@nfdi4plants/arctrl 3.1.0 → 3.2.0

package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ScholarlyArticle.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ScholarlyArticle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AASzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,qBAAa,0BAA0B;;CAGtC;AAED,wBAAgB,sCAAsC,IAAI,QAAQ,CAEjE;AAED,wBAAgB,kDAAkD,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAczF;AAED,wBAAgB,iDAAiD,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CAmCrF;AAED,wBAAgB,mDAAmD,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAG7F;AAED,wBAAgB,oDAAoD,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,oDAAoD,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAEnH;AAED,wBAAgB,0DAA0D,CAAC,WAAW,EAAE,WAAW,GAAG,MAAM,CAc3G;AAED,wBAAgB,8DAA8D,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAa5I"}
+{"version":3,"file":"ScholarlyArticle.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ScholarlyArticle.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAKjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AASzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,qBAAa,0BAA0B;;CAGtC;AAED,wBAAgB,sCAAsC,IAAI,QAAQ,CAEjE;AAED,wBAAgB,kDAAkD,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAezF;AAED,wBAAgB,iDAAiD,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CAmCrF;AAED,wBAAgB,mDAAmD,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAG7F;AAED,wBAAgB,oDAAoD,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,oDAAoD,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAEnH;AAED,wBAAgB,0DAA0D,CAAC,WAAW,EAAE,WAAW,GAAG,MAAM,CAkB3G;AAED,wBAAgB,8DAA8D,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAiB5I"}

package/dist/ts/ts/Conversion/ScholarlyArticle.js

@@ -1,14 +1,14 @@
-import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { class_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
+import { toText, printf, concat, join } from '../../node_modules/@fable-org/fable-library-ts/String.js';
 import { LDPerson } from '../ROCrate/LDTypes/Person.js';
-import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
+import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.5.0/Decode.fs.js';
 import { decoder, encoder } from '../Json/ROCrate/LDNode.js';
-import { toText, printf, join } from '../../node_modules/@fable-org/fable-library-js/String.js';
-import { StringBuilder_$ctor, StringBuilder__Clear, StringBuilder__Append_244C7CD6 } from '../../node_modules/@fable-org/fable-library-js/System.Text.js';
-import { getEnumerator, disposeSafe } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
-import { map, isEmpty, filter, toList, delay, append, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { unwrap, value, map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { toString as toString$1 } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js';
+import { Exception, getEnumerator, disposeSafe } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { StringBuilder_$ctor, StringBuilder__Clear, StringBuilder__Append_244C7CD6 } from '../../node_modules/@fable-org/fable-library-ts/System.Text.js';
+import { toString } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { map, isEmpty, filter, toList, delay, append, singleton, empty } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
+import { unwrap, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { toString as toString$1 } from '../fable_modules/Thoth.Json.JavaScript.0.5.0/Encode.fs.js';
 import { ResizeArray_map, Option_fromSeq, ResizeArray_tryPick } from '../Core/Helper/Collections.js';
 import { BaseTypes_composeComment_Z13201A7E, BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_decomposeComment_Z2F770004, BaseTypes_decomposeDefinedTerm_Z2F770004 } from './Basic.js';
 import { LDPropertyValue } from '../ROCrate/LDTypes/PropertyValue.js';
@@ -23,17 +23,18 @@ function ScholarlyArticleConversion_$reflection() {
   return class_type("ARCtrl.Conversion.ScholarlyArticleConversion", void 0, ScholarlyArticleConversion);
 }
 function ScholarlyArticleConversion_composeAuthor_Z721C83C5(author) {
-  let arg;
+  let arg = void 0;
   try {
     const matchValue = fromString(decoder, author);
     if (matchValue.tag === /* Error */
     1) {
-      throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+      throw new Exception((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
     } else {
       return matchValue.fields[0];
     }
   } catch (matchValue_1) {
-    return LDPerson.create(author);
+    const id = concat("#Author_", author);
+    return LDPerson.create(author, void 0, id);
   }
 }
 function ScholarlyArticleConversion_splitAuthors_Z721C83C5(a) {
@@ -88,21 +89,29 @@ function ScholarlyArticleConversion_composeScholarlyArticle_D324A6D(publication)
   let title;
   const matchValue = publication.Title;
   if (matchValue == null) {
-    throw new Error("Publication must have a title");
+    throw new Exception("Publication must have a title");
   } else {
     title = value(matchValue);
   }
-  const authors_1 = map$1(ScholarlyArticleConversion_composeAuthors_Z721C83C5, publication.Authors);
+  let authors_1;
+  const option_1 = publication.Authors;
+  authors_1 = option_1 != null ? ScholarlyArticleConversion_composeAuthors_Z721C83C5(value(option_1)) : void 0;
   const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, publication.Comments));
   const identifiers = Array.from(toList(delay(() => append(publication.DOI != null && value(publication.DOI) !== "" ? singleton(LDPropertyValue.createDOI(value(publication.DOI))) : empty(), delay(() => publication.PubMedID != null && value(publication.PubMedID) !== "" ? singleton(LDPropertyValue.createPubMedID(value(publication.PubMedID))) : empty())))));
-  const status = map$1(BaseTypes_composeDefinedTerm_ZDED3A0F, publication.Status);
+  let status;
+  const option_3 = publication.Status;
+  status = option_3 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(value(option_3)) : void 0;
   return LDScholarlyArticle.create(title, identifiers, void 0, unwrap(authors_1), void 0, unwrap(status), unwrap(comments));
 }
 function ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8(sa, graph, context) {
   const title = LDScholarlyArticle.getHeadlineAsString(sa, unwrap(context));
-  const authors = map$1((a) => ScholarlyArticleConversion_decomposeAuthors_1AAAE9A5(a, unwrap(context)), Option_fromSeq(LDScholarlyArticle.getAuthors(sa, unwrap(graph), unwrap(context))));
+  let authors;
+  const option_1 = Option_fromSeq(LDScholarlyArticle.getAuthors(sa, unwrap(graph), unwrap(context)));
+  authors = option_1 != null ? ScholarlyArticleConversion_decomposeAuthors_1AAAE9A5(value(option_1), unwrap(context)) : void 0;
   const comments = ResizeArray_map((c) => BaseTypes_decomposeComment_Z2F770004(c, unwrap(context)), LDScholarlyArticle.getComments(sa, unwrap(graph), unwrap(context)));
-  const status = map$1((s) => BaseTypes_decomposeDefinedTerm_Z2F770004(s, unwrap(context)), LDScholarlyArticle.tryGetCreativeWorkStatus(sa, unwrap(graph), unwrap(context)));
+  let status;
+  const option_3 = LDScholarlyArticle.tryGetCreativeWorkStatus(sa, unwrap(graph), unwrap(context));
+  status = option_3 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(value(option_3), unwrap(context)) : void 0;
   const identifiers = LDScholarlyArticle.getIdentifiersAsPropertyValue(sa, unwrap(graph), unwrap(context));
   let doi;
   const _arg = ResizeArray_tryPick((i) => LDPropertyValue.tryGetAsDOI(i, unwrap(context)), identifiers);

package/dist/ts/ts/Conversion/Study.d.ts

@@ -1,8 +1,8 @@
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { LDGraph, LDNode } from '../ROCrate/LDObject.js';
-import { ArcStudy } from '../Core/ArcTypes.js';
-import { FileSystem } from '../FileSystem/FileSystem.js';
-import { LDContext } from '../ROCrate/LDContext.js';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
+import { LDGraph, LDNode } from '../ROCrate/LDObject.ts';
+import { ArcStudy } from '../Core/ArcTypes.ts';
+import { FileSystem } from '../FileSystem/FileSystem.ts';
+import { LDContext } from '../ROCrate/LDContext.ts';
 export declare class StudyConversion {
     constructor();
 }

package/dist/ts/ts/Conversion/Study.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Study.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAOjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAWzD,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAY9F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
+{"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Study.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAOjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAWjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AACzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAuB9F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAetH"}

package/dist/ts/ts/Conversion/Study.js

@@ -1,19 +1,19 @@
-import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
-import { bind, unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { class_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
+import { value, unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { tryFromString, toString } from './DateTime.js';
-import { now } from '../../node_modules/@fable-org/fable-library-js/Date.js';
+import { now } from '../../node_modules/@fable-org/fable-library-ts/Date.js';
 import { Option_fromSeq, ResizeArray_map, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
 import { ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8 } from './ScholarlyArticle.js';
-import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
+import { ArcStudy } from '../Core/ArcTypes.js';
+import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
 import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
 import { ArcTables } from '../Core/Table/ArcTables.js';
-import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
 import { Datamap } from '../Core/Datamap.js';
+import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
 import { AssayConversion_getDataFilesFromProcesses_6BABD1B0 } from './Assay.js';
 import { BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
 import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
-import { ArcStudy } from '../Core/ArcTypes.js';
-import { ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { ofSeq } from '../../node_modules/@fable-org/fable-library-ts/List.js';
 
 class StudyConversion {
   constructor() {
@@ -23,21 +23,36 @@ function StudyConversion_$reflection() {
   return class_type("ARCtrl.Conversion.StudyConversion", void 0, StudyConversion);
 }
 function StudyConversion_composeStudy_ZFE0E38E(study, fs) {
-  let collection;
-  const dateCreated = bind(tryFromString, study.SubmissionDate);
-  const datePublished = bind(tryFromString, study.PublicReleaseDate);
+  let i = void 0, collection = void 0;
+  let dateCreated;
+  const option_1 = study.SubmissionDate;
+  dateCreated = option_1 != null ? tryFromString(value(option_1)) : void 0;
+  let datePublished;
+  const option_3 = study.PublicReleaseDate;
+  datePublished = option_3 != null ? tryFromString(value(option_3)) : void 0;
   const dateModified = now();
   const publications = Option_fromSeq(ResizeArray_map(ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, study.Publications));
-  const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, study.Contacts));
+  let persons;
+  const option_5 = study.Investigation;
+  persons = option_5 != null ? (i = value(option_5), i.GetAllPersons()) : void 0;
+  const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), study.Contacts));
   const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(study.Tables), void 0, study.Identifier, unwrap(fs)), Array.from(collection)));
-  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, study.Datamap);
-  const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), processSequence);
+  let fragmentDescriptors;
+  const option_7 = study.Datamap;
+  fragmentDescriptors = option_7 != null ? DatamapConversion_composeFragmentDescriptors_Z892BFC3(value(option_7)) : void 0;
+  let dataFiles;
+  const option_9 = processSequence;
+  dataFiles = option_9 != null ? AssayConversion_getDataFilesFromProcesses_6BABD1B0(value(option_9), unwrap(fragmentDescriptors)) : void 0;
   const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, study.Comments));
   return LDDataset.createStudy(study.Identifier, void 0, unwrap(creators), unwrap(dateCreated), unwrap(datePublished), dateModified, unwrap(study.Description), unwrap(dataFiles), unwrap(study.Title), unwrap(publications), unwrap(fragmentDescriptors), unwrap(comments), void 0, unwrap(processSequence));
 }
 function StudyConversion_decomposeStudy_Z6839B9E8(study, graph, context) {
-  const dateCreated = map(toString, LDDataset.tryGetDateCreatedAsDateTime(study, unwrap(context)));
-  const datePublished = map(toString, LDDataset.tryGetDatePublishedAsDateTime(study, unwrap(context)));
+  let dateCreated;
+  const option_1 = LDDataset.tryGetDateCreatedAsDateTime(study, unwrap(context));
+  dateCreated = option_1 != null ? toString(value(option_1)) : void 0;
+  let datePublished;
+  const option_3 = LDDataset.tryGetDatePublishedAsDateTime(study, unwrap(context));
+  datePublished = option_3 != null ? toString(value(option_3)) : void 0;
   const publications = ResizeArray_map((p) => ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8(p, unwrap(graph), unwrap(context)), LDDataset.getCitations(study, unwrap(graph), unwrap(context)));
   const creators = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(study, unwrap(graph), unwrap(context)));
   let datamap;

package/dist/ts/ts/Conversion/Table.d.ts

@@ -1,12 +1,11 @@
-import { LDGraph, LDNode } from '../ROCrate/LDObject.js';
-import { CompositeCell_$union } from '../Core/Table/CompositeCell.js';
-import { CompositeHeader_$union } from '../Core/Table/CompositeHeader.js';
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { ArcTable } from '../Core/Table/ArcTable.js';
-import { LDContext } from '../ROCrate/LDContext.js';
-import { FSharpList } from '@fable-org/fable-library-js/List.js';
-import { FileSystem } from '../FileSystem/FileSystem.js';
-import { ArcTables } from '../Core/Table/ArcTables.js';
+import { LDGraph, LDNode } from '../ROCrate/LDObject.ts';
+import { CompositeCell_$union } from '../Core/Table/CompositeCell.ts';
+import { CompositeHeader_$union } from '../Core/Table/CompositeHeader.ts';
+import { ArcTable } from '../Core/Table/ArcTable.ts';
+import { LDContext } from '../ROCrate/LDContext.ts';
+import { FSharpList } from '@fable-org/fable-library-ts/List.ts';
+import { FileSystem } from '../FileSystem/FileSystem.ts';
+import { ArcTables } from '../Core/Table/ArcTables.ts';
 export declare function CompositeRow_toProtocol(tableName: string, row: Iterable<[CompositeHeader_$union, CompositeCell_$union]>): LDNode;
 /**
  * Create a new table from an ISA protocol.
@@ -21,7 +20,7 @@ export declare function ARCtrl_ArcTable__ArcTable_GetProtocols(this$: ArcTable):
 /**
  * Returns the list of processes specidified in this ArcTable
  */
-export declare function ARCtrl_ArcTable__ArcTable_GetProcesses_5E660E5C(this$: ArcTable, assayName: Option<string>, studyName: Option<string>, fs: Option<FileSystem>): FSharpList<LDNode>;
+export declare function ARCtrl_ArcTable__ArcTable_GetProcesses_5E660E5C(this$: ArcTable, assayName?: string, studyName?: string, fs?: FileSystem): FSharpList<LDNode>;
 /**
  * Create a new table from a list of processes
  *
@@ -33,7 +32,7 @@ export declare function ARCtrl_ArcTable__ArcTable_fromProcesses_Static_Z3575FB5F
 /**
  * Return a list of all the processes in all the tables.
  */
-export declare function ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(this$: ArcTables, assayName: Option<string>, studyName: Option<string>, fs: Option<FileSystem>): FSharpList<LDNode>;
+export declare function ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(this$: ArcTables, assayName?: string, studyName?: string, fs?: FileSystem): FSharpList<LDNode>;
 /**
  * Create a collection of tables from a list of processes.
  *

package/dist/ts/ts/Conversion/Table.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Table.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Table.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAGzD,OAAO,EAAE,oBAAoB,EAAiB,MAAM,gCAAgC,CAAC;AACrF,OAAO,EAAE,sBAAsB,EAAE,MAAM,kCAAkC,CAAC;AAE1E,OAAO,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAIrD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAGpD,OAAO,EAAgC,UAAU,EAAyB,MAAM,qCAAqC,CAAC;AAItH,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,4BAA4B,CAAC;AAEvD,wBAAgB,uBAAuB,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,EAAE,QAAQ,CAAC,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAAC,GAAG,MAAM,CAkGhI;AAED;;;;GAIG;AACH,wBAAgB,uDAAuD,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAqBjI;AAED;;GAEG;AACH,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,GAAG,UAAU,CAAC,MAAM,CAAC,CAyB1F;AAED;;GAEG;AACH,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,QAAQ,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC,CAQ5J;AAED;;;;;;GAMG;AACH,wBAAgB,wDAAwD,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAG7J;AAED;;GAEG;AACH,wBAAgB,iDAAiD,CAAC,KAAK,EAAE,SAAS,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC,CAE/J;AAED;;;;;;GAMG;AACH,wBAAgB,0DAA0D,CAAC,EAAE,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,SAAS,CAMlJ"}

package/dist/ts/ts/Conversion/Table.js

@@ -1,24 +1,24 @@
-import { fold, zip, toList, delay, map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { fold, zip, toList, delay, map } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { LDLabProtocol } from '../ROCrate/LDTypes/LabProtocol.js';
 import { BaseTypes_composeComponent, BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_decomposeComponent_Z2F770004 } from './Basic.js';
 import { ResizeArray_appendSingleton, ResizeArray_singleton } from '../Core/Helper/Collections.js';
-import { unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { unwrap, some, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ArcTable } from '../Core/Table/ArcTable.js';
-import { getEnumerator, disposeSafe, safeHash, equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { getEnumerator, disposeSafe, safeHash, equals } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { ARCtrl_ROCrate_LDNode__LDNode_TryGetColumnIndex } from './ColumnIndex.js';
 import { ProcessConversion_tryGetProtocolType_Z6839B9E8, ProcessConversion_getProcessGetter, ProcessConversion_processToRows_Z6839B9E8, ProcessConversion_groupProcesses_Z27F0B586 } from './Process.js';
 import { LDPropertyValue } from '../ROCrate/LDTypes/PropertyValue.js';
 import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
-import { singleton, initialize, collect, ofSeq, map as map$2 } from '../../node_modules/@fable-org/fable-library-js/List.js';
-import { List_distinct } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
+import { singleton, initialize, collect, ofSeq, map as map$1 } from '../../node_modules/@fable-org/fable-library-ts/List.js';
+import { List_distinct } from '../../node_modules/@fable-org/fable-library-ts/Seq2.js';
 import { LDLabProcess } from '../ROCrate/LDTypes/LabProcess.js';
-import { rangeDouble } from '../../node_modules/@fable-org/fable-library-js/Range.js';
+import { rangeDouble } from '../../node_modules/@fable-org/fable-library-ts/Range.js';
 import { Unchecked_alignByHeaders } from '../Core/Table/ArcTableAux.js';
 import { ArcTables } from '../Core/Table/ArcTables.js';
 
 function CompositeRow_toProtocol(tableName, row) {
   return fold((p, hc) => {
-    let matchResult, oa, v, v_1, v_2, v_3;
+    let matchResult = void 0, oa = void 0, v = void 0, v_1 = void 0, v_2 = void 0, v_3 = void 0;
     switch (hc[0].tag) {
       case /* ProtocolType */
       4: {
@@ -124,6 +124,7 @@ function CompositeRow_toProtocol(tableName, row) {
   }, LDLabProtocol.create(tableName, tableName), row);
 }
 function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_Z6839B9E8(p, graph, context) {
+  let option_1 = void 0, d = void 0, option_3 = void 0, d_1 = void 0, option_5 = void 0, d_2 = void 0, option_7 = void 0, d_3 = void 0;
   const name = LDLabProtocol.getNameAsString(p, unwrap(context));
   const t = ArcTable.init(name);
   let enumerator = getEnumerator(LDLabProtocol.getComponents(p, unwrap(graph), unwrap(context)));
@@ -136,23 +137,15 @@ function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_Z6839B9E8(p, graph, conte
   } finally {
     disposeSafe(enumerator);
   }
-  map((d) => {
-    t.AddProtocolDescriptionColumn(ResizeArray_singleton(d));
-  }, LDLabProtocol.tryGetDescriptionAsString(p, unwrap(context)));
-  map((d_1) => {
-    t.AddProtocolVersionColumn(ResizeArray_singleton(d_1));
-  }, LDLabProtocol.tryGetVersionAsString(p, unwrap(context)));
-  map((d_2) => {
-    t.AddProtocolTypeColumn(ResizeArray_singleton(d_2));
-  }, ProcessConversion_tryGetProtocolType_Z6839B9E8(p, void 0, unwrap(context)));
-  map((d_3) => {
-    t.AddProtocolUriColumn(ResizeArray_singleton(d_3));
-  }, LDLabProtocol.tryGetUrl(p, unwrap(context)));
+  option_1 = LDLabProtocol.tryGetDescriptionAsString(p, unwrap(context)), option_1 != null ? some((d = value(option_1), t.AddProtocolDescriptionColumn(ResizeArray_singleton(d)))) : void 0;
+  option_3 = LDLabProtocol.tryGetVersionAsString(p, unwrap(context)), option_3 != null ? some((d_1 = value(option_3), t.AddProtocolVersionColumn(ResizeArray_singleton(d_1)))) : void 0;
+  option_5 = ProcessConversion_tryGetProtocolType_Z6839B9E8(p, void 0, unwrap(context)), option_5 != null ? some((d_2 = value(option_5), t.AddProtocolTypeColumn(ResizeArray_singleton(d_2)))) : void 0;
+  option_7 = LDLabProtocol.tryGetUrl(p, unwrap(context)), option_7 != null ? some((d_3 = value(option_7), t.AddProtocolUriColumn(ResizeArray_singleton(d_3)))) : void 0;
   t.AddProtocolNameColumn(ResizeArray_singleton(name));
   return t;
 }
 function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
-  let source;
+  let source = void 0;
   if (this$.RowCount === 0) {
     return singleton((source = this$.Headers, fold((p, h) => {
       if (h.tag === /* Component */
@@ -173,7 +166,7 @@ function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
       return CompositeRow_toProtocol(this$.Name, row);
     }), {
       Equals: equals,
-      GetHashCode: safeHash
+      GetHashCode: (x) => safeHash(x) | 0
     });
   }
 }
@@ -182,7 +175,7 @@ function ARCtrl_ArcTable__ArcTable_GetProcesses_5E660E5C(this$, assayName, study
     return singleton(LDLabProcess.create(this$.Name));
   } else {
     const getter = ProcessConversion_getProcessGetter(assayName, studyName, this$.Name, this$.Headers, fs);
-    return toList(delay(() => map$1((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1))));
+    return toList(delay(() => map((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1))));
   }
 }
 function ARCtrl_ArcTable__ArcTable_fromProcesses_Static_Z3575FB5F(name, ps, graph, context) {
@@ -193,8 +186,8 @@ function ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(this$, assayName, stu
   return collect((t) => ARCtrl_ArcTable__ArcTable_GetProcesses_5E660E5C(t, unwrap(assayName), unwrap(studyName), unwrap(fs)), toList(this$.Tables));
 }
 function ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ps, graph, context) {
-  let collection;
-  return new ArcTables((collection = map$2((tupledArg) => {
+  let collection = void 0;
+  return new ArcTables((collection = map$1((tupledArg) => {
     const tupledArg_1 = Unchecked_alignByHeaders(true, collect((p) => ofSeq(ProcessConversion_processToRows_Z6839B9E8(p, unwrap(graph), unwrap(context))), tupledArg[1]));
     return ArcTable.fromArcTableValues(tupledArg[0], tupledArg_1[0], tupledArg_1[1]);
   }, ProcessConversion_groupProcesses_Z27F0B586(ps, unwrap(graph), unwrap(context))), Array.from(collection)));

package/dist/ts/ts/Conversion/Workflow.d.ts

@@ -1,20 +1,20 @@
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { CWLType_$union } from '../CWL/CWLTypes.js';
-import { int32 } from '@fable-org/fable-library-js/Int32.js';
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { LDGraph, LDNode } from '../ROCrate/LDObject.js';
-import { CWLInput, InputBinding } from '../CWL/Inputs.js';
-import { LDContext } from '../ROCrate/LDContext.js';
-import { CWLOutput, OutputBinding } from '../CWL/Outputs.js';
-import { Component } from '../Core/Process/Component.js';
-import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
-import { WorkflowStep, WorkflowStepRun_$union } from '../CWL/WorkflowSteps.js';
-import { CWLToolDescription } from '../CWL/ToolDescription.js';
-import { CWLExpressionToolDescription } from '../CWL/ExpressionToolDescription.js';
-import { CWLOperationDescription } from '../CWL/OperationDescription.js';
-import { CWLWorkflowDescription } from '../CWL/WorkflowDescription.js';
-import { ArcWorkflow } from '../Core/ArcTypes.js';
-import { FileSystem } from '../FileSystem/FileSystem.js';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
+import { CWLType_$union } from '../CWL/CWLTypes.ts';
+import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { LDGraph, LDNode } from '../ROCrate/LDObject.ts';
+import { CWLInput, InputBinding } from '../CWL/Inputs.ts';
+import { LDContext } from '../ROCrate/LDContext.ts';
+import { CWLOutput, OutputBinding } from '../CWL/Outputs.ts';
+import { Component } from '../Core/Process/Component.ts';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.ts';
+import { WorkflowStep, WorkflowStepRun_$union } from '../CWL/WorkflowSteps.ts';
+import { CWLToolDescription } from '../CWL/ToolDescription.ts';
+import { CWLExpressionToolDescription } from '../CWL/ExpressionToolDescription.ts';
+import { CWLOperationDescription } from '../CWL/OperationDescription.ts';
+import { CWLWorkflowDescription } from '../CWL/WorkflowDescription.ts';
+import { ArcWorkflow } from '../Core/ArcTypes.ts';
+import { FileSystem } from '../FileSystem/FileSystem.ts';
 export declare class WorkflowConversion {
     constructor();
 }

package/dist/ts/ts/Conversion/Workflow.d.ts.map

@@ -1 +1 @@
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