@noesis-brain/mcp-server 2.0.0

package/dist/api/NoesisClient.js.map

@@ -0,0 +1 @@
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package/dist/cli/setup.d.ts

@@ -0,0 +1,8 @@
+/**
+ * `noesis-mcp setup` — install CLAUDE.md conventions and skills into ~/.claude/.
+ *
+ * Idempotent: re-running upgrades the bracketed block / overwrites versioned
+ * skill files in place. User edits outside the markers are preserved.
+ */
+export declare function runSetup(argv: string[]): Promise<void>;
+//# sourceMappingURL=setup.d.ts.map

package/dist/cli/setup.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../src/cli/setup.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AA4IH,wBAAsB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA+B5D"}

package/dist/cli/setup.js

@@ -0,0 +1,148 @@
+/**
+ * `noesis-mcp setup` — install CLAUDE.md conventions and skills into ~/.claude/.
+ *
+ * Idempotent: re-running upgrades the bracketed block / overwrites versioned
+ * skill files in place. User edits outside the markers are preserved.
+ */
+import * as fs from 'fs';
+import * as os from 'os';
+import * as path from 'path';
+import { fileURLToPath } from 'url';
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = path.dirname(__filename);
+// Package root: dist/cli/setup.js -> ../.. = package root.
+const PACKAGE_ROOT = path.resolve(__dirname, '..', '..');
+const TEMPLATES_DIR = path.join(PACKAGE_ROOT, 'templates');
+const SKILL_TEMPLATES_DIR = path.join(PACKAGE_ROOT, 'skill-templates');
+const SCRIPTS_DIR = path.join(PACKAGE_ROOT, 'scripts');
+const CLAUDE_DIR = path.join(os.homedir(), '.claude');
+const CLAUDE_MD_PATH = path.join(CLAUDE_DIR, 'CLAUDE.md');
+const COMMANDS_DIR = path.join(CLAUDE_DIR, 'commands');
+const BLOCK_VERSION = 'v1';
+const BLOCK_START = `<!-- noesis-mcp-server:start ${BLOCK_VERSION} -->`;
+const BLOCK_END = `<!-- noesis-mcp-server:end -->`;
+// Loose start marker (any version) used to find existing blocks during upgrade.
+const BLOCK_START_RE = /<!-- noesis-mcp-server:start [^>]*-->/;
+function parseArgs(argv) {
+    return {
+        claudeMdOnly: argv.includes('--claude-md-only'),
+        skillsOnly: argv.includes('--skills-only'),
+        dryRun: argv.includes('--dry-run'),
+    };
+}
+function installClaudeMd(dryRun) {
+    const blockContent = fs.readFileSync(path.join(TEMPLATES_DIR, 'claude-md-block.md'), 'utf-8').trimEnd();
+    const wrappedBlock = `${BLOCK_START}\n${blockContent}\n${BLOCK_END}`;
+    if (!fs.existsSync(CLAUDE_DIR)) {
+        if (!dryRun)
+            fs.mkdirSync(CLAUDE_DIR, { recursive: true });
+    }
+    if (!fs.existsSync(CLAUDE_MD_PATH)) {
+        if (!dryRun)
+            fs.writeFileSync(CLAUDE_MD_PATH, wrappedBlock + '\n', 'utf-8');
+        return { action: 'created', path: CLAUDE_MD_PATH };
+    }
+    const current = fs.readFileSync(CLAUDE_MD_PATH, 'utf-8');
+    const startMatch = current.match(BLOCK_START_RE);
+    if (!startMatch) {
+        // No existing block — append.
+        const sep = current.endsWith('\n') ? '\n' : '\n\n';
+        const next = current + sep + wrappedBlock + '\n';
+        if (!dryRun)
+            fs.writeFileSync(CLAUDE_MD_PATH, next, 'utf-8');
+        return { action: 'inserted', path: CLAUDE_MD_PATH };
+    }
+    const startIdx = current.indexOf(startMatch[0]);
+    const endIdx = current.indexOf(BLOCK_END, startIdx);
+    if (endIdx === -1) {
+        throw new Error(`Found ${startMatch[0]} but no matching ${BLOCK_END} in ${CLAUDE_MD_PATH}. Fix manually or remove the start marker and re-run.`);
+    }
+    const existingBlock = current.substring(startIdx, endIdx + BLOCK_END.length);
+    if (existingBlock === wrappedBlock) {
+        return { action: 'unchanged', path: CLAUDE_MD_PATH };
+    }
+    const next = current.substring(0, startIdx) + wrappedBlock + current.substring(endIdx + BLOCK_END.length);
+    if (!dryRun)
+        fs.writeFileSync(CLAUDE_MD_PATH, next, 'utf-8');
+    return { action: 'upgraded', path: CLAUDE_MD_PATH };
+}
+function installSkills(dryRun) {
+    if (!fs.existsSync(COMMANDS_DIR)) {
+        if (!dryRun)
+            fs.mkdirSync(COMMANDS_DIR, { recursive: true });
+    }
+    const scriptPath = path.join(SCRIPTS_DIR, 'noesis-sync.mjs').replace(/\\/g, '/');
+    const templates = fs.readdirSync(SKILL_TEMPLATES_DIR).filter((f) => f.endsWith('.md'));
+    const results = [];
+    for (const filename of templates) {
+        const templatePath = path.join(SKILL_TEMPLATES_DIR, filename);
+        const targetPath = path.join(COMMANDS_DIR, filename);
+        let content = fs.readFileSync(templatePath, 'utf-8');
+        content = content.replace(/\{\{NOESIS_MCP_SCRIPT_PATH\}\}/g, scriptPath);
+        let action;
+        if (!fs.existsSync(targetPath)) {
+            action = 'created';
+        }
+        else {
+            const existing = fs.readFileSync(targetPath, 'utf-8');
+            action = existing === content ? 'unchanged' : 'updated';
+        }
+        if (action !== 'unchanged' && !dryRun) {
+            fs.writeFileSync(targetPath, content, 'utf-8');
+        }
+        results.push({ name: filename.replace(/\.md$/, ''), action, path: targetPath });
+    }
+    return results;
+}
+function printMcpRegistrationHint() {
+    // Resolve the absolute path to the running MCP server entry.
+    const entry = path.join(PACKAGE_ROOT, 'dist', 'index.js').replace(/\\/g, '/');
+    console.log('');
+    console.log('───────────────────────────────────────────────────────────────');
+    console.log('Final step: register the Noesis MCP server with Claude Code.');
+    console.log('───────────────────────────────────────────────────────────────');
+    console.log('');
+    console.log('Get your API token from https://noesisbrain.com (Settings → API Tokens),');
+    console.log('then run:');
+    console.log('');
+    console.log('  claude mcp add noesis --scope user \\');
+    console.log('    -e NOESIS_API_TOKEN="noe_your_token_here" \\');
+    console.log('    -e NOESIS_API_URL="https://noesisbrain.com" \\');
+    console.log('    -e GEMINI_API_KEY="optional_gemini_key" \\');
+    console.log(`    -- node "${entry}"`);
+    console.log('');
+    console.log('After that, restart Claude Code so the new system prompt and MCP server load.');
+    console.log('');
+}
+export async function runSetup(argv) {
+    const options = parseArgs(argv);
+    const note = options.dryRun ? ' (dry-run)' : '';
+    console.log(`noesis-mcp setup${note}`);
+    console.log(`  CLAUDE.md target:   ${CLAUDE_MD_PATH}`);
+    console.log(`  Commands target:    ${COMMANDS_DIR}`);
+    console.log('');
+    if (!options.skillsOnly) {
+        const result = installClaudeMd(options.dryRun);
+        console.log(`  CLAUDE.md: ${result.action}`);
+    }
+    else {
+        console.log('  CLAUDE.md: skipped (--skills-only)');
+    }
+    if (!options.claudeMdOnly) {
+        const skillResults = installSkills(options.dryRun);
+        for (const r of skillResults) {
+            console.log(`  Skill /${r.name}: ${r.action}`);
+        }
+    }
+    else {
+        console.log('  Skills: skipped (--claude-md-only)');
+    }
+    if (!options.dryRun) {
+        printMcpRegistrationHint();
+    }
+    else {
+        console.log('');
+        console.log('Dry-run complete. Re-run without --dry-run to apply.');
+    }
+}
+//# sourceMappingURL=setup.js.map

package/dist/cli/setup.js.map

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package/dist/database/PostgresAdapter.d.ts

@@ -0,0 +1,385 @@
+/**
+ * PostgreSQL adapter for md-manager MCP server
+ * Connects to Neon PostgreSQL database
+ */
+import type { Note, SearchResult, SearchOptions, LocalFile } from '../types/index.js';
+export declare class PostgresAdapter {
+    private pool;
+    private userId;
+    constructor(connectionString: string, userId?: number);
+    /**
+     * Build user_id filter condition for queries
+     * Returns { condition, params, nextParamIndex } for adding to WHERE clauses
+     */
+    private buildUserFilter;
+    /**
+     * Search notes using PostgreSQL full-text search (tsvector)
+     */
+    searchNotes(query: string, options?: SearchOptions): Promise<SearchResult[]>;
+    /**
+     * Fallback to ILIKE search if FTS fails
+     */
+    private fallbackSearch;
+    /**
+     * Get a note by ID
+     */
+    getNote(id: number): Promise<Note | undefined>;
+    /**
+     * Get a note by file path
+     */
+    getNoteByPath(filePath: string): Promise<Note | undefined>;
+    /**
+     * List all notes
+     */
+    listNotes(options?: {
+        limit?: number;
+        offset?: number;
+        root?: string;
+    }): Promise<Note[]>;
+    /**
+     * Get recent notes
+     */
+    getRecentNotes(days?: number, limit?: number): Promise<Note[]>;
+    /**
+     * Get all roots (watched directories)
+     */
+    getRoots(): Promise<Array<{
+        id: number;
+        path: string;
+        name: string;
+        is_visible: boolean;
+    }>>;
+    /**
+     * Expand CamelCase terms to include space-separated versions.
+     * E.g., "PrintController" becomes "PrintController Print Controller"
+     * This improves search recall for technical component names.
+     */
+    private expandCamelCase;
+    /**
+     * Extract search terms from natural language query
+     */
+    private extractSearchTerms;
+    /**
+     * Generate an excerpt from content highlighting the search terms
+     */
+    private generateExcerpt;
+    /**
+     * Normalize ts_rank relevance score to 0-100 percentage
+     */
+    private normalizeRelevance;
+    /**
+     * Get notes for pulling to local machine
+     * Returns notes with relative_path for reconstruction on another machine
+     */
+    getNotesForPull(options?: {
+        root?: string;
+        rootId?: number;
+    }): Promise<Array<{
+        id: number;
+        relative_path: string;
+        content: string;
+        title: string;
+        root_name: string;
+        root_path: string;
+        modified_at: string;
+    }>>;
+    /**
+     * Get a root by name
+     */
+    getRootByName(name: string): Promise<{
+        id: number;
+        path: string;
+        name: string;
+    } | undefined>;
+    /**
+     * Upsert a note (insert or update based on file_path + root_id)
+     * Returns 'created' | 'updated' | 'skipped'
+     */
+    upsertNote(file: LocalFile, metadata: {
+        title?: string;
+        description?: string;
+        keywords?: string[];
+    }): Promise<'created' | 'updated' | 'skipped'>;
+    /**
+     * Get all roots with their paths and last scanned times
+     */
+    getRootsForSync(): Promise<Array<{
+        id: number;
+        name: string;
+        path: string;
+        lastScannedAt: string | null;
+    }>>;
+    /**
+     * Get a root by its path (for auto-detection)
+     */
+    getRootByPath(rootPath: string): Promise<{
+        id: number;
+        name: string;
+        path: string;
+    } | undefined>;
+    /**
+     * Create a new root (for auto-creation during sync)
+     */
+    createRoot(options: {
+        name: string;
+        path: string;
+        type?: string;
+    }): Promise<{
+        id: number;
+        name: string;
+        path: string;
+    }>;
+    /**
+     * Log a sync operation (for Dashboard sync activity display)
+     */
+    logSyncOperation(options: {
+        rootId: number;
+        filesScanned: number;
+        filesAdded: number;
+        filesUpdated: number;
+        filesDeleted: number;
+        source: string;
+        machineName?: string;
+        notes?: string;
+    }): Promise<void>;
+    /**
+     * Get recent sync logs for a root
+     */
+    getSyncLogs(rootId?: number, limit?: number): Promise<Array<{
+        id: number;
+        rootId: number;
+        syncedAt: string;
+        filesScanned: number;
+        filesAdded: number;
+        filesUpdated: number;
+        filesDeleted: number;
+        source: string;
+        machineName: string | null;
+        notes: string | null;
+    }>>;
+    /**
+     * Update last_scanned_at for a root
+     */
+    updateRootScanTime(rootId: number): Promise<void>;
+    /**
+     * Get last sync time from settings
+     */
+    getLastSyncTime(): Promise<string | null>;
+    /**
+     * Set last sync time in settings
+     */
+    setLastSyncTime(timestamp: string): Promise<void>;
+    /**
+     * Get count of notes per root
+     */
+    getNoteCountByRoot(): Promise<Map<number, number>>;
+    /**
+     * Get all note hashes for a root (for comparison with local files)
+     */
+    getNoteHashesByRoot(rootId: number): Promise<Map<string, string>>;
+    /**
+     * Extract title from markdown content (H1 heading, frontmatter, or filename)
+     * @param content - The markdown content
+     * @param filename - Optional filename to use as fallback (e.g., "my-note.md")
+     */
+    private extractTitleFromContent;
+    /**
+     * Compute SHA-256 hash of content
+     */
+    static computeHash(content: string): string;
+    /**
+     * Get note with metadata for AI enhancement
+     * Returns current metadata and content for analysis
+     */
+    getNoteForEnhancement(id: number): Promise<{
+        id: number;
+        title: string;
+        description: string | null;
+        keywords: string[];
+        aliases: string[];
+        content: string;
+        file_path: string;
+        ai_enhanced_at: string | null;
+        root_name: string | null;
+    } | null>;
+    /**
+     * Get notes needing enhancement (missing description or keywords)
+     */
+    getNotesNeedingEnhancement(options?: {
+        root?: string;
+        limit?: number;
+        important_only?: boolean;
+    }): Promise<Array<{
+        id: number;
+        title: string;
+        file_path: string;
+        has_description: boolean;
+        has_keywords: boolean;
+        is_favorite: boolean;
+        has_stars: boolean;
+        points: number;
+        ai_enhanced_at: string | null;
+    }>>;
+    /**
+     * Update note metadata (for AI enhancement)
+     * Phase 6.1: Updates title, description, keywords, and aliases
+     */
+    updateNoteMetadata(id: number, metadata: {
+        title?: string;
+        description?: string;
+        keywords?: string[];
+        aliases?: string[];
+    }): Promise<boolean>;
+    /**
+     * Get note with current scores for analysis
+     */
+    getNoteForScoring(id: number): Promise<{
+        id: number;
+        title: string;
+        description: string | null;
+        keywords: string[];
+        content: string;
+        file_path: string;
+        importance_score: number | null;
+        quality_score: number | null;
+        relations: Array<{
+            type: string;
+            target_id: number;
+            context?: string;
+        }>;
+        is_favorite: boolean;
+        points: number;
+    } | null>;
+    /**
+     * Update importance score (0-100)
+     */
+    updateImportanceScore(id: number, score: number): Promise<boolean>;
+    /**
+     * Update quality score (0-100)
+     */
+    updateQualityScore(id: number, score: number): Promise<boolean>;
+    /**
+     * Update relations for a note (bidirectional)
+     * Also creates inverse relations on target notes
+     */
+    updateRelations(id: number, relations: Array<{
+        type: string;
+        target_id: number;
+        context?: string;
+    }>): Promise<{
+        updated: number;
+        inversesCreated: number;
+    }>;
+    /**
+     * Get other notes for relation analysis (excluding the source note)
+     */
+    getNotesForRelationAnalysis(excludeId: number, options?: {
+        root?: string;
+        limit?: number;
+    }): Promise<Array<{
+        id: number;
+        title: string;
+        description: string | null;
+        keywords: string[];
+        file_path: string;
+    }>>;
+    /**
+     * Get knowledge base statistics for health analysis
+     */
+    getKnowledgeBaseStats(options?: {
+        root?: string;
+        limit?: number;
+    }): Promise<{
+        total: number;
+        withImportanceScore: number;
+        withQualityScore: number;
+        withRelations: number;
+        withDescription: number;
+        withKeywords: number;
+        lowQuality: Array<{
+            id: number;
+            title: string;
+            quality_score: number | null;
+            file_path: string;
+        }>;
+        lowImportance: Array<{
+            id: number;
+            title: string;
+            importance_score: number | null;
+            file_path: string;
+        }>;
+        orphans: Array<{
+            id: number;
+            title: string;
+            file_path: string;
+        }>;
+        missingMetadata: Array<{
+            id: number;
+            title: string;
+            file_path: string;
+            missing: string[];
+        }>;
+    }>;
+    /**
+     * Get notes without embeddings (for batch processing)
+     */
+    getNotesWithoutEmbeddings(options?: {
+        limit?: number;
+        root?: string;
+    }): Promise<Array<{
+        id: number;
+        title: string;
+        content: string;
+        file_path: string;
+    }>>;
+    /**
+     * Update a note's embedding vector
+     */
+    updateNoteEmbedding(id: number, embedding: number[]): Promise<boolean>;
+    /**
+     * Search notes by embedding similarity (cosine distance)
+     */
+    searchByEmbedding(embedding: number[], options?: {
+        limit?: number;
+        root?: string;
+    }): Promise<Array<{
+        id: number;
+        title: string;
+        description: string | null;
+        file_path: string;
+        similarity: number;
+    }>>;
+    /**
+     * Get a note's embedding for similarity comparison
+     */
+    getNoteEmbedding(id: number): Promise<{
+        id: number;
+        title: string;
+        embedding: number[] | null;
+    } | null>;
+    /**
+     * Find similar notes by embedding
+     */
+    findSimilarNotes(noteId: number, options?: {
+        limit?: number;
+    }): Promise<Array<{
+        id: number;
+        title: string;
+        description: string | null;
+        file_path: string;
+        similarity: number;
+    }>>;
+    /**
+     * Get embedding statistics
+     */
+    getEmbeddingStats(): Promise<{
+        total: number;
+        withEmbeddings: number;
+        withoutEmbeddings: number;
+    }>;
+    /**
+     * Close the database connection pool
+     */
+    close(): Promise<void>;
+}
+//# sourceMappingURL=PostgresAdapter.d.ts.map

package/dist/database/PostgresAdapter.d.ts.map

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