@nfdi4plants/arctrl 3.0.0-beta.13 → 3.0.0-beta.14

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Files changed (60) hide show
  1. package/dist/ts/index.d.ts +2 -1
  2. package/dist/ts/index.d.ts.map +1 -1
  3. package/dist/ts/index.js +2 -1
  4. package/dist/ts/ts/ARC.d.ts +5 -5
  5. package/dist/ts/ts/ARC.js +52 -52
  6. package/dist/ts/ts/Contract/Datamap.d.ts +25 -25
  7. package/dist/ts/ts/Contract/Datamap.js +34 -34
  8. package/dist/ts/ts/Conversion/Assay.js +6 -6
  9. package/dist/ts/ts/Conversion/ColumnIndex.d.ts +1 -0
  10. package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map +1 -1
  11. package/dist/ts/ts/Conversion/ColumnIndex.js +24 -5
  12. package/dist/ts/ts/Conversion/Datamap.d.ts +3 -3
  13. package/dist/ts/ts/Conversion/Datamap.js +4 -4
  14. package/dist/ts/ts/Conversion/Run.js +6 -6
  15. package/dist/ts/ts/Conversion/Study.js +6 -6
  16. package/dist/ts/ts/Conversion/Workflow.js +6 -6
  17. package/dist/ts/ts/Core/ArcTypes.d.ts +29 -29
  18. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  19. package/dist/ts/ts/Core/ArcTypes.js +46 -46
  20. package/dist/ts/ts/Core/{DataMap.d.ts → Datamap.d.ts} +24 -24
  21. package/dist/ts/ts/Core/{DataMap.d.ts.map → Datamap.d.ts.map} +1 -1
  22. package/dist/ts/ts/Core/{DataMap.js → Datamap.js} +36 -36
  23. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +4 -4
  24. package/dist/ts/ts/FileSystem/FileSystemTree.js +16 -16
  25. package/dist/ts/ts/Json/Assay.js +5 -5
  26. package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.d.ts.map +1 -1
  27. package/dist/ts/ts/Json/{DataMap/DataMap.d.ts → Datamap/Datamap.d.ts} +6 -6
  28. package/dist/ts/ts/Json/{DataMap/DataMap.d.ts.map → Datamap/Datamap.d.ts.map} +1 -1
  29. package/dist/ts/ts/Json/{DataMap/DataMap.js → Datamap/Datamap.js} +2 -2
  30. package/dist/ts/ts/Json/ROCrate/LDNode.js +2 -2
  31. package/dist/ts/ts/Json/Run.js +5 -5
  32. package/dist/ts/ts/Json/Study.js +5 -5
  33. package/dist/ts/ts/Json/Workflow.js +5 -5
  34. package/dist/ts/ts/Json.d.ts +3 -3
  35. package/dist/ts/ts/Json.js +3 -3
  36. package/dist/ts/ts/JsonIO/Datamap.d.ts +4 -4
  37. package/dist/ts/ts/JsonIO/Datamap.js +6 -6
  38. package/dist/ts/ts/ROCrate/ROCrateContext.js +1 -1
  39. package/dist/ts/ts/Spreadsheet/ArcAssay.js +3 -3
  40. package/dist/ts/ts/Spreadsheet/ArcRun.js +2 -2
  41. package/dist/ts/ts/Spreadsheet/ArcStudy.js +3 -3
  42. package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +2 -2
  43. package/dist/ts/ts/Spreadsheet/Datamap.d.ts +8 -0
  44. package/dist/ts/ts/Spreadsheet/{DataMap.d.ts.map → Datamap.d.ts.map} +1 -1
  45. package/dist/ts/ts/Spreadsheet/{DataMap.js → Datamap.js} +9 -9
  46. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts → DatamapTable/DatamapColumn.d.ts} +1 -1
  47. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts.map → DatamapTable/DatamapColumn.d.ts.map} +1 -1
  48. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.js → DatamapTable/DatamapColumn.js} +1 -1
  49. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts → DatamapTable/DatamapHeader.d.ts} +1 -1
  50. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts.map → DatamapTable/DatamapHeader.d.ts.map} +1 -1
  51. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts → DatamapTable/DatamapTable.d.ts} +5 -5
  52. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts.map → DatamapTable/DatamapTable.d.ts.map} +1 -1
  53. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.js → DatamapTable/DatamapTable.js} +6 -6
  54. package/dist/ts/ts/Xlsx.d.ts +5 -5
  55. package/dist/ts/ts/Xlsx.js +1 -1
  56. package/package.json +1 -1
  57. package/dist/ts/ts/Spreadsheet/DataMap.d.ts +0 -8
  58. /package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.d.ts +0 -0
  59. /package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.js +0 -0
  60. /package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.js → DatamapTable/DatamapHeader.js} +0 -0
@@ -8,18 +8,18 @@ import { DataContext__get_Explication, DataContext__set_Explication_279AAFF2, Da
8
8
  import { hash, boxHashSeq } from './Helper/HashCodes.js';
9
9
  import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
10
10
 
11
- const DataMapAux_dataHeader = CompositeHeader_Input(IOType_Data());
12
- const DataMapAux_explication = new OntologyAnnotation("Clarification", "NCIT", "http://purl.obolibrary.org/obo/NCIT_C94778");
13
- const DataMapAux_explicationHeader = CompositeHeader_Parameter(DataMapAux_explication);
14
- const DataMapAux_unit = new OntologyAnnotation("Unit", "UO", "http://purl.obolibrary.org/obo/UO_0000000");
15
- const DataMapAux_unitHeader = CompositeHeader_Parameter(DataMapAux_unit);
16
- const DataMapAux_objectType = new OntologyAnnotation("Data Type", "NCIT", "http://purl.obolibrary.org/obo/NCIT_C42645");
17
- const DataMapAux_objectTypeHeader = CompositeHeader_Parameter(DataMapAux_objectType);
18
- const DataMapAux_labelHeader = CompositeHeader_FreeText("Label");
19
- const DataMapAux_descriptionHeader = CompositeHeader_FreeText("Description");
20
- const DataMapAux_generatedByHeader = CompositeHeader_FreeText("Generated By");
21
- const DataMapAux_allowedHeaders = ofArray([DataMapAux_dataHeader, DataMapAux_explicationHeader, DataMapAux_unitHeader, DataMapAux_objectTypeHeader, DataMapAux_descriptionHeader, DataMapAux_generatedByHeader]);
22
- function DataMapAux_getOntologyColumn(f, dataContexts) {
11
+ const DatamapAux_dataHeader = CompositeHeader_Input(IOType_Data());
12
+ const DatamapAux_explication = new OntologyAnnotation("Clarification", "NCIT", "http://purl.obolibrary.org/obo/NCIT_C94778");
13
+ const DatamapAux_explicationHeader = CompositeHeader_Parameter(DatamapAux_explication);
14
+ const DatamapAux_unit = new OntologyAnnotation("Unit", "UO", "http://purl.obolibrary.org/obo/UO_0000000");
15
+ const DatamapAux_unitHeader = CompositeHeader_Parameter(DatamapAux_unit);
16
+ const DatamapAux_objectType = new OntologyAnnotation("Data Type", "NCIT", "http://purl.obolibrary.org/obo/NCIT_C42645");
17
+ const DatamapAux_objectTypeHeader = CompositeHeader_Parameter(DatamapAux_objectType);
18
+ const DatamapAux_labelHeader = CompositeHeader_FreeText("Label");
19
+ const DatamapAux_descriptionHeader = CompositeHeader_FreeText("Description");
20
+ const DatamapAux_generatedByHeader = CompositeHeader_FreeText("Generated By");
21
+ const DatamapAux_allowedHeaders = ofArray([DatamapAux_dataHeader, DatamapAux_explicationHeader, DatamapAux_unitHeader, DatamapAux_objectTypeHeader, DatamapAux_descriptionHeader, DatamapAux_generatedByHeader]);
22
+ function DatamapAux_getOntologyColumn(f, dataContexts) {
23
23
  const collection = map((dc) => {
24
24
  const matchValue = f(dc);
25
25
  if (matchValue == null) {
@@ -30,7 +30,7 @@ function DataMapAux_getOntologyColumn(f, dataContexts) {
30
30
  }, dataContexts);
31
31
  return Array.from(collection);
32
32
  }
33
- function DataMapAux_getStringColumn(f, dataContexts) {
33
+ function DatamapAux_getStringColumn(f, dataContexts) {
34
34
  const collection = map((dc) => {
35
35
  const matchValue = f(dc);
36
36
  if (matchValue == null) {
@@ -41,7 +41,7 @@ function DataMapAux_getStringColumn(f, dataContexts) {
41
41
  }, dataContexts);
42
42
  return Array.from(collection);
43
43
  }
44
- function DataMapAux_setOntologyColumn(f, column, dataContexts) {
44
+ function DatamapAux_setOntologyColumn(f, column, dataContexts) {
45
45
  iterateIndexed((i, cell) => {
46
46
  if (cell.tag === /* Term */
47
47
  0) {
@@ -50,7 +50,7 @@ function DataMapAux_setOntologyColumn(f, column, dataContexts) {
50
50
  }
51
51
  }, column);
52
52
  }
53
- function DataMapAux_setStringColumn(f, column, dataContexts) {
53
+ function DatamapAux_setStringColumn(f, column, dataContexts) {
54
54
  iterateIndexed((i, cell) => {
55
55
  if (cell.tag === /* FreeText */
56
56
  1) {
@@ -59,7 +59,7 @@ function DataMapAux_setStringColumn(f, column, dataContexts) {
59
59
  }
60
60
  }, column);
61
61
  }
62
- function DataMapAux_SanityChecks_rowIndexInBoundaries(row, dataContexts) {
62
+ function DatamapAux_SanityChecks_rowIndexInBoundaries(row, dataContexts) {
63
63
  if (row < 0) {
64
64
  throw new Error("Row index must be greater or equal to 0.");
65
65
  }
@@ -67,12 +67,12 @@ function DataMapAux_SanityChecks_rowIndexInBoundaries(row, dataContexts) {
67
67
  throw new Error("Row index must be less than the number of rows.");
68
68
  }
69
69
  }
70
- function DataMapAux_SanityChecks_lengthOfNewColumn(newColumn, dataContexts) {
70
+ function DatamapAux_SanityChecks_lengthOfNewColumn(newColumn, dataContexts) {
71
71
  if (newColumn.length !== dataContexts.length) {
72
72
  throw new Error("Length of new column does not match length of data contexts.");
73
73
  }
74
74
  }
75
- class DataMap {
75
+ class Datamap {
76
76
  constructor(dataContexts) {
77
77
  this.staticHash = 0;
78
78
  this["dataContexts@108"] = dataContexts;
@@ -90,61 +90,61 @@ class DataMap {
90
90
  return this$["dataContexts@108"];
91
91
  }
92
92
  static init() {
93
- return new DataMap([]);
93
+ return new Datamap([]);
94
94
  }
95
95
  GetExplicationColumn() {
96
96
  const this$ = this;
97
- return DataMapAux_getOntologyColumn(DataContext__get_Explication, this$["dataContexts@108"]);
97
+ return DatamapAux_getOntologyColumn(DataContext__get_Explication, this$["dataContexts@108"]);
98
98
  }
99
99
  SetExplicationColumn(cells) {
100
100
  const this$ = this;
101
- DataMapAux_setOntologyColumn((dc, oa) => {
101
+ DatamapAux_setOntologyColumn((dc, oa) => {
102
102
  DataContext__set_Explication_279AAFF2(dc, oa);
103
103
  }, cells, this$["dataContexts@108"]);
104
104
  }
105
105
  GetUnitColumn() {
106
106
  const this$ = this;
107
- return DataMapAux_getOntologyColumn(DataContext__get_Unit, this$["dataContexts@108"]);
107
+ return DatamapAux_getOntologyColumn(DataContext__get_Unit, this$["dataContexts@108"]);
108
108
  }
109
109
  SetUnitColumn(cells) {
110
110
  const this$ = this;
111
- DataMapAux_setOntologyColumn((dc, oa) => {
111
+ DatamapAux_setOntologyColumn((dc, oa) => {
112
112
  DataContext__set_Unit_279AAFF2(dc, oa);
113
113
  }, cells, this$["dataContexts@108"]);
114
114
  }
115
115
  GetObjectTypeColumn() {
116
116
  const this$ = this;
117
- return DataMapAux_getOntologyColumn(DataContext__get_ObjectType, this$["dataContexts@108"]);
117
+ return DatamapAux_getOntologyColumn(DataContext__get_ObjectType, this$["dataContexts@108"]);
118
118
  }
119
119
  SetDataTypeColumn(cells) {
120
120
  const this$ = this;
121
- DataMapAux_setOntologyColumn((dc, oa) => {
121
+ DatamapAux_setOntologyColumn((dc, oa) => {
122
122
  DataContext__set_ObjectType_279AAFF2(dc, oa);
123
123
  }, cells, this$["dataContexts@108"]);
124
124
  }
125
125
  GetLabelColumn() {
126
126
  const this$ = this;
127
- return DataMapAux_getStringColumn((dc) => dc.Name, this$["dataContexts@108"]);
127
+ return DatamapAux_getStringColumn((dc) => dc.Name, this$["dataContexts@108"]);
128
128
  }
129
129
  SetLabelColumn(cells) {
130
130
  const this$ = this;
131
- DataMapAux_setStringColumn((dc, s) => {
131
+ DatamapAux_setStringColumn((dc, s) => {
132
132
  dc.Name = s;
133
133
  }, cells, this$["dataContexts@108"]);
134
134
  }
135
135
  GetDescriptionColumn() {
136
136
  const this$ = this;
137
- return DataMapAux_getStringColumn(DataContext__get_Description, this$["dataContexts@108"]);
137
+ return DatamapAux_getStringColumn(DataContext__get_Description, this$["dataContexts@108"]);
138
138
  }
139
139
  SetDescriptionColumn(cells) {
140
140
  const this$ = this;
141
- DataMapAux_setStringColumn((dc, s) => {
141
+ DatamapAux_setStringColumn((dc, s) => {
142
142
  DataContext__set_Description_6DFDD678(dc, s);
143
143
  }, cells, this$["dataContexts@108"]);
144
144
  }
145
145
  GetDataContext(row, SkipValidation) {
146
146
  const this$ = this;
147
- DataMapAux_SanityChecks_rowIndexInBoundaries(row, this$["dataContexts@108"]);
147
+ DatamapAux_SanityChecks_rowIndexInBoundaries(row, this$["dataContexts@108"]);
148
148
  return this$["dataContexts@108"][row];
149
149
  }
150
150
  static getDataContext(row, SkipValidation) {
@@ -153,7 +153,7 @@ class DataMap {
153
153
  Copy() {
154
154
  let collection;
155
155
  const this$ = this;
156
- return new DataMap((collection = map(DataContext__Copy, this$["dataContexts@108"]), Array.from(collection)));
156
+ return new Datamap((collection = map(DataContext__Copy, this$["dataContexts@108"]), Array.from(collection)));
157
157
  }
158
158
  Equals(obj) {
159
159
  const this$ = this;
@@ -167,11 +167,11 @@ class DataMap {
167
167
  return "isa.datamap.xlsx";
168
168
  }
169
169
  }
170
- function DataMap_$reflection() {
171
- return class_type("ARCtrl.DataMap", void 0, DataMap);
170
+ function Datamap_$reflection() {
171
+ return class_type("ARCtrl.Datamap", void 0, Datamap);
172
172
  }
173
- function DataMap_$ctor_4E3220A7(dataContexts) {
174
- return new DataMap(dataContexts);
173
+ function Datamap_$ctor_4E3220A7(dataContexts) {
174
+ return new Datamap(dataContexts);
175
175
  }
176
176
 
177
- export { DataMap, DataMapAux_SanityChecks_lengthOfNewColumn, DataMapAux_SanityChecks_rowIndexInBoundaries, DataMapAux_allowedHeaders, DataMapAux_dataHeader, DataMapAux_descriptionHeader, DataMapAux_explication, DataMapAux_explicationHeader, DataMapAux_generatedByHeader, DataMapAux_getOntologyColumn, DataMapAux_getStringColumn, DataMapAux_labelHeader, DataMapAux_objectType, DataMapAux_objectTypeHeader, DataMapAux_setOntologyColumn, DataMapAux_setStringColumn, DataMapAux_unit, DataMapAux_unitHeader, DataMap_$ctor_4E3220A7, DataMap_$reflection };
177
+ export { Datamap, DatamapAux_SanityChecks_lengthOfNewColumn, DatamapAux_SanityChecks_rowIndexInBoundaries, DatamapAux_allowedHeaders, DatamapAux_dataHeader, DatamapAux_descriptionHeader, DatamapAux_explication, DatamapAux_explicationHeader, DatamapAux_generatedByHeader, DatamapAux_getOntologyColumn, DatamapAux_getStringColumn, DatamapAux_labelHeader, DatamapAux_objectType, DatamapAux_objectTypeHeader, DatamapAux_setOntologyColumn, DatamapAux_setStringColumn, DatamapAux_unit, DatamapAux_unitHeader, Datamap_$ctor_4E3220A7, Datamap_$reflection };
@@ -41,10 +41,10 @@ export declare class FileSystemTree<Tag extends keyof FileSystemTree_$cases> ext
41
41
  static createGitKeepFile(): FileSystemTree_$union;
42
42
  static createReadmeFile(): FileSystemTree_$union;
43
43
  static createEmptyFolder(name: string): FileSystemTree_$union;
44
- static createAssayFolder(assayName: string, hasDataMap?: boolean): FileSystemTree_$union;
45
- static createStudyFolder(studyName: string, hasDataMap?: boolean): FileSystemTree_$union;
46
- static createWorkflowFolder(workflowName: string, hasCWL?: boolean, hasDataMap?: boolean): FileSystemTree_$union;
47
- static createRunFolder(runName: string, hasCWL?: boolean, hasYML?: boolean, hasDataMap?: boolean): FileSystemTree_$union;
44
+ static createAssayFolder(assayName: string, hasDatamap?: boolean): FileSystemTree_$union;
45
+ static createStudyFolder(studyName: string, hasDatamap?: boolean): FileSystemTree_$union;
46
+ static createWorkflowFolder(workflowName: string, hasCWL?: boolean, hasDatamap?: boolean): FileSystemTree_$union;
47
+ static createRunFolder(runName: string, hasCWL?: boolean, hasYML?: boolean, hasDatamap?: boolean): FileSystemTree_$union;
48
48
  static createInvestigationFile(): FileSystemTree_$union;
49
49
  static createLicenseFile(): FileSystemTree_$union;
50
50
  static createAssaysFolder(assays: FileSystemTree_$union[]): FileSystemTree_$union;
@@ -272,46 +272,46 @@ class FileSystemTree extends Union {
272
272
  static createEmptyFolder(name) {
273
273
  return FileSystemTree.createFolder(name, [FileSystemTree.createGitKeepFile()]);
274
274
  }
275
- static createAssayFolder(assayName, hasDataMap) {
276
- const hasDataMap_1 = defaultArg(hasDataMap, false);
275
+ static createAssayFolder(assayName, hasDatamap) {
276
+ const hasDatamap_1 = defaultArg(hasDatamap, false);
277
277
  const dataset = FileSystemTree.createEmptyFolder("dataset");
278
278
  const protocols = FileSystemTree.createEmptyFolder("protocols");
279
279
  const readme = FileSystemTree.createReadmeFile();
280
280
  const assayFile = FileSystemTree.createFile("isa.assay.xlsx");
281
- if (hasDataMap_1) {
282
- const dataMapFile = FileSystemTree.createFile("isa.datamap.xlsx");
283
- return FileSystemTree.createFolder(assayName, [dataset, protocols, assayFile, readme, dataMapFile]);
281
+ if (hasDatamap_1) {
282
+ const datamapFile = FileSystemTree.createFile("isa.datamap.xlsx");
283
+ return FileSystemTree.createFolder(assayName, [dataset, protocols, assayFile, readme, datamapFile]);
284
284
  } else {
285
285
  return FileSystemTree.createFolder(assayName, [dataset, protocols, assayFile, readme]);
286
286
  }
287
287
  }
288
- static createStudyFolder(studyName, hasDataMap) {
289
- const hasDataMap_1 = defaultArg(hasDataMap, false);
288
+ static createStudyFolder(studyName, hasDatamap) {
289
+ const hasDatamap_1 = defaultArg(hasDatamap, false);
290
290
  const resources = FileSystemTree.createEmptyFolder("resources");
291
291
  const protocols = FileSystemTree.createEmptyFolder("protocols");
292
292
  const readme = FileSystemTree.createReadmeFile();
293
293
  const studyFile = FileSystemTree.createFile("isa.study.xlsx");
294
- if (hasDataMap_1) {
295
- const dataMapFile = FileSystemTree.createFile("isa.datamap.xlsx");
296
- return FileSystemTree.createFolder(studyName, [resources, protocols, studyFile, readme, dataMapFile]);
294
+ if (hasDatamap_1) {
295
+ const datamapFile = FileSystemTree.createFile("isa.datamap.xlsx");
296
+ return FileSystemTree.createFolder(studyName, [resources, protocols, studyFile, readme, datamapFile]);
297
297
  } else {
298
298
  return FileSystemTree.createFolder(studyName, [resources, protocols, studyFile, readme]);
299
299
  }
300
300
  }
301
- static createWorkflowFolder(workflowName, hasCWL, hasDataMap) {
302
- const hasDataMap_1 = defaultArg(hasDataMap, false);
301
+ static createWorkflowFolder(workflowName, hasCWL, hasDatamap) {
302
+ const hasDatamap_1 = defaultArg(hasDatamap, false);
303
303
  const hasCWL_1 = defaultArg(hasCWL, false);
304
304
  const readme = FileSystemTree.createReadmeFile();
305
305
  const workflowFile = FileSystemTree.createFile("isa.workflow.xlsx");
306
- return FileSystemTree.createFolder(workflowName, toArray(delay(() => append(singleton(workflowFile), delay(() => append(singleton(readme), delay(() => append(hasCWL_1 ? singleton(FileSystemTree.createFile("workflow.cwl")) : empty$1(), delay(() => hasDataMap_1 ? singleton(FileSystemTree.createFile("isa.datamap.xlsx")) : empty$1())))))))));
306
+ return FileSystemTree.createFolder(workflowName, toArray(delay(() => append(singleton(workflowFile), delay(() => append(singleton(readme), delay(() => append(hasCWL_1 ? singleton(FileSystemTree.createFile("workflow.cwl")) : empty$1(), delay(() => hasDatamap_1 ? singleton(FileSystemTree.createFile("isa.datamap.xlsx")) : empty$1())))))))));
307
307
  }
308
- static createRunFolder(runName, hasCWL, hasYML, hasDataMap) {
309
- const hasDataMap_1 = defaultArg(hasDataMap, false);
308
+ static createRunFolder(runName, hasCWL, hasYML, hasDatamap) {
309
+ const hasDatamap_1 = defaultArg(hasDatamap, false);
310
310
  const hasCWL_1 = defaultArg(hasCWL, false);
311
311
  const hasYML_1 = defaultArg(hasYML, false);
312
312
  const readme = FileSystemTree.createReadmeFile();
313
313
  const runFile = FileSystemTree.createFile("isa.run.xlsx");
314
- return FileSystemTree.createFolder(runName, toArray(delay(() => append(singleton(runFile), delay(() => append(singleton(readme), delay(() => append(hasCWL_1 ? singleton(FileSystemTree.createFile("run.cwl")) : empty$1(), delay(() => append(hasYML_1 ? singleton(FileSystemTree.createFile("run.yml")) : empty$1(), delay(() => hasDataMap_1 ? singleton(FileSystemTree.createFile("isa.datamap.xlsx")) : empty$1())))))))))));
314
+ return FileSystemTree.createFolder(runName, toArray(delay(() => append(singleton(runFile), delay(() => append(singleton(readme), delay(() => append(hasCWL_1 ? singleton(FileSystemTree.createFile("run.cwl")) : empty$1(), delay(() => append(hasYML_1 ? singleton(FileSystemTree.createFile("run.yml")) : empty$1(), delay(() => hasDatamap_1 ? singleton(FileSystemTree.createFile("isa.datamap.xlsx")) : empty$1())))))))))));
315
315
  }
316
316
  static createInvestigationFile() {
317
317
  return FileSystemTree.createFile("isa.investigation.xlsx");
@@ -2,7 +2,7 @@ import { choose, ofArray, singleton, empty } from '../../node_modules/@fable-org
2
2
  import { map, unwrap, defaultArg, value, bind } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { tryInclude, tryIncludeSeq, tryIncludeList } from './Encode.js';
4
4
  import { OntologyAnnotation_encoder, OntologyAnnotation_decoder, OntologyAnnotation_ROCrate_encoderPropertyValue, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_ROCrate_decoderPropertyValue, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ISAJson_decoder } from './OntologyAnnotation.js';
5
- import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$2, decoderCompressed as decoderCompressed$2 } from './DataMap/DataMap.js';
5
+ import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$2, decoderCompressed as decoderCompressed$2 } from './Datamap/Datamap.js';
6
6
  import { encoder as encoder$2, decoder as decoder$1, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './Table/ArcTable.js';
7
7
  import { encoder as encoder$3, decoder as decoder$3, ROCrate_encoder as ROCrate_encoder$1, ROCrate_decoder as ROCrate_decoder$2 } from './Person.js';
8
8
  import { encoder as encoder$4, decoder as decoder$4, ROCrate_encoder as ROCrate_encoder$4, ROCrate_decoder as ROCrate_decoder$3, ISAJson_encoder as ISAJson_encoder$3, ISAJson_decoder as ISAJson_decoder$2 } from './Comment.js';
@@ -38,7 +38,7 @@ function encoder(assay) {
38
38
  Encode(helpers_2) {
39
39
  return helpers_2.encodeString(value_3);
40
40
  }
41
- }), assay.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, assay.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, assay.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, assay.TechnologyPlatform), tryInclude("DataMap", encoder$1, assay.DataMap), tryIncludeSeq("Tables", encoder$2, assay.Tables), tryIncludeSeq("Performers", encoder$3, assay.Performers), tryIncludeSeq("Comments", encoder$4, assay.Comments)]));
41
+ }), assay.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, assay.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, assay.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, assay.TechnologyPlatform), tryInclude("Datamap", encoder$1, assay.Datamap), tryIncludeSeq("Tables", encoder$2, assay.Tables), tryIncludeSeq("Performers", encoder$3, assay.Performers), tryIncludeSeq("Comments", encoder$4, assay.Comments)]));
42
42
  return {
43
43
  Encode(helpers_3) {
44
44
  const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_3)], values_1);
@@ -48,7 +48,7 @@ function encoder(assay) {
48
48
  }
49
49
  const decoder = object((get$) => {
50
50
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
51
- return ArcAssay.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(decoder$1), objectArg_6 = get$.Optional, objectArg_6.Field("Tables", arg_13))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("DataMap", decoder$2))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Performers", arg_17))), unwrap((arg_19 = resizeArray(decoder$4), objectArg_9 = get$.Optional, objectArg_9.Field("Comments", arg_19))));
51
+ return ArcAssay.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(decoder$1), objectArg_6 = get$.Optional, objectArg_6.Field("Tables", arg_13))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("Datamap", decoder$2))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Performers", arg_17))), unwrap((arg_19 = resizeArray(decoder$4), objectArg_9 = get$.Optional, objectArg_9.Field("Comments", arg_19))));
52
52
  });
53
53
  function encoderCompressed(stringTable, oaTable, cellTable, assay) {
54
54
  let value;
@@ -64,7 +64,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, assay) {
64
64
  Encode(helpers_2) {
65
65
  return helpers_2.encodeString(value_3);
66
66
  }
67
- }), assay.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, assay.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, assay.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, assay.TechnologyPlatform), tryIncludeSeq("Tables", (table) => encoderCompressed$1(stringTable, oaTable, cellTable, table), assay.Tables), tryInclude("DataMap", (dm) => encoderCompressed$2(stringTable, oaTable, cellTable, dm), assay.DataMap), tryIncludeSeq("Performers", encoder$3, assay.Performers), tryIncludeSeq("Comments", encoder$4, assay.Comments)]));
67
+ }), assay.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, assay.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, assay.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, assay.TechnologyPlatform), tryIncludeSeq("Tables", (table) => encoderCompressed$1(stringTable, oaTable, cellTable, table), assay.Tables), tryInclude("Datamap", (dm) => encoderCompressed$2(stringTable, oaTable, cellTable, dm), assay.Datamap), tryIncludeSeq("Performers", encoder$3, assay.Performers), tryIncludeSeq("Comments", encoder$4, assay.Comments)]));
68
68
  return {
69
69
  Encode(helpers_3) {
70
70
  const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_3)], values_1);
@@ -75,7 +75,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, assay) {
75
75
  function decoderCompressed(stringTable, oaTable, cellTable) {
76
76
  return object((get$) => {
77
77
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
78
- return ArcAssay.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_6 = get$.Optional, objectArg_6.Field("Tables", arg_13))), unwrap((arg_15 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_7 = get$.Optional, objectArg_7.Field("DataMap", arg_15))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Performers", arg_17))), unwrap((arg_19 = resizeArray(decoder$4), objectArg_9 = get$.Optional, objectArg_9.Field("Comments", arg_19))));
78
+ return ArcAssay.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_6 = get$.Optional, objectArg_6.Field("Tables", arg_13))), unwrap((arg_15 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_7 = get$.Optional, objectArg_7.Field("Datamap", arg_15))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Performers", arg_17))), unwrap((arg_19 = resizeArray(decoder$4), objectArg_9 = get$.Optional, objectArg_9.Field("Comments", arg_19))));
79
79
  });
80
80
  }
81
81
  function ROCrate_genID(a) {
@@ -1 +1 @@
1
- {"version":3,"file":"DataContext.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/DataMap/DataContext.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,uDAAuD,CAAC;AAKjH,OAAO,EAA+B,WAAW,EAAwK,MAAM,2BAA2B,CAAC;AAK3P,wBAAgB,OAAO,CAAC,EAAE,EAAE,WAAW,GAAG,UAAU,CAoBnD;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,WAAW,CAMzC,CAAC"}
1
+ {"version":3,"file":"DataContext.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/Datamap/DataContext.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,uDAAuD,CAAC;AAKjH,OAAO,EAA+B,WAAW,EAAwK,MAAM,2BAA2B,CAAC;AAK3P,wBAAgB,OAAO,CAAC,EAAE,EAAE,WAAW,GAAG,UAAU,CAoBnD;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,WAAW,CAMzC,CAAC"}
@@ -1,11 +1,11 @@
1
1
  import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
2
- import { DataMap } from '../../Core/DataMap.js';
2
+ import { Datamap } from '../../Core/Datamap.js';
3
3
  import { IMap } from '@fable-org/fable-library-js/Util.js';
4
4
  import { int32 } from '@fable-org/fable-library-js/Int32.js';
5
5
  import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
6
6
  import { CompositeCell_$union } from '../../Core/Table/CompositeCell.js';
7
- export declare function encoder(dm: DataMap): IEncodable;
8
- export declare const decoder: Decoder$1<DataMap>;
9
- export declare function encoderCompressed(stringTable: IMap<string, int32>, oaTable: IMap<OntologyAnnotation, int32>, cellTable: IMap<CompositeCell_$union, int32>, dm: DataMap): IEncodable;
10
- export declare function decoderCompressed(stringTable: string[], oaTable: OntologyAnnotation[], cellTable: CompositeCell_$union[]): Decoder$1<DataMap>;
11
- //# sourceMappingURL=DataMap.d.ts.map
7
+ export declare function encoder(dm: Datamap): IEncodable;
8
+ export declare const decoder: Decoder$1<Datamap>;
9
+ export declare function encoderCompressed(stringTable: IMap<string, int32>, oaTable: IMap<OntologyAnnotation, int32>, cellTable: IMap<CompositeCell_$union, int32>, dm: Datamap): IEncodable;
10
+ export declare function decoderCompressed(stringTable: string[], oaTable: OntologyAnnotation[], cellTable: CompositeCell_$union[]): Decoder$1<Datamap>;
11
+ //# sourceMappingURL=Datamap.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"DataMap.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/DataMap/DataMap.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,uDAAuD,CAAC;AACjH,OAAO,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAEhD,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtE,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAEzE,wBAAgB,OAAO,CAAC,EAAE,EAAE,OAAO,GAAG,UAAU,CAQ/C;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,OAAO,CAGrC,CAAC;AAEH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,kBAAkB,EAAE,KAAK,CAAC,EAAE,SAAS,EAAE,IAAI,CAAC,oBAAoB,EAAE,KAAK,CAAC,EAAE,EAAE,EAAE,OAAO,GAAG,UAAU,CAEnL;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,OAAO,EAAE,kBAAkB,EAAE,EAAE,SAAS,EAAE,oBAAoB,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,CAE7I"}
1
+ {"version":3,"file":"Datamap.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/Datamap/Datamap.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,uDAAuD,CAAC;AACjH,OAAO,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAEhD,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtE,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAEzE,wBAAgB,OAAO,CAAC,EAAE,EAAE,OAAO,GAAG,UAAU,CAQ/C;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,OAAO,CAGrC,CAAC;AAEH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,kBAAkB,EAAE,KAAK,CAAC,EAAE,SAAS,EAAE,IAAI,CAAC,oBAAoB,EAAE,KAAK,CAAC,EAAE,EAAE,EAAE,OAAO,GAAG,UAAU,CAEnL;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,OAAO,EAAE,kBAAkB,EAAE,EAAE,SAAS,EAAE,oBAAoB,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,CAE7I"}
@@ -1,7 +1,7 @@
1
1
  import { seq } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
2
2
  import { map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
3
3
  import { encoder as encoder$1, decoder as decoder$1 } from './DataContext.js';
4
- import { DataMap } from '../../Core/DataMap.js';
4
+ import { Datamap } from '../../Core/Datamap.js';
5
5
  import { object, resizeArray } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
6
6
 
7
7
  function encoder(dm) {
@@ -15,7 +15,7 @@ function encoder(dm) {
15
15
  }
16
16
  const decoder = object((get$) => {
17
17
  let arg_1, objectArg;
18
- return new DataMap((arg_1 = resizeArray(decoder$1), objectArg = get$.Required, objectArg.Field("dataContexts", arg_1)));
18
+ return new Datamap((arg_1 = resizeArray(decoder$1), objectArg = get$.Required, objectArg.Field("dataContexts", arg_1)));
19
19
  });
20
20
  function encoderCompressed(stringTable, oaTable, cellTable, dm) {
21
21
  return encoder(dm);
@@ -8,7 +8,7 @@ import { list } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
8
8
  import { toList, delay, map, enumerateFromFunctions, append, singleton, empty, collect } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
9
9
  import { encoder as encoder$3, decoder as decoder$1 } from './LDContext.js';
10
10
  import { value, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
11
- import { Getters$2_$ctor_Z4BE6C149, string, Getters$2__get_Errors, map as map$1, oneOf, int, decimal } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
11
+ import { Getters$2_$ctor_Z4BE6C149, string, Getters$2__get_Errors, map as map$1, oneOf, int, decimal, bool } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
12
12
  import { Decode_resizeArrayOrSingleton, Helpers_prependPath } from '../Decode.js';
13
13
  import { isEmpty, length, head, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
14
14
  import { FSharpResult$2_Error, FSharpResult$2_Ok } from '../../../node_modules/@fable-org/fable-library-js/Result.js';
@@ -179,7 +179,7 @@ function getDecoder(expectObject) {
179
179
  if (expectObject_1) {
180
180
  return map$1((value_4) => value_4, decodeObject);
181
181
  } else {
182
- return oneOf(ofArray([map$1((value_5) => value_5, decoder$2), map$1((value_6) => value_6, decodeObject), map$1((value_7) => value_7, decoder$3), map$1((value_8) => value_8, resizeArray), map$1((value_9) => value_9, string), map$1((value_10) => value_10, int), map$1((value_11) => value_11, decimal)]));
182
+ return oneOf(ofArray([map$1((value_5) => value_5, decoder$2), map$1((value_6) => value_6, decodeObject), map$1((value_7) => value_7, decoder$3), map$1((value_8) => value_8, resizeArray), map$1((value_9) => value_9, string), map$1((value_10) => value_10, int), map$1((value_11) => value_11, decimal), map$1((value_12) => value_12, bool)]));
183
183
  }
184
184
  };
185
185
  return decode(expectObject);
@@ -2,7 +2,7 @@ import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/
2
2
  import { map, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { tryInclude, tryIncludeSeq } from './Encode.js';
4
4
  import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from './OntologyAnnotation.js';
5
- import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$2 } from './DataMap/DataMap.js';
5
+ import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$2 } from './Datamap/Datamap.js';
6
6
  import { encoder as encoder$2, decoder as decoder$1, encoderCompressed as encoderCompressed$2, decoderCompressed as decoderCompressed$1 } from './Table/ArcTable.js';
7
7
  import { encoder as encoder$3, decoder as decoder$3 } from './Person.js';
8
8
  import { encoder as encoder$4, decoder as decoder$4 } from './Comment.js';
@@ -24,7 +24,7 @@ function encoder(run) {
24
24
  Encode(helpers_2) {
25
25
  return helpers_2.encodeString(value_3);
26
26
  }
27
- }), run.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, run.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, run.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, run.TechnologyPlatform), tryInclude("DataMap", encoder$1, run.DataMap), tryIncludeSeq("WorkflowIdentifiers", (value_5) => ({
27
+ }), run.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, run.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, run.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, run.TechnologyPlatform), tryInclude("Datamap", encoder$1, run.Datamap), tryIncludeSeq("WorkflowIdentifiers", (value_5) => ({
28
28
  Encode(helpers_3) {
29
29
  return helpers_3.encodeString(value_5);
30
30
  }
@@ -38,7 +38,7 @@ function encoder(run) {
38
38
  }
39
39
  const decoder = object((get$) => {
40
40
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
41
- return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("DataMap", decoder$2))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
41
+ return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("Datamap", decoder$2))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
42
42
  });
43
43
  function encoderCompressed(stringTable, oaTable, cellTable, run) {
44
44
  let value;
@@ -54,7 +54,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, run) {
54
54
  Encode(helpers_2) {
55
55
  return helpers_2.encodeString(value_3);
56
56
  }
57
- }), run.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, run.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, run.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, run.TechnologyPlatform), tryInclude("DataMap", (dm) => encoderCompressed$1(stringTable, oaTable, cellTable, dm), run.DataMap), tryIncludeSeq("WorkflowIdentifiers", (value_5) => ({
57
+ }), run.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, run.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, run.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, run.TechnologyPlatform), tryInclude("Datamap", (dm) => encoderCompressed$1(stringTable, oaTable, cellTable, dm), run.Datamap), tryIncludeSeq("WorkflowIdentifiers", (value_5) => ({
58
58
  Encode(helpers_3) {
59
59
  return helpers_3.encodeString(value_5);
60
60
  }
@@ -69,7 +69,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, run) {
69
69
  function decoderCompressed(stringTable, oaTable, cellTable) {
70
70
  return object((get$) => {
71
71
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
72
- return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((arg_17 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_8 = get$.Optional, objectArg_8.Field("DataMap", arg_17))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
72
+ return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((arg_17 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_8 = get$.Optional, objectArg_8.Field("Datamap", arg_17))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
73
73
  });
74
74
  }
75
75
 
@@ -7,7 +7,7 @@ import { encoder as encoder$1, decoder as decoder$1, ROCrate_encoder as ROCrate_
7
7
  import { encoder as encoder$2, decoder as decoder$2, ROCrate_encoder as ROCrate_encoder$2, ROCrate_decoder as ROCrate_decoder$4, ISAJson_encoder as ISAJson_encoder$3, ISAJson_decoder as ISAJson_decoder$3 } from './Person.js';
8
8
  import { OntologyAnnotation_encoder, OntologyAnnotation_decoder, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ISAJson_decoder } from './OntologyAnnotation.js';
9
9
  import { encoder as encoder$3, decoder as decoder$3, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './Table/ArcTable.js';
10
- import { encoder as encoder$4, decoder as decoder$4, encoderCompressed as encoderCompressed$2, decoderCompressed as decoderCompressed$2 } from './DataMap/DataMap.js';
10
+ import { encoder as encoder$4, decoder as decoder$4, encoderCompressed as encoderCompressed$2, decoderCompressed as decoderCompressed$2 } from './Datamap/Datamap.js';
11
11
  import { encoder as encoder$5, decoder as decoder$5, ROCrate_encoder as ROCrate_encoder$6, ROCrate_decoder as ROCrate_decoder$5, ISAJson_encoder as ISAJson_encoder$6, ISAJson_decoder as ISAJson_decoder$5 } from './Comment.js';
12
12
  import { map as map$1, isEmpty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
13
13
  import { object, string, resizeArray, list as list$1 } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
@@ -57,7 +57,7 @@ function encoder(study) {
57
57
  Encode(helpers_4) {
58
58
  return helpers_4.encodeString(value_7);
59
59
  }
60
- }), study.PublicReleaseDate), tryIncludeSeq("Publications", encoder$1, study.Publications), tryIncludeSeq("Contacts", encoder$2, study.Contacts), tryIncludeSeq("StudyDesignDescriptors", OntologyAnnotation_encoder, study.StudyDesignDescriptors), tryIncludeSeq("Tables", encoder$3, study.Tables), tryInclude("DataMap", encoder$4, study.DataMap), tryIncludeSeq("RegisteredAssayIdentifiers", (value_9) => ({
60
+ }), study.PublicReleaseDate), tryIncludeSeq("Publications", encoder$1, study.Publications), tryIncludeSeq("Contacts", encoder$2, study.Contacts), tryIncludeSeq("StudyDesignDescriptors", OntologyAnnotation_encoder, study.StudyDesignDescriptors), tryIncludeSeq("Tables", encoder$3, study.Tables), tryInclude("Datamap", encoder$4, study.Datamap), tryIncludeSeq("RegisteredAssayIdentifiers", (value_9) => ({
61
61
  Encode(helpers_5) {
62
62
  return helpers_5.encodeString(value_9);
63
63
  }
@@ -71,7 +71,7 @@ function encoder(study) {
71
71
  }
72
72
  const decoder = object((get$) => {
73
73
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
74
- return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", decoder$4))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
74
+ return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("Datamap", decoder$4))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
75
75
  });
76
76
  function encoderCompressed(stringTable, oaTable, cellTable, study) {
77
77
  let value;
@@ -95,7 +95,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, study) {
95
95
  Encode(helpers_4) {
96
96
  return helpers_4.encodeString(value_7);
97
97
  }
98
- }), study.PublicReleaseDate), tryIncludeSeq("Publications", encoder$1, study.Publications), tryIncludeSeq("Contacts", encoder$2, study.Contacts), tryIncludeSeq("StudyDesignDescriptors", OntologyAnnotation_encoder, study.StudyDesignDescriptors), tryIncludeSeq("Tables", (table) => encoderCompressed$1(stringTable, oaTable, cellTable, table), study.Tables), tryInclude("DataMap", (dm) => encoderCompressed$2(stringTable, oaTable, cellTable, dm), study.DataMap), tryIncludeSeq("RegisteredAssayIdentifiers", (value_9) => ({
98
+ }), study.PublicReleaseDate), tryIncludeSeq("Publications", encoder$1, study.Publications), tryIncludeSeq("Contacts", encoder$2, study.Contacts), tryIncludeSeq("StudyDesignDescriptors", OntologyAnnotation_encoder, study.StudyDesignDescriptors), tryIncludeSeq("Tables", (table) => encoderCompressed$1(stringTable, oaTable, cellTable, table), study.Tables), tryInclude("Datamap", (dm) => encoderCompressed$2(stringTable, oaTable, cellTable, dm), study.Datamap), tryIncludeSeq("RegisteredAssayIdentifiers", (value_9) => ({
99
99
  Encode(helpers_5) {
100
100
  return helpers_5.encodeString(value_9);
101
101
  }
@@ -110,7 +110,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, study) {
110
110
  function decoderCompressed(stringTable, oaTable, cellTable) {
111
111
  return object((get$) => {
112
112
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
113
- return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((arg_19 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
113
+ return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((arg_19 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_9 = get$.Optional, objectArg_9.Field("Datamap", arg_19))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
114
114
  });
115
115
  }
116
116
  function ROCrate_genID(a) {
@@ -2,7 +2,7 @@ import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/
2
2
  import { map, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { tryInclude, tryIncludeSeq } from './Encode.js';
4
4
  import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from './OntologyAnnotation.js';
5
- import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './DataMap/DataMap.js';
5
+ import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './Datamap/Datamap.js';
6
6
  import { encoder as encoder$2, decoder as decoder$1 } from './Process/Component.js';
7
7
  import { encoder as encoder$3, decoder as decoder$3 } from './Person.js';
8
8
  import { encoder as encoder$4, decoder as decoder$4 } from './Comment.js';
@@ -32,7 +32,7 @@ function encoder(workflow) {
32
32
  Encode(helpers_4) {
33
33
  return helpers_4.encodeString(value_7);
34
34
  }
35
- }), workflow.Version), tryInclude("DataMap", encoder$1, workflow.DataMap), tryIncludeSeq("SubWorkflowIdentifiers", (value_9) => ({
35
+ }), workflow.Version), tryInclude("Datamap", encoder$1, workflow.Datamap), tryIncludeSeq("SubWorkflowIdentifiers", (value_9) => ({
36
36
  Encode(helpers_5) {
37
37
  return helpers_5.encodeString(value_9);
38
38
  }
@@ -46,7 +46,7 @@ function encoder(workflow) {
46
46
  }
47
47
  const decoder = object((get$) => {
48
48
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
49
- return ArcWorkflow.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$1), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", decoder$2))), unwrap((arg_21 = resizeArray(decoder$3), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), void 0, unwrap((arg_23 = resizeArray(decoder$4), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
49
+ return ArcWorkflow.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$1), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("Datamap", decoder$2))), unwrap((arg_21 = resizeArray(decoder$3), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), void 0, unwrap((arg_23 = resizeArray(decoder$4), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
50
50
  });
51
51
  function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
52
52
  let value;
@@ -70,7 +70,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
70
70
  Encode(helpers_4) {
71
71
  return helpers_4.encodeString(value_7);
72
72
  }
73
- }), workflow.Version), tryInclude("DataMap", (dm) => encoderCompressed$1(stringTable, oaTable, cellTable, dm), workflow.DataMap), tryIncludeSeq("SubWorkflowIdentifiers", (value_9) => ({
73
+ }), workflow.Version), tryInclude("Datamap", (dm) => encoderCompressed$1(stringTable, oaTable, cellTable, dm), workflow.Datamap), tryIncludeSeq("SubWorkflowIdentifiers", (value_9) => ({
74
74
  Encode(helpers_5) {
75
75
  return helpers_5.encodeString(value_9);
76
76
  }
@@ -85,7 +85,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
85
85
  function decoderCompressed(stringTable, oaTable, cellTable) {
86
86
  return object((get$) => {
87
87
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
88
- return ArcWorkflow.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$1), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((arg_19 = decoderCompressed$1(stringTable, oaTable, cellTable), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(decoder$3), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), void 0, unwrap((arg_23 = resizeArray(decoder$4), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
88
+ return ArcWorkflow.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$1), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((arg_19 = decoderCompressed$1(stringTable, oaTable, cellTable), objectArg_9 = get$.Optional, objectArg_9.Field("Datamap", arg_19))), unwrap((arg_21 = resizeArray(decoder$3), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), void 0, unwrap((arg_23 = resizeArray(decoder$4), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
89
89
  });
90
90
  }
91
91
 
@@ -3,7 +3,7 @@ import { int32 } from '@fable-org/fable-library-js/Int32.js';
3
3
  import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
4
4
  import { Person } from './Core/Person.js';
5
5
  import { LDGraph, LDNode } from './ROCrate/LDObject.js';
6
- import { DataMap } from './Core/DataMap.js';
6
+ import { Datamap } from './Core/Datamap.js';
7
7
  import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
8
8
  import { FSharpList } from '@fable-org/fable-library-js/List.js';
9
9
  import { ARC } from './ARC.js';
@@ -31,8 +31,8 @@ export declare function JsonHelper_PersonJson_$reflection(): TypeInfo;
31
31
  export declare function JsonHelper_PersonJson_$ctor(): JsonHelper_PersonJson;
32
32
  export declare class JsonHelper_DatamapJson {
33
33
  constructor();
34
- fromJsonString(s: string): DataMap;
35
- toJsonString(datamap: DataMap, spaces?: int32): string;
34
+ fromJsonString(s: string): Datamap;
35
+ toJsonString(datamap: Datamap, spaces?: int32): string;
36
36
  }
37
37
  export declare function JsonHelper_DatamapJson_$reflection(): TypeInfo;
38
38
  export declare function JsonHelper_DatamapJson_$ctor(): JsonHelper_DatamapJson;
@@ -3,7 +3,7 @@ import { unwrap } from '../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { class_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
4
4
  import { ARCtrl_Person__Person_fromJsonString_Static_Z721C83C5, ARCtrl_Person__Person_fromISAJsonString_Static_Z721C83C5, ARCtrl_Person__Person_toJsonString_Static_71136F3F, ARCtrl_Person__Person_toISAJsonString_Static_Z3B036AA, ARCtrl_Person__Person_toROCrateJsonString_Static_71136F3F } from './JsonIO/Person.js';
5
5
  import { ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F, ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F } from './JsonIO/LDObject.js';
6
- import { ARCtrl_DataMap__DataMap_fromJsonString_Static_Z721C83C5, ARCtrl_DataMap__DataMap_toJsonString_Static_71136F3F } from './JsonIO/Datamap.js';
6
+ import { ARCtrl_Datamap__Datamap_fromJsonString_Static_Z721C83C5, ARCtrl_Datamap__Datamap_toJsonString_Static_71136F3F } from './JsonIO/Datamap.js';
7
7
  import { ARCtrl_ArcAssay__ArcAssay_fromJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_toJsonString_Static_71136F3F, ARCtrl_ArcAssay__ArcAssay_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcAssay__ArcAssay_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcAssay__ArcAssay_toROCrateJsonString_Static_5CABCA47 } from './JsonIO/Assay.js';
8
8
  import { ARCtrl_ArcStudy__ArcStudy_fromJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_toJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toISAJsonString_Static_Z3FD920F1, ARCtrl_ArcStudy__ArcStudy_toROCrateJsonString_Static_3BA23086 } from './JsonIO/Study.js';
9
9
  import { ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F, ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F } from './JsonIO/Workflow.js';
@@ -71,10 +71,10 @@ class JsonHelper_DatamapJson {
71
71
  constructor() {
72
72
  }
73
73
  fromJsonString(s) {
74
- return ARCtrl_DataMap__DataMap_fromJsonString_Static_Z721C83C5(s);
74
+ return ARCtrl_Datamap__Datamap_fromJsonString_Static_Z721C83C5(s);
75
75
  }
76
76
  toJsonString(datamap, spaces) {
77
- return ARCtrl_DataMap__DataMap_toJsonString_Static_71136F3F(unwrap(spaces))(datamap);
77
+ return ARCtrl_Datamap__Datamap_toJsonString_Static_71136F3F(unwrap(spaces))(datamap);
78
78
  }
79
79
  }
80
80
  function JsonHelper_DatamapJson_$reflection() {