@noesis-brain/mcp-server 2.0.0

package/dist/database/PostgresAdapter.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -0,0 +1,31 @@
+#!/usr/bin/env node
+/**
+ * md-manager MCP Server
+ *
+ * This MCP server enables Claude Code CLI to interact with your
+ * md-manager knowledge base through natural language.
+ *
+ * Usage:
+ *   npx md-manager-mcp-server
+ *
+ * Environment variables:
+ *   NOESIS_API_TOKEN - API token for Noesis backend authentication
+ *   NOESIS_API_URL   - Base URL of Noesis backend (e.g., http://localhost:5555)
+ *   GEMINI_API_KEY   - (Optional) Gemini API key for semantic search
+ *
+ * Add to .mcp.json (project root):
+ *   {
+ *     "mcpServers": {
+ *       "md-manager": {
+ *         "command": "node",
+ *         "args": ["./md-manager-mcp-server/dist/index.js"],
+ *         "env": {
+ *           "NOESIS_API_TOKEN": "${NOESIS_API_TOKEN}",
+ *           "NOESIS_API_URL": "${NOESIS_API_URL}"
+ *         }
+ *       }
+ *     }
+ *   }
+ */
+export {};
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG"}

package/dist/index.js

@@ -0,0 +1,126 @@
+#!/usr/bin/env node
+/**
+ * md-manager MCP Server
+ *
+ * This MCP server enables Claude Code CLI to interact with your
+ * md-manager knowledge base through natural language.
+ *
+ * Usage:
+ *   npx md-manager-mcp-server
+ *
+ * Environment variables:
+ *   NOESIS_API_TOKEN - API token for Noesis backend authentication
+ *   NOESIS_API_URL   - Base URL of Noesis backend (e.g., http://localhost:5555)
+ *   GEMINI_API_KEY   - (Optional) Gemini API key for semantic search
+ *
+ * Add to .mcp.json (project root):
+ *   {
+ *     "mcpServers": {
+ *       "md-manager": {
+ *         "command": "node",
+ *         "args": ["./md-manager-mcp-server/dist/index.js"],
+ *         "env": {
+ *           "NOESIS_API_TOKEN": "${NOESIS_API_TOKEN}",
+ *           "NOESIS_API_URL": "${NOESIS_API_URL}"
+ *         }
+ *       }
+ *     }
+ *   }
+ */
+import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import * as dotenv from 'dotenv';
+import * as path from 'path';
+import { fileURLToPath } from 'url';
+import { NoesisClient } from './api/NoesisClient.js';
+import { registerTools } from './tools/index.js';
+// ES module equivalent of __dirname
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = path.dirname(__filename);
+// Load .env from project root (two levels up from dist/)
+dotenv.config({ path: path.join(__dirname, '../../.env') });
+// Also try loading from md-manager root (three levels up)
+dotenv.config({ path: path.join(__dirname, '../../../.env') });
+/**
+ * Get required environment variables for API authentication
+ */
+function getApiConfig() {
+    const apiToken = process.env.NOESIS_API_TOKEN;
+    const apiBaseUrl = process.env.NOESIS_API_URL;
+    if (!apiToken || !apiBaseUrl) {
+        console.error('');
+        console.error('╔══════════════════════════════════════════════════════════════╗');
+        console.error('║  ERROR: Missing required environment variables               ║');
+        console.error('╟──────────────────────────────────────────────────────────────╢');
+        console.error('║  NOESIS_API_TOKEN and NOESIS_API_URL are required.           ║');
+        console.error('║                                                              ║');
+        console.error('║  To generate a token:                                        ║');
+        console.error('║  1. Open Noesis web UI                                       ║');
+        console.error('║  2. Go to Settings > API Tokens                              ║');
+        console.error('║  3. Generate a new token                                     ║');
+        console.error('║  4. Add to your .env file:                                   ║');
+        console.error('║                                                              ║');
+        console.error('║     NOESIS_API_TOKEN=noe_your_token_here                     ║');
+        console.error('║     NOESIS_API_URL=http://localhost:5555                     ║');
+        console.error('╚══════════════════════════════════════════════════════════════╝');
+        console.error('');
+        process.exit(1);
+    }
+    return { apiToken, apiBaseUrl };
+}
+/**
+ * Get Gemini API key (optional, for semantic search)
+ */
+function getGeminiApiKey() {
+    return process.env.GEMINI_API_KEY;
+}
+async function main() {
+    // Subcommand routing: `noesis-mcp setup [...]` runs the setup CLI instead of the MCP server.
+    const subcommand = process.argv[2];
+    if (subcommand === 'setup' || subcommand === 'upgrade') {
+        const { runSetup } = await import('./cli/setup.js');
+        await runSetup(process.argv.slice(3));
+        return;
+    }
+    // Get API configuration
+    const { apiToken, apiBaseUrl } = getApiConfig();
+    const geminiApiKey = getGeminiApiKey();
+    console.error(`md-manager MCP server connecting to Noesis API...`);
+    console.error(`  API URL: ${apiBaseUrl}`);
+    console.error(`  Token: ${apiToken.substring(0, 8)}...`);
+    if (geminiApiKey) {
+        console.error('  Gemini API key found - semantic search enabled');
+    }
+    else {
+        console.error('  GEMINI_API_KEY not set - semantic search disabled');
+    }
+    // Initialize API client (replaces direct database access)
+    const client = new NoesisClient(apiBaseUrl, apiToken);
+    // Create MCP server
+    const server = new McpServer({
+        name: 'noesis',
+        version: '0.4.0' // Phase 8: API Token Authentication
+    });
+    // Register tools with API client
+    registerTools(server, { client, geminiApiKey });
+    // Handle graceful shutdown
+    process.on('SIGINT', async () => {
+        console.error('Shutting down md-manager MCP server...');
+        await client.close();
+        process.exit(0);
+    });
+    process.on('SIGTERM', async () => {
+        console.error('Shutting down md-manager MCP server...');
+        await client.close();
+        process.exit(0);
+    });
+    // Start server with stdio transport
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+    console.error('md-manager MCP server started (API mode)');
+}
+main().catch((error) => {
+    console.error('Failed to start md-manager MCP server:', error);
+    process.exit(1);
+});
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
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package/dist/services/embedding.d.ts

@@ -0,0 +1,38 @@
+/**
+ * Embedding service using Gemini API
+ * Generates 768-dimensional vectors for semantic search
+ */
+/**
+ * Initialize the Gemini client
+ */
+export declare function initEmbeddingService(apiKey: string): void;
+/**
+ * Generate embedding for text using Gemini
+ * Returns 768-dimensional vector
+ */
+export declare function generateEmbedding(text: string): Promise<number[]>;
+/**
+ * Generate embeddings for multiple texts (batch processing)
+ * Includes rate limiting to respect API limits
+ */
+export declare function generateEmbeddingsBatch(texts: Array<{
+    id: number;
+    text: string;
+}>, onProgress?: (current: number, total: number, id: number) => void): Promise<Array<{
+    id: number;
+    embedding: number[];
+}>>;
+/**
+ * Generated metadata structure
+ */
+export interface GeneratedMetadata {
+    title?: string;
+    description?: string;
+    keywords?: string[];
+}
+/**
+ * Generate metadata (title, description, keywords) for a document using AI
+ * Used during sync when frontmatter metadata is missing
+ */
+export declare function generateMetadata(content: string): Promise<GeneratedMetadata>;
+//# sourceMappingURL=embedding.d.ts.map

package/dist/services/embedding.d.ts.map

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package/dist/services/embedding.js

@@ -0,0 +1,126 @@
+/**
+ * Embedding service using Gemini API
+ * Generates 768-dimensional vectors for semantic search
+ */
+import { GoogleGenAI } from '@google/genai';
+let genAI = null;
+/**
+ * Initialize the Gemini client
+ */
+export function initEmbeddingService(apiKey) {
+    genAI = new GoogleGenAI({ apiKey });
+}
+/**
+ * Generate embedding for text using Gemini
+ * Returns 768-dimensional vector
+ */
+export async function generateEmbedding(text) {
+    if (!genAI) {
+        throw new Error('Embedding service not initialized. Call initEmbeddingService first.');
+    }
+    // Truncate text if too long (Gemini has token limits)
+    const maxChars = 25000; // ~6000 tokens
+    const truncatedText = text.length > maxChars
+        ? text.substring(0, maxChars) + '...'
+        : text;
+    const result = await genAI.models.embedContent({
+        model: 'gemini-embedding-001',
+        contents: truncatedText,
+        config: { outputDimensionality: 768 },
+    });
+    return result.embeddings[0].values;
+}
+/**
+ * Generate embeddings for multiple texts (batch processing)
+ * Includes rate limiting to respect API limits
+ */
+export async function generateEmbeddingsBatch(texts, onProgress) {
+    const results = [];
+    for (let i = 0; i < texts.length; i++) {
+        const { id, text } = texts[i];
+        try {
+            const embedding = await generateEmbedding(text);
+            results.push({ id, embedding });
+            if (onProgress) {
+                onProgress(i + 1, texts.length, id);
+            }
+            // Rate limiting: ~100ms between requests to stay well under 1500 req/min
+            if (i < texts.length - 1) {
+                await new Promise(resolve => setTimeout(resolve, 100));
+            }
+        }
+        catch (error) {
+            console.error(`Error generating embedding for note ${id}:`, error);
+            // Continue with other notes
+        }
+    }
+    return results;
+}
+/**
+ * Generate metadata (title, description, keywords) for a document using AI
+ * Used during sync when frontmatter metadata is missing
+ */
+export async function generateMetadata(content) {
+    if (!genAI) {
+        throw new Error('AI service not initialized. Call initEmbeddingService first.');
+    }
+    // Remove existing frontmatter from content for analysis
+    let contentToAnalyze = content;
+    if (content.startsWith('---')) {
+        const endIndex = content.indexOf('---', 3);
+        if (endIndex !== -1) {
+            contentToAnalyze = content.substring(endIndex + 3).trim();
+        }
+    }
+    // Truncate if too long
+    const maxChars = 15000;
+    if (contentToAnalyze.length > maxChars) {
+        contentToAnalyze = contentToAnalyze.substring(0, maxChars) + '...';
+    }
+    const prompt = `Analyze this markdown document and generate metadata for it.
+
+Document content:
+---
+${contentToAnalyze}
+---
+
+Generate the following metadata in JSON format:
+1. title: A concise, descriptive title (max 80 chars). IMPORTANT: If the document starts with a # heading on the first line, use that FIRST heading as the title (clean it up if needed). Only generate a new title if there's no H1 heading at the start.
+2. description: A brief summary of what this document is about (1-2 sentences, max 200 chars)
+3. keywords: An array of 5-15 relevant keywords/tags including:
+   - Main topics and concepts
+   - Technical terms and technologies (Redis, SignalR, MongoDB, etc.)
+   - Component/service/class names found in code (e.g., PrintController, BtXmlExecutor, DevicesInternalController)
+   - Include BOTH CamelCase (PrintController) AND space-separated (Print Controller) versions of component names
+   - API endpoint patterns or route names if mentioned
+   Avoid generic words like "document", "file", "note", "example", "sample".
+
+Respond with ONLY valid JSON in this exact format, no markdown code blocks:
+{"title": "...", "description": "...", "keywords": ["...", "..."]}`;
+    try {
+        const result = await genAI.models.generateContent({
+            model: 'gemini-1.5-flash',
+            contents: prompt,
+        });
+        const responseText = (result.text ?? '').trim();
+        // Parse JSON response (handle potential markdown code blocks)
+        let jsonStr = responseText;
+        if (jsonStr.startsWith('```')) {
+            // Remove markdown code blocks
+            jsonStr = jsonStr.replace(/```json?\n?/g, '').replace(/```/g, '').trim();
+        }
+        const parsed = JSON.parse(jsonStr);
+        return {
+            title: typeof parsed.title === 'string' ? parsed.title.substring(0, 100) : undefined,
+            description: typeof parsed.description === 'string' ? parsed.description.substring(0, 300) : undefined,
+            keywords: Array.isArray(parsed.keywords)
+                ? parsed.keywords.filter((k) => typeof k === 'string').slice(0, 20)
+                : undefined
+        };
+    }
+    catch (error) {
+        console.error('Error generating metadata:', error);
+        return {};
+    }
+}
+//# sourceMappingURL=embedding.js.map

package/dist/services/embedding.js.map

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package/dist/tools/SyncStateManager.d.ts

@@ -0,0 +1,65 @@
+/**
+ * SyncStateManager - Hash-based three-way sync comparison + baseline content store
+ *
+ * State JSON at {rootPath}/.noesis/.sync-state.json:
+ *   v1 (legacy): { version: 1, hashes: { relPath: hash } }
+ *   v2 (current): { version: 2, entries: { relPath: { hash, lastSyncedAt } } }
+ * Both are accepted on load; v1 is rewritten as v2 on next save.
+ *
+ * Baseline content: {rootPath}/.noesis/baseline/{relPath} mirrors the exact markdown
+ * last successfully synced. Required by the MCP three-tier conflict cascade
+ * (anchor reapply → node-diff3 → structured BASE/LOCAL/CLOUD report).
+ */
+export type SyncDirection = 'skip' | 'push' | 'pull' | 'conflict';
+/**
+ * Determine sync direction using three-way hash comparison.
+ *
+ * Extra defense: when `cloudEditedOnlineAt` is newer than `baselineLastSyncedAt`,
+ * cloud counts as changed-since-baseline even if the cloud hash happens to match
+ * baseline (defense against hash collisions and metadata-only re-hash drift).
+ */
+export declare function determineSyncDirection(localHash: string, cloudHash: string, baselineHash: string | undefined, localMtime: number, cloudMtime: number, cloudEditedOnlineAt?: string | null, baselineLastSyncedAt?: string | undefined): SyncDirection;
+export interface BaselineMeta {
+    hash: string;
+    lastSyncedAt: string | undefined;
+}
+export declare class SyncStateManager {
+    private statePath;
+    private baselineDir;
+    private state;
+    private dirty;
+    private normalizeKey;
+    constructor(rootPath: string);
+    /**
+     * Load state from disk. Accepts both v1 and v2; upgrades v1 to v2 in memory
+     * (re-written to disk on next save).
+     */
+    load(): void;
+    /** Get the baseline hash for a file from the last successful sync. */
+    getBaseline(relativePath: string): string | undefined;
+    /** Get the full baseline metadata (hash + lastSyncedAt). */
+    getBaselineMeta(relativePath: string): BaselineMeta | undefined;
+    /**
+     * Set the baseline hash + lastSyncedAt after a successful sync operation.
+     * Optionally provide content to mirror under .noesis/baseline/<relPath>.
+     *
+     * Backward-compat: callers may pass just `(relativePath, hash)` (string) — old shape.
+     */
+    setBaseline(relativePath: string, hashOrMeta: string | BaselineMeta, content?: string): void;
+    /** Remove baseline (state entry + on-disk content file) for a deleted/renamed file. */
+    removeBaseline(relativePath: string): void;
+    /**
+     * Remove baselines for paths not in the active set (cleanup deleted/renamed files).
+     * Also deletes corresponding baseline content files.
+     */
+    pruneStale(activePaths: Set<string>): void;
+    /** Read baseline content from disk. Returns undefined for v1-upgraded entries (no file). */
+    getBaselineContent(relativePath: string): string | undefined;
+    /** Write baseline content to disk under .noesis/baseline/<relPath>. */
+    setBaselineContent(relativePath: string, content: string): void;
+    private writeBaselineContent;
+    private removeBaselineContent;
+    /** Write state to disk only if dirty. Creates .noesis dir if needed. */
+    save(): void;
+}
+//# sourceMappingURL=SyncStateManager.d.ts.map

package/dist/tools/SyncStateManager.d.ts.map

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