@nfdi4plants/arctrl 2.1.0-alpha.4 → 2.2.1

package/ROCrate/ISAProfile/LabProtocol.js

@@ -1,11 +1,11 @@
 import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { setOptionalProperty } from "../../fable_modules/DynamicObj.4.0.0/DynObj.fs.js";
-import { ROCrateObject_$reflection, ROCrateObject } from "../ROCrateObject.js";
+import { setOptionalProperty } from "../../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
+import { LDObject_$reflection, LDObject } from "../LDObject.js";
 import { unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { class_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
-export class LabProtocol extends ROCrateObject {
+export class LabProtocol extends LDObject {
     constructor(id, additionalType, name, intendedUse, description, url, comment, version, labEquipment, reagent, computationalTool) {
         super(id, "bioschemas.org/LabProtocol", unwrap(additionalType));
         const this$ = new FSharpRef(defaultOf());
@@ -24,7 +24,7 @@ export class LabProtocol extends ROCrateObject {
 }
 
 export function LabProtocol_$reflection() {
-    return class_type("ARCtrl.ROCrate.LabProtocol", undefined, LabProtocol, ROCrateObject_$reflection());
+    return class_type("ARCtrl.ROCrate.LabProtocol", undefined, LabProtocol, LDObject_$reflection());
 }
 
 export function LabProtocol_$ctor_3514295B(id, additionalType, name, intendedUse, description, url, comment, version, labEquipment, reagent, computationalTool) {

package/ROCrate/ISAProfile/Person.js

@@ -1,11 +1,11 @@
+import { setOptionalProperty, setProperty, tryGetPropertyValue } from "../../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
+import { unwrap, value as value_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { setOptionalProperty, setProperty } from "../../fable_modules/DynamicObj.4.0.0/DynObj.fs.js";
-import { ROCrateObject_$reflection, ROCrateObject } from "../ROCrateObject.js";
-import { unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { LDObject_$reflection, LDObject } from "../LDObject.js";
 import { class_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
-export class Person extends ROCrateObject {
+export class Person extends LDObject {
     constructor(id, givenName, additionalType, familyName, email, identifier, affiliation, jobTitle, additionalName, address, telephone, faxNumber, disambiguatingDescription) {
         super(id, "schema.org/Person", unwrap(additionalType));
         const this$ = new FSharpRef(defaultOf());
@@ -23,10 +23,37 @@ export class Person extends ROCrateObject {
         setOptionalProperty("faxNumber", faxNumber, this$.contents);
         setOptionalProperty("disambiguatingDescription", disambiguatingDescription, this$.contents);
     }
+    GetGivenName() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("givenName", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("givenName");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"givenName"}' is set on this '${"Person"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"givenName"}' set on this '${"Person"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getGivenName() {
+        return (p) => p.GetGivenName();
+    }
 }
 
 export function Person_$reflection() {
-    return class_type("ARCtrl.ROCrate.Person", undefined, Person, ROCrateObject_$reflection());
+    return class_type("ARCtrl.ROCrate.Person", undefined, Person, LDObject_$reflection());
 }
 
 export function Person_$ctor_Z45412208(id, givenName, additionalType, familyName, email, identifier, affiliation, jobTitle, additionalName, address, telephone, faxNumber, disambiguatingDescription) {

package/ROCrate/ISAProfile/PropertyValue.js

@@ -1,11 +1,11 @@
+import { setOptionalProperty, setProperty, tryGetPropertyValue } from "../../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
+import { unwrap, value as value_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { setOptionalProperty, setProperty } from "../../fable_modules/DynamicObj.4.0.0/DynObj.fs.js";
-import { ROCrateObject_$reflection, ROCrateObject } from "../ROCrateObject.js";
-import { unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { LDObject_$reflection, LDObject } from "../LDObject.js";
 import { class_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
-export class PropertyValue extends ROCrateObject {
+export class PropertyValue extends LDObject {
     constructor(id, name, value, propertyID, unitCode, unitText, valueReference, additionalType) {
         super(id, "schema.org/PropertyValue", unwrap(additionalType));
         const this$ = new FSharpRef(defaultOf());
@@ -18,10 +18,64 @@ export class PropertyValue extends ROCrateObject {
         setOptionalProperty("unitText", unitText, this$.contents);
         setOptionalProperty("valueReference", valueReference, this$.contents);
     }
+    GetName() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("name", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("name");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"name"}' is set on this '${"PropertyValue"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"name"}' set on this '${"PropertyValue"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getName() {
+        return (lp) => lp.GetName();
+    }
+    GetValue() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("name", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("name");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"name"}' is set on this '${"PropertyValue"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"name"}' set on this '${"PropertyValue"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getValue() {
+        return (lp) => lp.GetValue();
+    }
 }
 
 export function PropertyValue_$reflection() {
-    return class_type("ARCtrl.ROCrate.PropertyValue", undefined, PropertyValue, ROCrateObject_$reflection());
+    return class_type("ARCtrl.ROCrate.PropertyValue", undefined, PropertyValue, LDObject_$reflection());
 }
 
 export function PropertyValue_$ctor_7804003(id, name, value, propertyID, unitCode, unitText, valueReference, additionalType) {

package/ROCrate/ISAProfile/Sample.js

@@ -1,11 +1,11 @@
+import { setOptionalProperty, setProperty, tryGetPropertyValue } from "../../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
+import { unwrap, value as value_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { setOptionalProperty, setProperty } from "../../fable_modules/DynamicObj.4.0.0/DynObj.fs.js";
-import { ROCrateObject_$reflection, ROCrateObject } from "../ROCrateObject.js";
-import { unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { LDObject_$reflection, LDObject } from "../LDObject.js";
 import { class_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
-export class Sample extends ROCrateObject {
+export class Sample extends LDObject {
     constructor(id, name, additionalType, additionalProperty, derivesFrom) {
         super(id, "bioschemas.org/Sample", unwrap(additionalType));
         const this$ = new FSharpRef(defaultOf());
@@ -15,10 +15,37 @@ export class Sample extends ROCrateObject {
         setOptionalProperty("additionalProperty", additionalProperty, this$.contents);
         setOptionalProperty("derivesFrom", derivesFrom, this$.contents);
     }
+    GetName() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("name", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("name");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"name"}' is set on this '${"Sample"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"name"}' set on this '${"Sample"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getName() {
+        return (s) => s.GetName();
+    }
 }
 
 export function Sample_$reflection() {
-    return class_type("ARCtrl.ROCrate.Sample", undefined, Sample, ROCrateObject_$reflection());
+    return class_type("ARCtrl.ROCrate.Sample", undefined, Sample, LDObject_$reflection());
 }
 
 export function Sample_$ctor_7AC741F8(id, name, additionalType, additionalProperty, derivesFrom) {

package/ROCrate/ISAProfile/ScholarlyArticle.js

@@ -1,11 +1,11 @@
+import { setOptionalProperty, setProperty, tryGetPropertyValue } from "../../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
+import { unwrap, value as value_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { setOptionalProperty, setProperty } from "../../fable_modules/DynamicObj.4.0.0/DynObj.fs.js";
-import { ROCrateObject_$reflection, ROCrateObject } from "../ROCrateObject.js";
-import { unwrap } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { LDObject_$reflection, LDObject } from "../LDObject.js";
 import { class_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
-export class ScholarlyArticle extends ROCrateObject {
+export class ScholarlyArticle extends LDObject {
     constructor(id, headline, identifier, additionalType, author, url, creativeWorkStatus, disambiguatingDescription) {
         super(id, "schema.org/ScholarlyArticle", unwrap(additionalType));
         const this$ = new FSharpRef(defaultOf());
@@ -18,10 +18,64 @@ export class ScholarlyArticle extends ROCrateObject {
         setOptionalProperty("creativeWorkStatus", creativeWorkStatus, this$.contents);
         setOptionalProperty("disambiguatingDescription", disambiguatingDescription, this$.contents);
     }
+    GetHeadline() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("headline", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("headline");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"headline"}' is set on this '${"ScholarlyArticle"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"headline"}' set on this '${"ScholarlyArticle"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getHeadline() {
+        return (s) => s.GetHeadline();
+    }
+    GetIdentifier() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("identifier", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("identifier");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"identifier"}' is set on this '${"ScholarlyArticle"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"identifier"}' set on this '${"ScholarlyArticle"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getIdentifier() {
+        return (s) => s.GetIdentifier();
+    }
 }
 
 export function ScholarlyArticle_$reflection() {
-    return class_type("ARCtrl.ROCrate.ScholarlyArticle", undefined, ScholarlyArticle, ROCrateObject_$reflection());
+    return class_type("ARCtrl.ROCrate.ScholarlyArticle", undefined, ScholarlyArticle, LDObject_$reflection());
 }
 
 export function ScholarlyArticle_$ctor_11693003(id, headline, identifier, additionalType, author, url, creativeWorkStatus, disambiguatingDescription) {

package/ROCrate/ISAProfile/Study.js

@@ -1,6 +1,7 @@
+import { setOptionalProperty, setProperty, tryGetPropertyValue } from "../../fable_modules/DynamicObj.4.0.3/DynObj.fs.js";
+import { value as value_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { FSharpRef } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
-import { setOptionalProperty, setProperty } from "../../fable_modules/DynamicObj.4.0.0/DynObj.fs.js";
 import { Dataset_$reflection, Dataset } from "./Dataset.js";
 import { class_type } from "../../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
@@ -23,13 +24,40 @@ export class Study extends Dataset {
         setOptionalProperty("headline", headline, this$.contents);
         setOptionalProperty("url", url, this$.contents);
     }
+    GetIdentifier() {
+        const this$ = this;
+        const obj = this$;
+        if (tryGetPropertyValue("identifier", obj) != null) {
+            let matchValue;
+            const matchValue_1 = obj.TryGetPropertyValue("identifier");
+            if (matchValue_1 != null) {
+                const o = value_1(matchValue_1);
+                matchValue = ((typeof o === "string") ? o : undefined);
+            }
+            else {
+                matchValue = undefined;
+            }
+            if (matchValue == null) {
+                throw new Error(`Property '${"identifier"}' is set on this '${"Study"}' object but cannot be cast to '${"String"}'`);
+            }
+            else {
+                return matchValue;
+            }
+        }
+        else {
+            throw new Error(`No property '${"identifier"}' set on this '${"Study"}' object although it is mandatory. Was it created correctly?`);
+        }
+    }
+    static get getIdentifier() {
+        return (inv) => inv.GetIdentifier();
+    }
 }
 
 export function Study_$reflection() {
     return class_type("ARCtrl.ROCrate.Study", undefined, Study, Dataset_$reflection());
 }
 
-export function Study_$ctor_Z3E174868(id, identifier, about, citation, comment, creator, dateCreated, dateModified, datePublished, description, hasPart, headline, url) {
+export function Study_$ctor_Z47833D48(id, identifier, about, citation, comment, creator, dateCreated, dateModified, datePublished, description, hasPart, headline, url) {
     return new Study(id, identifier, about, citation, comment, creator, dateCreated, dateModified, datePublished, description, hasPart, headline, url);
 }
 

package/ROCrate/LDObject.js

@@ -0,0 +1,105 @@
+import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js";
+import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { value as value_1, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+
+export class LDContext extends DynamicObj {
+    constructor() {
+        super();
+    }
+}
+
+export function LDContext_$reflection() {
+    return class_type("ARCtrl.ROCrate.LDContext", undefined, LDContext, DynamicObj_$reflection());
+}
+
+export function LDContext_$ctor() {
+    return new LDContext();
+}
+
+export class LDObject extends DynamicObj {
+    constructor(id, schemaType, additionalType) {
+        super();
+        this.id = id;
+        this["schemaType@22"] = schemaType;
+        this["additionalType@23"] = additionalType;
+    }
+    get Id() {
+        const this$ = this;
+        return this$.id;
+    }
+    get SchemaType() {
+        const this$ = this;
+        return this$["schemaType@22"];
+    }
+    set SchemaType(value) {
+        const this$ = this;
+        this$["schemaType@22"] = value;
+    }
+    get AdditionalType() {
+        const this$ = this;
+        return unwrap(this$["additionalType@23"]);
+    }
+    set AdditionalType(value) {
+        const this$ = this;
+        this$["additionalType@23"] = value;
+    }
+    SetContext(context) {
+        const this$ = this;
+        this$.SetProperty("@context", context);
+    }
+    static setContext(context) {
+        return (roc) => {
+            roc.SetContext(context);
+        };
+    }
+    TryGetContext() {
+        const this$ = this;
+        const matchValue = this$.TryGetPropertyValue("@context");
+        if (matchValue != null) {
+            const o = value_1(matchValue);
+            return (o instanceof DynamicObj) ? o : undefined;
+        }
+        else {
+            return undefined;
+        }
+    }
+    static tryGetContext() {
+        return (roc) => roc.TryGetContext();
+    }
+    RemoveContext() {
+        const this$ = this;
+        return this$.RemoveProperty("@context");
+    }
+    static removeContext() {
+        return (roc) => roc.RemoveContext();
+    }
+    get SchemaType() {
+        const this$ = this;
+        return this$["schemaType@22"];
+    }
+    set SchemaType(value) {
+        const this$ = this;
+        this$["schemaType@22"] = value;
+    }
+    get Id() {
+        const this$ = this;
+        return this$.id;
+    }
+    get AdditionalType() {
+        const this$ = this;
+        return unwrap(this$["additionalType@23"]);
+    }
+    set AdditionalType(value) {
+        const this$ = this;
+        this$["additionalType@23"] = value;
+    }
+}
+
+export function LDObject_$reflection() {
+    return class_type("ARCtrl.ROCrate.LDObject", undefined, LDObject, DynamicObj_$reflection());
+}
+
+export function LDObject_$ctor_Z2FC25A28(id, schemaType, additionalType) {
+    return new LDObject(id, schemaType, additionalType);
+}
+

package/Spreadsheet/AnnotationTable/ArcTable.js

@@ -1,6 +1,6 @@
 import { iterateIndexed, length, sortBy, collect as collect_1, exists, toArray, ofArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../fable_modules/fable-library-js.4.22.0/List.js";
 import { item, map as map_1 } from "../../fable_modules/fable-library-js.4.22.0/Array.js";
-import { singleton as singleton_1, collect, map as map_2, delay, toArray as toArray_1, tryFind } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { fold as fold_1, singleton as singleton_1, collect, map as map_2, delay, toArray as toArray_1, tryFind } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { toStringCellColumns, fixDeprecatedIOHeader, fromStringCellColumns } from "./CompositeColumn.js";
 import { printf, toFail } from "../../fable_modules/fable-library-js.4.22.0/String.js";
 import { Dictionary_tryGet, FsCellsCollection__TryGetCell_Z37302880 } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/Cells/FsCellsCollection.fs.js";
@@ -11,6 +11,7 @@ import { FsRangeBase__Cell_Z3407A44B, FsRangeBase__get_RangeAddress } from "../.
 import { ArcTable } from "../../Core/Table/ArcTable.js";
 import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorksheet.fs.js";
 import { comparePrimitives } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
+import { max } from "../../fable_modules/fable-library-js.4.22.0/Double.js";
 import { addToDict } from "../../fable_modules/fable-library-js.4.22.0/MapUtil.js";
 
 /**
@@ -121,17 +122,19 @@ export function tryFromFsWorksheet(sheet) {
 export function toFsWorksheet(index, table) {
     const stringCount = new Map([]);
     const ws = new FsWorksheet(table.Name);
-    if (table.Columns.length === 0) {
+    if (table.ColumnCount === 0) {
         return ws;
     }
     else {
         const columns = collect_1(toStringCellColumns, sortBy(classifyColumnOrder, ofArray(table.Columns), {
             Compare: comparePrimitives,
         }));
-        const maxRow = length(head(columns)) | 0;
-        const maxCol = length(columns) | 0;
+        let tableRowCount;
+        const maxRow = fold_1((acc, c) => max(acc, length(c)), 0, columns) | 0;
+        tableRowCount = ((maxRow === 1) ? 2 : maxRow);
+        const tableColumnCount = length(columns) | 0;
         const name = (index == null) ? "annotationTable" : (`${"annotationTable"}${index}`);
-        const fsTable = ws.Table(name, FsRangeAddress_$ctor_7E77A4A0(FsAddress_$ctor_Z37302880(1, 1), FsAddress_$ctor_Z37302880(maxRow, maxCol)));
+        const fsTable = ws.Table(name, FsRangeAddress_$ctor_7E77A4A0(FsAddress_$ctor_Z37302880(1, 1), FsAddress_$ctor_Z37302880(tableRowCount, tableColumnCount)));
         iterateIndexed((colI, col) => {
             iterateIndexed((rowI, stringCell) => {
                 let value;

package/Spreadsheet/Template.js

@@ -9,13 +9,14 @@ import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
 import { addToDict } from "../fable_modules/fable-library-js.4.22.0/MapUtil.js";
 import { List_distinct } from "../fable_modules/fable-library-js.4.22.0/Seq2.js";
 import { getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { tryPick, iterateIndexed, toList, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { tryPick, iterateIndexed, tryFind, toList, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { Person_orcidKey } from "../Core/Conversion.js";
 import { toArray } from "../fable_modules/fable-library-js.4.22.0/Option.js";
 import { toRows as toRows_1, fromRows as fromRows_1 } from "./Metadata/Contacts.js";
 import { parse } from "../fable_modules/fable-library-js.4.22.0/Guid.js";
 import { Template, Organisation } from "../Core/Template.js";
 import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorksheet.fs.js";
+import { printf, toConsole } from "../fable_modules/fable-library-js.4.22.0/String.js";
 import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
 import { now } from "../fable_modules/fable-library-js.4.22.0/Date.js";
 import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorkbook.fs.js";
@@ -269,6 +270,23 @@ export function Template_fromParts(templateInfo, ers, tags, authors, table, last
     return Template.make(id, table, templateInfo.Name, templateInfo.Description, organisation, templateInfo.Version, authors_1, repos, tags_1, lastUpdated);
 }
 
+export function Template_isMetadataSheetName(name) {
+    if (name === "isa_template") {
+        return true;
+    }
+    else {
+        return name === "SwateTemplateMetadata";
+    }
+}
+
+export function Template_isMetadataSheet(sheet) {
+    return Template_isMetadataSheetName(sheet.Name);
+}
+
+export function Template_tryGetMetadataSheet(doc) {
+    return tryFind(Template_isMetadataSheet, doc.GetWorksheets());
+}
+
 export function Template_toMetadataSheet(template) {
     const sheet = new FsWorksheet("isa_template");
     iterateIndexed((rowI, r) => {
@@ -293,39 +311,39 @@ export function Template_fromMetadataCollection(collection) {
  * Reads an assay from a spreadsheet
  */
 export function Template_fromFsWorkbook(doc) {
-    let matchValue_2, matchValue_4, ws_3, matchValue_5, ws_2, matchValue_3;
+    let matchValue_1, matchValue_3, ws_3, matchValue_4, ws_2, matchValue_2;
     let patternInput;
-    const matchValue = doc.TryGetWorksheetByName("isa_template");
+    const matchValue = Template_tryGetMetadataSheet(doc);
     if (matchValue == null) {
-        const matchValue_1 = doc.TryGetWorksheetByName("SwateTemplateMetadata");
-        patternInput = ((matchValue_1 == null) ? [Metadata_Template_TemplateInfo_get_empty(), empty(), empty(), empty()] : Template_fromMetadataSheet(matchValue_1));
+        toConsole(printf("Could not find metadata sheet with sheetname \"isa_template\" or deprecated sheetname \"Template\""));
+        patternInput = [Metadata_Template_TemplateInfo_get_empty(), empty(), empty(), empty()];
     }
     else {
         patternInput = Template_fromMetadataSheet(matchValue);
     }
     const templateInfo = patternInput[0];
     const sheets = doc.GetWorksheets();
-    return Template_fromParts(templateInfo, patternInput[1], patternInput[2], patternInput[3], (matchValue_2 = tryPick((ws) => {
+    return Template_fromParts(templateInfo, patternInput[1], patternInput[2], patternInput[3], (matchValue_1 = tryPick((ws) => {
         if (exists((t) => (t.Name === templateInfo.Table), ws.Tables)) {
             return ws;
         }
         else {
             return undefined;
         }
-    }, sheets), (matchValue_2 == null) ? ((matchValue_4 = tryPick((ws_1) => {
+    }, sheets), (matchValue_1 == null) ? ((matchValue_3 = tryPick((ws_1) => {
         if (ws_1.Name === templateInfo.Table) {
             return ws_1;
         }
         else {
             return undefined;
         }
-    }, sheets), (matchValue_4 == null) ? (() => {
+    }, sheets), (matchValue_3 == null) ? (() => {
         throw new TemplateReadError(`No worksheet or table with name \`${templateInfo.Table}\` found`);
-    })() : ((ws_3 = matchValue_4, (matchValue_5 = tryFromFsWorksheet(ws_3), (matchValue_5 == null) ? (() => {
+    })() : ((ws_3 = matchValue_3, (matchValue_4 = tryFromFsWorksheet(ws_3), (matchValue_4 == null) ? (() => {
         throw new TemplateReadError(`Ws with name \`${ws_3.Name}\` could not be converted to a table`);
-    })() : matchValue_5))))) : ((ws_2 = matchValue_2, (matchValue_3 = tryFromFsWorksheet(ws_2), (matchValue_3 == null) ? (() => {
+    })() : matchValue_4))))) : ((ws_2 = matchValue_1, (matchValue_2 = tryFromFsWorksheet(ws_2), (matchValue_2 == null) ? (() => {
         throw new TemplateReadError(`Ws with name \`${ws_2.Name}\` could not be converted to a table`);
-    })() : matchValue_3)))), now());
+    })() : matchValue_2)))), now());
 }
 
 export function Template_toFsWorkbook(template) {

package/Yaml/ValidationPackage.js

@@ -1,15 +1,15 @@
 import { ofArray, choose } from "../fable_modules/fable-library-js.4.22.0/List.js";
 import { equals } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { Config, YAMLElement } from "../fable_modules/YAMLicious.0.0.1/YAMLiciousTypes.fs.js";
-import { tryInclude, string } from "../fable_modules/YAMLicious.0.0.1/Encode.fs.js";
+import { Config, YAMLElement } from "../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js";
+import { tryInclude, string } from "../fable_modules/YAMLicious.0.0.3/Encode.fs.js";
 import { singleton, collect, delay, toList } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { YAMLContent_create_27AED5E3 } from "../fable_modules/YAMLicious.0.0.1/YAMLiciousTypes.fs.js";
-import { string as string_1, object } from "../fable_modules/YAMLicious.0.0.1/Decode.fs.js";
+import { YAMLContent_create_27AED5E3 } from "../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js";
+import { string as string_1, object } from "../fable_modules/YAMLicious.0.0.3/Decode.fs.js";
 import { ValidationPackage } from "../ValidationPackages/ValidationPackage.js";
 import { unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { read } from "../fable_modules/YAMLicious.0.0.1/Reader.fs.js";
+import { read } from "../fable_modules/YAMLicious.0.0.3/Reader.fs.js";
 import { defaultWhitespace } from "./Encode.js";
-import { write } from "../fable_modules/YAMLicious.0.0.1/Writer.fs.js";
+import { write } from "../fable_modules/YAMLicious.0.0.3/Writer.fs.js";
 
 export function ValidationPackage_encoder(validationpackage) {
     const objSeq = choose((tupledArg) => {

package/Yaml/ValidationPackagesConfig.js

@@ -1,16 +1,16 @@
 import { ofArray, choose } from "../fable_modules/fable-library-js.4.22.0/List.js";
 import { equals } from "../fable_modules/fable-library-js.4.22.0/Util.js";
-import { Config, YAMLElement } from "../fable_modules/YAMLicious.0.0.1/YAMLiciousTypes.fs.js";
-import { resizearray, string, tryInclude } from "../fable_modules/YAMLicious.0.0.1/Encode.fs.js";
+import { Config, YAMLElement } from "../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js";
+import { resizearray, string, tryInclude } from "../fable_modules/YAMLicious.0.0.3/Encode.fs.js";
 import { ValidationPackage_decoder, ValidationPackage_encoder } from "./ValidationPackage.js";
 import { singleton, collect, delay, toList } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
-import { YAMLContent_create_27AED5E3 } from "../fable_modules/YAMLicious.0.0.1/YAMLiciousTypes.fs.js";
-import { string as string_1, resizearray as resizearray_1, object } from "../fable_modules/YAMLicious.0.0.1/Decode.fs.js";
+import { YAMLContent_create_27AED5E3 } from "../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js";
+import { string as string_1, resizearray as resizearray_1, object } from "../fable_modules/YAMLicious.0.0.3/Decode.fs.js";
 import { ValidationPackagesConfig } from "../ValidationPackages/ValidationPackagesConfig.js";
 import { unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
-import { read } from "../fable_modules/YAMLicious.0.0.1/Reader.fs.js";
+import { read } from "../fable_modules/YAMLicious.0.0.3/Reader.fs.js";
 import { defaultWhitespace } from "./Encode.js";
-import { write } from "../fable_modules/YAMLicious.0.0.1/Writer.fs.js";
+import { write } from "../fable_modules/YAMLicious.0.0.3/Writer.fs.js";
 
 export function ValidationPackagesConfig_encoder(validationpackage) {
     const objSeq = choose((tupledArg) => {