@nfdi4plants/arctrl 3.0.0-beta.6 → 3.0.0-beta.8

package/dist/ts/index.d.ts

@@ -17,6 +17,7 @@ import { LDGraphExtensions_PyJsInterop as LDGraphIO, LDNodeExtensions_PyJsIntero
 import { TypeExtensions_Conversion as Conversion } from './ts/Conversion.js';
 export { ARC } from './ts/ARC.js';
 export { ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation } from './ts/Core/ArcTypes.js';
+export { DataMap } from './ts/Core/DataMap.js';
 export { CompositeCell } from './ts/Core/Table/CompositeCell.js';
 export { CompositeHeader, IOType } from './ts/Core/Table/CompositeHeader.js';
 export { CompositeColumn } from './ts/Core/Table/CompositeColumn.js';

package/dist/ts/index.d.ts.map

@@ -1 +1 @@
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package/dist/ts/index.js

@@ -1,5 +1,6 @@
 export { ARC } from './ts/ARC.js';
 export { ArcAssay, ArcInvestigation, ArcRun, ArcStudy, ArcWorkflow } from './ts/Core/ArcTypes.js';
+export { DataMap } from './ts/Core/DataMap.js';
 export { CompositeCell } from './ts/Core/Table/CompositeCell.js';
 export { CompositeHeader, IOType } from './ts/Core/Table/CompositeHeader.js';
 export { CompositeColumn } from './ts/Core/Table/CompositeColumn.js';

package/dist/ts/ts/ARC.d.ts

@@ -1,7 +1,7 @@
 import { FileSystem } from './FileSystem/FileSystem.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { License } from './License.js';
-import { ArcRun, ArcWorkflow, ArcStudy, ArcAssay, ArcInvestigation } from './Core/ArcTypes.js';
+import { ArcWorkflow, ArcRun, ArcStudy, ArcAssay, ArcInvestigation } from './Core/ArcTypes.js';
 import { FSharpResult$2_$union } from '@fable-org/fable-library-js/Result.js';
 import { Contract } from './Contract/Contract.js';
 import { int32 } from '@fable-org/fable-library-js/Int32.js';
@@ -31,8 +31,12 @@ export declare class ARC extends ArcInvestigation {
     SetLicenseFulltext(fulltext: string, path?: string): void;
     static tryLoadAsync(arcPath: string): Promise<FSharpResult$2_$union<ARC, string[]>>;
     GetAssayRemoveContracts(assayIdentifier: string): Contract[];
+    GetRunRemoveContracts(runIdentifier: string): Contract[];
+    GetWorkflowRemoveContracts(workflowIdentifier: string): Contract[];
     TryRemoveAssayAsync(arcPath: string, assayIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
     GetAssayRenameContracts(oldAssayIdentifier: string, newAssayIdentifier: string): Contract[];
+    GetRunRenameContracts(oldRunIdentifier: string, newRunIdentifier: string): Contract[];
+    GetWorkflowRenameContracts(oldRunIdentifier: string, newRunIdentifier: string): Contract[];
     TryRenameAssayAsync(arcPath: string, oldAssayIdentifier: string, newAssayIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
     GetStudyRemoveContracts(studyIdentifier: string): Contract[];
     TryRemoveStudyAsync(arcPath: string, studyIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;

package/dist/ts/ts/ARC.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/ARC.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAoE,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACzI,OAAO,EAAsB,OAAO,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAgC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAE7H,OAAO,EAA2C,qBAAqB,EAAE,MAAM,uCAAuC,CAAC;AACvH,OAAO,EAAgB,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAMhE,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAiB7D,OAAO,EAA8D,OAAO,EAA6B,MAAM,mBAAmB,CAAC;AACnI,OAAO,EAA8C,qBAAqB,EAAkB,MAAM,gCAAgC,CAAC;AAGnI,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAYjE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AACrD,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAC1C,OAAO,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACpD,OAAO,EAAE,uBAAuB,EAAE,MAAM,mCAAmC,CAAC;AAC5E,OAAO,EAAE,SAAS,EAAoB,MAAM,oCAAoC,CAAC;AAOjF,OAAO,EAAE,wBAAwB,EAAE,MAAM,kDAAkD,CAAC;AAE5F,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,qBAAa,GAAI,SAAQ,gBAAgB;IACrC,IAAI,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;IAC1B,GAAG,EAAE,UAAU,CAAC;IAChB,UAAU,EAAE,KAAK,CAAC;gBACN,UAAU,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,iBAAiB,CAAC,EAAE,MAAM,EAAE,wBAAwB,CAAC,EAAE,uBAAuB,EAAE,EAAE,YAAY,CAAC,EAAE,WAAW,EAAE,EAAE,QAAQ,CAAC,EAAE,MAAM,EAAE,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,EAAE,OAAO,CAAC,EAAE,QAAQ,EAAE,EAAE,SAAS,CAAC,EAAE,WAAW,EAAE,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,EAAE,0BAA0B,CAAC,EAAE,MAAM,EAAE,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,EAAE,OAAO,CAAC,EAAE,MAAM,EAAE,EAAE,GAAG,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,OAAO;IAYnc,IAAI,UAAU,IAAI,UAAU,CAG3B;IACD,IAAI,UAAU,CAAC,EAAE,EAAE,UAAU,EAG5B;IACD,IAAI,OAAO,IAAI,OAAO,GAAG,SAAS,CAGjC;IACD,IAAI,OAAO,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,EAGnC;IACD,MAAM,CAAC,oBAAoB,CAAC,GAAG,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,OAAO,GAAG,GAAG;IAG/G,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;IAIpF,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;IAIrF,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,IAAI;IAmBzD,MAAM,CAAC,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,GAAG,EAAE,MAAM,EAAE,CAAC,CAAC;IAkBnF,uBAAuB,CAAC,eAAe,EAAE,MAAM,GAAG,QAAQ,EAAE;IAiB5D,qBAAqB,CAAC,aAAa,EAAE,MAAM,GAAG,QAAQ,EAAE;IAgBxD,0BAA0B,CAAC,kBAAkB,EAAE,MAAM,GAAG,QAAQ,EAAE;IAgBlE,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;IAInH,uBAAuB,CAAC,kBAAkB,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,EAAE;IAgB3F,qBAAqB,CAAC,gBAAgB,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,GAAG,QAAQ,EAAE;IAgBrF,0BAA0B,CAAC,gBAAgB,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,GAAG,QAAQ,EAAE;IAgB1F,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;IAIlJ,uBAAuB,CAAC,eAAe,EAAE,MAAM,GAAG,QAAQ,EAAE;IAS5D,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;IAInH,uBAAuB,CAAC,kBAAkB,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,EAAE;IAgB3F,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;IAIlJ,UAAU,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAc1C,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAc3C,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAczE,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAcxG,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAczE,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAcxG,MAAM,CAAC,SAAS,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC;IAc/C,qBAAqB,IAAI,IAAI;IAiE7B,MAAM,CAAC,aAAa,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,GAAG;IAI9C,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,IAAI;IAKvC,gBAAgB,IAAI,QAAQ,EAAE;IAI9B,mBAAmB,CAAC,SAAS,EAAE,QAAQ,EAAE,GAAG,IAAI;IA0FhD,gBAAgB,IAAI,IAAI;IAKxB,iBAAiB,CAAC,YAAY,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE;IAiErD,kBAAkB,CAAC,YAAY,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE;IAyLtD,mBAAmB,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,iBAAiB,CAAC,EAAE,MAAM,EAAE,gBAAgB,CAAC,EAAE,OAAO,EAAE,oBAAoB,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE;IAKxI,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,QAAQ;IAGjI,IAAI,IAAI,GAAG;IA4DX,oBAAoB,CAAC,YAAY,CAAC,EAAE,OAAO,GAAG,qBAAqB;IAiDnE,oBAAoB,CAAC,YAAY,CAAC,EAAE,OAAO,GAAG,qBAAqB;IAgBnE,MAAM,KAAK,gBAAgB,IAAI,SAAS,CAAC,MAAM,EAAE,QAAQ,CAAC,CAIzD;IACD,MAAM,CAAC,+BAA+B,CAAC,CAAC,EAAE,MAAM,GAAG,GAAG;IAmBtD,MAAM,CAAC,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,GAAG;IAqB5C,mBAAmB,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAM3C,MAAM,CAAC,mBAAmB,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,GAAG,KAAK,MAAM,CAAC;IAGnE,uBAAuB,IAAI,QAAQ;IAKnC,wCAAwC,CAAC,GAAG,EAAE,wBAAwB,GAAG,QAAQ;IAYjF,yCAAyC,CAAC,GAAG,EAAE,wBAAwB,GAAG,QAAQ;IAYlF,uCAAuC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package/dist/ts/ts/ARC.js

@@ -1,7 +1,7 @@
 import { FileSystem } from './FileSystem/FileSystem.js';
 import { unwrap, defaultArg, value, map as map$2, bind, defaultArgWith } from '../node_modules/@fable-org/fable-library-js/Option.js';
 import { License } from './License.js';
-import { ArcInvestigation, ArcWorkflow__get_Identifier, ArcWorkflow__get_DataMap, ArcWorkflow__set_DataMap_51F1E59E, ArcWorkflow__set_StaticHash_Z524259A4, ArcWorkflow__GetLightHashCode, ArcWorkflow__get_StaticHash, ArcWorkflow__Copy_6FCE9E49, ArcInvestigation_$reflection } from './Core/ArcTypes.js';
+import { ArcInvestigation, ArcInvestigation_$reflection } from './Core/ArcTypes.js';
 import { fullFillContractBatchAsync } from './ContractIO/ContractIO.js';
 import { FSharpResult$2_Error, FSharpResult$2_Ok } from '../node_modules/@fable-org/fable-library-js/Result.js';
 import { Contract } from './Contract/Contract.js';
@@ -10,10 +10,12 @@ import { promise } from './fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js';
 import { getAllFilePathsAsync } from './ContractIO/FileSystemHelper.js';
 import { toArray, contains, delay, append, singleton, map, iterate, tryFind, find, empty, collect, toList } from '../node_modules/@fable-org/fable-library-js/Seq.js';
 import { defaultOf, stringHash, comparePrimitives, curry2, safeHash, getEnumerator, disposeSafe, equals } from '../node_modules/@fable-org/fable-library-js/Util.js';
-import { getAssayFolderPath, getStudyFolderPath } from './FileSystem/Path.js';
+import { getAssayFolderPath, getRunFolderPath, getWorkflowFolderPath, getStudyFolderPath } from './FileSystem/Path.js';
 import { ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F } from './Contract/ArcAssay.js';
 import { ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F } from './Contract/ArcInvestigation.js';
 import { ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F } from './Contract/ArcStudy.js';
+import { ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F } from './Contract/ArcRun.js';
+import { ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F } from './Contract/ArcWorkflow.js';
 import { map as map$1, choose, fold, concat, contains as contains$2, append as append$1, tryPick, equalsWith, item } from '../node_modules/@fable-org/fable-library-js/Array.js';
 import { replace, join, toFail, printf, toText } from '../node_modules/@fable-org/fable-library-js/String.js';
 import { createMissingIdentifier, Study_fileNameFromIdentifier, Study_datamapFileNameFromIdentifier, Assay_fileNameFromIdentifier, Assay_datamapFileNameFromIdentifier, Workflow_fileNameFromIdentifier, Workflow_datamapFileNameFromIdentifier, Run_fileNameFromIdentifier, Run_datamapFileNameFromIdentifier } from './Core/Helper/Identifier.js';
@@ -33,8 +35,6 @@ import { ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E } from '.
 import { ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8 } from './Spreadsheet/ArcRun.js';
 import { Dictionary_tryGet } from './fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js';
 import { ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5, ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static } from './Contract/Datamap.js';
-import { ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F } from './Contract/ArcWorkflow.js';
-import { ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F } from './Contract/ArcRun.js';
 import { Init_createInitContract_6DFDD678, gitignoreContract, gitattributesContract, Init_createAddRemoteContract_Z721C83C5, Clone_createCloneContract_5000466F } from './Contract/Git.js';
 import { ofSeq as ofSeq$1 } from '../node_modules/@fable-org/fable-library-js/Map.js';
 import { fromString } from './fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
@@ -138,6 +138,38 @@ class ARC extends ArcInvestigation {
     this$.SetFilePaths(filteredPaths);
     return toArray(delay(() => append(singleton(ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(assay)), delay(() => append(singleton(ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$)), delay(() => map(ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, studies)))))));
   }
+  GetRunRemoveContracts(runIdentifier) {
+    const this$ = this;
+    if (!contains(runIdentifier, this$.RunIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    })) {
+      throw new Error("ARC does not contain run with given name");
+    }
+    const run = this$.GetRun(runIdentifier);
+    this$.DeleteRun(runIdentifier);
+    const paths = this$.FileSystem.Tree.ToFilePaths();
+    const runFolderPath = getRunFolderPath(runIdentifier);
+    const filteredPaths = paths.filter((p) => !p.startsWith(runFolderPath));
+    this$.SetFilePaths(filteredPaths);
+    return [ARCtrl_ArcRun__ArcRun_ToDeleteContract(run), ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$)];
+  }
+  GetWorkflowRemoveContracts(workflowIdentifier) {
+    const this$ = this;
+    if (!contains(workflowIdentifier, this$.WorkflowIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    })) {
+      throw new Error("ARC does not contain workflow with given name");
+    }
+    const workflow = this$.GetWorkflow(workflowIdentifier);
+    this$.DeleteWorkflow(workflowIdentifier);
+    const paths = this$.FileSystem.Tree.ToFilePaths();
+    const workflowFolderPath = getWorkflowFolderPath(workflowIdentifier);
+    const filteredPaths = paths.filter((p) => !p.startsWith(workflowFolderPath));
+    this$.SetFilePaths(filteredPaths);
+    return [ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(workflow), ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$)];
+  }
   TryRemoveAssayAsync(arcPath, assayIdentifier) {
     const this$ = this;
     return fullFillContractBatchAsync(arcPath, this$.GetAssayRemoveContracts(assayIdentifier));
@@ -158,6 +190,38 @@ class ARC extends ArcInvestigation {
     this$.SetFilePaths(renamedPaths);
     return toArray(delay(() => append(singleton(Contract.createRename(oldAssayFolderPath, newAssayFolderPath)), delay(() => this$.GetUpdateContracts()))));
   }
+  GetRunRenameContracts(oldRunIdentifier, newRunIdentifier) {
+    const this$ = this;
+    if (!contains(oldRunIdentifier, this$.RunIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    })) {
+      throw new Error("ARC does not contain run with given name");
+    }
+    this$.RenameRun(oldRunIdentifier, newRunIdentifier);
+    const paths = this$.FileSystem.Tree.ToFilePaths();
+    const oldPath = getRunFolderPath(oldRunIdentifier);
+    const newPath = getRunFolderPath(newRunIdentifier);
+    const renamedPaths = map$1((p) => replace(p, oldPath, newPath), paths);
+    this$.SetFilePaths(renamedPaths);
+    return toArray(delay(() => append(singleton(Contract.createRename(oldPath, newPath)), delay(() => this$.GetUpdateContracts()))));
+  }
+  GetWorkflowRenameContracts(oldRunIdentifier, newRunIdentifier) {
+    const this$ = this;
+    if (!contains(oldRunIdentifier, this$.WorkflowIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    })) {
+      throw new Error("ARC does not contain run with given name");
+    }
+    this$.RenameWorkflow(oldRunIdentifier, newRunIdentifier);
+    const paths = this$.FileSystem.Tree.ToFilePaths();
+    const oldPath = getWorkflowFolderPath(oldRunIdentifier);
+    const newPath = getWorkflowFolderPath(newRunIdentifier);
+    const renamedPaths = map$1((p) => replace(p, oldPath, newPath), paths);
+    this$.SetFilePaths(renamedPaths);
+    return toArray(delay(() => append(singleton(Contract.createRename(oldPath, newPath)), delay(() => this$.GetUpdateContracts()))));
+  }
   TryRenameAssayAsync(arcPath, oldAssayIdentifier, newAssayIdentifier) {
     const this$ = this;
     return fullFillContractBatchAsync(arcPath, this$.GetAssayRenameContracts(oldAssayIdentifier, newAssayIdentifier));
@@ -433,12 +497,12 @@ class ARC extends ArcInvestigation {
       assay_1.Tables = updatedTables.Tables;
     });
     workflows.forEach((workflow) => {
-      const datamap_2 = ARCAux_getWorkflowDataMapFromContracts(ArcWorkflow__get_Identifier(workflow), contracts);
-      if (ArcWorkflow__get_DataMap(workflow) == null) {
-        ArcWorkflow__set_DataMap_51F1E59E(workflow, datamap_2);
+      const datamap_2 = ARCAux_getWorkflowDataMapFromContracts(workflow.Identifier, contracts);
+      if (workflow.DataMap == null) {
+        workflow.DataMap = datamap_2;
       }
       this$.AddWorkflow(workflow);
-      ArcWorkflow__set_StaticHash_Z524259A4(workflow, ArcWorkflow__GetLightHashCode(workflow));
+      workflow.StaticHash = workflow.GetLightHashCode() | 0;
     });
     runs.forEach((run) => {
       const datamap_3 = ARCAux_getRunDataMapFromContracts(run.Identifier, contracts);
@@ -489,12 +553,12 @@ class ARC extends ArcInvestigation {
       }
     }, this$.Assays);
     iterate((w) => {
-      ArcWorkflow__set_StaticHash_Z524259A4(w, ArcWorkflow__GetLightHashCode(w));
-      addToDict(filemap, Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(w)), ["ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(w)]);
-      if (ArcWorkflow__get_DataMap(w) != null) {
-        const dm_2 = value(ArcWorkflow__get_DataMap(w));
+      w.StaticHash = w.GetLightHashCode() | 0;
+      addToDict(filemap, Workflow_fileNameFromIdentifier(w.Identifier), ["ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(w)]);
+      if (w.DataMap != null) {
+        const dm_2 = value(w.DataMap);
         DataMap__set_StaticHash_Z524259A4(dm_2, safeHash(dm_2));
-        addToDict(filemap, Workflow_datamapFileNameFromIdentifier(ArcWorkflow__get_Identifier(w)), ["ISA_Datamap", toFsWorkbook(dm_2)]);
+        addToDict(filemap, Workflow_datamapFileNameFromIdentifier(w.Identifier), ["ISA_Datamap", toFsWorkbook(dm_2)]);
       }
     }, this$.Workflows);
     iterate((r) => {
@@ -608,11 +672,11 @@ class ARC extends ArcInvestigation {
               }
             }));
           }, this$.Assays), delay(() => append(collect((w) => {
-            const hash_3 = ArcWorkflow__GetLightHashCode(w) | 0;
-            return append(ArcWorkflow__get_StaticHash(w) === 0 ? ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(w, true) : ArcWorkflow__get_StaticHash(w) !== hash_3 ? singleton(ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(w)) : empty(), delay(() => {
+            const hash_3 = w.GetLightHashCode() | 0;
+            return append(w.StaticHash === 0 ? ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(w, true) : w.StaticHash !== hash_3 ? singleton(ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(w)) : empty(), delay(() => {
               let dm_9;
-              ArcWorkflow__set_StaticHash_Z524259A4(w, hash_3);
-              const matchValue_2 = ArcWorkflow__get_DataMap(w);
+              w.StaticHash = hash_3 | 0;
+              const matchValue_2 = w.DataMap;
               let matchResult_2, dm_10, dm_11;
               if (matchValue_2 != null) {
                 if (DataMap__get_StaticHash(value(matchValue_2)) === 0) {
@@ -629,12 +693,12 @@ class ARC extends ArcInvestigation {
               }
               switch (matchResult_2) {
                 case 0:
-                  return append(singleton(ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5(dm_10, ArcWorkflow__get_Identifier(w))), delay(() => {
+                  return append(singleton(ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5(dm_10, w.Identifier)), delay(() => {
                     DataMap__set_StaticHash_Z524259A4(dm_10, safeHash(dm_10));
                     return empty();
                   }));
                 case 1:
-                  return append(singleton(ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(dm_11, ArcWorkflow__get_Identifier(w))), delay(() => {
+                  return append(singleton(ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(dm_11, w.Identifier)), delay(() => {
                     DataMap__set_StaticHash_Z524259A4(dm_11, safeHash(dm_11));
                     return empty();
                   }));
@@ -734,7 +798,8 @@ class ARC extends ArcInvestigation {
     try {
       while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
         const workflow = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
-        void nextWorkflows.push(ArcWorkflow__Copy_6FCE9E49(workflow));
+        const copy_2 = workflow.Copy();
+        void nextWorkflows.push(copy_2);
       }
     } finally {
       disposeSafe(enumerator_2);
@@ -966,7 +1031,7 @@ function ARCAux_updateFSByARC(isa, license, fs) {
   const studies = map$1((s) => FileSystemTree.createStudyFolder(s.Identifier, s.DataMap != null), toArray(isa.Studies));
   studiesFolder = FileSystemTree.createStudiesFolder(studies);
   let workflowsFolder;
-  const workflows = map$1((w) => FileSystemTree.createWorkflowFolder(ArcWorkflow__get_Identifier(w), ArcWorkflow__get_DataMap(w) != null), toArray(isa.Workflows));
+  const workflows = map$1((w) => FileSystemTree.createWorkflowFolder(w.Identifier, w.DataMap != null), toArray(isa.Workflows));
   workflowsFolder = FileSystemTree.createWorkflowsFolder(workflows);
   let runsFolder;
   const runs = map$1((r) => FileSystemTree.createRunFolder(r.Identifier, r.DataMap != null), toArray(isa.Runs));

package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -1,6 +1,6 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
-import { ArcWorkflow } from '../Core/ArcTypes.js';
 import { Contract } from './Contract.js';
+import { ArcWorkflow } from '../Core/ArcTypes.js';
 export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,WAAW,EAA+B,MAAM,qBAAqB,CAAC;AAC/E,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAMzC,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}
+{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGlD,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}

package/dist/ts/ts/Contract/ArcWorkflow.js

@@ -3,7 +3,6 @@ import { combineMany, getWorkflowFolderPath } from '../FileSystem/Path.js';
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
 import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
 import { Workflow_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
-import { ArcWorkflow__get_Identifier } from '../Core/ArcTypes.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcWorkflow.js';
 import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
@@ -35,19 +34,19 @@ function $007CWorkflowPath$007C_$007C(input) {
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const withFolder = defaultArg(WithFolder, false);
-  const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
+  const path = Workflow_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
   return toArray(delay(() => {
     let folderFS;
-    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(ArcWorkflow__get_Identifier(this$))]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(this$.Identifier)]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
   }));
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$) {
-  const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
+  const path = Workflow_fileNameFromIdentifier(this$.Identifier);
   return Contract.createUpdate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$) {
-  const path = getWorkflowFolderPath(ArcWorkflow__get_Identifier(this$));
+  const path = getWorkflowFolderPath(this$.Identifier);
   return Contract.createDelete(path);
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E(workflow) {

package/dist/ts/ts/Core/ArcTypes.d.ts

@@ -225,9 +225,62 @@ export declare class ArcWorkflow {
     "comments@1166": Comment$[];
     staticHash: int32;
     constructor(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]);
+    get Identifier(): string;
+    set Identifier(i: string);
+    get Investigation(): ArcInvestigation | undefined;
+    set Investigation(a: Option<ArcInvestigation>);
+    get Title(): string | undefined;
+    set Title(t: Option<string>);
+    get Description(): string | undefined;
+    set Description(d: Option<string>);
+    get SubWorkflowIdentifiers(): string[];
+    set SubWorkflowIdentifiers(s: string[]);
+    get WorkflowType(): OntologyAnnotation | undefined;
+    set WorkflowType(w: Option<OntologyAnnotation>);
+    get URI(): string | undefined;
+    set URI(u: Option<string>);
+    get Version(): string | undefined;
+    set Version(v: Option<string>);
+    get Parameters(): ProtocolParameter[];
+    set Parameters(p: ProtocolParameter[]);
+    get Components(): Component[];
+    set Components(c: Component[]);
+    get DataMap(): DataMap | undefined;
+    set DataMap(dm: Option<DataMap>);
+    get Contacts(): Person[];
+    set Contacts(c: Person[]);
+    get Comments(): Comment$[];
+    set Comments(c: Comment$[]);
+    get StaticHash(): int32;
+    set StaticHash(s: int32);
+    static init(identifier: string): ArcWorkflow;
+    static create(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]): ArcWorkflow;
+    static make(identifier: string, title: Option<string>, description: Option<string>, workflowType: Option<OntologyAnnotation>, uri: Option<string>, version: Option<string>, subWorkflowIdentifiers: string[], parameters: ProtocolParameter[], components: Component[], datamap: Option<DataMap>, contacts: Person[], comments: Comment$[]): ArcWorkflow;
+    static get FileName(): string;
+    get SubWorkflowIdentifiersCount(): int32;
+    get SubWorkflowCount(): int32;
+    get SubWorkflows(): ArcWorkflow[];
+    get VacantSubWorkflowIdentifiers(): string[];
+    AddSubWorkflow(subWorkflow: ArcWorkflow): void;
+    static addSubWorkflow(subWorkflow: ArcWorkflow): ((arg0: ArcWorkflow) => ArcWorkflow);
+    InitSubWorkflow(subWorkflowIdentifier: string): ArcWorkflow;
+    static initSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => [ArcWorkflow, ArcWorkflow]);
+    RegisterSubWorkflow(subWorkflowIdentifier: string): void;
+    static registerSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
+    DeregisterSubWorkflow(subWorkflowIdentifier: string): void;
+    static deregisterSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
+    GetRegisteredSubWorkflow(subWorkflowIdentifier: string): ArcWorkflow;
+    static getRegisteredSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
+    static getRegisteredSubWorkflows(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
+    GetRegisteredSubWorkflowsOrIdentifier(): ArcWorkflow[];
+    static getRegisteredSubWorkflowsOrIdentifier(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
+    Copy(copyInvestigationRef?: boolean): ArcWorkflow;
+    StructurallyEquals(other: ArcWorkflow): boolean;
+    ReferenceEquals(other: ArcStudy): boolean;
     toString(): string;
     Equals(other: any): boolean;
     GetHashCode(): int32;
+    GetLightHashCode(): int32;
 }
 export declare function ArcWorkflow_$reflection(): TypeInfo;
 export declare function ArcWorkflow_$ctor_Z3BB02240(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]): ArcWorkflow;
@@ -395,6 +448,10 @@ export declare class ArcInvestigation {
     static removeAssay(assayIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
     RenameAssay(oldIdentifier: string, newIdentifier: string): void;
     static renameAssay(oldIdentifier: string, newIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
+    RenameRun(oldIdentifier: string, newIdentifier: string): void;
+    static renameRun(oldIdentifier: string, newIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
+    RenameWorkflow(oldIdentifier: string, newIdentifier: string): void;
+    static renameWorkflow(oldIdentifier: string, newIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
     SetAssayAt(index: int32, assay: ArcAssay): void;
     static setAssayAt(index: int32, assay: ArcAssay): ((arg0: ArcInvestigation) => ArcInvestigation);
     SetAssay(assayIdentifier: string, assay: ArcAssay): void;
@@ -525,96 +582,4 @@ export declare function ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier<$a, $b
 export declare function ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier<$a, $b>(studyIdentifer: $a, investigationIdentifier: $b): string;
 export declare function ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier<$a, $b>(workflowIdentifier: $a, investigationIdentifier: $b): string;
 export declare function ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier<$a, $b>(runIdentifier: $a, investigationIdentifier: $b): string;
-/**
- * Must be unique in one study
- */
-export declare function ArcWorkflow__get_Identifier(this$: ArcWorkflow): string;
-/**
- * Must be unique in one study
- */
-export declare function ArcWorkflow__set_Identifier_Z721C83C5(this$: ArcWorkflow, i: string): void;
-export declare function ArcWorkflow__get_Investigation(this$: ArcWorkflow): Option<ArcInvestigation>;
-export declare function ArcWorkflow__set_Investigation_Z1E102E3E(this$: ArcWorkflow, a: Option<ArcInvestigation>): void;
-export declare function ArcWorkflow__get_Title(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_Title_6DFDD678(this$: ArcWorkflow, t: Option<string>): void;
-export declare function ArcWorkflow__get_Description(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_Description_6DFDD678(this$: ArcWorkflow, d: Option<string>): void;
-export declare function ArcWorkflow__get_SubWorkflowIdentifiers(this$: ArcWorkflow): string[];
-export declare function ArcWorkflow__set_SubWorkflowIdentifiers_70A00D82(this$: ArcWorkflow, s: string[]): void;
-export declare function ArcWorkflow__get_WorkflowType(this$: ArcWorkflow): Option<OntologyAnnotation>;
-export declare function ArcWorkflow__set_WorkflowType_279AAFF2(this$: ArcWorkflow, w: Option<OntologyAnnotation>): void;
-export declare function ArcWorkflow__get_URI(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_URI_6DFDD678(this$: ArcWorkflow, u: Option<string>): void;
-export declare function ArcWorkflow__get_Version(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_Version_6DFDD678(this$: ArcWorkflow, v: Option<string>): void;
-export declare function ArcWorkflow__get_Parameters(this$: ArcWorkflow): ProtocolParameter[];
-export declare function ArcWorkflow__set_Parameters_10749ED2(this$: ArcWorkflow, p: ProtocolParameter[]): void;
-export declare function ArcWorkflow__get_Components(this$: ArcWorkflow): Component[];
-export declare function ArcWorkflow__set_Components_Z3A507DDE(this$: ArcWorkflow, c: Component[]): void;
-export declare function ArcWorkflow__get_DataMap(this$: ArcWorkflow): Option<DataMap>;
-export declare function ArcWorkflow__set_DataMap_51F1E59E(this$: ArcWorkflow, dm: Option<DataMap>): void;
-export declare function ArcWorkflow__get_Contacts(this$: ArcWorkflow): Person[];
-export declare function ArcWorkflow__set_Contacts_Z7E0D1CA3(this$: ArcWorkflow, c: Person[]): void;
-export declare function ArcWorkflow__get_Comments(this$: ArcWorkflow): Comment$[];
-export declare function ArcWorkflow__set_Comments_149C14BB(this$: ArcWorkflow, c: Comment$[]): void;
-export declare function ArcWorkflow__get_StaticHash(this$: ArcWorkflow): int32;
-export declare function ArcWorkflow__set_StaticHash_Z524259A4(this$: ArcWorkflow, s: int32): void;
-export declare function ArcWorkflow_init_Z721C83C5(identifier: string): ArcWorkflow;
-export declare function ArcWorkflow_create_Z3BB02240(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]): ArcWorkflow;
-export declare function ArcWorkflow_make(identifier: string, title: Option<string>, description: Option<string>, workflowType: Option<OntologyAnnotation>, uri: Option<string>, version: Option<string>, subWorkflowIdentifiers: string[], parameters: ProtocolParameter[], components: Component[], datamap: Option<DataMap>, contacts: Person[], comments: Comment$[]): ArcWorkflow;
-export declare function ArcWorkflow_get_FileName(): string;
-/**
- * Returns the count of registered subWorkflow *identifiers*. This is not necessarily the same as the count of registered subWorkflows, as not all identifiers correspond to an existing subWorkflow.
- */
-export declare function ArcWorkflow__get_SubWorkflowIdentifiersCount(this$: ArcWorkflow): int32;
-/**
- * Returns the count of registered subWorkflows. This is not necessarily the same as the count of registered subWorkflow *identifiers*, as not all identifiers correspond to an existing subWorkflow.
- */
-export declare function ArcWorkflow__get_SubWorkflowCount(this$: ArcWorkflow): int32;
-/**
- * Returns all subWorkflows registered in this workflow, that correspond to an existing subWorkflow object in the associated investigation.
- */
-export declare function ArcWorkflow__get_SubWorkflows(this$: ArcWorkflow): ArcWorkflow[];
-/**
- * Returns all registered subWorkflow identifiers that do not correspond to an existing subWorkflow object in the associated investigation.
- */
-export declare function ArcWorkflow__get_VacantSubWorkflowIdentifiers(this$: ArcWorkflow): string[];
-/**
- * Add subWorkflow to investigation and register it to workflow.
- */
-export declare function ArcWorkflow__AddSubWorkflow_Z1C75CB0E(this$: ArcWorkflow, subWorkflow: ArcWorkflow): void;
-export declare function ArcWorkflow_addSubWorkflow_Z1C75CB0E(subWorkflow: ArcWorkflow): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow__InitSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): ArcWorkflow;
-export declare function ArcWorkflow_initSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => [ArcWorkflow, ArcWorkflow]);
-export declare function ArcWorkflow__RegisterSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): void;
-export declare function ArcWorkflow_registerSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow__DeregisterSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): void;
-export declare function ArcWorkflow_deregisterSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow__GetRegisteredSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): ArcWorkflow;
-export declare function ArcWorkflow_getRegisteredSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow_getRegisteredSubWorkflows(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
-/**
- * Returns ArcSubWorkflows registered in workflow, or if no parent exists, initializies new ArcSubWorkflow from identifier.
- */
-export declare function ArcWorkflow__GetRegisteredSubWorkflowsOrIdentifier(this$: ArcWorkflow): ArcWorkflow[];
-/**
- * Returns ArcSubWorkflows registered in workflow, or if no parent exists, initializies new ArcSubWorkflow from identifier.
- */
-export declare function ArcWorkflow_getRegisteredSubWorkflowsOrIdentifier(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
-/**
- * Copies ArcStudy object without the pointer to the parent ArcInvestigation
- *
- * This copy does only contain the identifiers of the registered ArcAssays and not the actual objects.
- *
- * In order to copy the ArcAssays as well, use the Copy() method of the ArcInvestigation.
- */
-export declare function ArcWorkflow__Copy_6FCE9E49(this$: ArcWorkflow, copyInvestigationRef: Option<boolean>): ArcWorkflow;
-export declare function ArcWorkflow__StructurallyEquals_Z1C75CB0E(this$: ArcWorkflow, other: ArcWorkflow): boolean;
-/**
- * Use this function to check if this ArcWorkflow and the input ArcWorkflow refer to the same object.
- *
- * If true, updating one will update the other due to mutability.
- */
-export declare function ArcWorkflow__ReferenceEquals_1680536E(this$: ArcWorkflow, other: ArcStudy): boolean;
-export declare function ArcWorkflow__GetLightHashCode(this$: ArcWorkflow): int32;
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