\n        });\n        logger.success('Relationship inference complete');\n      })\n  )\n  .addCommand(\n    new Command('full')\n      .description('Run full analysis pipeline')\n      .option('--force', 'Force recompute all')\n      .action(async (options) => {\n        const pipeline = await buildPipeline();\n        await pipeline.runFull({ forceRecompute: options.force });\n        logger.success('Analysis pipeline complete');\n      })\n  );\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { DockerManager } from '../../storage/docker-manager';\nimport { Database } from '../../storage/database';\nimport { MigrationRunner } from '../../storage/migrations/runner';\nimport { resolveCliConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst buildConnectionString = (config: {\n  databaseUrl?: string;\n  databaseUser?: string;\n  databasePassword?: string;\n  databaseName?: string;\n  port: number;\n}) => {\n  if (config.databaseUrl) return config.databaseUrl;\n  const user = config.databaseUser ?? 'neuron';\n  const password = config.databasePassword ?? 'neuron_dev';\n  const database = config.databaseName ?? 'neuron_web';\n  return `postgresql://${user}:${password}@localhost:${config.port}/${database}`;\n};\n\nexport const validateCommand = new Command('validate')\n  .description('Validate configuration and setup')\n  .option('--fix', 'Attempt to fix issues')\n  .option('--verbose', 'Show detailed validation')\n  .action(async (options) => {\n    const config = await resolveCliConfig();\n    let hasError = false;\n\n    const configPath = path.resolve('neuron.config.ts');\n    try {\n      await fs.access(configPath);\n      logger.success('neuron.config.ts exists');\n    } catch {\n      hasError = true;\n      logger.error('neuron.config.ts not found');\n    }\n\n    try {\n      const docker = new DockerManager({ repoName: config.repoName, port: config.port });\n      const health = await docker.healthCheck();\n      logger.info(`Docker container running: ${health.containerRunning}`);\n      logger.info(`Database ready: ${health.databaseReady}`);\n    } catch (error) {\n      hasError = true;\n      logger.error(`Docker check failed: ${String(error)}`);\n    }\n\n    try {\n      const db = new Database({ connectionString: buildConnectionString(config) });\n      await db.connect();\n      logger.success('Database connection ok');\n      const runner = new MigrationRunner(db);\n      const pending = await runner.getPending();\n      if (pending.length > 0) {\n        logger.warn(`Pending migrations: ${pending.map((m) => m.version).join(', ')}`);\n      } else {\n        logger.success('Migrations up to date');\n      }\n    } catch (error) {\n      hasError = true;\n      logger.error(`Database check failed: ${String(error)}`);\n    }\n\n    if (!process.env.OPENAI_API_KEY) {\n      logger.warn('OPENAI_API_KEY not set');\n      if (options.fix) {\n        logger.info('Set OPENAI_API_KEY in your environment to enable analysis');\n      }\n    }\n\n    if (hasError) {\n      process.exitCode = 1;\n    }\n  });\n","import { Command } from 'commander';\nimport fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { loadNeuronConfig } from '../utils/config';\nimport { logger } from '../utils/logger';\n\nconst CONFIG_FILE = path.resolve('neuron.config.ts');\n\nconst serializeConfig = (config: unknown): string => `import { defineNeuronConfig } from '@omiron33/omi-neuron-web';\\n\\nexport default defineNeuronConfig(${JSON.stringify(\n  config,\n  null,\n  2\n)});\\n`;\n\nconst getNestedValue = (obj: Record<string, unknown>, key: string): unknown => {\n  return key.split('.').reduce((acc, part) => {\n    if (acc && typeof acc === 'object' && part in acc) {\n      return (acc as Record<string, unknown>)[part];\n    }\n    return undefined;\n  }, obj as unknown);\n};\n\nconst setNestedValue = (obj: Record<string, unknown>, key: string, value: unknown): void => {\n  const parts = key.split('.');\n  let current = obj;\n  for (let i = 0; i < parts.length - 1; i += 1) {\n    const part = parts[i];\n    if (!current[part] || typeof current[part] !== 'object') {\n      current[part] = {};\n    }\n    current = current[part] as Record<string, unknown>;\n  }\n  current[parts[parts.length - 1]] = value;\n};\n\nexport const configCommand = new Command('config')\n  .description('Manage neuron.config.ts')\n  .addCommand(\n    new Command('get')\n      .argument('<key>', 'Dot path key')\n      .action(async (key) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const value = getNestedValue(config as unknown as Record<string, unknown>, key);\n        console.log(JSON.stringify(value, null, 2));\n      })\n  )\n  .addCommand(\n    new Command('set')\n      .argument('<key>', 'Dot path key')\n      .argument('<value>', 'Value (JSON)')\n      .action(async (key, value) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const parsed = JSON.parse(value);\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        setNestedValue(updated, key, parsed);\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success(`Updated ${key}`);\n      })\n  )\n  .addCommand(\n    new Command('list').action(async () => {\n      const config = await loadNeuronConfig();\n      if (!config) {\n        logger.error('neuron.config.ts not found');\n        return;\n      }\n      console.log(JSON.stringify(config, null, 2));\n    })\n  )\n  .addCommand(\n    new Command('reset')\n      .option('--section <section>', 'Section to reset')\n      .action(async (options) => {\n        const config = await loadNeuronConfig();\n        if (!config) {\n          logger.error('neuron.config.ts not found');\n          return;\n        }\n        const updated = { ...(config as unknown as Record<string, unknown>) };\n        if (options.section) {\n          delete updated[options.section];\n        } else {\n          for (const key of Object.keys(updated)) {\n            delete updated[key];\n          }\n        }\n        await fs.writeFile(CONFIG_FILE, serializeConfig(updated), 'utf8');\n        logger.success('Config reset');\n      })\n  );\n","#!/usr/bin/env node\nimport { program } from 'commander';\nimport { initCommand } from './commands/init';\nimport { dbCommand } from './commands/db';\nimport { analyzeCommand } from './commands/analyze';\nimport { validateCommand } from './commands/validate';\nimport { configCommand } from './commands/config';\n\nprogram\n  .name('omi-neuron')\n  .description('CLI for omi-neuron-web library')\n  .version('0.1.0');\n\nprogram.addCommand(initCommand);\nprogram.addCommand(dbCommand);\nprogram.addCommand(analyzeCommand);\nprogram.addCommand(validateCommand);\nprogram.addCommand(configCommand);\n\nprogram.parse();\n\n"]}