npm - @nfdi4plants/arctrl - Versions diffs - 3.0.1 → 3.1.0 - Mend

@nfdi4plants/arctrl 3.0.1 → 3.1.0

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Files changed (80) hide show

package/dist/ts/ts/CWL/Encode.js CHANGED Viewed

@@ -2,14 +2,14 @@ import { FSharpChoice$2_Choice1Of2, FSharpChoice$2_Choice2Of2 } from '../../node
 import { map, value, bind, filter } from '../../node_modules/@fable-org/fable-library-js/Option.js';
 import { toList, map as map$2, choose as choose$1, fold, delay, append as append$1, singleton as singleton$1, empty as empty$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { isEmpty, head, tail, map as map$1, singleton, ofArray, empty, append, ofSeq, choose, exists, cons, filter as filter$1, contains, tryFind, reverse, length } from '../../node_modules/@fable-org/fable-library-js/List.js';
-import { YAMLElement_Value, YAMLContent_create_Z1C3A29C9, YAMLElement_Object, YAMLElement_Mapping, ScalarStyle_Block, BlockScalarStyle_Literal, ChompingMode_Clip, ScalarStyle_DoubleQuoted, YAMLElement_Sequence, YAMLElement, Config } from '../fable_modules/YAMLicious.1.0.0-alpha.4/YAMLiciousTypes.fs.js';
+import { YAMLElement_Value, YAMLContent_create_Z1C3A29C9, YAMLElement_Object, YAMLElement_Mapping, ScalarStyle_Block, BlockScalarStyle_Literal, ChompingMode_Clip, ScalarStyle_DoubleQuoted, YAMLElement_Sequence, YAMLElement, Config } from '../fable_modules/YAMLicious.1.0.0-alpha.7/YAMLiciousTypes.fs.js';
 import { trimEnd, replace, toText, interpolate, trimStart, join, split } from '../../node_modules/@fable-org/fable-library-js/String.js';
-import { string, int, float } from '../fable_modules/YAMLicious.1.0.0-alpha.4/Encode.fs.js';
+import { string, int, float } from '../fable_modules/YAMLicious.1.0.0-alpha.7/Encode.fs.js';
 import { LoadListingEnum_get_toCwlString } from './Requirements.js';
 import { int64ToString, stringHash, comparePrimitives } from '../../node_modules/@fable-org/fable-library-js/Util.js';
 import { WorkflowStepRunOps_tryGetOperation, WorkflowStepRunOps_tryGetExpressionTool, WorkflowStepRunOps_tryGetWorkflow, WorkflowStepRunOps_tryGetTool } from './CWLProcessingUnit.js';
 import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
-import { write } from '../fable_modules/YAMLicious.1.0.0-alpha.4/Writer.fs.js';
+import { write } from '../fable_modules/YAMLicious.1.0.0-alpha.7/Writer.fs.js';
 import { ofList, FSharpSet__Contains } from '../../node_modules/@fable-org/fable-library-js/Set.js';
 function $007CPrimitiveType$007CComplexType$007C(t) {
@@ -166,7 +166,9 @@ function yMap(pairs) {
   return YAMLElement_Object(map$1((tupledArg) => {
     let _arg, single;
     return YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9(tupledArg[0]), (_arg = tupledArg[1], _arg.tag === /* Object */
-    3 ? !isEmpty(_arg.fields[0]) ? isEmpty(tail(_arg.fields[0])) ? (single = head(_arg.fields[0]), single) : _arg : YAMLElement_Value(YAMLContent_create_Z1C3A29C9("{}")) : _arg));
+    3 ? !isEmpty(_arg.fields[0]) ? head(_arg.fields[0]).tag === /* Value */
+    1 ? isEmpty(tail(_arg.fields[0])) ? _arg : _arg : head(_arg.fields[0]).tag === /* Alias */
+    7 ? isEmpty(tail(_arg.fields[0])) ? _arg : _arg : isEmpty(tail(_arg.fields[0])) ? (single = head(_arg.fields[0]), single) : _arg : YAMLElement_Value(YAMLContent_create_Z1C3A29C9("{}")) : _arg));
   }, pairs));
 }
 function normalizeDocString(doc) {
@@ -735,7 +737,7 @@ function encodeSchemaDefRequirementType(s) {
   return yMap(ofArray([["name", string(s.Name)], ["type", encodeCWLType(s.Type_)]]));
 }
 function encodeRequirement(r) {
-  let value_20, acc_13, value_17, acc_11, value_14, acc_9, value_11, acc_7, value_8, acc_5, value_5, acc_3, value_2, acc_1;
+  let value_23, acc_15, value_20, acc_13, value_17, acc_11, value_14, acc_9, value_11, acc_7, value_8, acc_5, value_5, acc_3, value_2, acc_1;
   switch (r.tag) {
     case /* SchemaDefRequirement */
     1: {
@@ -745,14 +747,14 @@ function encodeRequirement(r) {
     case /* DockerRequirement */
     2: {
       const dr = r.fields[0];
-      return yMap((value_20 = dr.DockerOutputDirectory, acc_13 = (value_17 = dr.DockerImport, acc_11 = (value_14 = dr.DockerLoad, acc_9 = (value_11 = dr.DockerImageId, acc_7 = (value_8 = dr.DockerFile, acc_5 = (value_5 = dr.DockerPull, acc_3 = singleton(["class", string("DockerRequirement")]), value_5 == null ? acc_3 : append(acc_3, singleton(["dockerPull", string(value(value_5))]))), value_8 == null ? acc_5 : append(acc_5, singleton(["dockerFile", encodeSchemaSaladString(value(value_8))]))), value_11 == null ? acc_7 : append(acc_7, singleton(["dockerImageId", string(value(value_11))]))), value_14 == null ? acc_9 : append(acc_9, singleton(["dockerLoad", string(value(value_14))]))), value_17 == null ? acc_11 : append(acc_11, singleton(["dockerImport", string(value(value_17))]))), value_20 == null ? acc_13 : append(acc_13, singleton(["dockerOutputDirectory", string(value(value_20))]))));
+      return yMap((value_23 = dr.DockerRunOptions, acc_15 = (value_20 = dr.DockerOutputDirectory, acc_13 = (value_17 = dr.DockerImport, acc_11 = (value_14 = dr.DockerLoad, acc_9 = (value_11 = dr.DockerImageId, acc_7 = (value_8 = dr.DockerFile, acc_5 = (value_5 = dr.DockerPull, acc_3 = singleton(["class", string("DockerRequirement")]), value_5 == null ? acc_3 : append(acc_3, singleton(["dockerPull", string(value(value_5))]))), value_8 == null ? acc_5 : append(acc_5, singleton(["dockerFile", encodeSchemaSaladString(value(value_8))]))), value_11 == null ? acc_7 : append(acc_7, singleton(["dockerImageId", string(value(value_11))]))), value_14 == null ? acc_9 : append(acc_9, singleton(["dockerLoad", string(value(value_14))]))), value_17 == null ? acc_11 : append(acc_11, singleton(["dockerImport", string(value(value_17))]))), value_20 == null ? acc_13 : append(acc_13, singleton(["dockerOutputDirectory", string(value(value_20))]))), value_23 == null ? acc_15 : append(acc_15, singleton(["cwltool:dockerRunOptions", YAMLElement_Sequence(ofSeq(map$2(string, value(value_23))))]))));
     }
     case /* SoftwareRequirement */
     3: {
       const pkgs = r.fields[0];
       return yMap(ofArray([["class", string("SoftwareRequirement")], ["packages", YAMLElement_Sequence(ofSeq(map$2((p) => {
-        let value_26, acc_18, value_23, acc_16;
-        return yMap((value_26 = p.Specs, acc_18 = (value_23 = p.Version, acc_16 = append(empty(), singleton(["package", string(p.Package)])), value_23 == null ? acc_16 : append(acc_16, singleton(["version", YAMLElement_Sequence(ofSeq(map$2(string, value(value_23))))]))), value_26 == null ? acc_18 : append(acc_18, singleton(["specs", YAMLElement_Sequence(ofSeq(map$2(string, value(value_26))))]))));
+        let value_29, acc_20, value_26, acc_18;
+        return yMap((value_29 = p.Specs, acc_20 = (value_26 = p.Version, acc_18 = append(empty(), singleton(["package", string(p.Package)])), value_26 == null ? acc_18 : append(acc_18, singleton(["version", YAMLElement_Sequence(ofSeq(map$2(string, value(value_26))))]))), value_29 == null ? acc_20 : append(acc_20, singleton(["specs", YAMLElement_Sequence(ofSeq(map$2(string, value(value_29))))]))));
       }, pkgs)))]]));
     }
     case /* LoadListingRequirement */
@@ -789,7 +791,7 @@ function encodeRequirement(r) {
         }
       };
       return yMap(ofArray([["class", string("InitialWorkDirRequirement")], ["listing", YAMLElement_Sequence(ofSeq(map$2((_arg_1) => {
-        let value_31, acc_23, value_29, acc_20;
+        let value_34, acc_25, value_32, acc_22;
         switch (_arg_1.tag) {
           case /* StringEntry */
           1:
@@ -806,7 +808,7 @@ function encodeRequirement(r) {
           }
           default: {
             const d = _arg_1.fields[0];
-            return yMap((value_31 = d.Writable, acc_23 = append((value_29 = d.Entryname, acc_20 = empty(), value_29 == null ? acc_20 : append(acc_20, singleton(["entryname", encodeSchemaSaladString(value(value_29))]))), singleton(["entry", encodeSchemaSaladString(d.Entry)])), value_31 == null ? acc_23 : append(acc_23, singleton(["writable", yBool(value(value_31))]))));
+            return yMap((value_34 = d.Writable, acc_25 = append((value_32 = d.Entryname, acc_22 = empty(), value_32 == null ? acc_22 : append(acc_22, singleton(["entryname", encodeSchemaSaladString(value(value_32))]))), singleton(["entry", encodeSchemaSaladString(d.Entry)])), value_34 == null ? acc_25 : append(acc_25, singleton(["writable", yBool(value(value_34))]))));
           }
         }
       }, listing)))]]));
@@ -815,8 +817,8 @@ function encodeRequirement(r) {
     6: {
       const envs = r.fields[0];
       return yMap(ofArray([["class", string("EnvVarRequirement")], ["envDef", YAMLElement_Sequence(ofSeq(map$2((e) => {
-        const v_11 = normalizeEnvValueForEncode(e.EnvValue);
-        return yMap(ofArray([["envName", string(e.EnvName)], ["envValue", string(v_11)]]));
+        const v_12 = normalizeEnvValueForEncode(e.EnvValue);
+        return yMap(ofArray([["envName", string(e.EnvName)], ["envValue", string(v_12)]]));
       }, envs)))]]));
     }
     case /* ShellCommandRequirement */
@@ -825,17 +827,17 @@ function encodeRequirement(r) {
     case /* ResourceRequirement */
     8: {
       const rr = r.fields[0];
-      const tryEncodeScalar = (key, value_32) => {
-        if (typeof value_32 === "number") {
-          return [key, int(value_32)];
-        } else if (typeof value_32 === "bigint") {
-          return [key, YAMLElement_Value(YAMLContent_create_Z1C3A29C9(int64ToString(value_32)))];
-        } else if (typeof value_32 === "number") {
-          return [key, float(value_32)];
-        } else if (typeof value_32 === "string") {
-          return [key, string(value_32)];
-        } else if (typeof value_32 === "boolean") {
-          return [key, yBool(value_32)];
+      const tryEncodeScalar = (key, value_35) => {
+        if (typeof value_35 === "number") {
+          return [key, int(value_35)];
+        } else if (typeof value_35 === "bigint") {
+          return [key, YAMLElement_Value(YAMLContent_create_Z1C3A29C9(int64ToString(value_35)))];
+        } else if (typeof value_35 === "number") {
+          return [key, float(value_35)];
+        } else if (typeof value_35 === "string") {
+          return [key, string(value_35)];
+        } else if (typeof value_35 === "boolean") {
+          return [key, yBool(value_35)];
         } else {
           return void 0;
         }
@@ -1051,18 +1053,22 @@ function encodeWorkflowStepRun(run) {
 function encodeToolDescriptionElement(td) {
   let h, r, bc, matchValue_3, i, i_1, matchValue_4, md;
   let basePairs;
+  let acc_6;
   let acc_4;
   let acc_2;
   const acc = ofArray([["cwlVersion", string(td.CWLVersion)], ["class", string("CommandLineTool")]]);
-  const pairOpt_1 = map(encodeLabel, td.Label);
+  const pairOpt_1 = map((id) => ["id", string(id)], td.Id);
   const acc_1 = acc;
   acc_2 = pairOpt_1 == null ? acc_1 : append(acc_1, singleton(value(pairOpt_1)));
-  const pairOpt_3 = map(encodeDoc, td.Doc);
+  const pairOpt_3 = map(encodeLabel, td.Label);
   const acc_3 = acc_2;
   acc_4 = pairOpt_3 == null ? acc_3 : append(acc_3, singleton(value(pairOpt_3)));
-  const pairOpt_5 = map(encodeIntent, filter((intent) => intent.length > 0, td.Intent));
+  const pairOpt_5 = map(encodeDoc, td.Doc);
   const acc_5 = acc_4;
-  basePairs = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  acc_6 = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  const pairOpt_7 = map(encodeIntent, filter((intent) => intent.length > 0, td.Intent));
+  const acc_7 = acc_6;
+  basePairs = pairOpt_7 == null ? acc_7 : append(acc_7, singleton(value(pairOpt_7)));
   let withHints;
   const matchValue = td.Hints;
   let matchResult, h_1;
@@ -1127,26 +1133,30 @@ function encodeToolDescriptionElement(td) {
       withBaseCommand = withRequirements;
   }
   const withOutputs = append((matchValue_3 = td.Inputs, matchValue_3 != null ? (i = value(matchValue_3), i.length > 0) ? (i_1 = value(matchValue_3), append(withBaseCommand, singleton(["inputs", yMap(toList(map$2(encodeCWLInput, i_1)))]))) : withBaseCommand : withBaseCommand), singleton(["outputs", yMap(toList(map$2(encodeCWLOutput, td.Outputs)))]));
-  return yMap((matchValue_4 = td.Metadata, matchValue_4 == null ? withOutputs : (md = value(matchValue_4), fold((acc_6, kvp) => {
+  return yMap((matchValue_4 = td.Metadata, matchValue_4 == null ? withOutputs : (md = value(matchValue_4), fold((acc_8, kvp) => {
     let matchValue_5;
-    return append(acc_6, singleton([kvp[0], (matchValue_5 = kvp[1], typeof matchValue_5 === "string" ? string(matchValue_5) : typeof matchValue_5 === "boolean" ? yBool(matchValue_5) : typeof matchValue_5 === "number" ? int(matchValue_5) : typeof matchValue_5 === "number" ? float(matchValue_5) : matchValue_5 instanceof YAMLElement ? matchValue_5 : string(toString(kvp[1])))]));
+    return append(acc_8, singleton([kvp[0], (matchValue_5 = kvp[1], typeof matchValue_5 === "string" ? string(matchValue_5) : typeof matchValue_5 === "boolean" ? yBool(matchValue_5) : typeof matchValue_5 === "number" ? int(matchValue_5) : typeof matchValue_5 === "number" ? float(matchValue_5) : matchValue_5 instanceof YAMLElement ? matchValue_5 : string(toString(kvp[1])))]));
   }, withOutputs, md.GetProperties(false)))));
 }
 function encodeExpressionToolDescriptionElement(et) {
   let h, r, matchValue_2, i, i_1, matchValue_3, md;
   let basePairs;
+  let acc_6;
   let acc_4;
   let acc_2;
   const acc = ofArray([["cwlVersion", string(et.CWLVersion)], ["class", string("ExpressionTool")]]);
-  const pairOpt_1 = map(encodeLabel, et.Label);
+  const pairOpt_1 = map((id) => ["id", string(id)], et.Id);
   const acc_1 = acc;
   acc_2 = pairOpt_1 == null ? acc_1 : append(acc_1, singleton(value(pairOpt_1)));
-  const pairOpt_3 = map(encodeDoc, et.Doc);
+  const pairOpt_3 = map(encodeLabel, et.Label);
   const acc_3 = acc_2;
   acc_4 = pairOpt_3 == null ? acc_3 : append(acc_3, singleton(value(pairOpt_3)));
-  const pairOpt_5 = map(encodeIntent, filter((intent) => intent.length > 0, et.Intent));
+  const pairOpt_5 = map(encodeDoc, et.Doc);
   const acc_5 = acc_4;
-  basePairs = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  acc_6 = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  const pairOpt_7 = map(encodeIntent, filter((intent) => intent.length > 0, et.Intent));
+  const acc_7 = acc_6;
+  basePairs = pairOpt_7 == null ? acc_7 : append(acc_7, singleton(value(pairOpt_7)));
   let withHints;
   const matchValue = et.Hints;
   let matchResult, h_1;
@@ -1190,26 +1200,30 @@ function encodeExpressionToolDescriptionElement(et) {
       withRequirements = withHints;
   }
   const withExpression = append(append((matchValue_2 = et.Inputs, matchValue_2 != null ? (i = value(matchValue_2), i.length > 0) ? (i_1 = value(matchValue_2), append(withRequirements, singleton(["inputs", yMap(toList(map$2(encodeCWLInput, i_1)))]))) : withRequirements : withRequirements), singleton(["outputs", yMap(toList(map$2(encodeCWLOutput, et.Outputs)))])), singleton(["expression", encodeExpressionScalar(et.Expression)]));
-  return yMap((matchValue_3 = et.Metadata, matchValue_3 == null ? withExpression : (md = value(matchValue_3), fold((acc_6, kvp) => {
+  return yMap((matchValue_3 = et.Metadata, matchValue_3 == null ? withExpression : (md = value(matchValue_3), fold((acc_8, kvp) => {
     let matchValue_4;
-    return append(acc_6, singleton([kvp[0], (matchValue_4 = kvp[1], typeof matchValue_4 === "string" ? string(matchValue_4) : typeof matchValue_4 === "boolean" ? yBool(matchValue_4) : typeof matchValue_4 === "number" ? int(matchValue_4) : typeof matchValue_4 === "number" ? float(matchValue_4) : matchValue_4 instanceof YAMLElement ? matchValue_4 : string(toString(kvp[1])))]));
+    return append(acc_8, singleton([kvp[0], (matchValue_4 = kvp[1], typeof matchValue_4 === "string" ? string(matchValue_4) : typeof matchValue_4 === "boolean" ? yBool(matchValue_4) : typeof matchValue_4 === "number" ? int(matchValue_4) : typeof matchValue_4 === "number" ? float(matchValue_4) : matchValue_4 instanceof YAMLElement ? matchValue_4 : string(toString(kvp[1])))]));
   }, withExpression, md.GetProperties(false)))));
 }
 function encodeOperationDescriptionElement(op) {
   let h, matchValue_1, r, r_1, matchValue_2, md;
   let basePairs;
+  let acc_6;
   let acc_4;
   let acc_2;
   const acc = ofArray([["cwlVersion", string(op.CWLVersion)], ["class", string("Operation")]]);
-  const pairOpt_1 = map(encodeLabel, op.Label);
+  const pairOpt_1 = map((id) => ["id", string(id)], op.Id);
   const acc_1 = acc;
   acc_2 = pairOpt_1 == null ? acc_1 : append(acc_1, singleton(value(pairOpt_1)));
-  const pairOpt_3 = map(encodeDoc, op.Doc);
+  const pairOpt_3 = map(encodeLabel, op.Label);
   const acc_3 = acc_2;
   acc_4 = pairOpt_3 == null ? acc_3 : append(acc_3, singleton(value(pairOpt_3)));
-  const pairOpt_5 = map(encodeIntent, filter((intent) => intent.length > 0, op.Intent));
+  const pairOpt_5 = map(encodeDoc, op.Doc);
   const acc_5 = acc_4;
-  basePairs = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  acc_6 = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  const pairOpt_7 = map(encodeIntent, filter((intent) => intent.length > 0, op.Intent));
+  const acc_7 = acc_6;
+  basePairs = pairOpt_7 == null ? acc_7 : append(acc_7, singleton(value(pairOpt_7)));
   let withHints;
   const matchValue = op.Hints;
   let matchResult, h_1;
@@ -1232,26 +1246,30 @@ function encodeOperationDescriptionElement(op) {
       withHints = basePairs;
   }
   const withOutputs = append(append((matchValue_1 = op.Requirements, matchValue_1 != null ? (r = value(matchValue_1), r.length > 0) ? (r_1 = value(matchValue_1), append(withHints, singleton(["requirements", YAMLElement_Sequence(ofSeq(map$2(encodeRequirement, r_1)))]))) : withHints : withHints), singleton(["inputs", yMap(toList(map$2(encodeCWLInput, op.Inputs)))])), singleton(["outputs", yMap(toList(map$2(encodeCWLOutput, op.Outputs)))]));
-  return yMap((matchValue_2 = op.Metadata, matchValue_2 == null ? withOutputs : (md = value(matchValue_2), fold((acc_6, kvp) => {
+  return yMap((matchValue_2 = op.Metadata, matchValue_2 == null ? withOutputs : (md = value(matchValue_2), fold((acc_8, kvp) => {
     let matchValue_3;
-    return append(acc_6, singleton([kvp[0], (matchValue_3 = kvp[1], typeof matchValue_3 === "string" ? string(matchValue_3) : typeof matchValue_3 === "boolean" ? yBool(matchValue_3) : typeof matchValue_3 === "number" ? int(matchValue_3) : typeof matchValue_3 === "number" ? float(matchValue_3) : matchValue_3 instanceof YAMLElement ? matchValue_3 : string(toString(kvp[1])))]));
+    return append(acc_8, singleton([kvp[0], (matchValue_3 = kvp[1], typeof matchValue_3 === "string" ? string(matchValue_3) : typeof matchValue_3 === "boolean" ? yBool(matchValue_3) : typeof matchValue_3 === "number" ? int(matchValue_3) : typeof matchValue_3 === "number" ? float(matchValue_3) : matchValue_3 instanceof YAMLElement ? matchValue_3 : string(toString(kvp[1])))]));
   }, withOutputs, md.GetProperties(false)))));
 }
 function encodeWorkflowDescriptionElement(wd) {
   let h, matchValue_1, r, r_1, matchValue_2, md;
   let basePairs;
+  let acc_6;
   let acc_4;
   let acc_2;
   const acc = ofArray([["cwlVersion", string(wd.CWLVersion)], ["class", string("Workflow")]]);
-  const pairOpt_1 = map(encodeLabel, wd.Label);
+  const pairOpt_1 = map((id) => ["id", string(id)], wd.Id);
   const acc_1 = acc;
   acc_2 = pairOpt_1 == null ? acc_1 : append(acc_1, singleton(value(pairOpt_1)));
-  const pairOpt_3 = map(encodeDoc, wd.Doc);
+  const pairOpt_3 = map(encodeLabel, wd.Label);
   const acc_3 = acc_2;
   acc_4 = pairOpt_3 == null ? acc_3 : append(acc_3, singleton(value(pairOpt_3)));
-  const pairOpt_5 = map(encodeIntent, filter((intent) => intent.length > 0, wd.Intent));
+  const pairOpt_5 = map(encodeDoc, wd.Doc);
   const acc_5 = acc_4;
-  basePairs = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  acc_6 = pairOpt_5 == null ? acc_5 : append(acc_5, singleton(value(pairOpt_5)));
+  const pairOpt_7 = map(encodeIntent, filter((intent) => intent.length > 0, wd.Intent));
+  const acc_7 = acc_6;
+  basePairs = pairOpt_7 == null ? acc_7 : append(acc_7, singleton(value(pairOpt_7)));
   let withHints;
   const matchValue = wd.Hints;
   let matchResult, h_1;
@@ -1274,9 +1292,9 @@ function encodeWorkflowDescriptionElement(wd) {
       withHints = basePairs;
   }
   const withOutputs = append(append(append((matchValue_1 = wd.Requirements, matchValue_1 != null ? (r = value(matchValue_1), r.length > 0) ? (r_1 = value(matchValue_1), append(withHints, singleton(["requirements", YAMLElement_Sequence(ofSeq(map$2(encodeRequirement, r_1)))]))) : withHints : withHints), singleton(["inputs", yMap(toList(map$2(encodeCWLInput, wd.Inputs)))])), singleton(["steps", yMap(toList(map$2(encodeWorkflowStep, wd.Steps)))])), singleton(["outputs", yMap(toList(map$2(encodeCWLOutput, wd.Outputs)))]));
-  return yMap((matchValue_2 = wd.Metadata, matchValue_2 == null ? withOutputs : (md = value(matchValue_2), fold((acc_6, kvp) => {
+  return yMap((matchValue_2 = wd.Metadata, matchValue_2 == null ? withOutputs : (md = value(matchValue_2), fold((acc_8, kvp) => {
     let matchValue_3;
-    return append(acc_6, singleton([kvp[0], (matchValue_3 = kvp[1], typeof matchValue_3 === "string" ? string(matchValue_3) : typeof matchValue_3 === "boolean" ? yBool(matchValue_3) : typeof matchValue_3 === "number" ? int(matchValue_3) : typeof matchValue_3 === "number" ? float(matchValue_3) : matchValue_3 instanceof YAMLElement ? matchValue_3 : string(toString(kvp[1])))]));
+    return append(acc_8, singleton([kvp[0], (matchValue_3 = kvp[1], typeof matchValue_3 === "string" ? string(matchValue_3) : typeof matchValue_3 === "boolean" ? yBool(matchValue_3) : typeof matchValue_3 === "number" ? int(matchValue_3) : typeof matchValue_3 === "number" ? float(matchValue_3) : matchValue_3 instanceof YAMLElement ? matchValue_3 : string(toString(kvp[1])))]));
   }, withOutputs, md.GetProperties(false)))));
 }
 function encodeWorkflowStep(ws) {
@@ -1419,16 +1437,16 @@ function renderTopLevelElement(baseKeys, orderedSectionKeys, element) {
   return join("\r\n", merge(empty(), ofArray(split(join("\r\n\r\n", toList(delay(() => append$1(length(basePairs) > 0 ? singleton$1(section(basePairs)) : empty$1(), delay(() => append$1(map$1(section, knownSections), delay(() => length(metadataPairs) > 0 ? singleton$1(section(metadataPairs)) : empty$1()))))))), ["\r\n"], void 0, 0))));
 }
 function encodeToolDescription(td) {
-  return renderTopLevelElement(ofArray(["cwlVersion", "class", "label", "doc", "intent"]), ofArray(["hints", "requirements", "baseCommand", "inputs", "outputs"]), encodeToolDescriptionElement(td));
+  return renderTopLevelElement(ofArray(["cwlVersion", "class", "id", "label", "doc", "intent"]), ofArray(["hints", "requirements", "baseCommand", "inputs", "outputs"]), encodeToolDescriptionElement(td));
 }
 function encodeWorkflowDescription(wd) {
-  return renderTopLevelElement(ofArray(["cwlVersion", "class", "label", "doc", "intent"]), ofArray(["hints", "requirements", "inputs", "steps", "outputs"]), encodeWorkflowDescriptionElement(wd));
+  return renderTopLevelElement(ofArray(["cwlVersion", "class", "id", "label", "doc", "intent"]), ofArray(["hints", "requirements", "inputs", "steps", "outputs"]), encodeWorkflowDescriptionElement(wd));
 }
 function encodeExpressionToolDescription(et) {
-  return renderTopLevelElement(ofArray(["cwlVersion", "class", "label", "doc", "intent"]), ofArray(["hints", "requirements", "inputs", "outputs", "expression"]), encodeExpressionToolDescriptionElement(et));
+  return renderTopLevelElement(ofArray(["cwlVersion", "class", "id", "label", "doc", "intent"]), ofArray(["hints", "requirements", "inputs", "outputs", "expression"]), encodeExpressionToolDescriptionElement(et));
 }
 function encodeOperationDescription(op) {
-  return renderTopLevelElement(ofArray(["cwlVersion", "class", "label", "doc", "intent"]), ofArray(["hints", "requirements", "inputs", "outputs"]), encodeOperationDescriptionElement(op));
+  return renderTopLevelElement(ofArray(["cwlVersion", "class", "id", "label", "doc", "intent"]), ofArray(["hints", "requirements", "inputs", "outputs"]), encodeOperationDescriptionElement(op));
 }
 function encodeProcessingUnit(pu) {
   switch (pu.tag) {

package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts CHANGED Viewed

@@ -1,10 +1,11 @@
-import { CWLOutput } from './Outputs.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
+import { CWLOutput } from './Outputs.js';
 import { HintEntry_$union, Requirement_$union } from './Requirements.js';
 import { CWLInput } from './Inputs.js';
 import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
 export declare class CWLExpressionToolDescription extends DynamicObj {
+    _id: Option<string>;
     _cwlVersion: string;
     _outputs: CWLOutput[];
     _expression: string;
@@ -15,7 +16,9 @@ export declare class CWLExpressionToolDescription extends DynamicObj {
     _metadata: Option<DynamicObj>;
     _label: Option<string>;
     _doc: Option<string>;
-    constructor(outputs: CWLOutput[], expression: string, cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], inputs?: CWLInput[], metadata?: DynamicObj, label?: string, doc?: string);
+    constructor(outputs: CWLOutput[], expression: string, cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], inputs?: CWLInput[], metadata?: DynamicObj, label?: string, doc?: string, id?: string);
+    get Id(): string | undefined;
+    set Id(id: Option<string>);
     get CWLVersion(): string;
     set CWLVersion(version: string);
     get Outputs(): CWLOutput[];
@@ -46,5 +49,5 @@ export declare class CWLExpressionToolDescription extends DynamicObj {
     static getOrCreateIntent(tool: CWLExpressionToolDescription): string[];
 }
 export declare function CWLExpressionToolDescription_$reflection(): TypeInfo;
-export declare function CWLExpressionToolDescription_$ctor_444EA890(outputs: CWLOutput[], expression: string, cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], inputs?: CWLInput[], metadata?: DynamicObj, label?: string, doc?: string): CWLExpressionToolDescription;
+export declare function CWLExpressionToolDescription_$ctor_Z5C219318(outputs: CWLOutput[], expression: string, cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], inputs?: CWLInput[], metadata?: DynamicObj, label?: string, doc?: string, id?: string): CWLExpressionToolDescription;
 //# sourceMappingURL=ExpressionToolDescription.d.ts.map

package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map CHANGED Viewed

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package/dist/ts/ts/CWL/ExpressionToolDescription.js CHANGED Viewed

@@ -3,8 +3,9 @@ import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.
 import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
 class CWLExpressionToolDescription extends DynamicObj {
-  constructor(outputs, expression, cwlVersion, requirements, hints, intent, inputs, metadata, label, doc) {
+  constructor(outputs, expression, cwlVersion, requirements, hints, intent, inputs, metadata, label, doc, id) {
     super();
+    this._id = id;
     this._cwlVersion = defaultArg(cwlVersion, "v1.2");
     this._outputs = outputs;
     this._expression = expression;
@@ -16,6 +17,14 @@ class CWLExpressionToolDescription extends DynamicObj {
     this._label = label;
     this._doc = doc;
   }
+  get Id() {
+    const this$ = this;
+    return unwrap(this$._id);
+  }
+  set Id(id) {
+    const this$ = this;
+    this$._id = id;
+  }
   get CWLVersion() {
     const this$ = this;
     return this$._cwlVersion;
@@ -145,8 +154,8 @@ class CWLExpressionToolDescription extends DynamicObj {
 function CWLExpressionToolDescription_$reflection() {
   return class_type("ARCtrl.CWL.CWLExpressionToolDescription", void 0, CWLExpressionToolDescription, DynamicObj_$reflection());
 }
-function CWLExpressionToolDescription_$ctor_444EA890(outputs, expression, cwlVersion, requirements, hints, intent, inputs, metadata, label, doc) {
-  return new CWLExpressionToolDescription(outputs, expression, cwlVersion, requirements, hints, intent, inputs, metadata, label, doc);
+function CWLExpressionToolDescription_$ctor_Z5C219318(outputs, expression, cwlVersion, requirements, hints, intent, inputs, metadata, label, doc, id) {
+  return new CWLExpressionToolDescription(outputs, expression, cwlVersion, requirements, hints, intent, inputs, metadata, label, doc, id);
 }
-export { CWLExpressionToolDescription, CWLExpressionToolDescription_$ctor_444EA890, CWLExpressionToolDescription_$reflection };
+export { CWLExpressionToolDescription, CWLExpressionToolDescription_$ctor_Z5C219318, CWLExpressionToolDescription_$reflection };

package/dist/ts/ts/CWL/OperationDescription.d.ts CHANGED Viewed

@@ -1,10 +1,11 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
 import { CWLInput } from './Inputs.js';
 import { CWLOutput } from './Outputs.js';
-import { Option } from '@fable-org/fable-library-js/Option.js';
 import { HintEntry_$union, Requirement_$union } from './Requirements.js';
 import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
 export declare class CWLOperationDescription extends DynamicObj {
+    _id: Option<string>;
     _cwlVersion: string;
     _inputs: CWLInput[];
     _outputs: CWLOutput[];
@@ -14,7 +15,9 @@ export declare class CWLOperationDescription extends DynamicObj {
     _metadata: Option<DynamicObj>;
     _label: Option<string>;
     _doc: Option<string>;
-    constructor(inputs: CWLInput[], outputs: CWLOutput[], cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], metadata?: DynamicObj, label?: string, doc?: string);
+    constructor(inputs: CWLInput[], outputs: CWLOutput[], cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], metadata?: DynamicObj, label?: string, doc?: string, id?: string);
+    get Id(): string | undefined;
+    set Id(value: Option<string>);
     get CWLVersion(): string;
     set CWLVersion(value: string);
     get Inputs(): CWLInput[];
@@ -42,5 +45,5 @@ export declare class CWLOperationDescription extends DynamicObj {
     static getOrCreateIntent(operation: CWLOperationDescription): string[];
 }
 export declare function CWLOperationDescription_$reflection(): TypeInfo;
-export declare function CWLOperationDescription_$ctor_58E129C8(inputs: CWLInput[], outputs: CWLOutput[], cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], metadata?: DynamicObj, label?: string, doc?: string): CWLOperationDescription;
+export declare function CWLOperationDescription_$ctor_18FBB4B0(inputs: CWLInput[], outputs: CWLOutput[], cwlVersion?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[], intent?: string[], metadata?: DynamicObj, label?: string, doc?: string, id?: string): CWLOperationDescription;
 //# sourceMappingURL=OperationDescription.d.ts.map

package/dist/ts/ts/CWL/OperationDescription.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/ts/ts/CWL/OperationDescription.js CHANGED Viewed

@@ -3,8 +3,9 @@ import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.
 import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
 class CWLOperationDescription extends DynamicObj {
-  constructor(inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc) {
+  constructor(inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc, id) {
     super();
+    this._id = id;
     this._cwlVersion = defaultArg(cwlVersion, "v1.2");
     this._inputs = inputs;
     this._outputs = outputs;
@@ -15,6 +16,14 @@ class CWLOperationDescription extends DynamicObj {
     this._label = label;
     this._doc = doc;
   }
+  get Id() {
+    const this$ = this;
+    return unwrap(this$._id);
+  }
+  set Id(value) {
+    const this$ = this;
+    this$._id = value;
+  }
   get CWLVersion() {
     const this$ = this;
     return this$._cwlVersion;
@@ -126,8 +135,8 @@ class CWLOperationDescription extends DynamicObj {
 function CWLOperationDescription_$reflection() {
   return class_type("ARCtrl.CWL.CWLOperationDescription", void 0, CWLOperationDescription, DynamicObj_$reflection());
 }
-function CWLOperationDescription_$ctor_58E129C8(inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc) {
-  return new CWLOperationDescription(inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc);
+function CWLOperationDescription_$ctor_18FBB4B0(inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc, id) {
+  return new CWLOperationDescription(inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc, id);
 }
-export { CWLOperationDescription, CWLOperationDescription_$ctor_58E129C8, CWLOperationDescription_$reflection };
+export { CWLOperationDescription, CWLOperationDescription_$ctor_18FBB4B0, CWLOperationDescription_$reflection };

package/dist/ts/ts/CWL/Requirements.d.ts CHANGED Viewed

@@ -6,22 +6,23 @@ import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
 import { int64 } from '@fable-org/fable-library-js/BigInt.js';
 import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
 import { float64, int32 } from '@fable-org/fable-library-js/Int32.js';
-import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.4/YAMLiciousTypes.fs.js';
-export declare class DockerRequirement extends Record implements IEquatable<DockerRequirement>, IComparable<DockerRequirement> {
+import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.7/YAMLiciousTypes.fs.js';
+export declare class DockerRequirement extends Record implements IEquatable<DockerRequirement> {
     readonly DockerPull: Option<string>;
     readonly DockerFile: Option<SchemaSaladString_$union>;
     readonly DockerImageId: Option<string>;
     readonly DockerLoad: Option<string>;
     readonly DockerImport: Option<string>;
     readonly DockerOutputDirectory: Option<string>;
-    constructor(DockerPull: Option<string>, DockerFile: Option<SchemaSaladString_$union>, DockerImageId: Option<string>, DockerLoad: Option<string>, DockerImport: Option<string>, DockerOutputDirectory: Option<string>);
+    readonly DockerRunOptions: Option<string[]>;
+    constructor(DockerPull: Option<string>, DockerFile: Option<SchemaSaladString_$union>, DockerImageId: Option<string>, DockerLoad: Option<string>, DockerImport: Option<string>, DockerOutputDirectory: Option<string>, DockerRunOptions: Option<string[]>);
 }
 export declare function DockerRequirement_$reflection(): TypeInfo;
 /**
  * Create a DockerRequirement from a plain docker file path or explicit schema-salad reference.
  * If both `dockerFileReference` and `dockerFile` are provided, `dockerFileReference` takes precedence.
  */
-export declare function DockerRequirement_create_Z14898805(dockerPull?: string, dockerFile?: string, dockerFileReference?: SchemaSaladString_$union, dockerImageId?: string, dockerLoad?: string, dockerImport?: string, dockerOutputDirectory?: string): DockerRequirement;
+export declare function DockerRequirement_create_Z6E6AA686(dockerPull?: string, dockerFile?: string, dockerFileReference?: SchemaSaladString_$union, dockerImageId?: string, dockerLoad?: string, dockerImport?: string, dockerOutputDirectory?: string, dockerRunOptions?: string[]): DockerRequirement;
 export declare class EnvironmentDef extends Record implements IEquatable<EnvironmentDef>, IComparable<EnvironmentDef> {
     readonly EnvName: string;
     readonly EnvValue: string;
@@ -85,7 +86,7 @@ export declare class ToolTimeLimitValue<Tag extends keyof ToolTimeLimitValue_$ca
 }
 export declare function ToolTimeLimitValue_$reflection(): TypeInfo;
 export declare class ResourceRequirementInstance extends DynamicObj {
-    "init@99": int32;
+    "init@101": int32;
     constructor(coresMin?: Option<any>, coresMax?: Option<any>, ramMin?: Option<any>, ramMax?: Option<any>, tmpdirMin?: Option<any>, tmpdirMax?: Option<any>, outdirMin?: Option<any>, outdirMax?: Option<any>);
 }
 export declare function ResourceRequirementInstance_$reflection(): TypeInfo;

package/dist/ts/ts/CWL/Requirements.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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