@nfdi4plants/arctrl 3.1.0 → 3.2.0

package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map

@@ -1 +1 @@
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package/dist/ts/ts/CWL/WorkflowSteps.js

@@ -1,16 +1,18 @@
-import { unwrap, toArray } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { Union, Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
-import { union_type, record_type, string_type, option_type, array_type, bool_type, obj_type, class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
-import { YAMLElement_$reflection } from '../fable_modules/YAMLicious.1.0.0-alpha.7/YAMLiciousTypes.fs.js';
-import { setItem } from '../../node_modules/@fable-org/fable-library-js/Array.js';
-import { filter, iterate, tryFindIndex } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { unwrap, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { Union } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { union_type, class_type, string_type, obj_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
+import { equals, arrayHash, Exception } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { dynamicPropertiesEqual, hashDynamicProperties } from './DynamicObjHelpers.js';
+import { stepInput, stepOutputParameter, workflowStep } from './CWLKnownFieldNames.js';
+import { setItem, item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
+import { filter, tryFindIndex } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 
 function LinkMergeMethod_MergeNested() {
-  return new LinkMergeMethod(0, []);
+  return LinkMergeMethod.MergeNested;
 }
 function LinkMergeMethod_MergeFlattened() {
-  return new LinkMergeMethod(1, []);
+  return LinkMergeMethod.MergeFlattened;
 }
 class LinkMergeMethod extends Union {
   constructor(tag, fields) {
@@ -21,26 +23,32 @@ class LinkMergeMethod extends Union {
   cases() {
     return ["MergeNested", "MergeFlattened"];
   }
+  static {
+    this.MergeNested = new LinkMergeMethod(0, []);
+  }
+  static {
+    this.MergeFlattened = new LinkMergeMethod(1, []);
+  }
   get AsCwlString() {
     const this$ = this;
     return this$.tag === /* MergeFlattened */
     1 ? "merge_flattened" : "merge_nested";
   }
   static tryParse(value) {
-    return value === "merge_nested" ? LinkMergeMethod_MergeNested() : value === "merge_flattened" ? LinkMergeMethod_MergeFlattened() : void 0;
+    return value === "merge_nested" ? LinkMergeMethod.MergeNested : value === "merge_flattened" ? LinkMergeMethod.MergeFlattened : void 0;
   }
 }
 function LinkMergeMethod_$reflection() {
   return union_type("ARCtrl.CWL.LinkMergeMethod", [], LinkMergeMethod, () => [[], []]);
 }
 function PickValueMethod_FirstNonNull() {
-  return new PickValueMethod(0, []);
+  return PickValueMethod.FirstNonNull;
 }
 function PickValueMethod_TheOnlyNonNull() {
-  return new PickValueMethod(1, []);
+  return PickValueMethod.TheOnlyNonNull;
 }
 function PickValueMethod_AllNonNull() {
-  return new PickValueMethod(2, []);
+  return PickValueMethod.AllNonNull;
 }
 class PickValueMethod extends Union {
   constructor(tag, fields) {
@@ -51,6 +59,15 @@ class PickValueMethod extends Union {
   cases() {
     return ["FirstNonNull", "TheOnlyNonNull", "AllNonNull"];
   }
+  static {
+    this.FirstNonNull = new PickValueMethod(0, []);
+  }
+  static {
+    this.TheOnlyNonNull = new PickValueMethod(1, []);
+  }
+  static {
+    this.AllNonNull = new PickValueMethod(2, []);
+  }
   get AsCwlString() {
     const this$ = this;
     return this$.tag === /* TheOnlyNonNull */
@@ -58,20 +75,20 @@ class PickValueMethod extends Union {
     2 ? "all_non_null" : "first_non_null";
   }
   static tryParse(value) {
-    return value === "first_non_null" ? PickValueMethod_FirstNonNull() : value === "the_only_non_null" ? PickValueMethod_TheOnlyNonNull() : value === "all_non_null" ? PickValueMethod_AllNonNull() : void 0;
+    return value === "first_non_null" ? PickValueMethod.FirstNonNull : value === "the_only_non_null" ? PickValueMethod.TheOnlyNonNull : value === "all_non_null" ? PickValueMethod.AllNonNull : void 0;
   }
 }
 function PickValueMethod_$reflection() {
   return union_type("ARCtrl.CWL.PickValueMethod", [], PickValueMethod, () => [[], [], []]);
 }
 function ScatterMethod_DotProduct() {
-  return new ScatterMethod(0, []);
+  return ScatterMethod.DotProduct;
 }
 function ScatterMethod_NestedCrossProduct() {
-  return new ScatterMethod(1, []);
+  return ScatterMethod.NestedCrossProduct;
 }
 function ScatterMethod_FlatCrossProduct() {
-  return new ScatterMethod(2, []);
+  return ScatterMethod.FlatCrossProduct;
 }
 class ScatterMethod extends Union {
   constructor(tag, fields) {
@@ -82,6 +99,15 @@ class ScatterMethod extends Union {
   cases() {
     return ["DotProduct", "NestedCrossProduct", "FlatCrossProduct"];
   }
+  static {
+    this.DotProduct = new ScatterMethod(0, []);
+  }
+  static {
+    this.NestedCrossProduct = new ScatterMethod(1, []);
+  }
+  static {
+    this.FlatCrossProduct = new ScatterMethod(2, []);
+  }
   get AsCwlString() {
     const this$ = this;
     return this$.tag === /* NestedCrossProduct */
@@ -89,50 +115,171 @@ class ScatterMethod extends Union {
     2 ? "flat_crossproduct" : "dotproduct";
   }
   static tryParse(value) {
-    return value === "dotproduct" ? ScatterMethod_DotProduct() : value === "nested_crossproduct" ? ScatterMethod_NestedCrossProduct() : value === "flat_crossproduct" ? ScatterMethod_FlatCrossProduct() : void 0;
+    return value === "dotproduct" ? ScatterMethod.DotProduct : value === "nested_crossproduct" ? ScatterMethod.NestedCrossProduct : value === "flat_crossproduct" ? ScatterMethod.FlatCrossProduct : void 0;
   }
 }
 function ScatterMethod_$reflection() {
   return union_type("ARCtrl.CWL.ScatterMethod", [], ScatterMethod, () => [[], [], []]);
 }
-class StepInput extends Record {
-  constructor(Id, Source, DefaultValue, ValueFrom, LinkMerge, PickValue, Doc, LoadContents, LoadListing, Label) {
+class StepInput extends DynamicObj {
+  constructor(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
     super();
-    this.Id = Id;
-    this.Source = Source;
-    this.DefaultValue = DefaultValue;
-    this.ValueFrom = ValueFrom;
-    this.LinkMerge = LinkMerge;
-    this.PickValue = PickValue;
-    this.Doc = Doc;
-    this.LoadContents = LoadContents;
-    this.LoadListing = LoadListing;
-    this.Label = Label;
+    this._id = id;
+    this._source = source;
+    this._defaultValue = defaultValue;
+    this._valueFrom = valueFrom;
+    this._linkMerge = linkMerge;
+    this._pickValue = pickValue;
+    this._doc = doc;
+    this._loadContents = loadContents;
+    this._loadListing = loadListing;
+    this._label = label;
+  }
+  get Id() {
+    const this$ = this;
+    return this$._id;
+  }
+  set Id(value) {
+    const this$ = this;
+    this$._id = value;
+  }
+  get Source() {
+    const this$ = this;
+    return unwrap(this$._source);
+  }
+  set Source(value) {
+    const this$ = this;
+    this$._source = value;
+  }
+  get DefaultValue() {
+    const this$ = this;
+    return unwrap(this$._defaultValue);
+  }
+  set DefaultValue(value) {
+    const this$ = this;
+    this$._defaultValue = value;
+  }
+  get ValueFrom() {
+    const this$ = this;
+    return unwrap(this$._valueFrom);
+  }
+  set ValueFrom(value) {
+    const this$ = this;
+    this$._valueFrom = value;
+  }
+  get LinkMerge() {
+    const this$ = this;
+    return unwrap(this$._linkMerge);
+  }
+  set LinkMerge(value) {
+    const this$ = this;
+    this$._linkMerge = value;
+  }
+  get PickValue() {
+    const this$ = this;
+    return unwrap(this$._pickValue);
+  }
+  set PickValue(value) {
+    const this$ = this;
+    this$._pickValue = value;
+  }
+  get Doc() {
+    const this$ = this;
+    return unwrap(this$._doc);
+  }
+  set Doc(value) {
+    const this$ = this;
+    this$._doc = value;
+  }
+  get LoadContents() {
+    const this$ = this;
+    return unwrap(this$._loadContents);
+  }
+  set LoadContents(value) {
+    const this$ = this;
+    this$._loadContents = value;
+  }
+  get LoadListing() {
+    const this$ = this;
+    return unwrap(this$._loadListing);
+  }
+  set LoadListing(value) {
+    const this$ = this;
+    this$._loadListing = value;
+  }
+  get Label() {
+    const this$ = this;
+    return unwrap(this$._label);
+  }
+  set Label(value) {
+    const this$ = this;
+    this$._label = value;
+  }
+  Equals(o) {
+    let other = void 0;
+    const this$ = this;
+    return o instanceof StepInput && (other = o, this$.Id === other.Id && equals(this$.Source, other.Source) && equals(this$.DefaultValue, other.DefaultValue) && equals(this$.ValueFrom, other.ValueFrom) && equals(this$.LinkMerge, other.LinkMerge) && equals(this$.PickValue, other.PickValue) && equals(this$.Doc, other.Doc) && equals(this$.LoadContents, other.LoadContents) && equals(this$.LoadListing, other.LoadListing) && equals(this$.Label, other.Label) && dynamicPropertiesEqual(this$, other));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return arrayHash([this$.Id, this$.Source, this$.DefaultValue, this$.ValueFrom, this$.LinkMerge, this$.PickValue, this$.Doc, this$.LoadContents, this$.LoadListing, this$.Label, hashDynamicProperties(this$)]) | 0;
   }
   static create(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
-    return new StepInput(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label);
+    return new StepInput(id, unwrap(source), unwrap(defaultValue), unwrap(valueFrom), unwrap(linkMerge), unwrap(pickValue), unwrap(doc), unwrap(loadContents), unwrap(loadListing), unwrap(label));
+  }
+  static get KnownFieldNames() {
+    return stepInput;
   }
+  /**
+   * Updates a StepInput at the given index.
+   */
   static updateAt(index, f, inputs) {
     if (index < 0 ? true : index >= inputs.length) {
-      throw new Error(`StepInput index ${index} is out of range.\\nParameter name: index`);
+      throw new Exception(`StepInput index ${index} is out of range. (Parameter 'index')`);
     }
-    setItem(inputs, index, f(inputs[index]));
+    setItem(inputs, index, f(item(index, inputs)));
   }
 }
 function StepInput_$reflection() {
-  return record_type("ARCtrl.CWL.StepInput", [], StepInput, () => [["Id", string_type], ["Source", option_type(array_type(string_type))], ["DefaultValue", option_type(YAMLElement_$reflection())], ["ValueFrom", option_type(string_type)], ["LinkMerge", option_type(LinkMergeMethod_$reflection())], ["PickValue", option_type(PickValueMethod_$reflection())], ["Doc", option_type(string_type)], ["LoadContents", option_type(bool_type)], ["LoadListing", option_type(string_type)], ["Label", option_type(string_type)]]);
+  return class_type("ARCtrl.CWL.StepInput", void 0, StepInput, DynamicObj_$reflection());
 }
-class StepOutputParameter extends Record {
-  constructor(Id) {
+function StepInput_$ctor_Z25C6E1C5(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
+  return new StepInput(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label);
+}
+class StepOutputParameter extends DynamicObj {
+  constructor(id) {
     super();
-    this.Id = Id;
+    this._id = id;
+  }
+  get Id() {
+    const this$ = this;
+    return this$._id;
+  }
+  set Id(value) {
+    const this$ = this;
+    this$._id = value;
+  }
+  Equals(o) {
+    let other = void 0;
+    const this$ = this;
+    return o instanceof StepOutputParameter && (other = o, this$.Id === other.Id && dynamicPropertiesEqual(this$, other));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return arrayHash([this$.Id, hashDynamicProperties(this$)]) | 0;
   }
   static create(id) {
     return new StepOutputParameter(id);
   }
+  static get KnownFieldNames() {
+    return stepOutputParameter;
+  }
 }
 function StepOutputParameter_$reflection() {
-  return record_type("ARCtrl.CWL.StepOutputParameter", [], StepOutputParameter, () => [["Id", string_type]]);
+  return class_type("ARCtrl.CWL.StepOutputParameter", void 0, StepOutputParameter, DynamicObj_$reflection());
+}
+function StepOutputParameter_$ctor_Z721C83C5(id) {
+  return new StepOutputParameter(id);
 }
 function StepOutput_StepOutputString(Item) {
   return new StepOutput(0, [Item]);
@@ -287,24 +434,42 @@ class WorkflowStep extends DynamicObj {
   static fromRunPath(id, in_, out_, runPath, label, doc, scatter, scatterMethod, when_, requirements, hints) {
     return new WorkflowStep(id, in_, out_, WorkflowStepRun_RunString(runPath), unwrap(label), unwrap(doc), unwrap(scatter), unwrap(scatterMethod), unwrap(when_), unwrap(requirements), unwrap(hints));
   }
+  static get KnownFieldNames() {
+    return workflowStep;
+  }
+  /**
+   * Updates a workflow step input by index.
+   */
   static updateInputAt(index, f, step) {
     const inputs = step.In;
     StepInput.updateAt(index, f, inputs);
   }
+  /**
+   * Adds a new StepInput to a workflow step.
+   */
   static addInput(input, step) {
     void step.In.push(input);
   }
+  /**
+   * Removes all StepInputs matching the provided id.
+   * Reassigns step.In to a new filtered ResizeArray.
+   */
   static removeInputsById(id, step) {
     let remaining;
     const collection = filter((i) => i.Id !== id, step.In);
     remaining = Array.from(collection);
     step.In = remaining;
   }
+  /**
+   * Updates the first StepInput matching the provided id.
+   */
   static updateInputById(id, f, step) {
-    iterate((i_1) => {
+    const option_1 = tryFindIndex((i) => i.Id === id, step.In);
+    if (option_1 != null) {
+      const i_1 = value(option_1) | 0;
       const inputs = step.In;
       StepInput.updateAt(i_1, f, inputs);
-    }, toArray(tryFindIndex((i) => i.Id === id, step.In)));
+    }
   }
 }
 function WorkflowStep_$reflection() {
@@ -314,4 +479,4 @@ function WorkflowStep_$ctor_Z76380C57(id, in_, out_, run, label, doc, scatter, s
   return new WorkflowStep(id, in_, out_, run, label, doc, scatter, scatterMethod, when_, requirements, hints);
 }
 
-export { LinkMergeMethod, LinkMergeMethod_$reflection, LinkMergeMethod_MergeFlattened, LinkMergeMethod_MergeNested, PickValueMethod, PickValueMethod_$reflection, PickValueMethod_AllNonNull, PickValueMethod_FirstNonNull, PickValueMethod_TheOnlyNonNull, ScatterMethod, ScatterMethod_$reflection, ScatterMethod_DotProduct, ScatterMethod_FlatCrossProduct, ScatterMethod_NestedCrossProduct, StepInput, StepInput_$reflection, StepOutput, StepOutputParameter, StepOutputParameter_$reflection, StepOutput_$reflection, StepOutput_StepOutputRecord, StepOutput_StepOutputString, WorkflowStep, WorkflowStepRun, WorkflowStepRun_$reflection, WorkflowStepRun_RunCommandLineTool, WorkflowStepRun_RunExpressionTool, WorkflowStepRun_RunOperation, WorkflowStepRun_RunString, WorkflowStepRun_RunWorkflow, WorkflowStep_$ctor_Z76380C57, WorkflowStep_$reflection };
+export { LinkMergeMethod, LinkMergeMethod_$reflection, LinkMergeMethod_MergeFlattened, LinkMergeMethod_MergeNested, PickValueMethod, PickValueMethod_$reflection, PickValueMethod_AllNonNull, PickValueMethod_FirstNonNull, PickValueMethod_TheOnlyNonNull, ScatterMethod, ScatterMethod_$reflection, ScatterMethod_DotProduct, ScatterMethod_FlatCrossProduct, ScatterMethod_NestedCrossProduct, StepInput, StepInput_$ctor_Z25C6E1C5, StepInput_$reflection, StepOutput, StepOutputParameter, StepOutputParameter_$ctor_Z721C83C5, StepOutputParameter_$reflection, StepOutput_$reflection, StepOutput_StepOutputRecord, StepOutput_StepOutputString, WorkflowStep, WorkflowStepRun, WorkflowStepRun_$reflection, WorkflowStepRun_RunCommandLineTool, WorkflowStepRun_RunExpressionTool, WorkflowStepRun_RunOperation, WorkflowStepRun_RunString, WorkflowStepRun_RunWorkflow, WorkflowStep_$ctor_Z76380C57, WorkflowStep_$reflection };

package/dist/ts/ts/CWLRunResolver.d.ts

@@ -1,12 +1,12 @@
-import { Record } from '@fable-org/fable-library-js/Types.js';
-import { FSharpMap } from '@fable-org/fable-library-js/Map.js';
-import { CWLProcessingUnit_$union } from './CWL/CWLProcessingUnit.js';
-import { IEquatable } from '@fable-org/fable-library-js/Util.js';
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { WorkflowStepRun_$union } from './CWL/WorkflowSteps.js';
-import { FSharpSet } from '@fable-org/fable-library-js/Set.js';
-import { CWLWorkflowDescription } from './CWL/WorkflowDescription.js';
-import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Record } from '@fable-org/fable-library-ts/Types.ts';
+import { FSharpMap } from '@fable-org/fable-library-ts/Map.ts';
+import { CWLProcessingUnit_$union } from './CWL/CWLProcessingUnit.ts';
+import { MutableArray, IEquatable } from '@fable-org/fable-library-ts/Util.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
+import { CWLWorkflowDescription } from './CWL/WorkflowDescription.ts';
+import { WorkflowStepRun_$union } from './CWL/WorkflowSteps.ts';
+import { FSharpSet } from '@fable-org/fable-library-ts/Set.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
 /**
  * Normalizes a file path for use as a lookup key.
  */
@@ -19,8 +19,8 @@ export declare function RunResolutionState_$reflection(): TypeInfo;
 /**
  * Generates candidate lookup paths for a .cwl run reference relative to a workflow file.
  */
-export declare function getRunNodeCandidates(workflowFilePath: string, runPath: string): string[];
-export declare function cacheResolvedProcessingUnit(state: RunResolutionState, candidateKeys: string[], processingUnit: CWLProcessingUnit_$union): void;
+export declare function getRunNodeCandidates(workflowFilePath: string, runPath: string): MutableArray<string>;
+export declare function cacheResolvedProcessingUnit(state: RunResolutionState, candidateKeys: MutableArray<string>, processingUnit: CWLProcessingUnit_$union): void;
 export declare function runFromProcessingUnit(processingUnit: CWLProcessingUnit_$union): WorkflowStepRun_$union;
 /**
  * Iterates all steps in a workflow and resolves each step's run field recursively.

package/dist/ts/ts/CWLRunResolver.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"CWLRunResolver.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/CWLRunResolver.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,MAAM,EAAE,MAAM,sCAAsC,CAAC;AAC9D,OAAO,EAA6C,SAAS,EAAE,MAAM,oCAAoC,CAAC;AAC1G,OAAO,EAA0P,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AAC9T,OAAO,EAAiD,YAAY,EAAc,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC1I,OAAO,EAAwC,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAK3G,OAAO,EAAE,sBAAsB,EAAE,MAAM,8BAA8B,CAAC;AAItE,OAAO,EAA2C,sBAAsB,EAAE,MAAM,wBAAwB,CAAC;AACzG,OAAO,EAAyD,SAAS,EAAE,MAAM,oCAAoC,CAAC;AACtH,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAEtE;;GAEG;AACH,wBAAgB,OAAO,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAE5C;AAED,qBAAa,kBAAmB,SAAQ,MAAO,YAAW,UAAU,CAAC,kBAAkB,CAAC;IACpF,KAAK,EAAE,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC,CAAC;gBACvC,KAAK,EAAE,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC;CAIjE;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,gBAAgB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,YAAY,CAAC,MAAM,CAAC,CAmBpG;AAED,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,kBAAkB,EAAE,aAAa,EAAE,YAAY,CAAC,MAAM,CAAC,EAAE,cAAc,EAAE,wBAAwB,GAAG,IAAI,CAK1J;AAED,wBAAgB,qBAAqB,CAAC,cAAc,EAAE,wBAAwB,GAAG,sBAAsB,CAWtG;AAED;;GAEG;AACH,wBAAgB,wCAAwC,CAAC,gBAAgB,EAAE,MAAM,EAAE,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,kBAAkB,EAAE,QAAQ,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,IAAI,CAYhQ;AAED;;GAEG;AACH,wBAAgB,2CAA2C,CAAC,gBAAgB,EAAE,MAAM,EAAE,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,kBAAkB,EAAE,GAAG,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,sBAAsB,CAwEhR;AAED;;;;;GAKG;AACH,wBAAgB,8BAA8B,CAAC,gBAAgB,EAAE,MAAM,EAAE,cAAc,EAAE,wBAAwB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,wBAAwB,CAmBpN;AAED;;;GAGG;AACH,wBAAgB,gCAAgC,CAAC,gBAAgB,EAAE,MAAM,EAAE,GAAG,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,sBAAsB,CAOvM"}

package/dist/ts/ts/CWLRunResolver.js

@@ -1,15 +1,15 @@
 import { normalizePathKey, normalize, resolvePathFromFile } from './FileSystem/Path.js';
-import { Record } from '../node_modules/@fable-org/fable-library-js/Types.js';
-import { FSharpMap__Add, FSharpMap__TryFind, empty } from '../node_modules/@fable-org/fable-library-js/Map.js';
+import { Record } from '../node_modules/@fable-org/fable-library-ts/Types.js';
+import { FSharpMap__Add, FSharpMap__TryFind, empty } from '../node_modules/@fable-org/fable-library-ts/Map.js';
 import { CWLProcessingUnit_$reflection, WorkflowStepRunOps_fromTool, WorkflowStepRunOps_fromOperation, WorkflowStepRunOps_fromExpressionTool, WorkflowStepRunOps_fromWorkflow, CWLProcessingUnit_Workflow, WorkflowStepRunOps_tryGetWorkflow } from './CWL/CWLProcessingUnit.js';
-import { stringHash, getEnumerator, disposeSafe, comparePrimitives } from '../node_modules/@fable-org/fable-library-js/Util.js';
-import { record_type, class_type, string_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
-import { isNullOrWhiteSpace, endsWith } from '../node_modules/@fable-org/fable-library-js/String.js';
-import { Array_distinct } from '../node_modules/@fable-org/fable-library-js/Seq2.js';
-import { item, map } from '../node_modules/@fable-org/fable-library-js/Array.js';
+import { stringHash, getEnumerator, disposeSafe, comparePrimitives } from '../node_modules/@fable-org/fable-library-ts/Util.js';
+import { record_type, class_type, string_type } from '../node_modules/@fable-org/fable-library-ts/Reflection.js';
+import { isNullOrWhiteSpace, endsWith } from '../node_modules/@fable-org/fable-library-ts/String.js';
+import { Array_distinct } from '../node_modules/@fable-org/fable-library-ts/Seq2.js';
+import { item, map } from '../node_modules/@fable-org/fable-library-ts/Array.js';
 import { WorkflowStepRun_RunString } from './CWL/WorkflowSteps.js';
-import { FSharpSet__Contains, FSharpSet__Add, empty as empty$1 } from '../node_modules/@fable-org/fable-library-js/Set.js';
-import { value } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { FSharpSet__Contains, FSharpSet__Add, empty as empty$1 } from '../node_modules/@fable-org/fable-library-ts/Set.js';
+import { value } from '../node_modules/@fable-org/fable-library-ts/Option.js';
 
 function pathKey(path) {
   return normalizePathKey(path);
@@ -24,7 +24,7 @@ function RunResolutionState_$reflection() {
   return record_type("ARCtrl.CWLRunResolver.RunResolutionState", [], RunResolutionState, () => [["Cache", class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, CWLProcessingUnit_$reflection()])]]);
 }
 function getRunNodeCandidates(workflowFilePath, runPath) {
-  let array;
+  let array = void 0;
   if (isNullOrWhiteSpace(runPath)) {
     return [];
   } else {
@@ -36,7 +36,7 @@ function getRunNodeCandidates(workflowFilePath, runPath) {
       const runPathInWorkflowDirectory = resolvePathFromFile(workflowFilePath, trimmedRunPath);
       return Array_distinct((array = [trimmedRunPath, normalizedRunPath, runPathInWorkflowDirectory, normalize(runPathInWorkflowDirectory)], array.filter((p) => !isNullOrWhiteSpace(p))), {
         Equals: (x, y) => x === y,
-        GetHashCode: stringHash
+        GetHashCode: (x) => stringHash(x) | 0
       });
     }
   }
@@ -101,7 +101,7 @@ function resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, activePat
       const candidates = getRunNodeCandidates(workflowFilePath, runPath);
       const candidateKeys = Array_distinct(map(pathKey, candidates), {
         Equals: (x, y) => x === y,
-        GetHashCode: stringHash
+        GetHashCode: (x) => stringHash(x) | 0
       });
       const tryResolveCandidate = (index_mut) => {
         tryResolveCandidate:
@@ -160,10 +160,10 @@ function resolveRunReferencesFromLookup(workflowFilePath, processingUnit, tryRes
     default: {
       const workflow = processingUnit.fields[0];
       const state = new RunResolutionState(empty({
-        Compare: comparePrimitives
+        Compare: (x, y) => comparePrimitives(x, y) | 0
       }));
       resolveWorkflowRunsRecursiveWithResolver(workflowFilePath, empty$1({
-        Compare: comparePrimitives
+        Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
       }), state, workflow, tryResolveRunPath);
       return CWLProcessingUnit_Workflow(workflow);
     }
@@ -171,10 +171,10 @@ function resolveRunReferencesFromLookup(workflowFilePath, processingUnit, tryRes
 }
 function resolveWorkflowStepRunFromLookup(workflowFilePath, run, tryResolveRunPath) {
   const state = new RunResolutionState(empty({
-    Compare: comparePrimitives
+    Compare: (x, y) => comparePrimitives(x, y) | 0
   }));
   return resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, empty$1({
-    Compare: comparePrimitives
+    Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
   }), state, run, tryResolveRunPath);
 }
 

package/dist/ts/ts/Contract/ARC.d.ts

@@ -1,5 +1,5 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
 /**
  * Tries to create READ contract with DTOType = ISA_Assay, ISA_Study or ISA_Investigation from given path relative to ARC root.
  */

package/dist/ts/ts/Contract/ARC.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAyEzE"}
+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAyEzE"}

package/dist/ts/ts/Contract/ARC.js

@@ -1,6 +1,6 @@
 import { split } from '../FileSystem/Path.js';
 import { $007CInvestigationPath$007C_$007C } from './ArcInvestigation.js';
-import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Contract } from './Contract.js';
 import { $007CAssayPath$007C_$007C } from './ArcAssay.js';
 import { $007CStudyPath$007C_$007C } from './ArcStudy.js';

package/dist/ts/ts/Contract/ArcAssay.d.ts

@@ -1,12 +1,13 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
-import { ArcAssay } from '../Core/ArcTypes.js';
-export declare function $007CAssayPath$007C_$007C(input: string[]): Option<string>;
-export declare function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$: ArcAssay, WithFolder: Option<boolean>): Contract[];
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
+import { ArcAssay } from '../Core/ArcTypes.ts';
+export declare function $007CAssayPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$: ArcAssay, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$: ArcAssay): Contract;
 export declare function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$: ArcAssay): Contract;
 export declare function ARCtrl_ArcAssay__ArcAssay_toDeleteContract_Static_1501C0F8(assay: ArcAssay): Contract;
-export declare function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay: ArcAssay, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay: ArcAssay, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcAssay__ArcAssay_toUpdateContract_Static_1501C0F8(assay: ArcAssay): Contract;
 export declare function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcAssay>;
 //# sourceMappingURL=ArcAssay.d.ts.map

package/dist/ts/ts/Contract/ArcAssay.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ArcAssay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcAssay.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAa,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAG/C,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BrF;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAQjI;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAEzI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,CAmC3G"}