@omiron33/omi-neuron-web 0.1.0 → 0.1.2

package/dist/{chunk-XNR42GCJ.js.map → chunk-6LW4KNAU.js.map}

@@ -1 +1 @@
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* Settings Types for omi-neuron-web\n * Complete configuration schema for the library\n */\n\nimport type { ClusteringAlgorithm } from './cluster';\n\n/**\n * Embedding model options\n */\nexport type EmbeddingModel =\n  | 'text-embedding-ada-002'\n  | 'text-embedding-3-small'\n  | 'text-embedding-3-large';\n\n/**\n * Performance mode for visualization\n */\nexport type PerformanceMode = 'auto' | 'normal' | 'degraded' | 'fallback';\n\n/**\n * Node type configuration\n */\nexport interface NodeTypeConfig {\n  /** Type identifier */\n  type: string;\n  /** Human-readable label */\n  label: string;\n  /** Optional description */\n  description?: string;\n  /** Default domain for this type */\n  defaultDomain: string;\n  /** Icon name or emoji */\n  icon?: string;\n  /** Color hex code */\n  color?: string;\n  /** Custom AI prompt for analyzing this type */\n  analysisPrompt?: string;\n}\n\n/**\n * Domain configuration for visualization\n */\nexport interface DomainConfig {\n  /** Domain key */\n  key: string;\n  /** Human-readable label */\n  label: string;\n  /** Color hex code */\n  color: string;\n  /** Optional description */\n  description?: string;\n}\n\n/**\n * Relationship type configuration\n */\nexport interface RelationshipTypeConfig {\n  /** Type identifier */\n  type: string;\n  /** Human-readable label */\n  label: string;\n  /** Optional description */\n  description?: string;\n  /** Whether this type is bidirectional */\n  bidirectional: boolean;\n  /** Optional color hex code */\n  color?: string;\n}\n\n/**\n * Visualization settings - all API-modifiable\n */\nexport interface VisualizationSettings {\n  // Colors\n  /** Domain to color mapping */\n  domainColors: Record<string, string>;\n  /** Default color for unknown domains */\n  defaultDomainColor: string;\n  /** Default edge color */\n  edgeColor: string;\n  /** Active/highlighted edge color */\n  edgeActiveColor: string;\n  /** Scene background color */\n  backgroundColor: string;\n\n  // Camera\n  /** Initial camera position [x, y, z] */\n  defaultCameraPosition: [number, number, number];\n  /** Initial camera target [x, y, z] */\n  defaultCameraTarget: [number, number, number];\n  /** Minimum zoom distance */\n  minZoomDistance: number;\n  /** Maximum zoom distance */\n  maxZoomDistance: number;\n\n  // Rendering\n  /** Enable starfield background */\n  enableStarfield: boolean;\n  /** Number of stars in starfield */\n  starfieldCount: number;\n  /** Distance at which labels appear */\n  labelDistance: number;\n  /** Maximum number of visible labels */\n  maxVisibleLabels: number;\n\n  // Performance\n  /** Performance mode selection */\n  performanceMode: PerformanceMode;\n  /** Node count threshold for degraded mode */\n  nodeCountThreshold: number;\n  /** Maximum device pixel ratio */\n  pixelRatioCap: number;\n\n  // Animations\n  /** Enable animations */\n  enableAnimations: boolean;\n  /** Focus tween duration in ms */\n  focusTweenDuration: number;\n  /** Filter transition duration in ms */\n  filterTransitionDuration: number;\n\n  // Interaction\n  /** Enable hover effects */\n  enableHover: boolean;\n  /** Enable click handling */\n  enableClick: boolean;\n  /** Enable double-click handling */\n  enableDoubleClick: boolean;\n  /** Enable panning */\n  enablePan: boolean;\n  /** Enable zooming */\n  enableZoom: boolean;\n  /** Enable rotation */\n  enableRotate: boolean;\n}\n\n/**\n * Analysis settings\n */\nexport interface AnalysisSettings {\n  // Embeddings\n  /** OpenAI embedding model */\n  embeddingModel: EmbeddingModel;\n  /** Embedding dimensions (must match model) */\n  embeddingDimensions: number;\n  /** Batch size for API calls */\n  embeddingBatchSize: number;\n  /** Cache TTL in seconds */\n  embeddingCacheTTL: number;\n\n  // Clustering\n  /** Clustering algorithm */\n  clusteringAlgorithm: ClusteringAlgorithm;\n  /** Default number of clusters */\n  defaultClusterCount: number;\n  /** Minimum cluster size */\n  minClusterSize: number;\n  /** Similarity threshold for cluster assignment */\n  clusterSimilarityThreshold: number;\n\n  // Relationship inference\n  /** Model for relationship inference */\n  relationshipInferenceModel: string;\n  /** Minimum confidence to create relationship */\n  relationshipMinConfidence: number;\n  /** Maximum relationships per node */\n  relationshipMaxPerNode: number;\n\n  // Rate limiting\n  /** OpenAI requests per minute */\n  openaiRateLimit: number;\n  /** Maximum concurrent analysis jobs */\n  maxConcurrentAnalysis: number;\n}\n\n/**\n * Instance settings\n */\nexport interface InstanceSettings {\n  /** Human-readable instance name */\n  name: string;\n  /** Library version */\n  version: string;\n  /** Used for pg-{repoName} database naming */\n  repoName: string;\n}\n\n/**\n * Database settings\n */\nexport interface DatabaseSettings {\n  /** 'docker' for managed, 'external' for BYO */\n  mode: 'docker' | 'external';\n  /** Port to expose (Docker mode) */\n  port: number;\n  /** Container name override */\n  containerName?: string;\n  /** Docker image */\n  image?: string;\n  /** Database user */\n  user?: string;\n  /** Database password */\n  password?: string;\n  /** Database name */\n  database?: string;\n  /** Connection URL (external mode) */\n  url?: string;\n  /** Connection pool settings */\n  pool?: {\n    min: number;\n    max: number;\n    idleTimeoutMs: number;\n    connectionTimeoutMs: number;\n  };\n  /** Resource limits (Docker mode) */\n  resources?: {\n    memoryLimit: string;\n    cpuLimit?: string;\n  };\n}\n\n/**\n * API settings\n */\nexport interface ApiSettings {\n  /** Base path for API routes */\n  basePath: string;\n  /** Enable CORS */\n  enableCors: boolean;\n  /** Rate limiting configuration */\n  rateLimit?: {\n    windowMs: number;\n    max: number;\n  };\n}\n\n/**\n * Logging settings\n */\nexport interface LoggingSettings {\n  /** Log level */\n  level: 'debug' | 'info' | 'warn' | 'error';\n  /** Pretty print logs */\n  prettyPrint: boolean;\n}\n\n/**\n * Complete settings schema - stored in database and repo config\n */\nexport interface NeuronSettings {\n  /** Instance identification */\n  instance: InstanceSettings;\n  /** Visualization settings (API-modifiable) */\n  visualization: VisualizationSettings;\n  /** Analysis settings */\n  analysis: AnalysisSettings;\n  /** Node type configuration */\n  nodeTypes: NodeTypeConfig[];\n  /** Domain configuration */\n  domains: DomainConfig[];\n  /** Relationship type configuration */\n  relationshipTypes: RelationshipTypeConfig[];\n}\n\n/**\n * Full configuration including non-runtime settings\n */\nexport interface NeuronConfig extends NeuronSettings {\n  /** OpenAI configuration */\n  openai: {\n    apiKey: string;\n    organization?: string;\n    requestsPerMinute?: number;\n    maxRetries?: number;\n  };\n  /** Database configuration */\n  database: DatabaseSettings;\n  /** API configuration */\n  api: ApiSettings;\n  /** Logging configuration */\n  logging: LoggingSettings;\n}\n\n/**\n * Partial settings for updates\n */\nexport interface NeuronSettingsUpdate {\n  visualization?: Partial<VisualizationSettings>;\n  analysis?: Partial<AnalysisSettings>;\n  nodeTypes?: NodeTypeConfig[];\n  domains?: DomainConfig[];\n  relationshipTypes?: RelationshipTypeConfig[];\n}\n\n/**\n * Default visualization settings\n */\nexport const DEFAULT_VISUALIZATION_SETTINGS: VisualizationSettings = {\n  domainColors: {},\n  defaultDomainColor: '#c0c5ff',\n  edgeColor: '#4d4d55',\n  edgeActiveColor: '#c6d4ff',\n  backgroundColor: '#020314',\n  defaultCameraPosition: [4, 8, 20],\n  defaultCameraTarget: [0, 0, 0],\n  minZoomDistance: 4,\n  maxZoomDistance: 42,\n  enableStarfield: true,\n  starfieldCount: 1200,\n  labelDistance: 26,\n  maxVisibleLabels: 50,\n  performanceMode: 'auto',\n  nodeCountThreshold: 120,\n  pixelRatioCap: 2,\n  enableAnimations: true,\n  focusTweenDuration: 800,\n  filterTransitionDuration: 650,\n  enableHover: true,\n  enableClick: true,\n  enableDoubleClick: true,\n  enablePan: true,\n  enableZoom: true,\n  enableRotate: true,\n};\n\n/**\n * Default analysis settings\n */\nexport const DEFAULT_ANALYSIS_SETTINGS: AnalysisSettings = {\n  embeddingModel: 'text-embedding-3-small',\n  embeddingDimensions: 1536,\n  embeddingBatchSize: 20,\n  embeddingCacheTTL: 86400,\n  clusteringAlgorithm: 'kmeans',\n  defaultClusterCount: 8,\n  minClusterSize: 3,\n  clusterSimilarityThreshold: 0.75,\n  relationshipInferenceModel: 'gpt-4o-mini',\n  relationshipMinConfidence: 0.7,\n  relationshipMaxPerNode: 10,\n  openaiRateLimit: 60,\n  maxConcurrentAnalysis: 5,\n};\n\n","import slugify from 'slugify';\nimport { z } from 'zod';\n\nconst slugTransform = (label: string) =>\n  slugify(label, { lower: true, strict: true, trim: true }).slice(0, 255);\n\nexport const nodeTierSchema = z.enum(['primary', 'secondary', 'tertiary', 'insight']);\n\nexport const nodeCreateSchema = z\n  .object({\n    slug: z.string().min(1).max(255).optional(),\n    label: z.string().min(1).max(500),\n    nodeType: z.string().min(1).max(100).optional(),\n    domain: z.string().min(1).max(100).optional(),\n    summary: z.string().max(1000).optional(),\n    description: z.string().optional(),\n    content: z.string().optional(),\n    metadata: z.record(z.string(), z.unknown()).optional(),\n    tier: nodeTierSchema.optional(),\n  })\n  .transform((data) => ({\n    ...data,\n    slug: data.slug ?? slugTransform(data.label),\n  }));\n\nexport const nodeUpdateSchema = z.object({\n  label: z.string().min(1).max(500).optional(),\n  summary: z.string().max(1000).optional(),\n  description: z.string().optional(),\n  content: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n  domain: z.string().min(1).max(100).optional(),\n  tier: nodeTierSchema.optional(),\n  positionOverride: z.tuple([z.number(), z.number(), z.number()]).nullable().optional(),\n});\n\nexport const nodeBatchCreateSchema = z.object({\n  nodes: z.array(nodeCreateSchema),\n  options: z\n    .object({\n      skipDuplicates: z.boolean().optional(),\n      updateOnConflict: z.boolean().optional(),\n      autoAnalyze: z.boolean().optional(),\n      analysisDepth: z.enum(['embeddings', 'cluster', 'full']).optional(),\n    })\n    .optional(),\n});\n\nexport const nodeFilterSchema = z.object({\n  page: z.coerce.number().int().min(1).optional(),\n  limit: z.coerce.number().int().min(1).max(1000).optional(),\n  nodeType: z.union([z.string(), z.array(z.string())]).optional(),\n  domain: z.union([z.string(), z.array(z.string())]).optional(),\n  clusterId: z.string().uuid().optional(),\n  analysisStatus: z.string().optional(),\n  search: z.string().optional(),\n  sortBy: z.enum(['createdAt', 'updatedAt', 'label', 'connectionCount']).optional(),\n  sortOrder: z.enum(['asc', 'desc']).optional(),\n  includeEmbeddings: z.coerce.boolean().optional(),\n  includeStats: z.coerce.boolean().optional(),\n});\n\nexport type NodeCreateInput = z.infer<typeof nodeCreateSchema>;\nexport type NodeUpdateInput = z.infer<typeof nodeUpdateSchema>;\nexport type NodeBatchCreateInput = z.infer<typeof nodeBatchCreateSchema>;\nexport type NodeFilterInput = z.infer<typeof nodeFilterSchema>;\n","import { z } from 'zod';\n\nexport const edgeEvidenceSchema = z.object({\n  type: z.enum(['text', 'url', 'citation', 'ai_inference']),\n  content: z.string().min(1),\n  confidence: z.number().min(0).max(1).optional(),\n  sourceId: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n});\n\nexport const edgeCreateSchema = z.object({\n  fromNodeId: z.string().uuid(),\n  toNodeId: z.string().uuid(),\n  relationshipType: z.string().optional(),\n  strength: z.number().min(0).max(1).optional(),\n  confidence: z.number().min(0).max(1).optional(),\n  evidence: z.array(edgeEvidenceSchema).optional(),\n  label: z.string().max(255).optional(),\n  description: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n  bidirectional: z.boolean().optional(),\n});\n\nexport const edgeUpdateSchema = z.object({\n  strength: z.number().min(0).max(1).optional(),\n  confidence: z.number().min(0).max(1).optional(),\n  relationshipType: z.string().optional(),\n  label: z.string().max(255).optional(),\n  description: z.string().optional(),\n  evidence: z.array(edgeEvidenceSchema).optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n});\n\nexport const edgeFilterSchema = z.object({\n  page: z.coerce.number().int().min(1).optional(),\n  limit: z.coerce.number().int().min(1).max(1000).optional(),\n  fromNodeId: z.string().uuid().optional(),\n  toNodeId: z.string().uuid().optional(),\n  nodeId: z.string().uuid().optional(),\n  relationshipType: z.union([z.string(), z.array(z.string())]).optional(),\n  source: z.enum(['manual', 'ai_inferred', 'imported']).optional(),\n  minStrength: z.coerce.number().min(0).max(1).optional(),\n  minConfidence: z.coerce.number().min(0).max(1).optional(),\n});\n\nexport type EdgeEvidenceInput = z.infer<typeof edgeEvidenceSchema>;\nexport type EdgeCreateInput = z.infer<typeof edgeCreateSchema>;\nexport type EdgeUpdateInput = z.infer<typeof edgeUpdateSchema>;\nexport type EdgeFilterInput = z.infer<typeof edgeFilterSchema>;\n","import { z } from 'zod';\n\nexport const analysisOptionsSchema = z.object({\n  nodeIds: z.array(z.string().uuid()).optional(),\n  forceRecompute: z.boolean().optional(),\n  skipEmbeddings: z.boolean().optional(),\n  embeddingModel: z.string().optional(),\n  skipClustering: z.boolean().optional(),\n  clusterCount: z.coerce.number().int().min(1).optional(),\n  clusteringAlgorithm: z.enum(['kmeans', 'dbscan', 'hierarchical']).optional(),\n  skipRelationships: z.boolean().optional(),\n  relationshipThreshold: z.coerce.number().min(0).max(1).optional(),\n  maxRelationshipsPerNode: z.coerce.number().int().min(1).optional(),\n});\n\nexport const analysisRequestSchema = z.object({\n  action: z.enum(['embeddings', 'cluster', 'infer_relationships', 'full']),\n  options: analysisOptionsSchema.optional(),\n});\n\nexport type AnalysisOptionsInput = z.infer<typeof analysisOptionsSchema>;\nexport type AnalysisRequestInput = z.infer<typeof analysisRequestSchema>;\n","import { z } from 'zod';\n\nconst colorSchema = z.string().min(1);\n\nexport const nodeTypeConfigSchema = z.object({\n  type: z.string().min(1),\n  label: z.string().min(1),\n  description: z.string().optional(),\n  defaultDomain: z.string().min(1),\n  icon: z.string().optional(),\n  color: colorSchema.optional(),\n  analysisPrompt: z.string().optional(),\n});\n\nexport const domainConfigSchema = z.object({\n  key: z.string().min(1),\n  label: z.string().min(1),\n  color: colorSchema,\n  description: z.string().optional(),\n});\n\nexport const relationshipTypeConfigSchema = z.object({\n  type: z.string().min(1),\n  label: z.string().min(1),\n  description: z.string().optional(),\n  bidirectional: z.boolean(),\n  color: colorSchema.optional(),\n});\n\nexport const visualizationSettingsSchema = z.object({\n  domainColors: z.record(z.string(), colorSchema),\n  defaultDomainColor: colorSchema,\n  edgeColor: colorSchema,\n  edgeActiveColor: colorSchema,\n  backgroundColor: colorSchema,\n  defaultCameraPosition: z.tuple([z.number(), z.number(), z.number()]),\n  defaultCameraTarget: z.tuple([z.number(), z.number(), z.number()]),\n  minZoomDistance: z.number(),\n  maxZoomDistance: z.number(),\n  enableStarfield: z.boolean(),\n  starfieldCount: z.number().int().min(0),\n  labelDistance: z.number().min(0),\n  maxVisibleLabels: z.number().int().min(0),\n  performanceMode: z.enum(['auto', 'normal', 'degraded', 'fallback']),\n  nodeCountThreshold: z.number().int().min(0),\n  pixelRatioCap: z.number().min(0.5),\n  enableAnimations: z.boolean(),\n  focusTweenDuration: z.number().int().min(0),\n  filterTransitionDuration: z.number().int().min(0),\n  enableHover: z.boolean(),\n  enableClick: z.boolean(),\n  enableDoubleClick: z.boolean(),\n  enablePan: z.boolean(),\n  enableZoom: z.boolean(),\n  enableRotate: z.boolean(),\n});\n\nexport const analysisSettingsSchema = z.object({\n  embeddingModel: z.enum(['text-embedding-ada-002', 'text-embedding-3-small', 'text-embedding-3-large']),\n  embeddingDimensions: z.number().int().min(1),\n  embeddingBatchSize: z.number().int().min(1),\n  embeddingCacheTTL: z.number().int().min(0),\n  clusteringAlgorithm: z.enum(['kmeans', 'dbscan', 'hierarchical']),\n  defaultClusterCount: z.number().int().min(1),\n  minClusterSize: z.number().int().min(1),\n  clusterSimilarityThreshold: z.number().min(0).max(1),\n  relationshipInferenceModel: z.string().min(1),\n  relationshipMinConfidence: z.number().min(0).max(1),\n  relationshipMaxPerNode: z.number().int().min(1),\n  openaiRateLimit: z.number().int().min(1),\n  maxConcurrentAnalysis: z.number().int().min(1),\n});\n\nconst instanceSettingsSchema = z.object({\n  name: z.string().min(1),\n  version: z.string().min(1),\n  repoName: z.string().min(1),\n});\n\nexport const databaseSettingsSchema = z.object({\n  mode: z.enum(['docker', 'external']),\n  port: z.number().int().min(1).max(65535),\n  containerName: z.string().optional(),\n  image: z.string().optional(),\n  user: z.string().optional(),\n  password: z.string().optional(),\n  database: z.string().optional(),\n  url: z.string().optional(),\n  pool: z\n    .object({\n      min: z.number().int().min(0),\n      max: z.number().int().min(1),\n      idleTimeoutMs: z.number().int().min(0),\n      connectionTimeoutMs: z.number().int().min(0),\n    })\n    .optional(),\n  resources: z\n    .object({\n      memoryLimit: z.string().min(1),\n      cpuLimit: z.string().optional(),\n    })\n    .optional(),\n});\n\nconst apiSettingsSchema = z.object({\n  basePath: z.string().min(1),\n  enableCors: z.boolean(),\n  rateLimit: z\n    .object({\n      windowMs: z.number().int().min(1),\n      max: z.number().int().min(1),\n    })\n    .optional(),\n});\n\nconst loggingSettingsSchema = z.object({\n  level: z.enum(['debug', 'info', 'warn', 'error']),\n  prettyPrint: z.boolean(),\n});\n\nexport const neuronSettingsSchema = z.object({\n  instance: instanceSettingsSchema,\n  visualization: visualizationSettingsSchema,\n  analysis: analysisSettingsSchema,\n  nodeTypes: z.array(nodeTypeConfigSchema),\n  domains: z.array(domainConfigSchema),\n  relationshipTypes: z.array(relationshipTypeConfigSchema),\n});\n\nexport const neuronSettingsUpdateSchema = z.object({\n  visualization: visualizationSettingsSchema.partial().optional(),\n  analysis: analysisSettingsSchema.partial().optional(),\n  nodeTypes: z.array(nodeTypeConfigSchema).optional(),\n  domains: z.array(domainConfigSchema).optional(),\n  relationshipTypes: z.array(relationshipTypeConfigSchema).optional(),\n});\n\nexport const neuronConfigSchema = neuronSettingsSchema.extend({\n  openai: z.object({\n    apiKey: z.string().min(1),\n    organization: z.string().optional(),\n    requestsPerMinute: z.number().int().min(1).optional(),\n    maxRetries: z.number().int().min(0).optional(),\n  }),\n  database: databaseSettingsSchema,\n  api: apiSettingsSchema,\n  logging: loggingSettingsSchema,\n});\n\nexport type NodeTypeConfigInput = z.infer<typeof nodeTypeConfigSchema>;\nexport type DomainConfigInput = z.infer<typeof domainConfigSchema>;\nexport type RelationshipTypeConfigInput = z.infer<typeof relationshipTypeConfigSchema>;\nexport type VisualizationSettingsInput = z.infer<typeof visualizationSettingsSchema>;\nexport type AnalysisSettingsInput = z.infer<typeof analysisSettingsSchema>;\nexport type DatabaseSettingsInput = z.infer<typeof databaseSettingsSchema>;\nexport type NeuronSettingsInput = z.infer<typeof neuronSettingsSchema>;\nexport type NeuronSettingsUpdateInput = z.infer<typeof neuronSettingsUpdateSchema>;\nexport type NeuronConfigInput = z.infer<typeof neuronConfigSchema>;\n","import { z } from 'zod';\n\nexport const paginationSchema = z.object({\n  page: z.coerce.number().int().min(1).optional(),\n  limit: z.coerce.number().int().min(1).max(1000).optional(),\n});\n\nexport const listNodesParamsSchema = paginationSchema.extend({\n  nodeType: z.union([z.string(), z.array(z.string())]).optional(),\n  domain: z.union([z.string(), z.array(z.string())]).optional(),\n  clusterId: z.string().uuid().optional(),\n  analysisStatus: z.string().optional(),\n  search: z.string().optional(),\n  sortBy: z.enum(['createdAt', 'updatedAt', 'label', 'connectionCount']).optional(),\n  sortOrder: z.enum(['asc', 'desc']).optional(),\n  includeEmbeddings: z.coerce.boolean().optional(),\n  includeStats: z.coerce.boolean().optional(),\n});\n\nexport const listEdgesParamsSchema = paginationSchema.extend({\n  fromNodeId: z.string().uuid().optional(),\n  toNodeId: 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expandGraphRequestSchema = z.object({\n  fromNodeIds: z.array(z.string().uuid()),\n  depth: z.coerce.number().int().min(1),\n  direction: z.enum(['outbound', 'inbound', 'both']),\n  maxNodes: z.coerce.number().int().min(1).optional(),\n});\n\nexport const findPathRequestSchema = z.object({\n  fromNodeId: z.string().uuid(),\n  toNodeId: z.string().uuid(),\n  maxDepth: z.coerce.number().int().min(1).optional(),\n  algorithm: z.enum(['shortest', 'all']).optional(),\n});\n\nexport const semanticSearchRequestSchema = z.object({\n  query: z.string().min(1),\n  nodeTypes: z.array(z.string()).optional(),\n  domains: z.array(z.string()).optional(),\n  limit: z.coerce.number().int().min(1).optional(),\n});\n\nexport const findSimilarRequestSchema = z.object({\n  nodeId: z.string().uuid(),\n  limit: z.coerce.number().int().min(1).optional(),\n  excludeConnected: z.coerce.boolean().optional(),\n});\n\nexport type PaginationInput = z.infer<typeof paginationSchema>;\nexport type ListNodesParamsInput 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ScoringConfig = {\n  similarityWeight: 0.6,\n  connectionWeight: 0.2,\n  recencyWeight: 0.1,\n  domainBoost: 0.1,\n};\n\nexport class ScoringEngine {\n  private config: ScoringConfig;\n\n  constructor(private db: Database, config?: ScoringConfig) {\n    this.config = { ...DEFAULT_CONFIG, ...(config ?? {}) };\n  }\n\n  cosineSimilarity(a: number[], b: number[]): number {\n    let dot = 0;\n    let magA = 0;\n    let magB = 0;\n    for (let i = 0; i < a.length; i += 1) {\n      dot += a[i] * b[i];\n      magA += a[i] * a[i];\n      magB += b[i] * b[i];\n    }\n    if (magA === 0 || magB === 0) return 0;\n    return dot / (Math.sqrt(magA) * Math.sqrt(magB));\n  }\n\n  async semanticSimilarity(nodeA: string, nodeB: string): Promise<number> {\n    const rows = await this.db.query<{ similarity: number }>(\n      'SELECT 1 - (a.embedding <=> b.embedding) as similarity FROM nodes a JOIN nodes b ON b.id = $2 WHERE a.id = $1',\n      [nodeA, nodeB]\n    );\n    return rows[0]?.similarity ?? 0;\n  }\n\n  async scoreForQuery(queryEmbedding: number[], nodeIds?: string[]): Promise<ScoredNode[]> {\n    const filterClause = nodeIds?.length ? 'AND id = ANY($2)' : '';\n    const values = nodeIds?.length ? [queryEmbedding, nodeIds] : [queryEmbedding];\n    const nodes = await this.db.query<NeuronNode & { similarity: number }>(\n      `SELECT *, 1 - (embedding <=> $1) as similarity FROM nodes WHERE embedding IS NOT NULL ${filterClause} ORDER BY embedding <=> $1`,\n      values\n    );\n\n    return nodes.map((node) => this.applyScoring(node, node.similarity ?? 0));\n  }\n\n  async findSimilar(nodeId: string, limit = 10, excludeConnected = false): Promise<ScoredNode[]> {\n    const base = excludeConnected\n      ? `SELECT id FROM nodes WHERE id NOT IN (SELECT to_node_id FROM edges WHERE from_node_id = $1)`\n      : `SELECT id FROM nodes WHERE id != $1`;\n    const nodes = await this.db.query<NeuronNode & { similarity: number }>(\n      `SELECT n.*, 1 - (n.embedding <=> (SELECT embedding FROM nodes WHERE id = $1)) as similarity\n       FROM nodes n\n       WHERE n.embedding IS NOT NULL AND n.id IN (${base})\n       ORDER BY n.embedding <=> (SELECT embedding FROM nodes WHERE id = $1)\n       LIMIT $2`,\n      [nodeId, limit]\n    );\n\n    return nodes.map((node) => this.applyScoring(node, node.similarity ?? 0));\n  }\n\n  async calculateNodeImportance(nodeId: string): Promise<number> {\n    const row = await this.db.queryOne<{ importance: number }>(\n      `WITH edge_weights AS (\n        SELECT to_node_id, SUM(strength) as total_inbound\n        FROM edges\n        GROUP BY to_node_id\n      )\n      SELECT COALESCE(ew.total_inbound, 0) + (n.connection_count * 0.1) as importance\n      FROM nodes n\n      LEFT JOIN edge_weights ew ON n.id = ew.to_node_id\n      WHERE n.id = $1`,\n      [nodeId]\n    );\n    return row?.importance ?? 0;\n  }\n\n  async rankAllNodes(): Promise<Array<{ nodeId: string; importance: number }>> {\n    const rows = await this.db.query<{ id: string; importance: number }>(\n      `WITH edge_weights AS (\n        SELECT to_node_id, SUM(strength) as total_inbound\n        FROM edges\n        GROUP BY to_node_id\n      )\n      SELECT n.id, COALESCE(ew.total_inbound, 0) + (n.connection_count * 0.1) as importance\n      FROM nodes n\n      LEFT JOIN edge_weights ew ON n.id = ew.to_node_id\n      ORDER BY importance DESC`\n    );\n    return rows.map((row) => ({ nodeId: row.id, importance: row.importance }));\n  }\n\n  async scoreRelevance(\n    sourceNodeId: string,\n    candidateNodeIds: string[],\n    context?: string\n  ): Promise<ScoredNode[]> {\n    const nodes = await this.db.query<NeuronNode & { similarity: number }>(\n      `SELECT *, 1 - (embedding <=> (SELECT embedding FROM nodes WHERE id = $1)) as similarity\n       FROM nodes\n       WHERE embedding IS NOT NULL AND id = ANY($2)\n       ORDER BY embedding <=> (SELECT embedding FROM nodes WHERE id = $1)`,\n      [sourceNodeId, candidateNodeIds]\n    );\n\n    return nodes.map((node) => {\n      const base = this.applyScoring(node, node.similarity ?? 0);\n      if (context) {\n        base.score += this.config.domainBoost * 0.1;\n      }\n      return base;\n    });\n  }\n\n  private applyScoring(node: NeuronNode & { similarity?: number }, similarity: number): ScoredNode {\n    const connections = node.connectionCount ?? 0;\n    const recency = node.updatedAt ? Math.max(0, 1 - (Date.now() - new Date(node.updatedAt).getTime()) / (1000 * 60 * 60 * 24 * 30)) : 0;\n    const domainMatch = 0;\n\n    const score =\n      similarity * this.config.similarityWeight +\n      connections * this.config.connectionWeight +\n      recency * this.config.recencyWeight +\n      domainMatch * this.config.domainBoost;\n\n    return {\n      node,\n      score,\n      breakdown: {\n        similarity,\n        connections,\n        recency,\n        domainMatch,\n      },\n    };\n  }\n}\n","import type { NeuronConfig } from '../core/types/settings';\nimport { Database, type DatabaseConfig } from './database';\n\nlet singleton: Database | null = null;\n\nexport function createDatabase(config: NeuronConfig): Database {\n  const dbConfig: DatabaseConfig = {\n    connectionString: config.database.url,\n    host: config.database.mode === 'docker' ? 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Number(process.env.DB_PORT) : undefined,\n    user: process.env.DB_USER,\n    password: process.env.DB_PASSWORD,\n    database: process.env.DB_NAME,\n  };\n\n  return new Database(dbConfig);\n}\n\nexport function getDatabase(config?: DatabaseConfig): Database {\n  if (!singleton) {\n    singleton = new Database(config ?? {});\n  }\n\n  return singleton;\n}\n\nexport function resetDatabaseSingleton(): void {\n  singleton = null;\n}\n","export type WhereClause = Record<string, unknown>;\n\nexport interface SelectOptions {\n  limit?: number;\n  offset?: number;\n  orderBy?: string;\n  orderDirection?: 'asc' | 'desc';\n}\n\nexport const buildWhereClause = (where?: WhereClause, startIndex = 1) => {\n  if (!where || Object.keys(where).length === 0) {\n    return { clause: '', values: [], nextIndex: startIndex };\n  }\n\n  const keys = Object.keys(where);\n  const values: unknown[] = [];\n  const conditions = keys.map((key, idx) => {\n    values.push(where[key]);\n    return `${key} = $${startIndex + idx}`;\n  });\n\n  return {\n    clause: `WHERE ${conditions.join(' AND ')}`,\n    values,\n    nextIndex: startIndex + keys.length,\n  };\n};\n\nexport const buildInsert = (table: string, data: Record<string, unknown>) => {\n  const keys = Object.keys(data);\n  const values = Object.values(data);\n  const columns = keys.map((key) => `\"${key}\"`).join(', ');\n  const placeholders = keys.map((_, idx) => `$${idx + 1}`).join(', ');\n\n  return {\n    sql: `INSERT INTO ${table} (${columns}) VALUES (${placeholders}) RETURNING *`,\n    values,\n  };\n};\n\nexport const buildUpdate = (\n  table: string,\n  data: Record<string, unknown>,\n  where: WhereClause\n) => {\n  const keys = Object.keys(data);\n  const values = Object.values(data);\n  const setClause = keys.map((key, idx) => `\"${key}\" = $${idx + 1}`).join(', ');\n\n  const whereResult = buildWhereClause(where, keys.length + 1);\n\n  return {\n    sql: `UPDATE ${table} SET ${setClause} ${whereResult.clause} RETURNING *`,\n    values: [...values, ...whereResult.values],\n  };\n};\n\nexport const buildSelect = (\n  table: string,\n  columns: string[] | '*',\n  where?: WhereClause,\n  options?: SelectOptions\n) => {\n  const columnList = columns === '*' ? 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* Settings Types for omi-neuron-web\n * Complete configuration schema for the library\n */\n\nimport type { ClusteringAlgorithm } from './cluster';\n\n/**\n * Embedding model options\n */\nexport type EmbeddingModel =\n  | 'text-embedding-ada-002'\n  | 'text-embedding-3-small'\n  | 'text-embedding-3-large';\n\n/**\n * Performance mode for visualization\n */\nexport type PerformanceMode = 'auto' | 'normal' | 'degraded' | 'fallback';\n\n/**\n * Node type configuration\n */\nexport interface NodeTypeConfig {\n  /** Type identifier */\n  type: string;\n  /** Human-readable label */\n  label: string;\n  /** Optional description */\n  description?: string;\n  /** Default domain for this type */\n  defaultDomain: string;\n  /** Icon name or emoji */\n  icon?: string;\n  /** Color hex code */\n  color?: string;\n  /** Custom AI prompt for analyzing this type */\n  analysisPrompt?: string;\n}\n\n/**\n * Domain configuration for visualization\n */\nexport interface DomainConfig {\n  /** Domain key */\n  key: string;\n  /** Human-readable label */\n  label: string;\n  /** Color hex code */\n  color: string;\n  /** Optional description */\n  description?: string;\n}\n\n/**\n * Relationship type configuration\n */\nexport interface RelationshipTypeConfig {\n  /** Type identifier */\n  type: string;\n  /** Human-readable label */\n  label: string;\n  /** Optional description */\n  description?: string;\n  /** Whether this type is bidirectional */\n  bidirectional: boolean;\n  /** Optional color hex code */\n  color?: string;\n}\n\n/**\n * Visualization settings - all API-modifiable\n */\nexport interface VisualizationSettings {\n  // Colors\n  /** Domain to color mapping */\n  domainColors: Record<string, string>;\n  /** Default color for unknown domains */\n  defaultDomainColor: string;\n  /** Default edge color */\n  edgeColor: string;\n  /** Active/highlighted edge color */\n  edgeActiveColor: string;\n  /** Scene background color */\n  backgroundColor: string;\n\n  // Camera\n  /** Initial camera position [x, y, z] */\n  defaultCameraPosition: [number, number, number];\n  /** Initial camera target [x, y, z] */\n  defaultCameraTarget: [number, number, number];\n  /** Minimum zoom distance */\n  minZoomDistance: number;\n  /** Maximum zoom distance */\n  maxZoomDistance: number;\n\n  // Rendering\n  /** Enable starfield background */\n  enableStarfield: boolean;\n  /** Number of stars in starfield */\n  starfieldCount: number;\n  /** Distance at which labels appear */\n  labelDistance: number;\n  /** Maximum number of visible labels */\n  maxVisibleLabels: number;\n\n  // Performance\n  /** Performance mode selection */\n  performanceMode: PerformanceMode;\n  /** Node count threshold for degraded mode */\n  nodeCountThreshold: number;\n  /** Maximum device pixel ratio */\n  pixelRatioCap: number;\n\n  // Animations\n  /** Enable animations */\n  enableAnimations: boolean;\n  /** Focus tween duration in ms */\n  focusTweenDuration: number;\n  /** Filter transition duration in ms */\n  filterTransitionDuration: number;\n\n  // Interaction\n  /** Enable hover effects */\n  enableHover: boolean;\n  /** Enable click handling */\n  enableClick: boolean;\n  /** Enable double-click handling */\n  enableDoubleClick: boolean;\n  /** Enable panning */\n  enablePan: boolean;\n  /** Enable zooming */\n  enableZoom: boolean;\n  /** Enable rotation */\n  enableRotate: boolean;\n}\n\n/**\n * Analysis settings\n */\nexport interface AnalysisSettings {\n  // Embeddings\n  /** OpenAI embedding model */\n  embeddingModel: EmbeddingModel;\n  /** Embedding dimensions (must match model) */\n  embeddingDimensions: number;\n  /** Batch size for API calls */\n  embeddingBatchSize: number;\n  /** Cache TTL in seconds */\n  embeddingCacheTTL: number;\n\n  // Clustering\n  /** Clustering algorithm */\n  clusteringAlgorithm: ClusteringAlgorithm;\n  /** Default number of clusters */\n  defaultClusterCount: number;\n  /** Minimum cluster size */\n  minClusterSize: number;\n  /** Similarity threshold for cluster assignment */\n  clusterSimilarityThreshold: number;\n\n  // Relationship inference\n  /** Model for relationship inference */\n  relationshipInferenceModel: string;\n  /** Minimum confidence to create relationship */\n  relationshipMinConfidence: number;\n  /** Maximum relationships per node */\n  relationshipMaxPerNode: number;\n\n  // Rate limiting\n  /** OpenAI requests per minute */\n  openaiRateLimit: number;\n  /** Maximum concurrent analysis jobs */\n  maxConcurrentAnalysis: number;\n}\n\n/**\n * Instance settings\n */\nexport interface InstanceSettings {\n  /** Human-readable instance name */\n  name: string;\n  /** Library version */\n  version: string;\n  /** Used for pg-{repoName} database naming */\n  repoName: string;\n}\n\n/**\n * Database settings\n */\nexport interface DatabaseSettings {\n  /** 'docker' for managed, 'external' for BYO */\n  mode: 'docker' | 'external';\n  /** Port to expose (Docker mode) */\n  port: number;\n  /** Container name override */\n  containerName?: string;\n  /** Docker image */\n  image?: string;\n  /** Database user */\n  user?: string;\n  /** Database password */\n  password?: string;\n  /** Database name */\n  database?: string;\n  /** Connection URL (external mode) */\n  url?: string;\n  /** Connection pool settings */\n  pool?: {\n    min: number;\n    max: number;\n    idleTimeoutMs: number;\n    connectionTimeoutMs: number;\n  };\n  /** Resource limits (Docker mode) */\n  resources?: {\n    memoryLimit: string;\n    cpuLimit?: string;\n  };\n}\n\n/**\n * API settings\n */\nexport interface ApiSettings {\n  /** Base path for API routes */\n  basePath: string;\n  /** Enable CORS */\n  enableCors: boolean;\n  /** Rate limiting configuration */\n  rateLimit?: {\n    windowMs: number;\n    max: number;\n  };\n}\n\n/**\n * Logging settings\n */\nexport interface LoggingSettings {\n  /** Log level */\n  level: 'debug' | 'info' | 'warn' | 'error';\n  /** Pretty print logs */\n  prettyPrint: boolean;\n}\n\n/**\n * Complete settings schema - stored in database and repo config\n */\nexport interface NeuronSettings {\n  /** Instance identification */\n  instance: InstanceSettings;\n  /** Visualization settings (API-modifiable) */\n  visualization: VisualizationSettings;\n  /** Analysis settings */\n  analysis: AnalysisSettings;\n  /** Node type configuration */\n  nodeTypes: NodeTypeConfig[];\n  /** Domain configuration */\n  domains: DomainConfig[];\n  /** Relationship type configuration */\n  relationshipTypes: RelationshipTypeConfig[];\n}\n\n/**\n * Full configuration including non-runtime settings\n */\nexport interface NeuronConfig extends NeuronSettings {\n  /** OpenAI configuration */\n  openai: {\n    apiKey: string;\n    organization?: string;\n    requestsPerMinute?: number;\n    maxRetries?: number;\n  };\n  /** Database configuration */\n  database: DatabaseSettings;\n  /** API configuration */\n  api: ApiSettings;\n  /** Logging configuration */\n  logging: LoggingSettings;\n}\n\n/**\n * Partial settings for updates\n */\nexport interface NeuronSettingsUpdate {\n  visualization?: Partial<VisualizationSettings>;\n  analysis?: Partial<AnalysisSettings>;\n  nodeTypes?: NodeTypeConfig[];\n  domains?: DomainConfig[];\n  relationshipTypes?: RelationshipTypeConfig[];\n}\n\n/**\n * Default visualization settings\n */\nexport const DEFAULT_VISUALIZATION_SETTINGS: VisualizationSettings = {\n  domainColors: {},\n  defaultDomainColor: '#c0c5ff',\n  edgeColor: '#4d4d55',\n  edgeActiveColor: '#c6d4ff',\n  backgroundColor: '#020314',\n  defaultCameraPosition: [4, 8, 20],\n  defaultCameraTarget: [0, 0, 0],\n  minZoomDistance: 4,\n  maxZoomDistance: 42,\n  enableStarfield: true,\n  starfieldCount: 1200,\n  labelDistance: 26,\n  maxVisibleLabels: 50,\n  performanceMode: 'auto',\n  nodeCountThreshold: 120,\n  pixelRatioCap: 2,\n  enableAnimations: true,\n  focusTweenDuration: 800,\n  filterTransitionDuration: 650,\n  enableHover: true,\n  enableClick: true,\n  enableDoubleClick: true,\n  enablePan: true,\n  enableZoom: true,\n  enableRotate: true,\n};\n\n/**\n * Default analysis settings\n */\nexport const DEFAULT_ANALYSIS_SETTINGS: AnalysisSettings = {\n  embeddingModel: 'text-embedding-3-small',\n  embeddingDimensions: 1536,\n  embeddingBatchSize: 20,\n  embeddingCacheTTL: 86400,\n  clusteringAlgorithm: 'kmeans',\n  defaultClusterCount: 8,\n  minClusterSize: 3,\n  clusterSimilarityThreshold: 0.75,\n  relationshipInferenceModel: 'gpt-4o-mini',\n  relationshipMinConfidence: 0.7,\n  relationshipMaxPerNode: 10,\n  openaiRateLimit: 60,\n  maxConcurrentAnalysis: 5,\n};\n\n\n","import slugify from 'slugify';\nimport { z } from 'zod';\n\nconst slugTransform = (label: string) =>\n  slugify(label, { lower: true, strict: true, trim: true }).slice(0, 255);\n\nexport const nodeTierSchema = z.enum(['primary', 'secondary', 'tertiary', 'insight']);\n\nexport const nodeCreateSchema = z\n  .object({\n    slug: z.string().min(1).max(255).optional(),\n    label: z.string().min(1).max(500),\n    nodeType: z.string().min(1).max(100).optional(),\n    domain: z.string().min(1).max(100).optional(),\n    summary: z.string().max(1000).optional(),\n    description: z.string().optional(),\n    content: z.string().optional(),\n    metadata: z.record(z.string(), z.unknown()).optional(),\n    tier: nodeTierSchema.optional(),\n  })\n  .transform((data) => ({\n    ...data,\n    slug: data.slug ?? slugTransform(data.label),\n  }));\n\nexport const nodeUpdateSchema = z.object({\n  label: z.string().min(1).max(500).optional(),\n  summary: z.string().max(1000).optional(),\n  description: z.string().optional(),\n  content: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n  domain: z.string().min(1).max(100).optional(),\n  tier: nodeTierSchema.optional(),\n  positionOverride: z.tuple([z.number(), z.number(), z.number()]).nullable().optional(),\n});\n\nexport const nodeBatchCreateSchema = z.object({\n  nodes: z.array(nodeCreateSchema),\n  options: z\n    .object({\n      skipDuplicates: z.boolean().optional(),\n      updateOnConflict: z.boolean().optional(),\n      autoAnalyze: z.boolean().optional(),\n      analysisDepth: z.enum(['embeddings', 'cluster', 'full']).optional(),\n    })\n    .optional(),\n});\n\nexport const nodeFilterSchema = z.object({\n  page: z.coerce.number().int().min(1).optional(),\n  limit: z.coerce.number().int().min(1).max(1000).optional(),\n  nodeType: z.union([z.string(), z.array(z.string())]).optional(),\n  domain: z.union([z.string(), z.array(z.string())]).optional(),\n  clusterId: z.string().uuid().optional(),\n  analysisStatus: z.string().optional(),\n  search: z.string().optional(),\n  sortBy: z.enum(['createdAt', 'updatedAt', 'label', 'connectionCount']).optional(),\n  sortOrder: z.enum(['asc', 'desc']).optional(),\n  includeEmbeddings: z.coerce.boolean().optional(),\n  includeStats: z.coerce.boolean().optional(),\n});\n\nexport type NodeCreateInput = z.infer<typeof nodeCreateSchema>;\nexport type NodeUpdateInput = z.infer<typeof nodeUpdateSchema>;\nexport type NodeBatchCreateInput = z.infer<typeof nodeBatchCreateSchema>;\nexport type NodeFilterInput = z.infer<typeof nodeFilterSchema>;\n","import { z } from 'zod';\n\nexport const edgeEvidenceSchema = z.object({\n  type: z.enum(['text', 'url', 'citation', 'ai_inference']),\n  content: z.string().min(1),\n  confidence: z.number().min(0).max(1).optional(),\n  sourceId: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n});\n\nexport const edgeCreateSchema = z.object({\n  fromNodeId: z.string().uuid(),\n  toNodeId: z.string().uuid(),\n  relationshipType: z.string().optional(),\n  strength: z.number().min(0).max(1).optional(),\n  confidence: z.number().min(0).max(1).optional(),\n  evidence: z.array(edgeEvidenceSchema).optional(),\n  label: z.string().max(255).optional(),\n  description: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n  bidirectional: z.boolean().optional(),\n});\n\nexport const edgeUpdateSchema = z.object({\n  strength: z.number().min(0).max(1).optional(),\n  confidence: z.number().min(0).max(1).optional(),\n  relationshipType: z.string().optional(),\n  label: z.string().max(255).optional(),\n  description: z.string().optional(),\n  evidence: z.array(edgeEvidenceSchema).optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n});\n\nexport const edgeFilterSchema = z.object({\n  page: z.coerce.number().int().min(1).optional(),\n  limit: z.coerce.number().int().min(1).max(1000).optional(),\n  fromNodeId: z.string().uuid().optional(),\n  toNodeId: z.string().uuid().optional(),\n  nodeId: z.string().uuid().optional(),\n  relationshipType: z.union([z.string(), z.array(z.string())]).optional(),\n  source: z.enum(['manual', 'ai_inferred', 'imported']).optional(),\n  minStrength: z.coerce.number().min(0).max(1).optional(),\n  minConfidence: z.coerce.number().min(0).max(1).optional(),\n});\n\nexport type EdgeEvidenceInput = z.infer<typeof edgeEvidenceSchema>;\nexport type EdgeCreateInput = z.infer<typeof edgeCreateSchema>;\nexport type EdgeUpdateInput = z.infer<typeof edgeUpdateSchema>;\nexport type EdgeFilterInput = z.infer<typeof edgeFilterSchema>;\n","import { z } from 'zod';\n\nexport const analysisOptionsSchema = z.object({\n  nodeIds: z.array(z.string().uuid()).optional(),\n  forceRecompute: z.boolean().optional(),\n  skipEmbeddings: z.boolean().optional(),\n  embeddingModel: z.string().optional(),\n  skipClustering: z.boolean().optional(),\n  clusterCount: z.coerce.number().int().min(1).optional(),\n  clusteringAlgorithm: z.enum(['kmeans', 'dbscan', 'hierarchical']).optional(),\n  skipRelationships: z.boolean().optional(),\n  relationshipThreshold: z.coerce.number().min(0).max(1).optional(),\n  maxRelationshipsPerNode: z.coerce.number().int().min(1).optional(),\n});\n\nexport const analysisRequestSchema = z.object({\n  action: z.enum(['embeddings', 'cluster', 'infer_relationships', 'full']),\n  options: analysisOptionsSchema.optional(),\n});\n\nexport type AnalysisOptionsInput = z.infer<typeof analysisOptionsSchema>;\nexport type AnalysisRequestInput = z.infer<typeof analysisRequestSchema>;\n","import { z } from 'zod';\n\nconst colorSchema = z.string().min(1);\n\nexport const nodeTypeConfigSchema = z.object({\n  type: z.string().min(1),\n  label: z.string().min(1),\n  description: z.string().optional(),\n  defaultDomain: z.string().min(1),\n  icon: z.string().optional(),\n  color: colorSchema.optional(),\n  analysisPrompt: z.string().optional(),\n});\n\nexport const domainConfigSchema = z.object({\n  key: z.string().min(1),\n  label: z.string().min(1),\n  color: colorSchema,\n  description: z.string().optional(),\n});\n\nexport const relationshipTypeConfigSchema = z.object({\n  type: z.string().min(1),\n  label: z.string().min(1),\n  description: z.string().optional(),\n  bidirectional: z.boolean(),\n  color: colorSchema.optional(),\n});\n\nexport const visualizationSettingsSchema = z.object({\n  domainColors: z.record(z.string(), colorSchema),\n  defaultDomainColor: colorSchema,\n  edgeColor: colorSchema,\n  edgeActiveColor: colorSchema,\n  backgroundColor: colorSchema,\n  defaultCameraPosition: z.tuple([z.number(), z.number(), z.number()]),\n  defaultCameraTarget: z.tuple([z.number(), z.number(), z.number()]),\n  minZoomDistance: z.number(),\n  maxZoomDistance: z.number(),\n  enableStarfield: z.boolean(),\n  starfieldCount: z.number().int().min(0),\n  labelDistance: z.number().min(0),\n  maxVisibleLabels: z.number().int().min(0),\n  performanceMode: z.enum(['auto', 'normal', 'degraded', 'fallback']),\n  nodeCountThreshold: z.number().int().min(0),\n  pixelRatioCap: z.number().min(0.5),\n  enableAnimations: z.boolean(),\n  focusTweenDuration: z.number().int().min(0),\n  filterTransitionDuration: z.number().int().min(0),\n  enableHover: z.boolean(),\n  enableClick: z.boolean(),\n  enableDoubleClick: z.boolean(),\n  enablePan: z.boolean(),\n  enableZoom: z.boolean(),\n  enableRotate: z.boolean(),\n});\n\nexport const analysisSettingsSchema = z.object({\n  embeddingModel: z.enum(['text-embedding-ada-002', 'text-embedding-3-small', 'text-embedding-3-large']),\n  embeddingDimensions: z.number().int().min(1),\n  embeddingBatchSize: z.number().int().min(1),\n  embeddingCacheTTL: z.number().int().min(0),\n  clusteringAlgorithm: z.enum(['kmeans', 'dbscan', 'hierarchical']),\n  defaultClusterCount: z.number().int().min(1),\n  minClusterSize: z.number().int().min(1),\n  clusterSimilarityThreshold: z.number().min(0).max(1),\n  relationshipInferenceModel: z.string().min(1),\n  relationshipMinConfidence: z.number().min(0).max(1),\n  relationshipMaxPerNode: z.number().int().min(1),\n  openaiRateLimit: z.number().int().min(1),\n  maxConcurrentAnalysis: z.number().int().min(1),\n});\n\nconst instanceSettingsSchema = z.object({\n  name: z.string().min(1),\n  version: z.string().min(1),\n  repoName: z.string().min(1),\n});\n\nexport const databaseSettingsSchema = z.object({\n  mode: z.enum(['docker', 'external']),\n  port: z.number().int().min(1).max(65535),\n  containerName: z.string().optional(),\n  image: z.string().optional(),\n  user: z.string().optional(),\n  password: z.string().optional(),\n  database: z.string().optional(),\n  url: z.string().optional(),\n  pool: z\n    .object({\n      min: z.number().int().min(0),\n      max: z.number().int().min(1),\n      idleTimeoutMs: z.number().int().min(0),\n      connectionTimeoutMs: z.number().int().min(0),\n    })\n    .optional(),\n  resources: z\n    .object({\n      memoryLimit: z.string().min(1),\n      cpuLimit: z.string().optional(),\n    })\n    .optional(),\n});\n\nconst apiSettingsSchema = z.object({\n  basePath: z.string().min(1),\n  enableCors: z.boolean(),\n  rateLimit: z\n    .object({\n      windowMs: z.number().int().min(1),\n      max: z.number().int().min(1),\n    })\n    .optional(),\n});\n\nconst loggingSettingsSchema = z.object({\n  level: z.enum(['debug', 'info', 'warn', 'error']),\n  prettyPrint: z.boolean(),\n});\n\nexport const neuronSettingsSchema = z.object({\n  instance: instanceSettingsSchema,\n  visualization: visualizationSettingsSchema,\n  analysis: analysisSettingsSchema,\n  nodeTypes: z.array(nodeTypeConfigSchema),\n  domains: z.array(domainConfigSchema),\n  relationshipTypes: z.array(relationshipTypeConfigSchema),\n});\n\nexport const neuronSettingsUpdateSchema = z.object({\n  visualization: visualizationSettingsSchema.partial().optional(),\n  analysis: analysisSettingsSchema.partial().optional(),\n  nodeTypes: z.array(nodeTypeConfigSchema).optional(),\n  domains: z.array(domainConfigSchema).optional(),\n  relationshipTypes: z.array(relationshipTypeConfigSchema).optional(),\n});\n\nexport const neuronConfigSchema = neuronSettingsSchema.extend({\n  openai: z.object({\n    apiKey: z.string().min(1),\n    organization: z.string().optional(),\n    requestsPerMinute: z.number().int().min(1).optional(),\n    maxRetries: z.number().int().min(0).optional(),\n  }),\n  database: databaseSettingsSchema,\n  api: apiSettingsSchema,\n  logging: loggingSettingsSchema,\n});\n\nexport type NodeTypeConfigInput = z.infer<typeof nodeTypeConfigSchema>;\nexport type DomainConfigInput = z.infer<typeof domainConfigSchema>;\nexport type RelationshipTypeConfigInput = z.infer<typeof relationshipTypeConfigSchema>;\nexport type VisualizationSettingsInput = z.infer<typeof visualizationSettingsSchema>;\nexport type AnalysisSettingsInput = z.infer<typeof analysisSettingsSchema>;\nexport type DatabaseSettingsInput = z.infer<typeof databaseSettingsSchema>;\nexport type NeuronSettingsInput = z.infer<typeof neuronSettingsSchema>;\nexport type NeuronSettingsUpdateInput = z.infer<typeof neuronSettingsUpdateSchema>;\nexport type NeuronConfigInput = z.infer<typeof neuronConfigSchema>;\n","import { z } from 'zod';\n\nexport const paginationSchema = z.object({\n  page: z.coerce.number().int().min(1).optional(),\n  limit: z.coerce.number().int().min(1).max(1000).optional(),\n});\n\nexport const listNodesParamsSchema = paginationSchema.extend({\n  nodeType: z.union([z.string(), z.array(z.string())]).optional(),\n  domain: z.union([z.string(), z.array(z.string())]).optional(),\n  clusterId: z.string().uuid().optional(),\n  analysisStatus: z.string().optional(),\n  search: z.string().optional(),\n  sortBy: z.enum(['createdAt', 'updatedAt', 'label', 'connectionCount']).optional(),\n  sortOrder: z.enum(['asc', 'desc']).optional(),\n  includeEmbeddings: z.coerce.boolean().optional(),\n  includeStats: z.coerce.boolean().optional(),\n});\n\nexport const listEdgesParamsSchema = paginationSchema.extend({\n  fromNodeId: z.string().uuid().optional(),\n  toNodeId: z.string().uuid().optional(),\n  nodeId: z.string().uuid().optional(),\n  relationshipType: z.union([z.string(), z.array(z.string())]).optional(),\n  source: z.enum(['manual', 'ai_inferred', 'imported']).optional(),\n  minStrength: z.coerce.number().min(0).max(1).optional(),\n  minConfidence: z.coerce.number().min(0).max(1).optional(),\n});\n\nexport const getGraphParamsSchema = z.object({\n  nodeTypes: z.union([z.string(), z.array(z.string())]).optional(),\n  domains: z.union([z.string(), z.array(z.string())]).optional(),\n  clusterIds: z.union([z.string(), z.array(z.string())]).optional(),\n  nodeIds: z.union([z.string(), z.array(z.string())]).optional(),\n  depth: z.coerce.number().int().min(1).optional(),\n  minEdgeStrength: z.coerce.number().min(0).max(1).optional(),\n  relationshipTypes: z.union([z.string(), z.array(z.string())]).optional(),\n  maxNodes: z.coerce.number().int().min(1).optional(),\n  includeOrphanNodes: z.coerce.boolean().optional(),\n});\n\nexport const expandGraphRequestSchema = z.object({\n  fromNodeIds: z.array(z.string().uuid()),\n  depth: z.coerce.number().int().min(1),\n  direction: z.enum(['outbound', 'inbound', 'both']),\n  maxNodes: z.coerce.number().int().min(1).optional(),\n});\n\nexport const findPathRequestSchema = z.object({\n  fromNodeId: z.string().uuid(),\n  toNodeId: z.string().uuid(),\n  maxDepth: z.coerce.number().int().min(1).optional(),\n  algorithm: z.enum(['shortest', 'all']).optional(),\n});\n\nexport const semanticSearchRequestSchema = z.object({\n  query: z.string().min(1),\n  nodeTypes: z.array(z.string()).optional(),\n  domains: z.array(z.string()).optional(),\n  limit: z.coerce.number().int().min(1).optional(),\n});\n\nexport const findSimilarRequestSchema = z.object({\n  nodeId: z.string().uuid(),\n  limit: z.coerce.number().int().min(1).optional(),\n  excludeConnected: z.coerce.boolean().optional(),\n});\n\nexport type PaginationInput = z.infer<typeof paginationSchema>;\nexport type ListNodesParamsInput = z.infer<typeof listNodesParamsSchema>;\nexport type ListEdgesParamsInput = z.infer<typeof listEdgesParamsSchema>;\nexport type GetGraphParamsInput = z.infer<typeof getGraphParamsSchema>;\nexport type ExpandGraphRequestInput = z.infer<typeof expandGraphRequestSchema>;\nexport type FindPathRequestInput = z.infer<typeof findPathRequestSchema>;\nexport type SemanticSearchRequestInput = z.infer<typeof semanticSearchRequestSchema>;\nexport type FindSimilarRequestInput = z.infer<typeof findSimilarRequestSchema>;\n","import type { Database } from '../../storage/database';\nimport type { NeuronNode } from '../types/node';\n\nexport interface ScoringConfig {\n  similarityWeight: number;\n  connectionWeight: number;\n  recencyWeight: number;\n  domainBoost: number;\n}\n\nexport interface ScoredNode {\n  node: NeuronNode;\n  score: number;\n  breakdown: {\n    similarity: number;\n    connections: number;\n    recency: number;\n    domainMatch: number;\n  };\n}\n\nconst DEFAULT_CONFIG: ScoringConfig = {\n  similarityWeight: 0.6,\n  connectionWeight: 0.2,\n  recencyWeight: 0.1,\n  domainBoost: 0.1,\n};\n\nexport class ScoringEngine {\n  private config: ScoringConfig;\n\n  constructor(private db: Database, config?: ScoringConfig) {\n    this.config = { ...DEFAULT_CONFIG, ...(config ?? {}) };\n  }\n\n  cosineSimilarity(a: number[], b: number[]): number {\n    let dot = 0;\n    let magA = 0;\n    let magB = 0;\n    for (let i = 0; i < a.length; i += 1) {\n      dot += a[i] * b[i];\n      magA += a[i] * a[i];\n      magB += b[i] * b[i];\n    }\n    if (magA === 0 || magB === 0) return 0;\n    return dot / (Math.sqrt(magA) * Math.sqrt(magB));\n  }\n\n  async semanticSimilarity(nodeA: string, nodeB: string): Promise<number> {\n    const rows = await this.db.query<{ similarity: number }>(\n      'SELECT 1 - (a.embedding <=> b.embedding) as similarity FROM nodes a JOIN nodes b ON b.id = $2 WHERE a.id = $1',\n      [nodeA, nodeB]\n    );\n    return rows[0]?.similarity ?? 0;\n  }\n\n  async scoreForQuery(queryEmbedding: number[], nodeIds?: string[]): Promise<ScoredNode[]> {\n    const filterClause = nodeIds?.length ? 'AND id = ANY($2)' : '';\n    const values = nodeIds?.length ? [queryEmbedding, nodeIds] : [queryEmbedding];\n    const nodes = await this.db.query<NeuronNode & { similarity: number }>(\n      `SELECT *, 1 - (embedding <=> $1) as similarity FROM nodes WHERE embedding IS NOT NULL ${filterClause} ORDER BY embedding <=> $1`,\n      values\n    );\n\n    return nodes.map((node) => this.applyScoring(node, node.similarity ?? 0));\n  }\n\n  async findSimilar(nodeId: string, limit = 10, excludeConnected = false): Promise<ScoredNode[]> {\n    const base = excludeConnected\n      ? `SELECT id FROM nodes WHERE id NOT IN (SELECT to_node_id FROM edges WHERE from_node_id = $1)`\n      : `SELECT id FROM nodes WHERE id != $1`;\n    const nodes = await this.db.query<NeuronNode & { similarity: number }>(\n      `SELECT n.*, 1 - (n.embedding <=> (SELECT embedding FROM nodes WHERE id = $1)) as similarity\n       FROM nodes n\n       WHERE n.embedding IS NOT NULL AND n.id IN (${base})\n       ORDER BY n.embedding <=> (SELECT embedding FROM nodes WHERE id = $1)\n       LIMIT $2`,\n      [nodeId, limit]\n    );\n\n    return nodes.map((node) => this.applyScoring(node, node.similarity ?? 0));\n  }\n\n  async calculateNodeImportance(nodeId: string): Promise<number> {\n    const row = await this.db.queryOne<{ importance: number }>(\n      `WITH edge_weights AS (\n        SELECT to_node_id, SUM(strength) as total_inbound\n        FROM edges\n        GROUP BY to_node_id\n      )\n      SELECT COALESCE(ew.total_inbound, 0) + (n.connection_count * 0.1) as importance\n      FROM nodes n\n      LEFT JOIN edge_weights ew ON n.id = ew.to_node_id\n      WHERE n.id = $1`,\n      [nodeId]\n    );\n    return row?.importance ?? 0;\n  }\n\n  async rankAllNodes(): Promise<Array<{ nodeId: string; importance: number }>> {\n    const rows = await this.db.query<{ id: string; importance: number }>(\n      `WITH edge_weights AS (\n        SELECT to_node_id, SUM(strength) as total_inbound\n        FROM edges\n        GROUP BY to_node_id\n      )\n      SELECT n.id, COALESCE(ew.total_inbound, 0) + (n.connection_count * 0.1) as importance\n      FROM nodes n\n      LEFT JOIN edge_weights ew ON n.id = ew.to_node_id\n      ORDER BY importance DESC`\n    );\n    return rows.map((row) => ({ nodeId: row.id, importance: row.importance }));\n  }\n\n  async scoreRelevance(\n    sourceNodeId: string,\n    candidateNodeIds: string[],\n    context?: string\n  ): Promise<ScoredNode[]> {\n    const nodes = await this.db.query<NeuronNode & { similarity: number }>(\n      `SELECT *, 1 - (embedding <=> (SELECT embedding FROM nodes WHERE id = $1)) as similarity\n       FROM nodes\n       WHERE embedding IS NOT NULL AND id = ANY($2)\n       ORDER BY embedding <=> (SELECT embedding FROM nodes WHERE id = $1)`,\n      [sourceNodeId, candidateNodeIds]\n    );\n\n    return nodes.map((node) => {\n      const base = this.applyScoring(node, node.similarity ?? 0);\n      if (context) {\n        base.score += this.config.domainBoost * 0.1;\n      }\n      return base;\n    });\n  }\n\n  private applyScoring(node: NeuronNode & { similarity?: number }, similarity: number): ScoredNode {\n    const connections = node.connectionCount ?? 0;\n    const recency = node.updatedAt ? Math.max(0, 1 - (Date.now() - new Date(node.updatedAt).getTime()) / (1000 * 60 * 60 * 24 * 30)) : 0;\n    const domainMatch = 0;\n\n    const score =\n      similarity * this.config.similarityWeight +\n      connections * this.config.connectionWeight +\n      recency * this.config.recencyWeight +\n      domainMatch * this.config.domainBoost;\n\n    return {\n      node,\n      score,\n      breakdown: {\n        similarity,\n        connections,\n        recency,\n        domainMatch,\n      },\n    };\n  }\n}\n","import type { NeuronConfig } from '../core/types/settings';\nimport { Database, type DatabaseConfig } from './database';\n\nlet singleton: Database | null = null;\n\nexport function createDatabase(config: NeuronConfig): Database {\n  const dbConfig: DatabaseConfig = {\n    connectionString: config.database.url,\n    host: config.database.mode === 'docker' ? 'localhost' : undefined,\n    port: config.database.port,\n    user: config.database.user,\n    password: config.database.password,\n    database: config.database.database,\n    pool: config.database.pool,\n  };\n\n  return new Database(dbConfig);\n}\n\nexport function createDatabaseFromEnv(): Database {\n  const dbConfig: DatabaseConfig = {\n    connectionString: process.env.DATABASE_URL,\n    host: process.env.DB_HOST,\n    port: process.env.DB_PORT ? Number(process.env.DB_PORT) : undefined,\n    user: process.env.DB_USER,\n    password: process.env.DB_PASSWORD,\n    database: process.env.DB_NAME,\n  };\n\n  return new Database(dbConfig);\n}\n\nexport function getDatabase(config?: DatabaseConfig): Database {\n  if (!singleton) {\n    singleton = new Database(config ?? {});\n  }\n\n  return singleton;\n}\n\nexport function resetDatabaseSingleton(): void {\n  singleton = null;\n}\n","export type WhereClause = Record<string, unknown>;\n\nexport interface SelectOptions {\n  limit?: number;\n  offset?: number;\n  orderBy?: string;\n  orderDirection?: 'asc' | 'desc';\n}\n\nexport const buildWhereClause = (where?: WhereClause, startIndex = 1) => {\n  if (!where || Object.keys(where).length === 0) {\n    return { clause: '', values: [], nextIndex: startIndex };\n  }\n\n  const keys = Object.keys(where);\n  const values: unknown[] = [];\n  const conditions = keys.map((key, idx) => {\n    values.push(where[key]);\n    return `${key} = $${startIndex + idx}`;\n  });\n\n  return {\n    clause: `WHERE ${conditions.join(' AND ')}`,\n    values,\n    nextIndex: startIndex + keys.length,\n  };\n};\n\nexport const buildInsert = (table: string, data: Record<string, unknown>) => {\n  const keys = Object.keys(data);\n  const values = Object.values(data);\n  const columns = keys.map((key) => `\"${key}\"`).join(', ');\n  const placeholders = keys.map((_, idx) => `$${idx + 1}`).join(', ');\n\n  return {\n    sql: `INSERT INTO ${table} (${columns}) VALUES (${placeholders}) RETURNING *`,\n    values,\n  };\n};\n\nexport const buildUpdate = (\n  table: string,\n  data: Record<string, unknown>,\n  where: WhereClause\n) => {\n  const keys = Object.keys(data);\n  const values = Object.values(data);\n  const setClause = keys.map((key, idx) => `\"${key}\" = $${idx + 1}`).join(', ');\n\n  const whereResult = buildWhereClause(where, keys.length + 1);\n\n  return {\n    sql: `UPDATE ${table} SET ${setClause} ${whereResult.clause} RETURNING *`,\n    values: [...values, ...whereResult.values],\n  };\n};\n\nexport const buildSelect = (\n  table: string,\n  columns: string[] | '*',\n  where?: WhereClause,\n  options?: SelectOptions\n) => {\n  const columnList = columns === '*' ? '*' : columns.map((col) => `\"${col}\"`).join(', ');\n  const whereResult = buildWhereClause(where);\n  const orderClause = options?.orderBy\n    ? `ORDER BY ${options.orderBy} ${options.orderDirection ?? 'asc'}`\n    : '';\n  const limitClause = options?.limit ? `LIMIT ${options.limit}` : '';\n  const offsetClause = options?.offset ? `OFFSET ${options.offset}` : '';\n\n  return {\n    sql: `SELECT ${columnList} FROM ${table} ${whereResult.clause} ${orderClause} ${limitClause} ${offsetClause}`.trim(),\n    values: whereResult.values,\n  };\n};\n\nexport const buildDelete = (table: string, where: WhereClause) => {\n  const whereResult = buildWhereClause(where);\n  return {\n    sql: `DELETE FROM ${table} ${whereResult.clause}`,\n    values: whereResult.values,\n  };\n};\n"]}