@nfdi4plants/arctrl 3.0.0-alpha.4 → 3.0.0-beta.10

package/dist/ts/ts/Core/Helper/Regex.js

@@ -0,0 +1,428 @@
+import { match, create } from '../../../node_modules/@fable-org/fable-library-js/RegExp.js';
+import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { parse } from '../../../node_modules/@fable-org/fable-library-js/Int32.js';
+
+function Pattern_handleGroupPatterns(pattern) {
+  return pattern;
+}
+const Pattern_ExcelNumberFormat = `"(?<${"numberFormat"}>(.*?))"`;
+const Pattern_TermAnnotationShortPattern = `(?<${"idspace"}>\\w+?):(?<${"localid"}>\\w+)`;
+const Pattern_TermAnnotationURIPattern = `http://purl.obolibrary.org/obo/(?<${"idspace"}>\\w+?)_(?<${"localid"}>\\w+)`;
+const Pattern_TermAnnotationURIPattern_lessRestrictive = `.*\\/(?<${"idspace"}>\\w+?)[:_](?<${"localid"}>\\w+)`;
+const Pattern_TermAnnotationURIPattern_MS_RO_PO = `.*252F(?<${"idspace"}>\\w+?)_(?<${"localid"}>\\w+)`;
+const Pattern_IOTypePattern = `(Input|Output)\\s*\\[(?<${"iotype"}>.+)\\]`;
+const Pattern_InputPattern = `Input\\s*\\[(?<${"iotype"}>.+)\\]`;
+const Pattern_OutputPattern = `Output\\s*\\[(?<${"iotype"}>.+)\\]`;
+const Pattern_CommentPattern = `Comment\\s*\\[(?<${"commentKey"}>.+)\\]`;
+function ActivePatterns_$007CRegex$007C_$007C(pattern, input) {
+  const m = match(create(Pattern_handleGroupPatterns(pattern)), input.trim());
+  if (m != null) {
+    return m;
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CReferenceColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("(Term Source REF|Term Accession Number)\\s*\\((?<id>.*)\\)", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return {
+      Annotation: r.groups && r.groups.id || ""
+    };
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTermColumn$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("(?<termcolumntype>.+?)\\s*\\[(?<termname>.+)\\]", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return {
+      TermColumnType: r.groups && r.groups.termcolumntype || "",
+      TermName: r.groups && r.groups.termname || ""
+    };
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CUnitColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Unit", input);
+  if (activePatternResult != null) {
+    const o = value(activePatternResult);
+    return o[0];
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CParameterColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Parameter":
+      case "Parameter Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CFactorColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Factor":
+      case "Factor Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Characteristic":
+      case "Characteristics":
+      case "Characteristics Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CComponentColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Component":
+      case "Component Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTermAnnotationShort$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, input);
+  if (activePatternResult != null) {
+    const value$1 = value(activePatternResult);
+    return {
+      IDSpace: value$1.groups && value$1.groups.idspace || "",
+      LocalID: value$1.groups && value$1.groups.localid || ""
+    };
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTermAnnotation$007C_$007C(input) {
+  let matchResult, value$1;
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, input);
+  if (activePatternResult != null) {
+    matchResult = 0;
+    value$1 = value(activePatternResult);
+  } else {
+    const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern, input);
+    if (activePatternResult_1 != null) {
+      matchResult = 0;
+      value$1 = value(activePatternResult_1);
+    } else {
+      const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_lessRestrictive, input);
+      if (activePatternResult_2 != null) {
+        matchResult = 0;
+        value$1 = value(activePatternResult_2);
+      } else {
+        const activePatternResult_3 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_MS_RO_PO, input);
+        if (activePatternResult_3 != null) {
+          matchResult = 0;
+          value$1 = value(activePatternResult_3);
+        } else {
+          matchResult = 1;
+        }
+      }
+    }
+  }
+  switch (matchResult) {
+    case 0:
+      return {
+        IDSpace: value$1.groups && value$1.groups.idspace || "",
+        LocalID: value$1.groups && value$1.groups.localid || ""
+      };
+    default:
+      return void 0;
+  }
+}
+function ActivePatterns_$007CTSRColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Term Source REF\\s*\\((?<id>.*)\\)", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.groups && r.groups.id || "";
+    const activePatternResult_1 = ActivePatterns_$007CTermAnnotation$007C_$007C(matchValue);
+    if (activePatternResult_1 != null) {
+      const r_1 = value(activePatternResult_1);
+      return r_1;
+    } else {
+      return {
+        IDSpace: "",
+        LocalID: ""
+      };
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTANColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Term Accession Number\\s*\\((?<id>.*)\\)", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.groups && r.groups.id || "";
+    const activePatternResult_1 = ActivePatterns_$007CTermAnnotation$007C_$007C(matchValue);
+    if (activePatternResult_1 != null) {
+      const r_1 = value(activePatternResult_1);
+      return r_1;
+    } else {
+      return {
+        IDSpace: "",
+        LocalID: ""
+      };
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CInputColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_InputPattern, input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r.groups && r.groups.iotype || "";
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007COutputColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_OutputPattern, input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r.groups && r.groups.iotype || "";
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CAutoGeneratedTableName$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("^New\\sTable\\s(?<number>\\d+)$", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return parse(r.groups && r.groups.number || "", 511, false, 32);
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CComment$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_CommentPattern, input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r.groups && r.groups.commentKey || "";
+  } else {
+    return void 0;
+  }
+}
+function tryParseReferenceColumnHeader(str) {
+  const matchValue = str.trim();
+  const activePatternResult = ActivePatterns_$007CReferenceColumnHeader$007C_$007C(matchValue);
+  if (activePatternResult != null) {
+    const v = value(activePatternResult);
+    return v;
+  } else {
+    return void 0;
+  }
+}
+function tryParseTermAnnotationShort(str) {
+  const matchValue = str.trim();
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, matchValue);
+  if (activePatternResult != null) {
+    const value$1 = value(activePatternResult);
+    return {
+      IDSpace: value$1.groups && value$1.groups.idspace || "",
+      LocalID: value$1.groups && value$1.groups.localid || ""
+    };
+  } else {
+    return void 0;
+  }
+}
+function tryParseTermAnnotation(str) {
+  const matchValue = str.trim();
+  let matchResult, value$1;
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, matchValue);
+  if (activePatternResult != null) {
+    matchResult = 0;
+    value$1 = value(activePatternResult);
+  } else {
+    const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern, matchValue);
+    if (activePatternResult_1 != null) {
+      matchResult = 0;
+      value$1 = value(activePatternResult_1);
+    } else {
+      const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_lessRestrictive, matchValue);
+      if (activePatternResult_2 != null) {
+        matchResult = 0;
+        value$1 = value(activePatternResult_2);
+      } else {
+        const activePatternResult_3 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_MS_RO_PO, matchValue);
+        if (activePatternResult_3 != null) {
+          matchResult = 0;
+          value$1 = value(activePatternResult_3);
+        } else {
+          matchResult = 1;
+        }
+      }
+    }
+  }
+  switch (matchResult) {
+    case 0:
+      return {
+        IDSpace: value$1.groups && value$1.groups.idspace || "",
+        LocalID: value$1.groups && value$1.groups.localid || ""
+      };
+    default:
+      return void 0;
+  }
+}
+function tryGetTermAnnotationShortString(str) {
+  return map((r) => r.IDSpace + ":" + r.LocalID, tryParseTermAnnotation(str));
+}
+function getTermAnnotationShortString(str) {
+  const matchValue = tryGetTermAnnotationShortString(str);
+  if (matchValue == null) {
+    throw new Error(`Unable to parse '${str}' to term accession.`);
+  } else {
+    return value(matchValue);
+  }
+}
+function tryParseExcelNumberFormat(headerStr) {
+  const matchValue = headerStr.trim();
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_ExcelNumberFormat, matchValue);
+  if (activePatternResult != null) {
+    const value$1 = value(activePatternResult);
+    return value$1.groups && value$1.groups.numberFormat || "";
+  } else {
+    return void 0;
+  }
+}
+function tryParseIOTypeHeader(headerStr) {
+  const matchValue = headerStr.trim();
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_IOTypePattern, matchValue);
+  if (activePatternResult != null) {
+    const value$1 = value(activePatternResult);
+    return value$1.groups && value$1.groups.iotype || "";
+  } else {
+    return void 0;
+  }
+}
+function tryParseTermColumn(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseUnitColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CUnitColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseParameterColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CParameterColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseFactorColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CFactorColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseCharacteristicColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseComponentColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CComponentColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseTSRColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CTSRColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseTANColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CTANColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseInputColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CInputColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseOutputColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007COutputColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+
+export { ActivePatterns_$007CAutoGeneratedTableName$007C_$007C, ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C, ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007CComponentColumnHeader$007C_$007C, ActivePatterns_$007CFactorColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CParameterColumnHeader$007C_$007C, ActivePatterns_$007CReferenceColumnHeader$007C_$007C, ActivePatterns_$007CRegex$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTermAnnotation$007C_$007C, ActivePatterns_$007CTermAnnotationShort$007C_$007C, ActivePatterns_$007CTermColumn$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C, Pattern_CommentPattern, Pattern_ExcelNumberFormat, Pattern_IOTypePattern, Pattern_InputPattern, Pattern_OutputPattern, Pattern_TermAnnotationShortPattern, Pattern_TermAnnotationURIPattern, Pattern_TermAnnotationURIPattern_MS_RO_PO, Pattern_TermAnnotationURIPattern_lessRestrictive, Pattern_handleGroupPatterns, getTermAnnotationShortString, tryGetTermAnnotationShortString, tryParseCharacteristicColumnHeader, tryParseComponentColumnHeader, tryParseExcelNumberFormat, tryParseFactorColumnHeader, tryParseIOTypeHeader, tryParseInputColumnHeader, tryParseOutputColumnHeader, tryParseParameterColumnHeader, tryParseReferenceColumnHeader, tryParseTANColumnHeader, tryParseTSRColumnHeader, tryParseTermAnnotation, tryParseTermAnnotationShort, tryParseTermColumn, tryParseUnitColumnHeader };

package/dist/ts/ts/Core/Helper/SemVer.d.ts

@@ -0,0 +1,20 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
+export declare class SemVer extends Record implements IEquatable<SemVer>, IComparable<SemVer> {
+    readonly Major: int32;
+    readonly Minor: int32;
+    readonly Patch: int32;
+    readonly PreRelease: Option<string>;
+    readonly Metadata: Option<string>;
+    constructor(Major: int32, Minor: int32, Patch: int32, PreRelease: Option<string>, Metadata: Option<string>);
+}
+export declare function SemVer_$reflection(): TypeInfo;
+export declare function SemVer_make(major: int32, minor: int32, patch: int32, pre: Option<string>, meta: Option<string>): SemVer;
+export declare function SemVer_create_Z55658624(major: int32, minor: int32, patch: int32, pre?: string, meta?: string): SemVer;
+export declare function SemVer_tryOfString_Z721C83C5(str: string): Option<SemVer>;
+export declare function SemVer__AsString(this$: SemVer): string;
+//# sourceMappingURL=SemVer.d.ts.map

package/dist/ts/ts/Core/Helper/SemVer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"SemVer.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Helper/SemVer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAY,MAAM,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAS,KAAK,EAAE,MAAM,sCAAsC,CAAC;AACpE,OAAO,EAA4B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACzF,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAAqD,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAKxH,eAAO,MAAM,iBAAiB,yHAAyH,CAAC;AAExJ,qBAAa,MAAO,SAAQ,MAAO,YAAW,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC;IACjF,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACpC,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;gBACtB,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC;CAQ7G;AAED,wBAAgB,kBAAkB,IAAI,QAAQ,CAE7C;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,MAAM,CAEvH;AAED,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,MAAM,CAErH;AAED,wBAAgB,4BAA4B,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAUxE;AAED,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAWtD"}

package/dist/ts/ts/Core/Helper/SemVer.js

@@ -0,0 +1,52 @@
+import { Record, toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { parse } from '../../../node_modules/@fable-org/fable-library-js/Int32.js';
+import { value, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { record_type, int32_type, option_type, string_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { ActivePatterns_$007CRegex$007C_$007C } from './Regex.js';
+import { StringBuilder_$ctor, StringBuilder__Append_Z721C83C5 } from '../../../node_modules/@fable-org/fable-library-js/System.Text.js';
+import { toText, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
+
+const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
+class SemVer extends Record {
+  constructor(Major, Minor, Patch, PreRelease, Metadata) {
+    super();
+    this.Major = Major | 0;
+    this.Minor = Minor | 0;
+    this.Patch = Patch | 0;
+    this.PreRelease = PreRelease;
+    this.Metadata = Metadata;
+  }
+}
+function SemVer_$reflection() {
+  return record_type("ARCtrl.Helper.SemVer.SemVer", [], SemVer, () => [["Major", int32_type], ["Minor", int32_type], ["Patch", int32_type], ["PreRelease", option_type(string_type)], ["Metadata", option_type(string_type)]]);
+}
+function SemVer_make(major, minor, patch, pre, meta) {
+  return new SemVer(major, minor, patch, pre, meta);
+}
+function SemVer_create_Z55658624(major, minor, patch, pre, meta) {
+  return new SemVer(major, minor, patch, pre, meta);
+}
+function SemVer_tryOfString_Z721C83C5(str) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(SemVerAux_Pattern, str);
+  if (activePatternResult != null) {
+    const m = value(activePatternResult);
+    const g = m;
+    return SemVer_create_Z55658624(parse(g.groups && g.groups.major || "", 511, false, 32), parse(g.groups && g.groups.minor || "", 511, false, 32), parse(g.groups && g.groups.patch || "", 511, false, 32), unwrap((g.groups && g.groups.pre) != null ? g.groups && g.groups.pre || "" : void 0), unwrap((g.groups && g.groups.build) != null ? g.groups && g.groups.build || "" : void 0));
+  } else {
+    return void 0;
+  }
+}
+function SemVer__AsString(this$) {
+  let arg_3, arg_4;
+  const sb = StringBuilder_$ctor();
+  StringBuilder__Append_Z721C83C5(sb, toText(printf("%i.%i.%i"))(this$.Major)(this$.Minor)(this$.Patch));
+  if (this$.PreRelease != null) {
+    StringBuilder__Append_Z721C83C5(sb, (arg_3 = value(this$.PreRelease), toText(printf("-%s"))(arg_3)));
+  }
+  if (this$.Metadata != null) {
+    StringBuilder__Append_Z721C83C5(sb, (arg_4 = value(this$.Metadata), toText(printf("+%s"))(arg_4)));
+  }
+  return toString(sb);
+}
+
+export { SemVer, SemVerAux_Pattern, SemVer_$reflection, SemVer__AsString, SemVer_create_Z55658624, SemVer_make, SemVer_tryOfString_Z721C83C5 };

package/dist/ts/ts/Core/Helper/Url.d.ts

@@ -0,0 +1,10 @@
+import { IMap } from '@fable-org/fable-library-js/Util.js';
+export declare function OntobeeParser(tsr: string, localTan: string): string;
+export declare function BioregistryParser(tsr: string, localTan: string): string;
+export declare function OntobeeDPBOParser(tsr: string, localTan: string): string;
+export declare function MSParser(tsr: string, localTan: string): string;
+export declare function POParser(tsr: string, localTan: string): string;
+export declare function ROParser(tsr: string, localTan: string): string;
+export declare const uriParserCollection: IMap<string, ((arg0: string) => ((arg0: string) => string))>;
+export declare function createOAUri(tsr: string, localTan: string): string;
+//# sourceMappingURL=Url.d.ts.map

package/dist/ts/ts/Core/Helper/Url.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Url.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Helper/Url.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAG3D,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEnE;AAED,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEvE;AAED,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEvE;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,eAAO,MAAM,mBAAmB,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,CAAC,CAAo0F,CAAC;AAEl6F,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAQjE"}

package/dist/ts/ts/Core/Helper/Url.js

@@ -0,0 +1,32 @@
+import { Dictionary_ofSeq, Dictionary_tryFind } from './Collections.js';
+import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+
+function OntobeeParser(tsr, localTan) {
+  return `${"http://purl.obolibrary.org/obo/"}${tsr}_${localTan}`;
+}
+function BioregistryParser(tsr, localTan) {
+  return `${"https://bioregistry.io/"}${tsr}:${localTan}`;
+}
+function OntobeeDPBOParser(tsr, localTan) {
+  return `${"http://purl.org/nfdi4plants/ontology/dpbo/"}${tsr}_${localTan}`;
+}
+function MSParser(tsr, localTan) {
+  return `${"https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F"}${tsr}_${localTan}`;
+}
+function POParser(tsr, localTan) {
+  return `${"https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F"}${tsr}_${localTan}`;
+}
+function ROParser(tsr, localTan) {
+  return `${"https://www.ebi.ac.uk/ols4/ontologies/ro/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F"}${tsr}_${localTan}`;
+}
+const uriParserCollection = Dictionary_ofSeq([["DPBO", (tsr) => (localTan) => OntobeeDPBOParser(tsr, localTan)], ["MS", (tsr_1) => (localTan_1) => MSParser(tsr_1, localTan_1)], ["PO", (tsr_2) => (localTan_2) => POParser(tsr_2, localTan_2)], ["RO", (tsr_3) => (localTan_3) => ROParser(tsr_3, localTan_3)], ["ENVO", (tsr_4) => (localTan_4) => BioregistryParser(tsr_4, localTan_4)], ["CHEBI", (tsr_5) => (localTan_5) => BioregistryParser(tsr_5, localTan_5)], ["GO", (tsr_6) => (localTan_6) => BioregistryParser(tsr_6, localTan_6)], ["OBI", (tsr_7) => (localTan_7) => BioregistryParser(tsr_7, localTan_7)], ["PATO", (tsr_8) => (localTan_8) => BioregistryParser(tsr_8, localTan_8)], ["PECO", (tsr_9) => (localTan_9) => BioregistryParser(tsr_9, localTan_9)], ["TO", (tsr_10) => (localTan_10) => BioregistryParser(tsr_10, localTan_10)], ["UO", (tsr_11) => (localTan_11) => BioregistryParser(tsr_11, localTan_11)], ["EFO", (tsr_12) => (localTan_12) => BioregistryParser(tsr_12, localTan_12)], ["NCIT", (tsr_13) => (localTan_13) => BioregistryParser(tsr_13, localTan_13)], ["OMP", (tsr_14) => (localTan_14) => BioregistryParser(tsr_14, localTan_14)]]);
+function createOAUri(tsr, localTan) {
+  const matchValue = Dictionary_tryFind(tsr, uriParserCollection);
+  if (matchValue == null) {
+    return OntobeeParser(tsr, localTan);
+  } else {
+    return value(matchValue)(tsr)(localTan);
+  }
+}
+
+export { BioregistryParser, MSParser, OntobeeDPBOParser, OntobeeParser, POParser, ROParser, createOAUri, uriParserCollection };

package/dist/ts/ts/Core/IdentifierSetters.d.ts

@@ -0,0 +1,9 @@
+import { ArcTable } from './Table/ArcTable.js';
+import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './ArcTypes.js';
+export declare function setArcTableName(newName: string, table: ArcTable): ArcTable;
+export declare function setAssayIdentifier(newIdentifier: string, assay: ArcAssay): ArcAssay;
+export declare function setStudyIdentifier(newIdentifier: string, study: ArcStudy): ArcStudy;
+export declare function setWorkflowIdentifier(newIdentifier: string, workflow: ArcWorkflow): ArcWorkflow;
+export declare function setRunIdentifier(newIdentifier: string, run: ArcRun): ArcRun;
+export declare function setInvestigationIdentifier(newIdentifier: string, investigation: ArcInvestigation): ArcInvestigation;
+//# sourceMappingURL=IdentifierSetters.d.ts.map

package/dist/ts/ts/Core/IdentifierSetters.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"IdentifierSetters.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/IdentifierSetters.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAE1F,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAI1E;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,qBAAqB,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,WAAW,GAAG,WAAW,CAI/F;AAED,wBAAgB,gBAAgB,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,CAI3E;AAED,wBAAgB,0BAA0B,CAAC,aAAa,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,gBAAgB,CAInH"}

package/dist/ts/ts/Core/IdentifierSetters.js

@@ -0,0 +1,34 @@
+import { checkValidCharacters } from './Helper/Identifier.js';
+
+function setArcTableName(newName, table) {
+  checkValidCharacters(newName);
+  table.Name = newName;
+  return table;
+}
+function setAssayIdentifier(newIdentifier, assay) {
+  checkValidCharacters(newIdentifier);
+  assay.Identifier = newIdentifier;
+  return assay;
+}
+function setStudyIdentifier(newIdentifier, study) {
+  checkValidCharacters(newIdentifier);
+  study.Identifier = newIdentifier;
+  return study;
+}
+function setWorkflowIdentifier(newIdentifier, workflow) {
+  checkValidCharacters(newIdentifier);
+  workflow.Identifier = newIdentifier;
+  return workflow;
+}
+function setRunIdentifier(newIdentifier, run) {
+  checkValidCharacters(newIdentifier);
+  run.Identifier = newIdentifier;
+  return run;
+}
+function setInvestigationIdentifier(newIdentifier, investigation) {
+  checkValidCharacters(newIdentifier);
+  investigation.Identifier = newIdentifier;
+  return investigation;
+}
+
+export { setArcTableName, setAssayIdentifier, setInvestigationIdentifier, setRunIdentifier, setStudyIdentifier, setWorkflowIdentifier };

package/dist/ts/ts/Core/OntologyAnnotation.d.ts

@@ -0,0 +1,57 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Comment$ } from './Comment.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { IISAPrintable } from './Helper/Printer.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare class OntologyAnnotation implements IISAPrintable {
+    _name: Option<string>;
+    _termSourceREF: Option<string>;
+    _termAccessionNumber: Option<string>;
+    _comments: Comment$[];
+    _tanInfo: Option<{
+        IDSpace: string;
+        LocalID: string;
+    }>;
+    constructor(name?: string, tsr?: string, tan?: string, comments?: Comment$[]);
+    get Name(): string | undefined;
+    set Name(name: Option<string>);
+    get TermSourceREF(): string | undefined;
+    set TermSourceREF(tsr: Option<string>);
+    get TermAccessionNumber(): string | undefined;
+    set TermAccessionNumber(tan: Option<string>);
+    get Comments(): Comment$[];
+    set Comments(comments: Comment$[]);
+    static make(name: Option<string>, tsr: Option<string>, tan: Option<string>, comments: Comment$[]): OntologyAnnotation;
+    static create(name?: string, tsr?: string, tan?: string, comments?: Comment$[]): OntologyAnnotation;
+    get TANInfo(): {
+        IDSpace: string;
+        LocalID: string;
+    } | undefined;
+    get NameText(): string;
+    static createUriAnnotation(termSourceRef: string, localTAN: string): string;
+    static fromTermAnnotation(tan: string, name?: string): OntologyAnnotation;
+    get TermAccessionShort(): string;
+    get TermAccessionOntobeeUrl(): string;
+    get TermAccessionAndOntobeeUrlIfShort(): string;
+    static toStringObject(oa: OntologyAnnotation, asOntobeePurlUrlIfShort?: boolean): {
+        TermAccessionNumber: string;
+        TermName: string;
+        TermSourceREF: string;
+    };
+    toString(): string;
+    isEmpty(): boolean;
+    GetHashCode(): int32;
+    Equals(obj: any): boolean;
+    Copy(): OntologyAnnotation;
+    static computeTanInfo(tan?: string, tsr?: string): Option<{
+        IDSpace: string;
+        LocalID: string;
+    }>;
+    Print(): string;
+    PrintCompact(): string;
+    CompareTo(obj: any): int32;
+    recomputeTanInfo(): void;
+}
+export declare function OntologyAnnotation_$reflection(): TypeInfo;
+export declare function OntologyAnnotation_$ctor_Z54349580(name?: string, tsr?: string, tan?: string, comments?: Comment$[]): OntologyAnnotation;
+//# sourceMappingURL=OntologyAnnotation.d.ts.map

package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"OntologyAnnotation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/OntologyAnnotation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAgC,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACrG,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AASxC,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAE7D,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,qBAAa,kBAAmB,YAAW,aAAa;IACpD,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACtB,cAAc,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAC/B,oBAAoB,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACrC,SAAS,EAAE,QAAQ,EAAE,CAAC;IACtB,QAAQ,EAAE,MAAM,CAAC;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;gBAC3C,IAAI,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE;IAO5E,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAG7B;IACD,IAAI,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAG5B;IACD,IAAI,aAAa,IAAI,MAAM,GAAG,SAAS,CAGtC;IACD,IAAI,aAAa,CAAC,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAIpC;IACD,IAAI,mBAAmB,IAAI,MAAM,GAAG,SAAS,CAG5C;IACD,IAAI,mBAAmB,CAAC,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAI1C;IACD,IAAI,QAAQ,IAAI,QAAQ,EAAE,CAGzB;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,QAAQ,EAAE,EAGhC;IACD,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,kBAAkB;IAGrH,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,GAAG,kBAAkB;IAInG,IAAI,OAAO,IAAI;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,GAAG,SAAS,CAG9D;IACD,IAAI,QAAQ,IAAI,MAAM,CAGrB;IACD,MAAM,CAAC,mBAAmB,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM;IAG3E,MAAM,CAAC,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,kBAAkB;IAWzE,IAAI,kBAAkB,IAAI,MAAM,CAU/B;IACD,IAAI,uBAAuB,IAAI,MAAM,CAUpC;IACD,IAAI,iCAAiC,IAAI,MAAM,CAU9C;IACD,MAAM,CAAC,cAAc,CAAC,EAAE,EAAE,kBAAkB,EAAE,uBAAuB,CAAC,EAAE,OAAO,GAAG;QAAE,mBAAmB,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC;QAAC,aAAa,EAAE,MAAM,CAAA;KAAE;IAW1J,QAAQ,IAAI,MAAM;IAoBlB,OAAO,IAAI,OAAO;IAIlB,WAAW,IAAI,KAAK;IAKpB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAIzB,IAAI,IAAI,kBAAkB;IAQ1B,MAAM,CAAC,cAAc,CAAC,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC;IAc/F,KAAK,IAAI,MAAM;IAIf,YAAY,IAAI,MAAM;IAItB,SAAS,CAAC,GAAG,EAAE,GAAG,GAAG,KAAK;IAY1B,gBAAgB,IAAI,IAAI;CAK3B;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED,wBAAgB,kCAAkC,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,GAAG,kBAAkB,CAEvI"}