@nfdi4plants/arctrl 2.0.0-alpha.3 → 2.0.0-alpha.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/ARC.js +178 -21
- package/Contract/ARC.js +9 -1
- package/Contract/Contract.js +3 -0
- package/Contract/Datamap.js +180 -0
- package/Contract/Git.js +3 -0
- package/Core/ArcTypes.js +189 -120
- package/Core/Conversion.js +177 -106
- package/Core/Data.js +119 -0
- package/Core/{Process/DataFile.js → DataFile.js} +3 -3
- package/Core/Helper/Identifier.js +40 -0
- package/Core/Helper/Regex.js +13 -0
- package/Core/OntologyAnnotation.js +28 -6
- package/Core/Process/ColumnIndex.js +13 -3
- package/Core/Process/ProcessInput.js +5 -5
- package/Core/Process/ProcessOutput.js +5 -5
- package/Core/Process/Value.js +1 -1
- package/Core/Table/ArcTable.js +24 -2
- package/Core/Table/ArcTableAux.js +56 -5
- package/Core/Table/ArcTables.js +1 -1
- package/Core/Table/CompositeCell.js +67 -10
- package/Core/Table/CompositeColumn.js +9 -0
- package/Core/Table/CompositeHeader.js +108 -94
- package/Core/Table/DataMap.js +166 -0
- package/FileSystem/DefaultGitattributes.js +3 -0
- package/FileSystem/FileSystemTree.js +18 -4
- package/Json/Assay.js +4 -4
- package/Json/Process/Data.js +56 -18
- package/Json/Process/DataFile.js +5 -5
- package/Json/Process/PropertyValue.js +124 -4
- package/Json/Study.js +4 -4
- package/Json/Table/CompositeCell.js +7 -6
- package/Json/Table/CompositeHeader.js +4 -3
- package/Spreadsheet/AnnotationTable/ArcTable.js +10 -13
- package/Spreadsheet/AnnotationTable/CompositeCell.js +32 -50
- package/Spreadsheet/AnnotationTable/CompositeColumn.js +16 -10
- package/Spreadsheet/AnnotationTable/CompositeHeader.js +290 -135
- package/Spreadsheet/ArcAssay.js +2 -2
- package/Spreadsheet/ArcInvestigation.js +2 -2
- package/Spreadsheet/ArcStudy.js +2 -2
- package/Spreadsheet/DataMap.js +31 -0
- package/Spreadsheet/DataMapTable/DataMapColumn.js +36 -0
- package/Spreadsheet/DataMapTable/DataMapHeader.js +417 -0
- package/Spreadsheet/DataMapTable/DataMapTable.js +98 -0
- package/Spreadsheet/Metadata/Assays.js +2 -2
- package/Spreadsheet/Metadata/SparseTable.js +7 -7
- package/Spreadsheet/Metadata/Study.js +1 -1
- package/Spreadsheet/Template.js +2 -2
- package/Xlsx.js +29 -6
- package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsSpreadsheet.fableproj +9 -3
- package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorksheet.fs +1 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Cell.fs +23 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Cell.fs.js +21 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Row.fs +23 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Row.fs.js +19 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Table.fs +24 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Table.fs.js +15 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Value.fs +70 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Value.fs.js +48 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Workbook.fs +20 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Workbook.fs.js +21 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Worksheet.fs +49 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Worksheet.fs.js +44 -0
- package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Release/netstandard2.0/FsSpreadsheet.AssemblyInfo.fs +3 -3
- package/fable_modules/project_cracked.json +1 -1
- package/package.json +1 -1
- package/Core/Process/Data.js +0 -55
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCell.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCell.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCellsCollection.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCellsCollection.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/CellBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/CellBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/ColumnBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/ColumnBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/DSL.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/DSL.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Expression.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Expression.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Operators.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Operators.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/RowBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/RowBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/SheetBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/SheetBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/TableBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/TableBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Transform.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Transform.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Types.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Types.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/WorkbookBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/WorkbookBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsAddress.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsAddress.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsColumn.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsColumn.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsRow.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsRow.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorkbook.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorkbook.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorksheet.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRange.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRange.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeAddress.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeAddress.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeBase.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeBase.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeColumn.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeColumn.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeRow.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeRow.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/SheetBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/SheetBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTable.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTable.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableField.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableField.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableRow.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableRow.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Debug/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Debug/netstandard2.0/FsSpreadsheet.AssemblyInfo.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Release/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +0 -0
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import { printf, toFail } from "../../fable_modules/fable-library-js.4.16.0/String.js";
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import { singleton, tail, head, isEmpty, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
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import { singleton, ofArray, tryFindIndex, tail, head, isEmpty, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
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import { OntologyAnnotation } from "../../Core/OntologyAnnotation.js";
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import { freeTextFromFsCells, dataFromFsCells, unitizedFromFsCells, termFromFsCells } from "./CompositeCell.js";
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import { ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C } from "../../Core/Helper/Regex.js";
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import { FsCell } from "../../fable_modules/FsSpreadsheet.6.1.2/Cells/FsCell.fs.js";
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import { toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
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import { empty, singleton as singleton_1, append, delay, toList } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
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return f(OntologyAnnotation.create(name));
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return [f(OntologyAnnotation.create(name)), (cells_1) => termFromFsCells(void 0, void 0, cells_1)];
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return [f(OntologyAnnotation.create(name_1, term.TermSourceRef, term.TermAccessionNumber)), (cells_2) => termFromFsCells(1, 2, cells_2)];
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const term_1 = ActivePattern_mergeIDInfo(term1_1.IDSpace, term1_1.LocalID, term2_1.IDSpace, term2_1.LocalID);
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return [f(OntologyAnnotation.create(name_2, term_1.TermSourceRef, term_1.TermAccessionNumber)), (cells_3) => termFromFsCells(2, 1, cells_3)];
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default: {
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const activePatternResult_9 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(head(tail(tail(cellValues))));
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if (activePatternResult_9 != null) {
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if (!isEmpty(tail(tail(tail(cellValues))))) {
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const activePatternResult_10 = ActivePatterns_$007CTANColumnHeader$007C_$007C(head(tail(tail(tail(cellValues)))));
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name_3 = activePatternResult_7;
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term1_2 = activePatternResult_9;
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term2_2 = activePatternResult_10;
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}
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}
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}
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switch (matchResult_3) {
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case 0: {
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const term_2 = ActivePattern_mergeIDInfo(term1_2.IDSpace, term1_2.LocalID, term2_2.IDSpace, term2_2.LocalID);
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return [f(OntologyAnnotation.create(name_3, term_2.TermSourceRef, term_2.TermAccessionNumber)), (cells_4) => unitizedFromFsCells(1, 2, 3, cells_4)];
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}
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default: {
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let matchResult_4, name_4, term1_3, term2_3;
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if (!isEmpty(cellValues)) {
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const activePatternResult_11 = $007CAC$007C_$007C(head(cellValues));
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if (activePatternResult_11 != null) {
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if (!isEmpty(tail(cellValues))) {
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if (ActivePatterns_$007CUnitColumnHeader$007C_$007C(head(tail(cellValues))) != null) {
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if (!isEmpty(tail(tail(cellValues)))) {
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const activePatternResult_13 = ActivePatterns_$007CTANColumnHeader$007C_$007C(head(tail(tail(cellValues))));
|
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if (activePatternResult_13 != null) {
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if (!isEmpty(tail(tail(tail(cellValues))))) {
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const activePatternResult_14 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(head(tail(tail(tail(cellValues)))));
|
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if (activePatternResult_14 != null) {
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|
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if (isEmpty(tail(tail(tail(tail(cellValues)))))) {
|
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matchResult_4 = 0;
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name_4 = activePatternResult_11;
|
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term1_3 = activePatternResult_14;
|
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term2_3 = activePatternResult_13;
|
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}
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else {
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}
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}
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else {
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}
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}
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else {
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|
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}
|
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}
|
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else {
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matchResult_4 = 1;
|
|
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}
|
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}
|
|
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else {
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matchResult_4 = 1;
|
|
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|
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}
|
|
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|
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}
|
|
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|
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else {
|
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|
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matchResult_4 = 1;
|
|
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|
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}
|
|
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249
|
}
|
|
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250
|
else {
|
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|
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|
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|
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matchResult_4 = 1;
|
|
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|
}
|
|
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253
|
}
|
|
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254
|
else {
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|
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|
|
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|
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matchResult_4 = 1;
|
|
151
256
|
}
|
|
152
257
|
}
|
|
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258
|
else {
|
|
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|
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|
|
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|
+
matchResult_4 = 1;
|
|
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|
+
}
|
|
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|
+
switch (matchResult_4) {
|
|
262
|
+
case 0: {
|
|
263
|
+
const term_3 = ActivePattern_mergeIDInfo(term1_3.IDSpace, term1_3.LocalID, term2_3.IDSpace, term2_3.LocalID);
|
|
264
|
+
return [f(OntologyAnnotation.create(name_4, term_3.TermSourceRef, term_3.TermAccessionNumber)), (cells_5) => unitizedFromFsCells(1, 3, 2, cells_5)];
|
|
265
|
+
}
|
|
266
|
+
default:
|
|
267
|
+
return void 0;
|
|
155
268
|
}
|
|
156
269
|
}
|
|
157
|
-
else {
|
|
158
|
-
matchResult_1 = 1;
|
|
159
|
-
}
|
|
160
|
-
}
|
|
161
|
-
else {
|
|
162
|
-
matchResult_1 = 1;
|
|
163
270
|
}
|
|
164
271
|
}
|
|
165
|
-
else {
|
|
166
|
-
matchResult_1 = 1;
|
|
167
|
-
}
|
|
168
272
|
}
|
|
169
|
-
else {
|
|
170
|
-
matchResult_1 = 1;
|
|
171
|
-
}
|
|
172
|
-
}
|
|
173
|
-
else {
|
|
174
|
-
matchResult_1 = 1;
|
|
175
273
|
}
|
|
176
274
|
}
|
|
177
|
-
else {
|
|
178
|
-
matchResult_1 = 1;
|
|
179
|
-
}
|
|
180
|
-
switch (matchResult_1) {
|
|
181
|
-
case 0: {
|
|
182
|
-
const term = ActivePattern_mergeIDInfo(term1.IDSpace, term1.LocalID, term2.IDSpace, term2.LocalID);
|
|
183
|
-
return f(OntologyAnnotation.create(name_1, term.TermSourceRef, term.TermAccessionNumber));
|
|
184
|
-
}
|
|
185
|
-
default:
|
|
186
|
-
return void 0;
|
|
187
|
-
}
|
|
188
275
|
}
|
|
189
276
|
}
|
|
190
277
|
}
|
|
@@ -235,18 +322,48 @@ export function ActivePattern_$007CComponent$007C_$007C(cells) {
|
|
|
235
322
|
|
|
236
323
|
export function ActivePattern_$007CInput$007C_$007C(cells) {
|
|
237
324
|
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
238
|
-
let matchResult, ioType;
|
|
325
|
+
let matchResult, cols, ioType;
|
|
239
326
|
if (!isEmpty(cellValues)) {
|
|
240
327
|
const activePatternResult = ActivePatterns_$007CInputColumnHeader$007C_$007C(head(cellValues));
|
|
241
328
|
if (activePatternResult != null) {
|
|
242
|
-
|
|
243
|
-
|
|
244
|
-
|
|
329
|
+
matchResult = 0;
|
|
330
|
+
cols = tail(cellValues);
|
|
331
|
+
ioType = activePatternResult;
|
|
332
|
+
}
|
|
333
|
+
else {
|
|
334
|
+
matchResult = 1;
|
|
335
|
+
}
|
|
336
|
+
}
|
|
337
|
+
else {
|
|
338
|
+
matchResult = 1;
|
|
339
|
+
}
|
|
340
|
+
switch (matchResult) {
|
|
341
|
+
case 0: {
|
|
342
|
+
const matchValue = IOType.ofString(ioType);
|
|
343
|
+
if (matchValue.tag === 2) {
|
|
344
|
+
const format = map_1((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols));
|
|
345
|
+
const selectorFormat = map_1((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols));
|
|
346
|
+
return [new CompositeHeader(11, [new IOType(2, [])]), (cells_1) => dataFromFsCells(format, selectorFormat, cells_1)];
|
|
245
347
|
}
|
|
246
348
|
else {
|
|
247
|
-
|
|
349
|
+
return [new CompositeHeader(11, [matchValue]), freeTextFromFsCells];
|
|
248
350
|
}
|
|
249
351
|
}
|
|
352
|
+
default:
|
|
353
|
+
return void 0;
|
|
354
|
+
}
|
|
355
|
+
}
|
|
356
|
+
|
|
357
|
+
export function ActivePattern_$007COutput$007C_$007C(cells) {
|
|
358
|
+
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
359
|
+
let matchResult, cols, ioType;
|
|
360
|
+
if (!isEmpty(cellValues)) {
|
|
361
|
+
const activePatternResult = ActivePatterns_$007COutputColumnHeader$007C_$007C(head(cellValues));
|
|
362
|
+
if (activePatternResult != null) {
|
|
363
|
+
matchResult = 0;
|
|
364
|
+
cols = tail(cellValues);
|
|
365
|
+
ioType = activePatternResult;
|
|
366
|
+
}
|
|
250
367
|
else {
|
|
251
368
|
matchResult = 1;
|
|
252
369
|
}
|
|
@@ -255,22 +372,31 @@ export function ActivePattern_$007CInput$007C_$007C(cells) {
|
|
|
255
372
|
matchResult = 1;
|
|
256
373
|
}
|
|
257
374
|
switch (matchResult) {
|
|
258
|
-
case 0:
|
|
259
|
-
|
|
375
|
+
case 0: {
|
|
376
|
+
const matchValue = IOType.ofString(ioType);
|
|
377
|
+
if (matchValue.tag === 2) {
|
|
378
|
+
const format = map_1((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols));
|
|
379
|
+
const selectorFormat = map_1((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols));
|
|
380
|
+
return [new CompositeHeader(12, [new IOType(2, [])]), (cells_1) => dataFromFsCells(format, selectorFormat, cells_1)];
|
|
381
|
+
}
|
|
382
|
+
else {
|
|
383
|
+
return [new CompositeHeader(12, [matchValue]), freeTextFromFsCells];
|
|
384
|
+
}
|
|
385
|
+
}
|
|
260
386
|
default:
|
|
261
387
|
return void 0;
|
|
262
388
|
}
|
|
263
389
|
}
|
|
264
390
|
|
|
265
|
-
export function ActivePattern_$
|
|
391
|
+
export function ActivePattern_$007CComment$007C_$007C(cells) {
|
|
266
392
|
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
267
|
-
let matchResult,
|
|
393
|
+
let matchResult, key;
|
|
268
394
|
if (!isEmpty(cellValues)) {
|
|
269
|
-
const activePatternResult = ActivePatterns_$
|
|
395
|
+
const activePatternResult = ActivePatterns_$007CComment$007C_$007C(head(cellValues));
|
|
270
396
|
if (activePatternResult != null) {
|
|
271
397
|
if (isEmpty(tail(cellValues))) {
|
|
272
398
|
matchResult = 0;
|
|
273
|
-
|
|
399
|
+
key = activePatternResult;
|
|
274
400
|
}
|
|
275
401
|
else {
|
|
276
402
|
matchResult = 1;
|
|
@@ -285,97 +411,109 @@ export function ActivePattern_$007COutput$007C_$007C(cells) {
|
|
|
285
411
|
}
|
|
286
412
|
switch (matchResult) {
|
|
287
413
|
case 0:
|
|
288
|
-
return new CompositeHeader(
|
|
414
|
+
return [new CompositeHeader(14, [key]), freeTextFromFsCells];
|
|
289
415
|
default:
|
|
290
416
|
return void 0;
|
|
291
417
|
}
|
|
292
418
|
}
|
|
293
419
|
|
|
420
|
+
export function ActivePattern_$007CProtocolType$007C_$007C(cells) {
|
|
421
|
+
const activePatternResult = ActivePattern_$007CTerm$007C_$007C((s) => {
|
|
422
|
+
if (s === "Protocol Type") {
|
|
423
|
+
return s;
|
|
424
|
+
}
|
|
425
|
+
else {
|
|
426
|
+
return void 0;
|
|
427
|
+
}
|
|
428
|
+
}, (_arg) => (new CompositeHeader(4, [])), cells);
|
|
429
|
+
if (activePatternResult != null) {
|
|
430
|
+
const r = activePatternResult;
|
|
431
|
+
return r;
|
|
432
|
+
}
|
|
433
|
+
else {
|
|
434
|
+
return void 0;
|
|
435
|
+
}
|
|
436
|
+
}
|
|
437
|
+
|
|
294
438
|
export function ActivePattern_$007CProtocolHeader$007C_$007C(cells) {
|
|
295
439
|
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
296
440
|
let matchResult;
|
|
297
441
|
if (!isEmpty(cellValues)) {
|
|
298
442
|
switch (head(cellValues)) {
|
|
299
|
-
case "Protocol Type": {
|
|
300
|
-
matchResult = 0;
|
|
301
|
-
break;
|
|
302
|
-
}
|
|
303
443
|
case "Protocol REF": {
|
|
304
444
|
if (isEmpty(tail(cellValues))) {
|
|
305
|
-
matchResult =
|
|
445
|
+
matchResult = 0;
|
|
306
446
|
}
|
|
307
447
|
else {
|
|
308
|
-
matchResult =
|
|
448
|
+
matchResult = 6;
|
|
309
449
|
}
|
|
310
450
|
break;
|
|
311
451
|
}
|
|
312
452
|
case "Protocol Description": {
|
|
313
453
|
if (isEmpty(tail(cellValues))) {
|
|
314
|
-
matchResult =
|
|
454
|
+
matchResult = 1;
|
|
315
455
|
}
|
|
316
456
|
else {
|
|
317
|
-
matchResult =
|
|
457
|
+
matchResult = 6;
|
|
318
458
|
}
|
|
319
459
|
break;
|
|
320
460
|
}
|
|
321
461
|
case "Protocol Uri": {
|
|
322
462
|
if (isEmpty(tail(cellValues))) {
|
|
323
|
-
matchResult =
|
|
463
|
+
matchResult = 2;
|
|
324
464
|
}
|
|
325
465
|
else {
|
|
326
|
-
matchResult =
|
|
466
|
+
matchResult = 6;
|
|
327
467
|
}
|
|
328
468
|
break;
|
|
329
469
|
}
|
|
330
470
|
case "Protocol Version": {
|
|
331
471
|
if (isEmpty(tail(cellValues))) {
|
|
332
|
-
matchResult =
|
|
472
|
+
matchResult = 3;
|
|
333
473
|
}
|
|
334
474
|
else {
|
|
335
|
-
matchResult =
|
|
475
|
+
matchResult = 6;
|
|
336
476
|
}
|
|
337
477
|
break;
|
|
338
478
|
}
|
|
339
479
|
case "Performer": {
|
|
340
480
|
if (isEmpty(tail(cellValues))) {
|
|
341
|
-
matchResult =
|
|
481
|
+
matchResult = 4;
|
|
342
482
|
}
|
|
343
483
|
else {
|
|
344
|
-
matchResult =
|
|
484
|
+
matchResult = 6;
|
|
345
485
|
}
|
|
346
486
|
break;
|
|
347
487
|
}
|
|
348
488
|
case "Date": {
|
|
349
489
|
if (isEmpty(tail(cellValues))) {
|
|
350
|
-
matchResult =
|
|
490
|
+
matchResult = 5;
|
|
351
491
|
}
|
|
352
492
|
else {
|
|
353
|
-
matchResult =
|
|
493
|
+
matchResult = 6;
|
|
354
494
|
}
|
|
355
495
|
break;
|
|
356
496
|
}
|
|
357
497
|
default:
|
|
358
|
-
matchResult =
|
|
498
|
+
matchResult = 6;
|
|
359
499
|
}
|
|
360
500
|
}
|
|
361
501
|
else {
|
|
362
|
-
matchResult =
|
|
502
|
+
matchResult = 6;
|
|
363
503
|
}
|
|
364
504
|
switch (matchResult) {
|
|
365
505
|
case 0:
|
|
366
|
-
return new CompositeHeader(
|
|
506
|
+
return [new CompositeHeader(8, []), freeTextFromFsCells];
|
|
367
507
|
case 1:
|
|
368
|
-
return new CompositeHeader(
|
|
508
|
+
return [new CompositeHeader(5, []), freeTextFromFsCells];
|
|
369
509
|
case 2:
|
|
370
|
-
return new CompositeHeader(
|
|
510
|
+
return [new CompositeHeader(6, []), freeTextFromFsCells];
|
|
371
511
|
case 3:
|
|
372
|
-
return new CompositeHeader(
|
|
512
|
+
return [new CompositeHeader(7, []), freeTextFromFsCells];
|
|
373
513
|
case 4:
|
|
374
|
-
return new CompositeHeader(
|
|
514
|
+
return [new CompositeHeader(9, []), freeTextFromFsCells];
|
|
375
515
|
case 5:
|
|
376
|
-
return new CompositeHeader(
|
|
377
|
-
case 6:
|
|
378
|
-
return new CompositeHeader(10, []);
|
|
516
|
+
return [new CompositeHeader(10, []), freeTextFromFsCells];
|
|
379
517
|
default:
|
|
380
518
|
return void 0;
|
|
381
519
|
}
|
|
@@ -398,7 +536,7 @@ export function ActivePattern_$007CFreeText$007C_$007C(cells) {
|
|
|
398
536
|
}
|
|
399
537
|
switch (matchResult) {
|
|
400
538
|
case 0:
|
|
401
|
-
return new CompositeHeader(13, [text]);
|
|
539
|
+
return [new CompositeHeader(13, [text]), freeTextFromFsCells];
|
|
402
540
|
default:
|
|
403
541
|
return void 0;
|
|
404
542
|
}
|
|
@@ -441,19 +579,33 @@ export function fromFsCells(cells) {
|
|
|
441
579
|
return o;
|
|
442
580
|
}
|
|
443
581
|
else {
|
|
444
|
-
const activePatternResult_6 = ActivePattern_$
|
|
582
|
+
const activePatternResult_6 = ActivePattern_$007CProtocolType$007C_$007C(cells);
|
|
445
583
|
if (activePatternResult_6 != null) {
|
|
446
|
-
const
|
|
447
|
-
return
|
|
584
|
+
const pt = activePatternResult_6;
|
|
585
|
+
return pt;
|
|
448
586
|
}
|
|
449
587
|
else {
|
|
450
|
-
const activePatternResult_7 = ActivePattern_$
|
|
588
|
+
const activePatternResult_7 = ActivePattern_$007CProtocolHeader$007C_$007C(cells);
|
|
451
589
|
if (activePatternResult_7 != null) {
|
|
452
|
-
const
|
|
453
|
-
return
|
|
590
|
+
const ph = activePatternResult_7;
|
|
591
|
+
return ph;
|
|
454
592
|
}
|
|
455
593
|
else {
|
|
456
|
-
|
|
594
|
+
const activePatternResult_8 = ActivePattern_$007CComment$007C_$007C(cells);
|
|
595
|
+
if (activePatternResult_8 != null) {
|
|
596
|
+
const c_2 = activePatternResult_8;
|
|
597
|
+
return c_2;
|
|
598
|
+
}
|
|
599
|
+
else {
|
|
600
|
+
const activePatternResult_9 = ActivePattern_$007CFreeText$007C_$007C(cells);
|
|
601
|
+
if (activePatternResult_9 != null) {
|
|
602
|
+
const ft = activePatternResult_9;
|
|
603
|
+
return ft;
|
|
604
|
+
}
|
|
605
|
+
else {
|
|
606
|
+
return toFail(printf("Could not parse header group %O"))(cells);
|
|
607
|
+
}
|
|
608
|
+
}
|
|
457
609
|
}
|
|
458
610
|
}
|
|
459
611
|
}
|
|
@@ -465,7 +617,10 @@ export function fromFsCells(cells) {
|
|
|
465
617
|
}
|
|
466
618
|
|
|
467
619
|
export function toFsCells(hasUnit, header) {
|
|
468
|
-
if (header.
|
|
620
|
+
if (header.IsDataColumn) {
|
|
621
|
+
return ofArray([new FsCell(toString(header)), new FsCell("Data Format"), new FsCell("Data Selector Format")]);
|
|
622
|
+
}
|
|
623
|
+
else if (header.IsSingleColumn) {
|
|
469
624
|
return singleton(new FsCell(toString(header)));
|
|
470
625
|
}
|
|
471
626
|
else if (header.IsTermColumn) {
|
package/Spreadsheet/ArcAssay.js
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.
|
|
1
|
+
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorksheet.fs.js";
|
|
2
2
|
import { iterate, isEmpty as isEmpty_1, choose, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
|
|
3
3
|
import { SparseRowModule_tryGetValueAt, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
|
|
4
4
|
import { fromRows as fromRows_1, toRows as toRows_1 } from "./Metadata/Assays.js";
|
|
@@ -10,7 +10,7 @@ import { ArcAssay } from "../Core/ArcTypes.js";
|
|
|
10
10
|
import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
|
|
11
11
|
import { defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
|
|
12
12
|
import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
|
|
13
|
-
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.
|
|
13
|
+
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorkbook.fs.js";
|
|
14
14
|
|
|
15
15
|
export function toMetadataSheet(assay) {
|
|
16
16
|
let assay_1;
|
|
@@ -17,8 +17,8 @@ import { toRows as toRows_4, fromRows as fromRows_4 } from "./Metadata/Study.js"
|
|
|
17
17
|
import { iterateIndexed, map as map_1, toList, empty as empty_1, collect, singleton, append as append_1, delay } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
|
|
18
18
|
import { tryFind, ofList } from "../fable_modules/fable-library-js.4.16.0/Map.js";
|
|
19
19
|
import { printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
|
|
20
|
-
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.
|
|
21
|
-
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.
|
|
20
|
+
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorksheet.fs.js";
|
|
21
|
+
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorkbook.fs.js";
|
|
22
22
|
|
|
23
23
|
export class InvestigationInfo extends Record {
|
|
24
24
|
constructor(Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Comments) {
|