@nfdi4plants/arctrl 2.2.3 → 2.3.0

package/ARC.js

@@ -1,20 +1,24 @@
-import { append as append_1, contains as contains_1, concat, fold, map, exactlyOne, tryPick, choose } from "./fable_modules/fable-library-js.4.22.0/Array.js";
+import { append as append_1, contains as contains_1, concat, fold, map, exactlyOne, tryPick, choose } from "./fable_modules/fable-library-js.4.24.0/Array.js";
 import { ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F } from "./Contract/ArcAssay.js";
 import { ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static } from "./Contract/Datamap.js";
 import { ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F } from "./Contract/ArcStudy.js";
 import { ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F } from "./Contract/ArcInvestigation.js";
-import { collect, empty, iterate, find, tryFind, map as map_1, singleton, append, delay, toList, contains, toArray } from "./fable_modules/fable-library-js.4.22.0/Seq.js";
+import { toList, collect, empty, iterate, find, tryFind, map as map_1, singleton, append, delay, contains, toArray } from "./fable_modules/fable-library-js.4.24.0/Seq.js";
 import { FileSystemTree } from "./FileSystem/FileSystemTree.js";
 import { FileSystem } from "./FileSystem/FileSystem.js";
-import { bind, map as map_2, defaultArg, value as value_2, unwrap } from "./fable_modules/fable-library-js.4.22.0/Option.js";
-import { comparePrimitives, safeHash, stringHash } from "./fable_modules/fable-library-js.4.22.0/Util.js";
+import { bind, map as map_2, defaultArg, value as value_2, unwrap } from "./fable_modules/fable-library-js.4.24.0/Option.js";
+import { fullFillContractBatchAsync } from "./ContractIO/ContractIO.js";
+import { PromiseBuilder__Delay_62FBFDE1, PromiseBuilder__Run_212F1D4B } from "./fable_modules/Fable.Promise.3.2.0/Promise.fs.js";
+import { promise } from "./fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js";
+import { getAllFilePathsAsync } from "./ContractIO/FileSystemHelper.js";
+import { FSharpResult$2 } from "./fable_modules/fable-library-js.4.24.0/Result.js";
+import { comparePrimitives, safeHash, stringHash } from "./fable_modules/fable-library-js.4.24.0/Util.js";
 import { getStudyFolderPath, getAssayFolderPath } from "./FileSystem/Path.js";
-import { printf, toText, replace } from "./fable_modules/fable-library-js.4.22.0/String.js";
+import { printf, toText, replace } from "./fable_modules/fable-library-js.4.24.0/String.js";
 import { Contract } from "./Contract/Contract.js";
-import { ofArray } from "./fable_modules/fable-library-js.4.22.0/List.js";
 import { tryISAReadContractFromPath } from "./Contract/ARC.js";
 import { ArcTables } from "./Core/Table/ArcTables.js";
-import { addToDict } from "./fable_modules/fable-library-js.4.22.0/MapUtil.js";
+import { addToDict } from "./fable_modules/fable-library-js.4.24.0/MapUtil.js";
 import { ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF } from "./Spreadsheet/ArcInvestigation.js";
 import { ArcInvestigation } from "./Core/ArcTypes.js";
 import { Assay_datamapFileNameFromIdentifier, Assay_fileNameFromIdentifier, Study_datamapFileNameFromIdentifier, Study_fileNameFromIdentifier } from "./Core/Helper/Identifier.js";
@@ -22,16 +26,16 @@ import { ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from "./Sprea
 import { DataMap__get_StaticHash, DataMap__set_StaticHash_Z524259A4 } from "./Core/DataMap.js";
 import { toFsWorkbook } from "./Spreadsheet/DataMap.js";
 import { ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from "./Spreadsheet/ArcAssay.js";
-import { Dictionary_tryGet } from "./fable_modules/FsSpreadsheet.6.3.0-alpha.4/Cells/FsCellsCollection.fs.js";
+import { Dictionary_tryGet } from "./fable_modules/FsSpreadsheet.6.3.1/Cells/FsCellsCollection.fs.js";
 import { Clone_createCloneContract_5000466F, Init_createAddRemoteContract_Z721C83C5, gitignoreContract, gitattributesContract, Init_createInitContract_6DFDD678 } from "./Contract/Git.js";
-import { FSharpSet__Contains, ofSeq, unionMany } from "./fable_modules/fable-library-js.4.22.0/Set.js";
-import { ofSeq as ofSeq_1 } from "./fable_modules/fable-library-js.4.22.0/Map.js";
+import { FSharpSet__Contains, ofSeq, unionMany } from "./fable_modules/fable-library-js.4.24.0/Set.js";
+import { ofSeq as ofSeq_1 } from "./fable_modules/fable-library-js.4.24.0/Map.js";
 import { fromString } from "./fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.js";
 import { encoder, decoder as decoder_1 } from "./JsonIO/ARC.js";
 import { toString } from "./fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js";
 import { defaultSpaces } from "./Json/Encode.js";
 import { ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_tryFromReadContract_Static_7570923F, ValidationPackagesConfigHelper_ReadContract, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toDeleteContract_Static_724DAE55, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toCreateContract_Static_724DAE55, ValidationPackagesConfigHelper_ConfigFilePath } from "./Contract/ValidationPackagesConfig.js";
-import { class_type } from "./fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { class_type } from "./fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export function ARCAux_getArcAssaysFromContracts(contracts) {
     return choose(ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F, contracts);
@@ -118,7 +122,31 @@ export class ARC {
         const this$ = this;
         this$._fs = fs;
     }
-    RemoveAssay(assayIdentifier) {
+    WriteAsync(arcPath) {
+        const this$ = this;
+        return fullFillContractBatchAsync(arcPath, this$.GetWriteContracts());
+    }
+    UpdateAsync(arcPath) {
+        const this$ = this;
+        return fullFillContractBatchAsync(arcPath, this$.GetUpdateContracts());
+    }
+    static loadAsync(arcPath) {
+        return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (getAllFilePathsAsync(arcPath).then((_arg) => {
+            const arc = ARC.fromFilePaths(toArray(_arg));
+            const contracts = arc.GetReadContracts();
+            return fullFillContractBatchAsync(arcPath, contracts).then((_arg_1) => {
+                const fulFilledContracts = _arg_1;
+                if (fulFilledContracts.tag === 1) {
+                    return Promise.resolve(new FSharpResult$2(1, [fulFilledContracts.fields[0]]));
+                }
+                else {
+                    arc.SetISAFromContracts(fulFilledContracts.fields[0]);
+                    return Promise.resolve(new FSharpResult$2(0, [arc]));
+                }
+            });
+        }))));
+    }
+    GetAssayRemoveContracts(assayIdentifier) {
         let i;
         const this$ = this;
         let isa;
@@ -143,10 +171,13 @@ export class ARC {
         const assayFolderPath = getAssayFolderPath(assayIdentifier);
         const filteredPaths = paths.filter((p) => !p.startsWith(assayFolderPath));
         this$.SetFilePaths(filteredPaths);
-        const collection = toList(delay(() => append(singleton(ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(assay)), delay(() => append(singleton(ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(isa)), delay(() => map_1(ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, studies)))))));
-        return Array.from(collection);
+        return toArray(delay(() => append(singleton(ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(assay)), delay(() => append(singleton(ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(isa)), delay(() => map_1(ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, studies)))))));
     }
-    RenameAssay(oldAssayIdentifier, newAssayIdentifier) {
+    RemoveAssayAsync(arcPath, assayIdentifier) {
+        const this$ = this;
+        return fullFillContractBatchAsync(arcPath, this$.GetAssayRemoveContracts(assayIdentifier));
+    }
+    GetAssayRenameContracts(oldAssayIdentifier, newAssayIdentifier) {
         let i;
         const this$ = this;
         let isa;
@@ -170,10 +201,13 @@ export class ARC {
         const newAssayFolderPath = getAssayFolderPath(newAssayIdentifier);
         const renamedPaths = map((p) => replace(p, oldAssayFolderPath, newAssayFolderPath), paths);
         this$.SetFilePaths(renamedPaths);
-        const collection = toList(delay(() => append(singleton(Contract.createRename(oldAssayFolderPath, newAssayFolderPath)), delay(() => this$.GetUpdateContracts()))));
-        return Array.from(collection);
+        return toArray(delay(() => append(singleton(Contract.createRename(oldAssayFolderPath, newAssayFolderPath)), delay(() => this$.GetUpdateContracts()))));
+    }
+    RenameAssayAsync(arcPath, oldAssayIdentifier, newAssayIdentifier) {
+        const this$ = this;
+        return fullFillContractBatchAsync(arcPath, this$.GetAssayRenameContracts(oldAssayIdentifier, newAssayIdentifier));
     }
-    RemoveStudy(studyIdentifier) {
+    GetStudyRemoveContracts(studyIdentifier) {
         const this$ = this;
         let isa;
         const matchValue = this$.ISA;
@@ -188,10 +222,13 @@ export class ARC {
         const studyFolderPath = getStudyFolderPath(studyIdentifier);
         const filteredPaths = paths.filter((p) => !p.startsWith(studyFolderPath));
         this$.SetFilePaths(filteredPaths);
-        const collection = ofArray([Contract.createDelete(studyFolderPath), ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(isa)]);
-        return Array.from(collection);
+        return [Contract.createDelete(studyFolderPath), ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(isa)];
     }
-    RenameStudy(oldStudyIdentifier, newStudyIdentifier) {
+    RemoveStudyAsync(arcPath, studyIdentifier) {
+        const this$ = this;
+        return fullFillContractBatchAsync(arcPath, this$.GetStudyRemoveContracts(studyIdentifier));
+    }
+    GetStudyRenameContracts(oldStudyIdentifier, newStudyIdentifier) {
         let i;
         const this$ = this;
         let isa;
@@ -215,8 +252,11 @@ export class ARC {
         const newStudyFolderPath = getStudyFolderPath(newStudyIdentifier);
         const renamedPaths = map((p) => replace(p, oldStudyFolderPath, newStudyFolderPath), paths);
         this$.SetFilePaths(renamedPaths);
-        const collection = toList(delay(() => append(singleton(Contract.createRename(oldStudyFolderPath, newStudyFolderPath)), delay(() => this$.GetUpdateContracts()))));
-        return Array.from(collection);
+        return toArray(delay(() => append(singleton(Contract.createRename(oldStudyFolderPath, newStudyFolderPath)), delay(() => this$.GetUpdateContracts()))));
+    }
+    RenameStudyAsync(arcPath, oldStudyIdentifier, newStudyIdentifier) {
+        const this$ = this;
+        return fullFillContractBatchAsync(arcPath, this$.GetStudyRenameContracts(oldStudyIdentifier, newStudyIdentifier));
     }
     static fromFilePaths(filePaths) {
         return new ARC(undefined, undefined, FileSystem.fromFilePaths(filePaths));

package/CWL/CWLTypes.js

@@ -1,7 +1,7 @@
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
-import { array_type, union_type, record_type, bool_type, option_type, string_type, class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { FSharpRef, Union, Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { array_type, union_type, record_type, bool_type, option_type, string_type, class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { FSharpRef, Union, Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { setProperty } from "../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
 
 export class FileInstance extends DynamicObj {

package/CWL/Decode.js

@@ -1,16 +1,16 @@
-import { disposeSafe, getEnumerator } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { disposeSafe, getEnumerator } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { setOptionalProperty, setProperty } from "../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
 import { DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
-import { ofArray, tail, head, isEmpty, empty, map, iterate } from "../fable_modules/fable-library-js.4.22.0/List.js";
+import { ofArray, tail, head, isEmpty, empty, map, iterate } from "../fable_modules/fable-library-js.4.24.0/List.js";
 import { read, int, float, resizearray, map as map_1, bool, string, object } from "../fable_modules/YAMLicious.0.0.3/Decode.fs.js";
-import { replace, toFail, printf, toText } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { replace, toFail, printf, toText } from "../fable_modules/fable-library-js.4.24.0/String.js";
 import { CWLOutput, OutputBinding } from "./Outputs.js";
 import { SchemaDefRequirementType_$ctor_541DA560, SoftwarePackage, DirectoryInstance_$ctor, FileInstance_$ctor, CWLType, DirentInstance } from "./CWLTypes.js";
-import { length, item, singleton, empty as empty_1, append, collect, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { getItemFromDict } from "../fable_modules/fable-library-js.4.22.0/MapUtil.js";
+import { length, item, singleton, empty as empty_1, append, collect, delay, toArray } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
+import { getItemFromDict } from "../fable_modules/fable-library-js.4.24.0/MapUtil.js";
 import { Requirement, ResourceRequirementInstance_$ctor_D76FC00, EnvironmentDef, DockerRequirement } from "./Requirements.js";
-import { some } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { FSharpMap__get_Values, FSharpMap__get_Keys } from "../fable_modules/fable-library-js.4.22.0/Map.js";
+import { some } from "../fable_modules/fable-library-js.4.24.0/Option.js";
+import { FSharpMap__get_Values, FSharpMap__get_Keys } from "../fable_modules/fable-library-js.4.24.0/Map.js";
 import { CWLInput, InputBinding } from "./Inputs.js";
 import { WorkflowStep, StepOutput, StepInput } from "./WorkflowSteps.js";
 import { CWLToolDescription } from "./ToolDescription.js";

package/CWL/Inputs.js

@@ -1,8 +1,8 @@
-import { FSharpRef, Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { class_type, record_type, bool_type, int32_type, option_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { value, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { FSharpRef, Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { class_type, record_type, bool_type, int32_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { value, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { CWLType } from "./CWLTypes.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { setOptionalProperty } from "../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
 

package/CWL/Outputs.js

@@ -1,8 +1,8 @@
-import { FSharpRef, Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { class_type, record_type, option_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { value, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { FSharpRef, Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { class_type, record_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { value, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { CWLType } from "./CWLTypes.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { setOptionalProperty } from "../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
 

package/CWL/Requirements.js

@@ -1,6 +1,6 @@
-import { Union, FSharpRef, Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { union_type, float64_type, array_type, record_type, class_type, option_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { Union, FSharpRef, Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { union_type, float64_type, array_type, record_type, class_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { setOptionalProperty } from "../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
 import { CWLType_$reflection, SoftwarePackage_$reflection, SchemaDefRequirementType_$reflection } from "./CWLTypes.js";

package/CWL/ToolDescription.js

@@ -1,6 +1,6 @@
-import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class CWLToolDescription extends DynamicObj {
     constructor(outputs, cwlVersion, baseCommand, requirements, hints, inputs, metadata) {

package/CWL/WorkflowDescription.js

@@ -1,6 +1,6 @@
-import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
 
 export class CWLWorkflowDescription extends DynamicObj {
     constructor(steps, inputs, outputs, cwlVersion, requirements, hints, metadata) {

package/CWL/WorkflowSteps.js

@@ -1,6 +1,6 @@
-import { Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { class_type, array_type, record_type, option_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { class_type, array_type, record_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
 
 export class StepInput extends Record {

package/Contract/ArcAssay.js

@@ -1,11 +1,11 @@
-import { equalsWith, item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.24.0/Array.js";
 import { getAssayFolderPath, combineMany } from "../FileSystem/Path.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Assay_fileNameFromIdentifier } from "../Core/Helper/Identifier.js";
 import { Contract } from "./Contract.js";
 import { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from "../Spreadsheet/ArcAssay.js";
-import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
 import { FileSystemTree } from "../FileSystem/FileSystemTree.js";
 
 export function $007CAssayPath$007C_$007C(input) {

package/Contract/ArcInvestigation.js

@@ -1,6 +1,6 @@
 import { combineMany } from "../FileSystem/Path.js";
-import { item, equalsWith } from "../fable_modules/fable-library-js.4.22.0/Array.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { item, equalsWith } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { Contract } from "./Contract.js";
 import { ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF } from "../Spreadsheet/ArcInvestigation.js";
 

package/Contract/ArcStudy.js

@@ -1,11 +1,11 @@
-import { equalsWith, item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.24.0/Array.js";
 import { getStudyFolderPath, combineMany } from "../FileSystem/Path.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 import { Study_fileNameFromIdentifier } from "../Core/Helper/Identifier.js";
 import { Contract } from "./Contract.js";
 import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from "../Spreadsheet/ArcStudy.js";
-import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
 import { FileSystemTree } from "../FileSystem/FileSystemTree.js";
 
 export function $007CStudyPath$007C_$007C(input) {

package/Contract/Contract.js

@@ -1,6 +1,6 @@
-import { Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
-import { class_type, option_type, record_type, array_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
+import { class_type, option_type, record_type, array_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { defaultArg } from "../fable_modules/fable-library-js.4.24.0/Option.js";
 
 export class CLITool extends Record {
     constructor(Name, Arguments) {

package/Contract/Datamap.js

@@ -1,6 +1,6 @@
-import { equalsWith, item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.24.0/Array.js";
 import { combineMany } from "../FileSystem/Path.js";
-import { safeHash, defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { safeHash, defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { Study_datamapFileNameFromIdentifier, Assay_datamapFileNameFromIdentifier } from "../Core/Helper/Identifier.js";
 import { Contract } from "./Contract.js";
 import { fromFsWorkbook, toFsWorkbook } from "../Spreadsheet/DataMap.js";

package/Contract/Git.js

@@ -1,10 +1,10 @@
 import { Contract, CLITool } from "./Contract.js";
 import { dgi } from "../FileSystem/DefaultGitignore.js";
 import { dga } from "../FileSystem/DefaultGitattributes.js";
-import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
-import { value, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { replace } from "../fable_modules/fable-library-js.4.22.0/String.js";
-import { empty, singleton, append, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
+import { value, defaultArg } from "../fable_modules/fable-library-js.4.24.0/Option.js";
+import { replace } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { empty, singleton, append, delay, toArray } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
 
 export function gitWithArgs(arguments$) {
     return CLITool.create("git", arguments$);

package/Contract/ValidationPackagesConfig.js

@@ -1,7 +1,7 @@
 import { combineMany } from "../FileSystem/Path.js";
 import { Contract } from "./Contract.js";
-import { item, equalsWith } from "../fable_modules/fable-library-js.4.22.0/Array.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { item, equalsWith } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
 import { ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toYamlString_Static_71136F3F } from "../Yaml/ValidationPackagesConfig.js";
 
 export const ValidationPackagesConfigHelper_ConfigFilePath = combineMany([".arc", "validation_packages.yml"]);

package/ContractIO/ContractIO.js

@@ -0,0 +1,204 @@
+import { startSequential, catchWith } from "../CrossAsync.js";
+import { printf, toText } from "../fable_modules/fable-library-js.4.24.0/String.js";
+import { FSharpResult$2 } from "../fable_modules/fable-library-js.4.24.0/Result.js";
+import { PromiseBuilder__Delay_62FBFDE1, PromiseBuilder__Run_212F1D4B } from "../fable_modules/Fable.Promise.3.2.0/Promise.fs.js";
+import { promise } from "../fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js";
+import { combine } from "../FileSystem/Path.js";
+import { deleteFileOrDirectoryAsync, renameFileOrDirectoryAsync, writeFileXlsxAsync, writeFileTextAsync, ensureDirectoryOfFileAsync, readFileTextAsync, readFileXlsxAsync } from "./FileSystemHelper.js";
+import { Contract } from "../Contract/Contract.js";
+import { curry2 } from "../fable_modules/fable-library-js.4.24.0/Util.js";
+import { append, fold } from "../fable_modules/fable-library-js.4.24.0/Array.js";
+
+export function fulfillReadContractAsync(basePath, c) {
+    return catchWith((e_1) => {
+        let arg_4;
+        return new FSharpResult$2(1, [(arg_4 = e_1.message, toText(printf("Error reading contract %s: %s"))(c.Path)(arg_4))]);
+    }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const matchValue = c.DTOType;
+        let matchResult;
+        if (matchValue != null) {
+            switch (matchValue) {
+                case "ISA_Assay":
+                case "ISA_Investigation":
+                case "ISA_Study":
+                case "ISA_Datamap": {
+                    matchResult = 0;
+                    break;
+                }
+                case "PlainText": {
+                    matchResult = 1;
+                    break;
+                }
+                default:
+                    matchResult = 2;
+            }
+        }
+        else {
+            matchResult = 2;
+        }
+        switch (matchResult) {
+            case 0: {
+                const path = combine(basePath, c.Path);
+                return readFileXlsxAsync(path).then((_arg) => (Promise.resolve(new FSharpResult$2(0, [new Contract(c.Operation, c.Path, c.DTOType, _arg)]))));
+            }
+            case 1: {
+                const path_1 = combine(basePath, c.Path);
+                return readFileTextAsync(path_1).then((_arg_1) => (Promise.resolve(new FSharpResult$2(0, [new Contract(c.Operation, c.Path, c.DTOType, _arg_1)]))));
+            }
+            default:
+                return Promise.resolve(new FSharpResult$2(1, [toText(printf("Contract %s is neither an ISA nor a freetext contract"))(c.Path)]));
+        }
+    }).catch((_arg_2) => {
+        let arg_2;
+        return Promise.resolve(new FSharpResult$2(1, [(arg_2 = _arg_2.message, toText(printf("Error reading contract %s: %s"))(c.Path)(arg_2))]));
+    })))));
+}
+
+export function fullfillContractBatchAsyncBy(contractF, basePath, cs) {
+    return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (startSequential(curry2(contractF)(basePath), cs).then((_arg) => {
+        const res = fold((acc, cr) => {
+            const copyOfStruct = acc;
+            if (copyOfStruct.tag === 1) {
+                const copyOfStruct_1 = cr;
+                if (copyOfStruct_1.tag === 1) {
+                    return new FSharpResult$2(1, [append(copyOfStruct.fields[0], [copyOfStruct_1.fields[0]])]);
+                }
+                else {
+                    return new FSharpResult$2(1, [copyOfStruct.fields[0]]);
+                }
+            }
+            else {
+                const copyOfStruct_2 = cr;
+                if (copyOfStruct_2.tag === 1) {
+                    return new FSharpResult$2(1, [[copyOfStruct_2.fields[0]]]);
+                }
+                else {
+                    return new FSharpResult$2(0, [append(copyOfStruct.fields[0], [copyOfStruct_2.fields[0]])]);
+                }
+            }
+        }, new FSharpResult$2(0, [[]]), _arg);
+        return Promise.resolve(res);
+    }))));
+}
+
+export function fulfillWriteContractAsync(basePath, c) {
+    return catchWith((e_1) => {
+        let arg_4;
+        return new FSharpResult$2(1, [(arg_4 = e_1.message, toText(printf("Error writing contract %s: %s"))(c.Path)(arg_4))]);
+    }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const matchValue = c.DTO;
+        if (matchValue == null) {
+            const path_2 = combine(basePath, c.Path);
+            return ensureDirectoryOfFileAsync(path_2).then(() => (writeFileTextAsync(path_2, "").then(() => (Promise.resolve(new FSharpResult$2(0, [c]))))));
+        }
+        else if (typeof matchValue === "string") {
+            const t = matchValue;
+            const path = combine(basePath, c.Path);
+            return ensureDirectoryOfFileAsync(path).then(() => (writeFileTextAsync(path, t).then(() => (Promise.resolve(new FSharpResult$2(0, [c]))))));
+        }
+        else {
+            const wb = matchValue;
+            const path_1 = combine(basePath, c.Path);
+            return ensureDirectoryOfFileAsync(path_1).then(() => (writeFileXlsxAsync(path_1, wb).then(() => (Promise.resolve(new FSharpResult$2(0, [c]))))));
+        }
+    }).catch((_arg_6) => {
+        let arg_2;
+        return Promise.resolve(new FSharpResult$2(1, [(arg_2 = _arg_6.message, toText(printf("Error writing contract %s: %s"))(c.Path)(arg_2))]));
+    })))));
+}
+
+export function fulfillUpdateContractAsync(basePath, c) {
+    return catchWith((e_1) => {
+        let arg_4;
+        return new FSharpResult$2(1, [(arg_4 = e_1.message, toText(printf("Error updating contract %s: %s"))(c.Path)(arg_4))]);
+    }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const matchValue = c.DTO;
+        if (matchValue == null) {
+            const path_2 = combine(basePath, c.Path);
+            return ensureDirectoryOfFileAsync(path_2).then(() => (writeFileTextAsync(path_2, "").then(() => (Promise.resolve(new FSharpResult$2(0, [c]))))));
+        }
+        else if (typeof matchValue === "string") {
+            const t = matchValue;
+            const path = combine(basePath, c.Path);
+            return ensureDirectoryOfFileAsync(path).then(() => (writeFileTextAsync(path, t).then(() => (Promise.resolve(new FSharpResult$2(0, [c]))))));
+        }
+        else {
+            const wb = matchValue;
+            const path_1 = combine(basePath, c.Path);
+            return ensureDirectoryOfFileAsync(path_1).then(() => (writeFileXlsxAsync(path_1, wb).then(() => (Promise.resolve(new FSharpResult$2(0, [c]))))));
+        }
+    }).catch((_arg_6) => {
+        let arg_2;
+        return Promise.resolve(new FSharpResult$2(1, [(arg_2 = _arg_6.message, toText(printf("Error updating contract %s: %s"))(c.Path)(arg_2))]));
+    })))));
+}
+
+export function fullfillRenameContractAsync(basePath, c) {
+    return catchWith((e_1) => {
+        let arg_5;
+        return new FSharpResult$2(1, [(arg_5 = e_1.message, toText(printf("Error renaming contract %s: %s"))(c.Path)(arg_5))]);
+    }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const matchValue = c.DTO;
+        let matchResult, t_1, t_2;
+        if (matchValue != null) {
+            if (typeof matchValue === "string") {
+                if (matchValue === c.Path) {
+                    matchResult = 0;
+                    t_1 = matchValue;
+                }
+                else {
+                    matchResult = 1;
+                    t_2 = matchValue;
+                }
+            }
+            else {
+                matchResult = 2;
+            }
+        }
+        else {
+            matchResult = 2;
+        }
+        switch (matchResult) {
+            case 0:
+                return Promise.resolve(new FSharpResult$2(1, [toText(printf("Rename Contract %s old and new Path are the same"))(c.Path)]));
+            case 1: {
+                const newPath = combine(basePath, t_2);
+                const oldPath = combine(basePath, c.Path);
+                return renameFileOrDirectoryAsync(oldPath, newPath).then(() => (Promise.resolve(new FSharpResult$2(0, [c]))));
+            }
+            default:
+                return Promise.resolve(new FSharpResult$2(1, [toText(printf("Rename Contract %s does not contain new Path"))(c.Path)]));
+        }
+    }).catch((_arg_1) => {
+        let arg_3;
+        return Promise.resolve(new FSharpResult$2(1, [(arg_3 = _arg_1.message, toText(printf("Error renaming contract %s: %s"))(c.Path)(arg_3))]));
+    })))));
+}
+
+export function fullfillDeleteContractAsync(basePath, c) {
+    return catchWith((e_1) => {
+        let arg_3;
+        return new FSharpResult$2(1, [(arg_3 = e_1.message, toText(printf("Error deleting contract %s: %s"))(c.Path)(arg_3))]);
+    }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => (PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const path = combine(basePath, c.Path);
+        return deleteFileOrDirectoryAsync(path).then(() => (Promise.resolve(new FSharpResult$2(0, [c]))));
+    }).catch((_arg_1) => {
+        let arg_1;
+        return Promise.resolve(new FSharpResult$2(1, [(arg_1 = _arg_1.message, toText(printf("Error deleting contract %s: %s"))(c.Path)(arg_1))]));
+    })))));
+}
+
+export function fullFillContract(basePath, c) {
+    return catchWith((e) => {
+        let arg_2;
+        return new FSharpResult$2(1, [(arg_2 = e.message, toText(printf("Error fulfilling contract %s: %s"))(c.Path)(arg_2))]);
+    }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => {
+        const matchValue = c.Operation;
+        return (matchValue === "READ") ? (fulfillReadContractAsync(basePath, c)) : ((matchValue === "CREATE") ? (fulfillWriteContractAsync(basePath, c)) : ((matchValue === "UPDATE") ? (fulfillUpdateContractAsync(basePath, c)) : ((matchValue === "DELETE") ? (fullfillDeleteContractAsync(basePath, c)) : ((matchValue === "RENAME") ? (fullfillRenameContractAsync(basePath, c)) : (Promise.resolve(new FSharpResult$2(1, [toText(printf("Operation %A not supported"))(c.Operation)])))))));
+    })));
+}
+
+export function fullFillContractBatchAsync(basePath, cs) {
+    return fullfillContractBatchAsyncBy(fullFillContract, basePath, cs);
+}
+