@nfdi4plants/arctrl 3.0.0-alpha.4 → 3.0.0-beta.10

package/dist/ts/esm/ts/Json/Person.js

@@ -1,329 +0,0 @@
-import { ofArray, choose } from "@fable-org/fable-library-js/List.js";
-import { defaultArg, value as value_18, unwrap, map } from "@fable-org/fable-library-js/Option.js";
-import { tryIncludeSeq, tryInclude } from "./Encode.js";
-import { OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./OntologyAnnotation.js";
-import { ROCrate_decoderDisambiguatingDescription, ROCrate_encoderDisambiguatingDescription, decoder as decoder_1, encoder as encoder_1 } from "./Comment.js";
-import { tryPick, map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-import { Person } from "../Core/Person.js";
-import { array as array_3, map as map_3, resizeArray, string, object } from "../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
-import { join, split, replace } from "@fable-org/fable-library-js/String.js";
-import { context_jsonvalue } from "./context/rocrate/isa_organization_context.js";
-import { contextMinimal_jsonValue, context_jsonvalue as context_jsonvalue_1 } from "./context/rocrate/isa_person_context.js";
-import { map as map_2 } from "@fable-org/fable-library-js/Array.js";
-import { Person_setOrcidFromComments, Person_setCommentFromORCID } from "../Core/Conversion.js";
-import { encode } from "./IDTable.js";
-import { Decode_objectNoAdditionalProperties } from "./Decode.js";
-export function encoder(person) {
-    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("firstName", (value) => ({
-            Encode(helpers) {
-                return helpers.encodeString(value);
-            },
-        }), person.FirstName), tryInclude("lastName", (value_2) => ({
-            Encode(helpers_1) {
-                return helpers_1.encodeString(value_2);
-            },
-        }), person.LastName), tryInclude("midInitials", (value_4) => ({
-            Encode(helpers_2) {
-                return helpers_2.encodeString(value_4);
-            },
-        }), person.MidInitials), tryInclude("orcid", (value_6) => ({
-            Encode(helpers_3) {
-                return helpers_3.encodeString(value_6);
-            },
-        }), person.ORCID), tryInclude("email", (value_8) => ({
-            Encode(helpers_4) {
-                return helpers_4.encodeString(value_8);
-            },
-        }), person.EMail), tryInclude("phone", (value_10) => ({
-            Encode(helpers_5) {
-                return helpers_5.encodeString(value_10);
-            },
-        }), person.Phone), tryInclude("fax", (value_12) => ({
-            Encode(helpers_6) {
-                return helpers_6.encodeString(value_12);
-            },
-        }), person.Fax), tryInclude("address", (value_14) => ({
-            Encode(helpers_7) {
-                return helpers_7.encodeString(value_14);
-            },
-        }), person.Address), tryInclude("affiliation", (value_16) => ({
-            Encode(helpers_8) {
-                return helpers_8.encodeString(value_16);
-            },
-        }), person.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_encoder, person.Roles), tryIncludeSeq("comments", encoder_1, person.Comments)]));
-    return {
-        Encode(helpers_9) {
-            const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
-            return helpers_9.encodeObject(arg);
-        },
-    };
-}
-export const decoder = object((get$) => {
-    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
-    return new Person(unwrap((objectArg = get$.Optional, objectArg.Field("orcid", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("lastName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("firstName", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("email", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("phone", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("fax", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("address", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string))), unwrap((arg_19 = resizeArray(OntologyAnnotation_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", arg_19)))), unwrap((arg_21 = resizeArray(decoder_1), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21)))));
-});
-export function ROCrate_genID(p) {
-    const orcid = tryPick((c) => {
-        const matchValue = c.Name;
-        const matchValue_1 = c.Value;
-        let matchResult, n, v;
-        if (matchValue != null) {
-            if (matchValue_1 != null) {
-                matchResult = 0;
-                n = value_18(matchValue);
-                v = value_18(matchValue_1);
-            }
-            else {
-                matchResult = 1;
-            }
-        }
-        else {
-            matchResult = 1;
-        }
-        switch (matchResult) {
-            case 0:
-                if (((n === "orcid") ? true : (n === "Orcid")) ? true : (n === "ORCID")) {
-                    return v;
-                }
-                else {
-                    return undefined;
-                }
-            default:
-                return undefined;
-        }
-    }, p.Comments);
-    if (orcid == null) {
-        const matchValue_3 = p.EMail;
-        if (matchValue_3 == null) {
-            const matchValue_4 = p.FirstName;
-            const matchValue_5 = p.MidInitials;
-            const matchValue_6 = p.LastName;
-            let matchResult_1, fn, ln, mn, fn_1, ln_1, ln_2, fn_2;
-            if (matchValue_4 == null) {
-                if (matchValue_5 == null) {
-                    if (matchValue_6 != null) {
-                        matchResult_1 = 2;
-                        ln_2 = value_18(matchValue_6);
-                    }
-                    else {
-                        matchResult_1 = 4;
-                    }
-                }
-                else {
-                    matchResult_1 = 4;
-                }
-            }
-            else if (matchValue_5 == null) {
-                if (matchValue_6 == null) {
-                    matchResult_1 = 3;
-                    fn_2 = value_18(matchValue_4);
-                }
-                else {
-                    matchResult_1 = 1;
-                    fn_1 = value_18(matchValue_4);
-                    ln_1 = value_18(matchValue_6);
-                }
-            }
-            else if (matchValue_6 != null) {
-                matchResult_1 = 0;
-                fn = value_18(matchValue_4);
-                ln = value_18(matchValue_6);
-                mn = value_18(matchValue_5);
-            }
-            else {
-                matchResult_1 = 4;
-            }
-            switch (matchResult_1) {
-                case 0:
-                    return (((("#" + replace(fn, " ", "_")) + "_") + replace(mn, " ", "_")) + "_") + replace(ln, " ", "_");
-                case 1:
-                    return (("#" + replace(fn_1, " ", "_")) + "_") + replace(ln_1, " ", "_");
-                case 2:
-                    return "#" + replace(ln_2, " ", "_");
-                case 3:
-                    return "#" + replace(fn_2, " ", "_");
-                default:
-                    return "#EmptyPerson";
-            }
-        }
-        else {
-            return value_18(matchValue_3);
-        }
-    }
-    else {
-        return value_18(orcid);
-    }
-}
-export function ROCrate_Affiliation_encoder(affiliation) {
-    let value_1;
-    const idStr = `#Organization_${affiliation}`;
-    const values_1 = [["@type", {
-                Encode(helpers) {
-                    return helpers.encodeString("Organization");
-                },
-            }], ["@id", (value_1 = replace(idStr, " ", "_"), {
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_1);
-                },
-            })], ["name", {
-                Encode(helpers_2) {
-                    return helpers_2.encodeString(affiliation);
-                },
-            }], ["@context", context_jsonvalue]];
-    return {
-        Encode(helpers_3) {
-            const arg = map_1((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_3)], values_1);
-            return helpers_3.encodeObject(arg);
-        },
-    };
-}
-export const ROCrate_Affiliation_decoder = object((get$) => {
-    const objectArg = get$.Required;
-    return objectArg.Field("name", string);
-});
-export function ROCrate_encoder(oa) {
-    let value;
-    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(oa), {
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            })], ["@type", {
-                Encode(helpers_1) {
-                    return helpers_1.encodeString("Person");
-                },
-            }], tryInclude("orcid", (value_2) => ({
-            Encode(helpers_2) {
-                return helpers_2.encodeString(value_2);
-            },
-        }), oa.ORCID), tryInclude("firstName", (value_4) => ({
-            Encode(helpers_3) {
-                return helpers_3.encodeString(value_4);
-            },
-        }), oa.FirstName), tryInclude("lastName", (value_6) => ({
-            Encode(helpers_4) {
-                return helpers_4.encodeString(value_6);
-            },
-        }), oa.LastName), tryInclude("midInitials", (value_8) => ({
-            Encode(helpers_5) {
-                return helpers_5.encodeString(value_8);
-            },
-        }), oa.MidInitials), tryInclude("email", (value_10) => ({
-            Encode(helpers_6) {
-                return helpers_6.encodeString(value_10);
-            },
-        }), oa.EMail), tryInclude("phone", (value_12) => ({
-            Encode(helpers_7) {
-                return helpers_7.encodeString(value_12);
-            },
-        }), oa.Phone), tryInclude("fax", (value_14) => ({
-            Encode(helpers_8) {
-                return helpers_8.encodeString(value_14);
-            },
-        }), oa.Fax), tryInclude("address", (value_16) => ({
-            Encode(helpers_9) {
-                return helpers_9.encodeString(value_16);
-            },
-        }), oa.Address), tryInclude("affiliation", ROCrate_Affiliation_encoder, oa.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_ROCrate_encoderDefinedTerm, oa.Roles), tryIncludeSeq("comments", ROCrate_encoderDisambiguatingDescription, oa.Comments), ["@context", context_jsonvalue_1]]));
-    return {
-        Encode(helpers_10) {
-            const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_10)], values_1);
-            return helpers_10.encodeObject(arg);
-        },
-    };
-}
-export const ROCrate_decoder = object((get$) => {
-    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
-    return new Person(unwrap((objectArg = get$.Optional, objectArg.Field("orcid", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("lastName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("firstName", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("email", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("phone", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("fax", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("address", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", ROCrate_Affiliation_decoder))), unwrap((arg_19 = resizeArray(OntologyAnnotation_ROCrate_decoderDefinedTerm), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", arg_19)))), unwrap((arg_21 = resizeArray(ROCrate_decoderDisambiguatingDescription), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21)))));
-});
-/**
- * This is only used for ro-crate creation. In ISA publication authors are only a string. ro-crate requires person object.
- * Therefore, we try to split the string by common separators and create a minimal person object for ro-crate.
- */
-export function ROCrate_encodeAuthorListString(authorList) {
-    const values_2 = map_2((name) => {
-        const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@type", {
-                    Encode(helpers) {
-                        return helpers.encodeString("Person");
-                    },
-                }], tryInclude("name", (value_1) => ({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_1);
-                },
-            }), name), ["@context", contextMinimal_jsonValue]]));
-        return {
-            Encode(helpers_2) {
-                const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_2)], values_1);
-                return helpers_2.encodeObject(arg);
-            },
-        };
-    }, map_2((s) => s.trim(), split(authorList, [(authorList.indexOf("\t") >= 0) ? "\t" : ((authorList.indexOf(";") >= 0) ? ";" : ",")], undefined, 0)));
-    return {
-        Encode(helpers_3) {
-            const arg_1 = map_2((v_3) => v_3.Encode(helpers_3), values_2);
-            return helpers_3.encodeArray(arg_1);
-        },
-    };
-}
-export const ROCrate_decodeAuthorListString = map_3((v) => join(", ", v), array_3(object((get$) => {
-    let objectArg;
-    return defaultArg((objectArg = get$.Optional, objectArg.Field("name", string)), "");
-})));
-export const ISAJson_allowedFields = ofArray(["@id", "firstName", "lastName", "midInitials", "email", "phone", "fax", "address", "affiliation", "roles", "comments", "@type", "@context"]);
-export function ISAJson_encoder(idMap, person) {
-    const f = (person_1) => {
-        const person_2 = Person_setCommentFromORCID(person_1);
-        const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            }), ROCrate_genID(person_2)), tryInclude("firstName", (value_2) => ({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_2);
-                },
-            }), person_2.FirstName), tryInclude("lastName", (value_4) => ({
-                Encode(helpers_2) {
-                    return helpers_2.encodeString(value_4);
-                },
-            }), person_2.LastName), tryInclude("midInitials", (value_6) => ({
-                Encode(helpers_3) {
-                    return helpers_3.encodeString(value_6);
-                },
-            }), person_2.MidInitials), tryInclude("email", (value_8) => ({
-                Encode(helpers_4) {
-                    return helpers_4.encodeString(value_8);
-                },
-            }), person_2.EMail), tryInclude("phone", (value_10) => ({
-                Encode(helpers_5) {
-                    return helpers_5.encodeString(value_10);
-                },
-            }), person_2.Phone), tryInclude("fax", (value_12) => ({
-                Encode(helpers_6) {
-                    return helpers_6.encodeString(value_12);
-                },
-            }), person_2.Fax), tryInclude("address", (value_14) => ({
-                Encode(helpers_7) {
-                    return helpers_7.encodeString(value_14);
-                },
-            }), person_2.Address), tryInclude("affiliation", (value_16) => ({
-                Encode(helpers_8) {
-                    return helpers_8.encodeString(value_16);
-                },
-            }), person_2.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_encoder, person_2.Roles), tryIncludeSeq("comments", encoder_1, person_2.Comments)]));
-        return {
-            Encode(helpers_9) {
-                const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
-                return helpers_9.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return encode(ROCrate_genID, f, person, value_18(idMap));
-    }
-    else {
-        return f(person);
-    }
-}
-export const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedFields, (get$) => {
-    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
-    return Person_setOrcidFromComments(new Person(undefined, unwrap((objectArg = get$.Optional, objectArg.Field("lastName", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("firstName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("midInitials", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("email", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("phone", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("fax", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("address", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("affiliation", string))), unwrap((arg_17 = resizeArray(OntologyAnnotation_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("roles", arg_17)))), unwrap((arg_19 = resizeArray(decoder_1), (objectArg_9 = get$.Optional, objectArg_9.Field("comments", arg_19))))));
-});

package/dist/ts/esm/ts/Json/Process/AssayMaterials.js

@@ -1,18 +0,0 @@
-import { getMaterials, getSamples } from "../../Core/Process/ProcessSequence.js";
-import { ofArray, choose } from "@fable-org/fable-library-js/List.js";
-import { map } from "@fable-org/fable-library-js/Option.js";
-import { tryIncludeList } from "../Encode.js";
-import { ISAJson_encoder } from "./Sample.js";
-import { ISAJson_encoder as ISAJson_encoder_1 } from "./Material.js";
-import { map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-export function encoder(idMap, ps) {
-    const samples = getSamples(ps);
-    const materials = getMaterials(ps);
-    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryIncludeList("samples", (oa) => ISAJson_encoder(idMap, oa), samples), tryIncludeList("otherMaterials", (c) => ISAJson_encoder_1(idMap, c), materials)]));
-    return {
-        Encode(helpers) {
-            const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers)], values_1);
-            return helpers.encodeObject(arg);
-        },
-    };
-}

package/dist/ts/esm/ts/Json/Process/Component.js

@@ -1,42 +0,0 @@
-import { genID, decoder, encoder } from "../PropertyValue.js";
-import { Component_decomposeName_Z721C83C5, Component__get_ComponentName, Component_createAsPV, Component } from "../../Core/Process/Component.js";
-import { value as value_2, map } from "@fable-org/fable-library-js/Option.js";
-import { ofArray, choose } from "@fable-org/fable-library-js/List.js";
-import { tryInclude } from "../Encode.js";
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
-import { map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-import { object } from "../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
-import { Decode_uri } from "../Decode.js";
-export const ROCrate_encoder = encoder;
-export const ROCrate_decoder = decoder(Component_createAsPV);
-export function ISAJson_genID(c) {
-    return genID(c);
-}
-export function ISAJson_encoder(idMap, c) {
-    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("componentName", (value) => ({
-            Encode(helpers) {
-                return helpers.encodeString(value);
-            },
-        }), Component__get_ComponentName(c)), tryInclude("componentType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), c.ComponentType)]));
-    return {
-        Encode(helpers_1) {
-            const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
-            return helpers_1.encodeObject(arg);
-        },
-    };
-}
-export const ISAJson_decoder = object((get$) => {
-    let objectArg_1;
-    let name;
-    const objectArg = get$.Optional;
-    name = objectArg.Field("componentName", Decode_uri);
-    let patternInput_1;
-    if (name == null) {
-        patternInput_1 = [undefined, undefined];
-    }
-    else {
-        const patternInput = Component_decomposeName_Z721C83C5(value_2(name));
-        patternInput_1 = [patternInput[0], patternInput[1]];
-    }
-    return new Component(patternInput_1[0], patternInput_1[1], (objectArg_1 = get$.Optional, objectArg_1.Field("componentType", OntologyAnnotation_ISAJson_decoder)));
-});

package/dist/ts/esm/ts/Json/Process/Factor.js

@@ -1,53 +0,0 @@
-import { defaultArg, map, value as value_7 } from "@fable-org/fable-library-js/Option.js";
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from "../OntologyAnnotation.js";
-import { Factor } from "../../Core/Process/Factor.js";
-import { ofArray, choose } from "@fable-org/fable-library-js/List.js";
-import { tryIncludeSeq, tryInclude } from "../Encode.js";
-import { ISAJson_decoder, ISAJson_encoder } from "../Comment.js";
-import { map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-import { encode } from "../IDTable.js";
-import { resizeArray, string, object } from "../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
-export function genID(f) {
-    const matchValue = f.Name;
-    if (matchValue == null) {
-        const matchValue_1 = f.FactorType;
-        if (matchValue_1 == null) {
-            return "#EmptyFactor";
-        }
-        else {
-            return `#Factor/${OntologyAnnotation_ROCrate_genID(value_7(matchValue_1))}`;
-        }
-    }
-    else {
-        return `#Factor/${value_7(matchValue)}`;
-    }
-}
-export function encoder(idMap, value) {
-    const f_1 = (value_1) => {
-        const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value_2) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value_2);
-                },
-            }), genID(value_1)), tryInclude("factorName", (value_4) => ({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_4);
-                },
-            }), value_1.Name), tryInclude("factorType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.FactorType), tryIncludeSeq("comments", (comment) => ISAJson_encoder(idMap, comment), defaultArg(value_1.Comments, []))]));
-        return {
-            Encode(helpers_2) {
-                const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_2)], values_1);
-                return helpers_2.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return encode(genID, f_1, value, value_7(idMap));
-    }
-    else {
-        return f_1(value);
-    }
-}
-export const decoder = object((get$) => {
-    let objectArg, objectArg_1, arg_5, objectArg_2;
-    return new Factor((objectArg = get$.Optional, objectArg.Field("factorName", string)), (objectArg_1 = get$.Optional, objectArg_1.Field("factorType", OntologyAnnotation_ISAJson_decoder)), (arg_5 = resizeArray(ISAJson_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("comments", arg_5))));
-});

package/dist/ts/esm/ts/Json/Process/FactorValue.js

@@ -1,42 +0,0 @@
-import { genID, decoder, encoder } from "../PropertyValue.js";
-import { FactorValue_createAsPV, FactorValue } from "../../Core/Process/FactorValue.js";
-import { value as value_4, map } from "@fable-org/fable-library-js/Option.js";
-import { ofArray, choose } from "@fable-org/fable-library-js/List.js";
-import { tryInclude } from "../Encode.js";
-import { decoder as decoder_1, encoder as encoder_1 } from "./Factor.js";
-import { decoder as decoder_2, encoder as encoder_2 } from "./Value.js";
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
-import { map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-import { encode } from "../IDTable.js";
-import { object } from "../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
-import { Decode_uri } from "../Decode.js";
-export const ROCrate_encoder = encoder;
-export const ROCrate_decoder = decoder(FactorValue_createAsPV);
-export function ISAJson_genID(fv) {
-    return genID(fv);
-}
-export function ISAJson_encoder(idMap, fv) {
-    const f = (fv_1) => {
-        const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            }), ISAJson_genID(fv_1)), tryInclude("category", (value_2) => encoder_1(idMap, value_2), fv_1.Category), tryInclude("value", (value_3) => encoder_2(idMap, value_3), fv_1.Value), tryInclude("unit", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), fv_1.Unit)]));
-        return {
-            Encode(helpers_1) {
-                const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
-                return helpers_1.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return encode(ISAJson_genID, f, fv, value_4(idMap));
-    }
-    else {
-        return f(fv);
-    }
-}
-export const ISAJson_decoder = object((get$) => {
-    let objectArg, objectArg_1, objectArg_2, objectArg_3;
-    return new FactorValue((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("category", decoder_1)), (objectArg_2 = get$.Optional, objectArg_2.Field("value", decoder_2)), (objectArg_3 = get$.Optional, objectArg_3.Field("unit", OntologyAnnotation_ISAJson_decoder)));
-});

package/dist/ts/esm/ts/Json/Process/Material.js

@@ -1,114 +0,0 @@
-import { map, value as value_6 } from "@fable-org/fable-library-js/Option.js";
-import { replace } from "@fable-org/fable-library-js/String.js";
-import { Material } from "../../Core/Process/Material.js";
-import { ofArray, singleton, choose } from "@fable-org/fable-library-js/List.js";
-import { list as list_1 } from "../../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js";
-import { tryIncludeListOpt, tryInclude } from "../Encode.js";
-import { ISAJson_decoder as ISAJson_decoder_1, ISAJson_encoder as ISAJson_encoder_1, ROCrate_decoder as ROCrate_decoder_1, ROCrate_encoder as ROCrate_encoder_1 } from "./MaterialType.js";
-import { ISAJson_decoder as ISAJson_decoder_2, ISAJson_encoder as ISAJson_encoder_2, ROCrate_decoder as ROCrate_decoder_2, ROCrate_encoder as ROCrate_encoder_2 } from "./MaterialAttributeValue.js";
-import { context_jsonvalue } from "../context/rocrate/isa_material_context.js";
-import { map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-import { list as list_2, string, unit, object } from "../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
-import { Decode_objectNoAdditionalProperties, Decode_uri } from "../Decode.js";
-import { encode } from "../IDTable.js";
-export function ROCrate_genID(m) {
-    const matchValue = m.ID;
-    if (matchValue == null) {
-        const matchValue_1 = m.Name;
-        if (matchValue_1 == null) {
-            return "#EmptyMaterial";
-        }
-        else {
-            return "#Material_" + replace(value_6(matchValue_1), " ", "_");
-        }
-    }
-    else {
-        return value_6(matchValue);
-    }
-}
-export function ROCrate_encoder(oa) {
-    let value;
-    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(oa), {
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            })], ["@type", list_1(singleton({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString("Material");
-                },
-            }))], ["additionalType", {
-                Encode(helpers_2) {
-                    return helpers_2.encodeString("Material");
-                },
-            }], tryInclude("name", (value_3) => ({
-            Encode(helpers_3) {
-                return helpers_3.encodeString(value_3);
-            },
-        }), oa.Name), tryInclude("type", ROCrate_encoder_1, oa.MaterialType), tryIncludeListOpt("characteristics", ROCrate_encoder_2, oa.Characteristics), tryIncludeListOpt("derivesFrom", ROCrate_encoder, oa.DerivesFrom), ["@context", context_jsonvalue]]));
-    return {
-        Encode(helpers_4) {
-            const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
-            return helpers_4.encodeObject(arg);
-        },
-    };
-}
-export const ROCrate_decoder = (() => {
-    const decode = () => object((get$) => {
-        let objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6;
-        let matchValue;
-        const objectArg = get$.Optional;
-        matchValue = objectArg.Field("additionalType", Decode_uri);
-        let matchResult;
-        if (matchValue == null) {
-            matchResult = 0;
-        }
-        else if (value_6(matchValue) === "Material") {
-            matchResult = 0;
-        }
-        else {
-            matchResult = 1;
-        }
-        switch (matchResult) {
-            case 1: {
-                const objectArg_1 = get$.Required;
-                objectArg_1.Field("FailBecauseNotSample", unit);
-                break;
-            }
-        }
-        return new Material((objectArg_2 = get$.Optional, objectArg_2.Field("@id", Decode_uri)), (objectArg_3 = get$.Optional, objectArg_3.Field("name", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("type", ROCrate_decoder_1)), (arg_11 = list_2(ROCrate_decoder_2), (objectArg_5 = get$.Optional, objectArg_5.Field("characteristics", arg_11))), (arg_13 = list_2(decode()), (objectArg_6 = get$.Optional, objectArg_6.Field("derivesFrom", arg_13))));
-    });
-    return decode();
-})();
-export function ISAJson_encoder(idMap, c) {
-    const f = (oa) => {
-        const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            }), ROCrate_genID(oa)), tryInclude("name", (value_2) => ({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_2);
-                },
-            }), oa.Name), tryInclude("type", ISAJson_encoder_1, oa.MaterialType), tryIncludeListOpt("characteristics", (oa_1) => ISAJson_encoder_2(idMap, oa_1), oa.Characteristics), tryIncludeListOpt("derivesFrom", (c_1) => ISAJson_encoder(idMap, c_1), oa.DerivesFrom)]));
-        return {
-            Encode(helpers_2) {
-                const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_2)], values_1);
-                return helpers_2.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return encode(ROCrate_genID, f, c, value_6(idMap));
-    }
-    else {
-        return f(c);
-    }
-}
-export const ISAJson_allowedFields = ofArray(["@id", "@type", "name", "type", "characteristics", "derivesFrom", "@context"]);
-export const ISAJson_decoder = (() => {
-    const decode = () => Decode_objectNoAdditionalProperties(ISAJson_allowedFields, (get$) => {
-        let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3, arg_9, objectArg_4;
-        return new Material((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("type", ISAJson_decoder_1)), (arg_7 = list_2(ISAJson_decoder_2), (objectArg_3 = get$.Optional, objectArg_3.Field("characteristics", arg_7))), (arg_9 = list_2(decode()), (objectArg_4 = get$.Optional, objectArg_4.Field("derivesFrom", arg_9))));
-    });
-    return decode();
-})();

package/dist/ts/esm/ts/Json/Process/MaterialAttribute.js

@@ -1,42 +0,0 @@
-import { map, value as value_4 } from "@fable-org/fable-library-js/Option.js";
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from "../OntologyAnnotation.js";
-import { MaterialAttribute } from "../../Core/Process/MaterialAttribute.js";
-import { ofArray, choose } from "@fable-org/fable-library-js/List.js";
-import { tryInclude } from "../Encode.js";
-import { map as map_1 } from "@fable-org/fable-library-js/Seq.js";
-import { encode } from "../IDTable.js";
-import { object } from "../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
-export function genID(m) {
-    const matchValue = m.CharacteristicType;
-    if (matchValue == null) {
-        return "#EmptyFactor";
-    }
-    else {
-        return `#MaterialAttribute/${OntologyAnnotation_ROCrate_genID(value_4(matchValue))}`;
-    }
-}
-export function encoder(idMap, value) {
-    const f = (value_1) => {
-        const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value_2) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value_2);
-                },
-            }), genID(value_1)), tryInclude("characteristicType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.CharacteristicType)]));
-        return {
-            Encode(helpers_1) {
-                const arg = map_1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
-                return helpers_1.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return encode(genID, f, value, value_4(idMap));
-    }
-    else {
-        return f(value);
-    }
-}
-export const decoder = object((get$) => {
-    let objectArg;
-    return new MaterialAttribute(undefined, (objectArg = get$.Optional, objectArg.Field("characteristicType", OntologyAnnotation_ISAJson_decoder)));
-});