@nfdi4plants/arctrl 3.0.0-beta.12 → 3.0.0-beta.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (229) hide show
  1. package/README.md +30 -3
  2. package/dist/ts/index.d.ts +17 -16
  3. package/dist/ts/index.d.ts.map +1 -1
  4. package/dist/ts/index.js +18 -17
  5. package/dist/ts/ts/ARC.d.ts +11 -6
  6. package/dist/ts/ts/ARC.d.ts.map +1 -1
  7. package/dist/ts/ts/ARC.js +79 -55
  8. package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts +19 -0
  9. package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts.map +1 -0
  10. package/dist/ts/ts/CWL/CWLProcessingUnit.js +26 -0
  11. package/dist/ts/ts/CWL/CWLTypes.d.ts +92 -0
  12. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -0
  13. package/dist/ts/ts/CWL/CWLTypes.js +173 -0
  14. package/dist/ts/ts/CWL/Decode.d.ts +94 -0
  15. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -0
  16. package/dist/ts/ts/CWL/Decode.js +649 -0
  17. package/dist/ts/ts/CWL/Encode.d.ts +28 -0
  18. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -0
  19. package/dist/ts/ts/CWL/Encode.js +546 -0
  20. package/dist/ts/ts/CWL/HashHelpers.d.ts +9 -0
  21. package/dist/ts/ts/CWL/HashHelpers.d.ts.map +1 -0
  22. package/dist/ts/ts/CWL/HashHelpers.js +35 -0
  23. package/dist/ts/ts/CWL/Inputs.d.ts +28 -0
  24. package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -0
  25. package/dist/ts/ts/CWL/Inputs.js +62 -0
  26. package/dist/ts/ts/CWL/Outputs.d.ts +25 -0
  27. package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -0
  28. package/dist/ts/ts/CWL/Outputs.js +59 -0
  29. package/dist/ts/ts/CWL/ParameterReference.d.ts +23 -0
  30. package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -0
  31. package/dist/ts/ts/CWL/ParameterReference.js +60 -0
  32. package/dist/ts/ts/CWL/Requirements.d.ts +71 -0
  33. package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -0
  34. package/dist/ts/ts/CWL/Requirements.js +116 -0
  35. package/dist/ts/ts/CWL/ToolDescription.d.ts +33 -0
  36. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -0
  37. package/dist/ts/ts/CWL/ToolDescription.js +80 -0
  38. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +34 -0
  39. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -0
  40. package/dist/ts/ts/CWL/WorkflowDescription.js +80 -0
  41. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +45 -0
  42. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -0
  43. package/dist/ts/ts/CWL/WorkflowSteps.js +99 -0
  44. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
  45. package/dist/ts/ts/Contract/ARC.js +27 -9
  46. package/dist/ts/ts/Contract/ArcRun.d.ts +6 -0
  47. package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -1
  48. package/dist/ts/ts/Contract/ArcRun.js +131 -4
  49. package/dist/ts/ts/Contract/ArcWorkflow.d.ts +3 -0
  50. package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -1
  51. package/dist/ts/ts/Contract/ArcWorkflow.js +70 -4
  52. package/dist/ts/ts/Contract/Datamap.d.ts +25 -25
  53. package/dist/ts/ts/Contract/Datamap.js +34 -34
  54. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
  55. package/dist/ts/ts/ContractIO/ContractIO.js +3 -1
  56. package/dist/ts/ts/Conversion/Assay.d.ts +13 -0
  57. package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -0
  58. package/dist/ts/ts/Conversion/Assay.js +69 -0
  59. package/dist/ts/ts/Conversion/Basic.d.ts +105 -0
  60. package/dist/ts/ts/Conversion/Basic.d.ts.map +1 -0
  61. package/dist/ts/ts/Conversion/Basic.js +452 -0
  62. package/dist/ts/ts/Conversion/ColumnIndex.d.ts +11 -0
  63. package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map +1 -0
  64. package/dist/ts/ts/Conversion/ColumnIndex.js +71 -0
  65. package/dist/ts/ts/Conversion/Datamap.d.ts +11 -0
  66. package/dist/ts/ts/Conversion/Datamap.d.ts.map +1 -0
  67. package/dist/ts/ts/Conversion/Datamap.js +21 -0
  68. package/dist/ts/ts/Conversion/DateTime.d.ts +4 -0
  69. package/dist/ts/ts/Conversion/DateTime.d.ts.map +1 -0
  70. package/dist/ts/ts/Conversion/DateTime.js +23 -0
  71. package/dist/ts/ts/Conversion/Investigation.d.ts +12 -0
  72. package/dist/ts/ts/Conversion/Investigation.d.ts.map +1 -0
  73. package/dist/ts/ts/Conversion/Investigation.js +59 -0
  74. package/dist/ts/ts/Conversion/Person.d.ts +16 -0
  75. package/dist/ts/ts/Conversion/Person.d.ts.map +1 -0
  76. package/dist/ts/ts/Conversion/Person.js +100 -0
  77. package/dist/ts/ts/Conversion/Process.d.ts +84 -0
  78. package/dist/ts/ts/Conversion/Process.d.ts.map +1 -0
  79. package/dist/ts/ts/Conversion/Process.js +455 -0
  80. package/dist/ts/ts/Conversion/Run.d.ts +26 -0
  81. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -0
  82. package/dist/ts/ts/Conversion/Run.js +190 -0
  83. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts +16 -0
  84. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -0
  85. package/dist/ts/ts/Conversion/ScholarlyArticle.js +116 -0
  86. package/dist/ts/ts/Conversion/Study.d.ts +12 -0
  87. package/dist/ts/ts/Conversion/Study.d.ts.map +1 -0
  88. package/dist/ts/ts/Conversion/Study.js +51 -0
  89. package/dist/ts/ts/Conversion/Table.d.ts +45 -0
  90. package/dist/ts/ts/Conversion/Table.d.ts.map +1 -0
  91. package/dist/ts/ts/Conversion/Table.js +203 -0
  92. package/dist/ts/ts/Conversion/Workflow.d.ts +45 -0
  93. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -0
  94. package/dist/ts/ts/Conversion/Workflow.js +305 -0
  95. package/dist/ts/ts/Conversion.d.ts +23 -274
  96. package/dist/ts/ts/Conversion.d.ts.map +1 -1
  97. package/dist/ts/ts/Conversion.js +62 -1475
  98. package/dist/ts/ts/Core/ArcTypes.d.ts +69 -59
  99. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  100. package/dist/ts/ts/Core/ArcTypes.js +222 -142
  101. package/dist/ts/ts/Core/{DataMap.d.ts → Datamap.d.ts} +24 -24
  102. package/dist/ts/ts/Core/{DataMap.d.ts.map → Datamap.d.ts.map} +1 -1
  103. package/dist/ts/ts/Core/{DataMap.js → Datamap.js} +36 -36
  104. package/dist/ts/ts/Core/Helper/Identifier.d.ts +24 -0
  105. package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -1
  106. package/dist/ts/ts/Core/Helper/Identifier.js +34 -1
  107. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +4 -4
  108. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -1
  109. package/dist/ts/ts/FileSystem/FileSystemTree.js +20 -27
  110. package/dist/ts/ts/Json/Assay.js +5 -5
  111. package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.d.ts.map +1 -1
  112. package/dist/ts/ts/Json/{DataMap/DataMap.d.ts → Datamap/Datamap.d.ts} +6 -6
  113. package/dist/ts/ts/Json/{DataMap/DataMap.d.ts.map → Datamap/Datamap.d.ts.map} +1 -1
  114. package/dist/ts/ts/Json/{DataMap/DataMap.js → Datamap/Datamap.js} +2 -2
  115. package/dist/ts/ts/Json/ROCrate/LDContext.d.ts.map +1 -1
  116. package/dist/ts/ts/Json/ROCrate/LDContext.js +21 -11
  117. package/dist/ts/ts/Json/ROCrate/LDNode.js +2 -2
  118. package/dist/ts/ts/Json/Run.js +5 -5
  119. package/dist/ts/ts/Json/Study.js +5 -5
  120. package/dist/ts/ts/Json/Workflow.d.ts.map +1 -1
  121. package/dist/ts/ts/Json/Workflow.js +10 -11
  122. package/dist/ts/ts/Json.d.ts +3 -3
  123. package/dist/ts/ts/Json.js +3 -3
  124. package/dist/ts/ts/JsonIO/Datamap.d.ts +4 -4
  125. package/dist/ts/ts/JsonIO/Datamap.js +6 -6
  126. package/dist/ts/ts/ROCrate/LDContext.d.ts.map +1 -1
  127. package/dist/ts/ts/ROCrate/LDContext.js +35 -31
  128. package/dist/ts/ts/ROCrate/LDObject.d.ts +2 -2
  129. package/dist/ts/ts/ROCrate/LDObject.js +2 -2
  130. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Comment.d.ts.map +1 -1
  131. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts +61 -0
  132. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts.map +1 -0
  133. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.js +338 -0
  134. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.d.ts +39 -0
  135. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.d.ts.map +1 -0
  136. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.js +219 -0
  137. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.d.ts +43 -0
  138. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.d.ts.map +1 -0
  139. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.js +224 -0
  140. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/CreativeWork.d.ts.map +1 -1
  141. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Dataset.d.ts +32 -22
  142. package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts.map +1 -0
  143. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Dataset.js +45 -0
  144. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/DefinedTerm.d.ts.map +1 -1
  145. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/File.d.ts +10 -4
  146. package/dist/ts/ts/ROCrate/LDTypes/File.d.ts.map +1 -0
  147. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/File.js +34 -1
  148. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.d.ts +59 -0
  149. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.d.ts.map +1 -0
  150. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.js +344 -0
  151. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProcess.d.ts +2 -0
  152. package/dist/ts/ts/ROCrate/LDTypes/LabProcess.d.ts.map +1 -0
  153. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProcess.js +31 -5
  154. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProtocol.d.ts +6 -2
  155. package/dist/ts/ts/ROCrate/LDTypes/LabProtocol.d.ts.map +1 -0
  156. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProtocol.js +66 -15
  157. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Organization.d.ts.map +1 -1
  158. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Person.d.ts.map +1 -1
  159. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PostalAddress.d.ts.map +1 -1
  160. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PropertyValue.d.ts +35 -11
  161. package/dist/ts/ts/ROCrate/LDTypes/PropertyValue.d.ts.map +1 -0
  162. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PropertyValue.js +191 -1
  163. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Sample.d.ts.map +1 -1
  164. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/ScholarlyArticle.d.ts.map +1 -1
  165. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.d.ts +46 -0
  166. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.d.ts.map +1 -0
  167. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.js +247 -0
  168. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.d.ts +12 -0
  169. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.d.ts.map +1 -0
  170. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.js +40 -0
  171. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.d.ts +11 -0
  172. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.d.ts.map +1 -0
  173. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.js +46 -0
  174. package/dist/ts/ts/ROCrate/ROCrateContext.d.ts +2 -2
  175. package/dist/ts/ts/ROCrate/ROCrateContext.d.ts.map +1 -1
  176. package/dist/ts/ts/ROCrate/ROCrateContext.js +6 -6
  177. package/dist/ts/ts/ROCrateIO.js +6 -6
  178. package/dist/ts/ts/Spreadsheet/ArcAssay.js +3 -3
  179. package/dist/ts/ts/Spreadsheet/ArcRun.js +2 -2
  180. package/dist/ts/ts/Spreadsheet/ArcStudy.js +3 -3
  181. package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +2 -2
  182. package/dist/ts/ts/Spreadsheet/Datamap.d.ts +8 -0
  183. package/dist/ts/ts/Spreadsheet/{DataMap.d.ts.map → Datamap.d.ts.map} +1 -1
  184. package/dist/ts/ts/Spreadsheet/{DataMap.js → Datamap.js} +9 -9
  185. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts → DatamapTable/DatamapColumn.d.ts} +1 -1
  186. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts.map → DatamapTable/DatamapColumn.d.ts.map} +1 -1
  187. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.js → DatamapTable/DatamapColumn.js} +1 -1
  188. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts → DatamapTable/DatamapHeader.d.ts} +1 -1
  189. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts.map → DatamapTable/DatamapHeader.d.ts.map} +1 -1
  190. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts → DatamapTable/DatamapTable.d.ts} +5 -5
  191. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts.map → DatamapTable/DatamapTable.d.ts.map} +1 -1
  192. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.js → DatamapTable/DatamapTable.js} +6 -6
  193. package/dist/ts/ts/Spreadsheet/Metadata/Run.js +1 -1
  194. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.d.ts.map +1 -1
  195. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +4 -4
  196. package/dist/ts/ts/Xlsx.d.ts +5 -5
  197. package/dist/ts/ts/Xlsx.js +1 -1
  198. package/dist/ts/ts/fable_modules/DynamicObj.7.1.0/DynObj.fs.js +109 -0
  199. package/package.json +1 -1
  200. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +0 -1
  201. package/dist/ts/ts/ROCrate/Generic/File.d.ts.map +0 -1
  202. package/dist/ts/ts/ROCrate/Generic/LabProcess.d.ts.map +0 -1
  203. package/dist/ts/ts/ROCrate/Generic/LabProtocol.d.ts.map +0 -1
  204. package/dist/ts/ts/ROCrate/Generic/PropertyValue.d.ts.map +0 -1
  205. package/dist/ts/ts/Spreadsheet/DataMap.d.ts +0 -8
  206. /package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.d.ts +0 -0
  207. /package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.js +0 -0
  208. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Comment.d.ts +0 -0
  209. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Comment.js +0 -0
  210. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/CreativeWork.d.ts +0 -0
  211. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/CreativeWork.js +0 -0
  212. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/DefinedTerm.d.ts +0 -0
  213. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/DefinedTerm.js +0 -0
  214. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Organization.d.ts +0 -0
  215. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Organization.js +0 -0
  216. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Person.d.ts +0 -0
  217. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Person.js +0 -0
  218. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PostalAddress.d.ts +0 -0
  219. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PostalAddress.js +0 -0
  220. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Sample.d.ts +0 -0
  221. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Sample.js +0 -0
  222. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/ScholarlyArticle.d.ts +0 -0
  223. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/ScholarlyArticle.js +0 -0
  224. /package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.js → DatamapTable/DatamapHeader.js} +0 -0
  225. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/DynamicObj.fs.js +0 -0
  226. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/FableJS.fs.js +0 -0
  227. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/HashCodes.fs.js +0 -0
  228. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/PropertyHelper.fs.js +0 -0
  229. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/ReflectionUtils.fs.js +0 -0