@nfdi4plants/arctrl 2.2.3 → 2.3.0

package/ContractIO/FileSystemHelper.js

@@ -0,0 +1,130 @@
+import { getSubFiles, getSubDirectories, writeFileBinary, writeFileText, deleteDirectory, deleteFile, moveDirectory, moveFile, readFileBinary, readFileText, fileExists as fileExists_1, ensureDirectoryOfFile, ensureDirectory, createDirectory, directoryExists as directoryExists_1 } from "../FileSystem.js";
+import { FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5 } from "../fable_modules/FsSpreadsheet.Js.6.3.1/FsExtensions.fs.js";
+import { substring, replace, trim as trim_1 } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { PromiseBuilder__Delay_62FBFDE1, PromiseBuilder__Run_212F1D4B } from "../fable_modules/Fable.Promise.3.2.0/Promise.fs.js";
+import { promise } from "../fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js";
+import { map } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { toArray, append, concat, map as map_1, empty, isEmpty } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { all } from "../CrossAsync.js";
+
+export const directoryExistsAsync = directoryExists_1;
+
+export const createDirectoryAsync = createDirectory;
+
+export const ensureDirectoryAsync = ensureDirectory;
+
+export const ensureDirectoryOfFileAsync = ensureDirectoryOfFile;
+
+export const fileExistsAsync = fileExists_1;
+
+export const readFileTextAsync = readFileText;
+
+export const readFileBinaryAsync = readFileBinary;
+
+export function readFileXlsxAsync(path) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path);
+}
+
+export const moveFileAsync = moveFile;
+
+export const moveDirectoryAsync = moveDirectory;
+
+export const deleteFileAsync = deleteFile;
+
+export const deleteDirectoryAsync = deleteDirectory;
+
+export const writeFileTextAsync = writeFileText;
+
+export const writeFileBinaryAsync = writeFileBinary;
+
+export function writeFileXlsxAsync(path, wb) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, wb);
+}
+
+export function trim(path) {
+    if (path.startsWith("./")) {
+        return trim_1(replace(path, "./", ""), "/");
+    }
+    else {
+        return trim_1(path, "/");
+    }
+}
+
+/**
+ * Return the absolute path relative to the directoryPath
+ */
+export function makeRelative(directoryPath, path) {
+    if (((directoryPath === ".") ? true : (directoryPath === "/")) ? true : (directoryPath === "")) {
+        return path;
+    }
+    else {
+        const directoryPath_1 = trim(directoryPath);
+        const path_1 = trim(path);
+        if (path_1.startsWith(directoryPath_1)) {
+            return substring(path_1, directoryPath_1.length);
+        }
+        else {
+            return path_1;
+        }
+    }
+}
+
+export function standardizeSlashes(path) {
+    return replace(path, "\\", "/");
+}
+
+export function getSubDirectoriesAsync(path) {
+    const f = getSubDirectories;
+    return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (f(path).then((_arg) => (Promise.resolve(map(standardizeSlashes, _arg)))))));
+}
+
+export function getSubFilesAsync(path) {
+    const f = getSubFiles;
+    return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (f(path).then((_arg) => (Promise.resolve(map(standardizeSlashes, _arg)))))));
+}
+
+export function getAllFilePathsAsync(directoryPath) {
+    const directoryPath_1 = standardizeSlashes(directoryPath);
+    return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const allFiles = (dirs) => PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (isEmpty(dirs) ? (Promise.resolve(empty())) : (all(map_1(getSubFilesAsync, dirs)).then((_arg) => {
+            const subFiles_1 = concat(_arg);
+            return all(map_1(getSubDirectoriesAsync, dirs)).then((_arg_1) => (all(map_1(allFiles, _arg_1)).then((_arg_2) => {
+                const subDirContents_1 = concat(_arg_2);
+                return Promise.resolve(append(subDirContents_1, subFiles_1));
+            })));
+        })))));
+        return allFiles([directoryPath_1]).then((_arg_3) => {
+            const allFilesRelative = map((arg_2) => standardizeSlashes(makeRelative(directoryPath_1, arg_2)), toArray(_arg_3));
+            return Promise.resolve(allFilesRelative);
+        });
+    }));
+}
+
+export function renameFileOrDirectoryAsync(oldPath, newPath) {
+    return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (fileExistsAsync(oldPath).then((_arg) => (directoryExistsAsync(oldPath).then((_arg_1) => {
+        if (_arg) {
+            return moveFileAsync(oldPath, newPath);
+        }
+        else if (_arg_1) {
+            return moveDirectoryAsync(oldPath, newPath);
+        }
+        else {
+            return Promise.resolve();
+        }
+    }))))));
+}
+
+export function deleteFileOrDirectoryAsync(path) {
+    return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (fileExistsAsync(path).then((_arg) => (directoryExistsAsync(path).then((_arg_1) => {
+        if (_arg) {
+            return deleteFileAsync(path);
+        }
+        else if (_arg_1) {
+            return deleteDirectoryAsync(path);
+        }
+        else {
+            return Promise.resolve();
+        }
+    }))))));
+}
+

package/Core/ArcTypes.js

@@ -1,17 +1,17 @@
-import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
+import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { ResizeArray_choose, ResizeArray_filter, ResizeArray_map } from "./Helper/Collections.js";
 import { DataMap__Copy } from "./DataMap.js";
-import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.22.0/Array.js";
-import { printf, toText } from "../fable_modules/fable-library-js.4.22.0/String.js";
-import { rangeDouble } from "../fable_modules/fable-library-js.4.22.0/Range.js";
+import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { printf, toText } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { rangeDouble } from "../fable_modules/fable-library-js.4.24.0/Range.js";
 import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
 import { checkValidCharacters } from "./Helper/Identifier.js";
 import { ArcTablesAux_applyIOMap, ArcTablesAux_getIOMap, ArcTables_$reflection, ArcTables } from "./Table/ArcTables.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { Array_distinct } from "../fable_modules/fable-library-js.4.22.0/Seq2.js";
-import { FSharpRef } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { Array_distinct } from "../fable_modules/fable-library-js.4.24.0/Seq2.js";
+import { FSharpRef } from "../fable_modules/fable-library-js.4.24.0/Types.js";
 
 export class ArcAssay extends ArcTables {
     constructor(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {

package/Core/Comment.js

@@ -1,13 +1,13 @@
-import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { equals } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
+import { equals } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.22.0/System.Text.js";
-import { replace, printf, toText, join } from "../fable_modules/fable-library-js.4.22.0/String.js";
-import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.22.0/List.js";
-import { Record, toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { create, match } from "../fable_modules/fable-library-js.4.22.0/RegExp.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.24.0/System.Text.js";
+import { replace, printf, toText, join } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.24.0/List.js";
+import { Record, toString } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { create, match } from "../fable_modules/fable-library-js.4.24.0/RegExp.js";
 import { Pattern_handleGroupPatterns } from "./Helper/Regex.js";
-import { record_type, string_type, int32_type, class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { record_type, string_type, int32_type, class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class Comment$ {
     constructor(name, value) {

package/Core/CommentList.js

@@ -1,8 +1,8 @@
-import { exists, tryPick } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { value } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { ofSeq } from "../fable_modules/fable-library-js.4.22.0/Map.js";
+import { exists, tryPick } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { value } from "../fable_modules/fable-library-js.4.24.0/Option.js";
+import { ofSeq } from "../fable_modules/fable-library-js.4.24.0/Map.js";
 import { ResizeArray_filter, ResizeArray_appendSingleton, ResizeArray_map, ResizeArray_choose } from "./Helper/Collections.js";
-import { equals, comparePrimitives } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { equals, comparePrimitives } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 
 /**
  * If a comment with the given key exists in the [], return its value, else return None

package/Core/Conversion.js

@@ -1,7 +1,7 @@
-import { remove, toFail, printf, toText } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { remove, toFail, printf, toText } from "../fable_modules/fable-library-js.4.24.0/String.js";
 import { Comment$ } from "./Comment.js";
-import { zip as zip_1, fold, empty as empty_1, singleton as singleton_1, append, delay, map as map_1, filter, toList, indexed, tryPick, choose } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { unwrap, value as value_10, map, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { zip as zip_1, fold, empty as empty_1, singleton as singleton_1, append, delay, map as map_1, filter, toList, indexed, tryPick, choose } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { unwrap, value as value_10, map, defaultArg } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Option_fromValueWithDefault, ResizeArray_filter } from "./Helper/Collections.js";
 import { Value as Value_2 } from "./Value.js";
 import { Component_create_Z2F0B38C7 } from "./Process/Component.js";
@@ -9,29 +9,29 @@ import { ProtocolParameter } from "./Process/ProtocolParameter.js";
 import { ProcessParameterValue } from "./Process/ProcessParameterValue.js";
 import { FactorValue_create_30BDC49 } from "./Process/FactorValue.js";
 import { Factor } from "./Process/Factor.js";
-import { toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { toString } from "../fable_modules/fable-library-js.4.24.0/Types.js";
 import { MaterialAttributeValue_create_ZE1D108D } from "./Process/MaterialAttributeValue.js";
 import { MaterialAttribute_create_A220A8A } from "./Process/MaterialAttribute.js";
 import { ProcessInput_getCharacteristicValues_5B3D5BA9, ProcessInput__isMaterial, ProcessInput__isData, ProcessInput_setCharacteristicValues, ProcessInput__get_Name, ProcessInput__isSource, ProcessInput__isSample, ProcessInput, ProcessInput_createSource_Z5E00540E, ProcessInput_createRawData_Z721C83C5, ProcessInput_createMaterial_4452CB4C, ProcessInput_createSample_Z598187B7 } from "./Process/ProcessInput.js";
 import { ProcessOutput_getFactorValues_Z42C11600, ProcessOutput__isMaterial, ProcessOutput__isData, ProcessOutput_setFactorValues, ProcessOutput__get_Name, ProcessOutput__isSample, ProcessOutput, ProcessOutput_createRawData_Z721C83C5, ProcessOutput_createMaterial_4452CB4C, ProcessOutput_createSample_Z598187B7 } from "./Process/ProcessOutput.js";
 import { CompositeCell } from "./Table/CompositeCell.js";
 import { OntologyAnnotation } from "./OntologyAnnotation.js";
-import { safeHash, equals, disposeSafe, getEnumerator, comparePrimitives, arrayHash, equalArrays, stringHash, int32ToString } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { safeHash, equals, disposeSafe, getEnumerator, comparePrimitives, arrayHash, equalArrays, stringHash, int32ToString } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { IOType, CompositeHeader } from "./Table/CompositeHeader.js";
 import { ActivePatterns_$007CRegex$007C_$007C } from "./Helper/Regex.js";
 import { ARCtrl_Process_Component__Component_TryGetColumnIndex, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex, tryGetFactorColumnIndex, tryGetCharacteristicColumnIndex, tryGetComponentIndex, tryGetParameterColumnIndex, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4 } from "./Process/ColumnIndex.js";
-import { getItemFromDict } from "../fable_modules/fable-library-js.4.22.0/MapUtil.js";
-import { initialize, zip, append as append_1, sortBy, head, tryPick as tryPick_1, collect, mapIndexed, item, map as map_2, empty, length, ofArray, isEmpty, singleton, choose as choose_1 } from "../fable_modules/fable-library-js.4.22.0/List.js";
+import { getItemFromDict } from "../fable_modules/fable-library-js.4.24.0/MapUtil.js";
+import { initialize, zip, append as append_1, sortBy, head, tryPick as tryPick_1, collect, mapIndexed, item, map as map_2, empty, length, ofArray, isEmpty, singleton, choose as choose_1 } from "../fable_modules/fable-library-js.4.24.0/List.js";
 import { Source_create_Z5CA08497 } from "./Process/Source.js";
 import { Sample_create_62424AD2 } from "./Process/Sample.js";
 import { Process_create_Z7C1F7FA9, Process_decomposeName_Z721C83C5, Process_make, Process_composeName } from "./Process/Process.js";
 import { Protocol_create_Z414665E7, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType, Protocol_make } from "./Process/Protocol.js";
-import { List_distinct, List_groupBy } from "../fable_modules/fable-library-js.4.22.0/Seq2.js";
+import { List_distinct, List_groupBy } from "../fable_modules/fable-library-js.4.24.0/Seq2.js";
 import { createMissingIdentifier } from "./Helper/Identifier.js";
 import { boxHashSeq, boxHashOption } from "./Helper/HashCodes.js";
 import { ArcTable } from "./Table/ArcTable.js";
-import { singleton as singleton_2 } from "../fable_modules/fable-library-js.4.22.0/Array.js";
-import { rangeDouble } from "../fable_modules/fable-library-js.4.22.0/Range.js";
+import { singleton as singleton_2 } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { rangeDouble } from "../fable_modules/fable-library-js.4.24.0/Range.js";
 import { Unchecked_alignByHeaders } from "./Table/ArcTableAux.js";
 import { ArcTables } from "./Table/ArcTables.js";
 
@@ -426,7 +426,7 @@ export function JsonTypes_composeTechnologyPlatform(tp) {
  * This function allows us, to parse them as an ontology term.
  */
 export function JsonTypes_decomposeTechnologyPlatform(name) {
-    const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("(?<value>[^\\(]+) \\((?<ontology>[^(]*:[^)]*)\\)", name);
+    const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("^(?<value>.+) \\((?<ontology>[^(]*:[^)]*)\\)$", name);
     if (activePatternResult != null) {
         const r = activePatternResult;
         let oa;

package/Core/Data.js

@@ -1,11 +1,11 @@
-import { printf, toText } from "../fable_modules/fable-library-js.4.22.0/String.js";
-import { item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
-import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { printf, toText } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { item } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { ResizeArray_map } from "./Helper/Collections.js";
 import { hash, boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { toString } from "../fable_modules/fable-library-js.4.24.0/Types.js";
 import { DataFile__get_AsString } from "./DataFile.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export function DataAux_nameFromPathAndSelector(path, selector) {
     return toText(printf("%s#%s"))(path)(selector);

package/Core/DataContext.js

@@ -1,8 +1,8 @@
 import { hash, boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { unwrap, map } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { unwrap, map } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Value as Value_1 } from "./Value.js";
 import { Data_$reflection, Data } from "./Data.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { OntologyAnnotation } from "./OntologyAnnotation.js";
 
 export class DataContext extends Data {

package/Core/DataFile.js

@@ -1,5 +1,5 @@
-import { Union } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { union_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { Union } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { union_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class DataFile extends Union {
     constructor(tag, fields) {

package/Core/DataMap.js

@@ -1,10 +1,10 @@
 import { CompositeHeader, IOType } from "./Table/CompositeHeader.js";
 import { OntologyAnnotation } from "./OntologyAnnotation.js";
-import { ofArray } from "../fable_modules/fable-library-js.4.22.0/List.js";
-import { iterateIndexed, map } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { ofArray } from "../fable_modules/fable-library-js.4.24.0/List.js";
+import { iterateIndexed, map } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
 import { CompositeCell } from "./Table/CompositeCell.js";
 import { boxHashSeq, hash } from "./Helper/HashCodes.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { DataContext__Copy, DataContext__set_Description_6DFDD678, DataContext__get_Description, DataContext__set_ObjectType_279AAFF2, DataContext__get_ObjectType, DataContext__set_Unit_279AAFF2, DataContext__get_Unit, DataContext__set_Explication_279AAFF2, DataContext__get_Explication } from "./DataContext.js";
 
 export const DataMapAux_dataHeader = new CompositeHeader(11, [new IOType(2, [])]);

package/Core/Helper/Collections.js

@@ -1,11 +1,11 @@
-import { disposeSafe, getEnumerator, defaultOf, structuralHash, equals } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
-import { value as value_1, some } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
-import { empty, singleton, append, head, tail, isEmpty } from "../../fable_modules/fable-library-js.4.22.0/List.js";
-import { Dictionary } from "../../fable_modules/fable-library-js.4.22.0/MutableMap.js";
-import { iterate } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { tryGetValue, addToDict } from "../../fable_modules/fable-library-js.4.22.0/MapUtil.js";
-import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { contains } from "../../fable_modules/fable-library-js.4.22.0/Array.js";
+import { disposeSafe, getEnumerator, defaultOf, structuralHash, equals } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
+import { value as value_1, some } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
+import { empty, singleton, append, head, tail, isEmpty } from "../../fable_modules/fable-library-js.4.24.0/List.js";
+import { Dictionary } from "../../fable_modules/fable-library-js.4.24.0/MutableMap.js";
+import { iterate } from "../../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { tryGetValue, addToDict } from "../../fable_modules/fable-library-js.4.24.0/MapUtil.js";
+import { FSharpRef } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { contains } from "../../fable_modules/fable-library-js.4.24.0/Array.js";
 
 /**
  * If the value matches the default, a None is returned, else a Some is returned

package/Core/Helper/HashCodes.js

@@ -1,8 +1,8 @@
-import { second, minute, hour, day, month, year } from "../../fable_modules/fable-library-js.4.22.0/Date.js";
-import { numberHash, identityHash } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
-import { value as value_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
-import { fold } from "../../fable_modules/fable-library-js.4.22.0/Array.js";
-import { fold as fold_1 } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { second, minute, hour, day, month, year } from "../../fable_modules/fable-library-js.4.24.0/Date.js";
+import { numberHash, identityHash } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
+import { value as value_1 } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
+import { fold } from "../../fable_modules/fable-library-js.4.24.0/Array.js";
+import { fold as fold_1 } from "../../fable_modules/fable-library-js.4.24.0/Seq.js";
 
 export function mergeHashes(hash1, hash2) {
     return ((-1640531527 + hash2) + (hash1 << 6)) + (hash1 >> 2);

package/Core/Helper/Identifier.js

@@ -1,5 +1,5 @@
 import { ActivePatterns_$007CRegex$007C_$007C } from "./Regex.js";
-import { newGuid } from "../../fable_modules/fable-library-js.4.22.0/Guid.js";
+import { newGuid } from "../../fable_modules/fable-library-js.4.24.0/Guid.js";
 import { combineMany } from "../../FileSystem/Path.js";
 
 export function tryCheckValidCharacters(identifier) {

package/Core/Helper/Regex.js

@@ -1,6 +1,6 @@
-import { create, match } from "../../fable_modules/fable-library-js.4.22.0/RegExp.js";
-import { parse } from "../../fable_modules/fable-library-js.4.22.0/Int32.js";
-import { map } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { create, match } from "../../fable_modules/fable-library-js.4.24.0/RegExp.js";
+import { parse } from "../../fable_modules/fable-library-js.4.24.0/Int32.js";
+import { map } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
 
 export function Pattern_handleGroupPatterns(pattern) {
     return pattern;

package/Core/Helper/SemVer.js

@@ -1,10 +1,10 @@
-import { toString, Record } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { record_type, option_type, string_type, int32_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { toString, Record } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { record_type, option_type, string_type, int32_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { ActivePatterns_$007CRegex$007C_$007C } from "./Regex.js";
-import { parse } from "../../fable_modules/fable-library-js.4.22.0/Int32.js";
-import { value as value_3, unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../../fable_modules/fable-library-js.4.22.0/System.Text.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.22.0/String.js";
+import { parse } from "../../fable_modules/fable-library-js.4.24.0/Int32.js";
+import { value as value_3, unwrap } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../../fable_modules/fable-library-js.4.24.0/System.Text.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.24.0/String.js";
 
 export const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
 

package/Core/OntologyAnnotation.js

@@ -1,14 +1,14 @@
-import { value as value_4, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { value as value_4, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Pattern_TermAnnotationShortPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseTermAnnotation } from "./Helper/Regex.js";
 import { createOAUri } from "./Helper/Url.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.22.0/System.Text.js";
-import { printf, toText, join } from "../fable_modules/fable-library-js.4.22.0/String.js";
-import { toArray, empty, singleton, append, delay, toList } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.24.0/System.Text.js";
+import { printf, toText, join } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { toArray, empty, singleton, append, delay, toList } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { toString } from "../fable_modules/fable-library-js.4.24.0/Types.js";
 import { hash as hash_1, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
 import { ResizeArray_map } from "./Helper/Collections.js";
-import { safeHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { safeHash } from "../fable_modules/fable-library-js.4.24.0/Util.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class OntologyAnnotation {
     constructor(name, tsr, tan, comments) {

package/Core/OntologySourceReference.js

@@ -1,8 +1,8 @@
-import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { ResizeArray_map } from "./Helper/Collections.js";
 import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { safeHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { safeHash } from "../fable_modules/fable-library-js.4.24.0/Util.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class OntologySourceReference {
     constructor(description, file, name, version, comments) {

package/Core/Person.js

@@ -1,14 +1,14 @@
-import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { tryFind } from "../fable_modules/fable-library-js.4.22.0/Array.js";
-import { equals } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { ofArray, choose, map, singleton, append } from "../fable_modules/fable-library-js.4.22.0/List.js";
+import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
+import { tryFind } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { equals } from "../fable_modules/fable-library-js.4.24.0/Util.js";
+import { ofArray, choose, map, singleton, append } from "../fable_modules/fable-library-js.4.24.0/List.js";
 import { ResizeArray_map } from "./Helper/Collections.js";
 import { hash, boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.22.0/System.Text.js";
-import { printf, toText, join } from "../fable_modules/fable-library-js.4.22.0/String.js";
-import { length } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.24.0/System.Text.js";
+import { printf, toText, join } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { length } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { toString } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class Person {
     constructor(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles, comments) {

package/Core/Process/ColumnIndex.js

@@ -1,10 +1,10 @@
-import { tryParse } from "../../fable_modules/fable-library-js.4.22.0/Int32.js";
-import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
+import { tryParse } from "../../fable_modules/fable-library-js.4.24.0/Int32.js";
+import { FSharpRef } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
 import { Comment$ } from "../Comment.js";
-import { equals, int32ToString } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
+import { equals, int32ToString } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
 import { tryItem } from "../CommentList.js";
-import { findIndex } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { value, bind } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { findIndex } from "../../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { value, bind } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Factor } from "./Factor.js";
 import { MaterialAttribute_fromString_5980DC03 } from "./MaterialAttribute.js";
 import { ProtocolParameter } from "./ProtocolParameter.js";

package/Core/Process/Component.js

@@ -1,11 +1,11 @@
-import { Record } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
+import { Record } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
 import { Value, Value_$reflection } from "../Value.js";
-import { record_type, option_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { record_type, option_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "../OntologyAnnotation.js";
-import { defaultArg, unwrap, map } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { defaultArg, unwrap, map } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
 import { ActivePatterns_$007CRegex$007C_$007C } from "../Helper/Regex.js";
 import { Option_fromValueWithDefault } from "../Helper/Collections.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.22.0/String.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.24.0/String.js";
 
 export class Component extends Record {
     constructor(ComponentValue, ComponentUnit, ComponentType) {

package/Core/Process/Factor.js

@@ -1,10 +1,10 @@
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "../OntologyAnnotation.js";
-import { map, defaultArg, unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { map, defaultArg, unwrap } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
 import { ResizeArray_map, Option_fromValueWithDefault } from "../Helper/Collections.js";
-import { filter, singleton, append, exists, tryFind } from "../../fable_modules/fable-library-js.4.22.0/List.js";
-import { equals } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
-import { Record, toString } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { record_type, array_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { filter, singleton, append, exists, tryFind } from "../../fable_modules/fable-library-js.4.24.0/List.js";
+import { equals } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { record_type, array_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { Comment$_$reflection } from "../Comment.js";
 
 export class Factor extends Record {

package/Core/Process/FactorValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { unwrap, defaultArg, bind, map } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
-import { record_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { unwrap, defaultArg, bind, map } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
+import { record_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { Factor, Factor_$reflection } from "./Factor.js";
 import { Value_$reflection } from "../Value.js";
 import { OntologyAnnotation_$reflection } from "../OntologyAnnotation.js";
-import { int32ToString } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.22.0/String.js";
+import { int32ToString } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.24.0/String.js";
 
 export class FactorValue extends Record {
     constructor(ID, Category, Value, Unit) {

package/Core/Process/Material.js

@@ -1,9 +1,9 @@
-import { Record, toString } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { choose, empty, length } from "../../fable_modules/fable-library-js.4.22.0/List.js";
-import { defaultArg } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.22.0/String.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { choose, empty, length } from "../../fable_modules/fable-library-js.4.24.0/List.js";
+import { defaultArg } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.24.0/String.js";
 import { MaterialType_$reflection, MaterialType__get_AsString } from "./MaterialType.js";
-import { record_type, list_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { record_type, list_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Material extends Record {

package/Core/Process/MaterialAttribute.js

@@ -1,7 +1,7 @@
-import { Record, toString } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { record_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { record_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "../OntologyAnnotation.js";
-import { bind, map, defaultArg, unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { bind, map, defaultArg, unwrap } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Option_fromValueWithDefault } from "../Helper/Collections.js";
 
 export class MaterialAttribute extends Record {

package/Core/Process/MaterialAttributeValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { unwrap, defaultArg, bind, map } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { unwrap, defaultArg, bind, map } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
 import { MaterialAttribute__SetCategory_ZDED3A0F, MaterialAttribute_create_A220A8A, MaterialAttribute__MapCategory_658CFBF6, MaterialAttribute__get_TryNameText, MaterialAttribute_$reflection, MaterialAttribute__get_NameText } from "./MaterialAttribute.js";
-import { record_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { record_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 import { Value_$reflection } from "../Value.js";
 import { OntologyAnnotation_$reflection } from "../OntologyAnnotation.js";
-import { int32ToString } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.22.0/String.js";
+import { int32ToString } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.24.0/String.js";
 
 export class MaterialAttributeValue extends Record {
     constructor(ID, Category, Value, Unit) {

package/Core/Process/MaterialType.js

@@ -1,5 +1,5 @@
-import { Union } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { union_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { Union } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
+import { union_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class MaterialType extends Union {
     constructor(tag, fields) {