@nfdi4plants/arctrl 2.0.0-alpha.3 → 2.0.0-alpha.5

package/Core/Conversion.js

@@ -1,9 +1,9 @@
 import { remove, toFail, endsWith, printf, toText } from "../fable_modules/fable-library-js.4.16.0/String.js";
 import { Comment$ } from "./Comment.js";
 import { zip as zip_1, fold, empty as empty_1, singleton as singleton_1, append, delay, map as map_1, filter, toList, indexed, tryPick, choose } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { unwrap, value as value_9, map, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { unwrap, value as value_10, map, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
 import { Option_fromValueWithDefault, ResizeArray_filter } from "./Helper/Collections.js";
-import { Value as Value_1 } from "./Process/Value.js";
+import { Value as Value_2 } from "./Process/Value.js";
 import { Component_create_4208F9FC } from "./Process/Component.js";
 import { ProtocolParameter } from "./Process/ProtocolParameter.js";
 import { ProcessParameterValue } from "./Process/ProcessParameterValue.js";
@@ -12,13 +12,13 @@ import { Factor } from "./Process/Factor.js";
 import { toString } from "../fable_modules/fable-library-js.4.16.0/Types.js";
 import { MaterialAttributeValue_create_BE8DE56 } from "./Process/MaterialAttributeValue.js";
 import { MaterialAttribute_create_A220A8A } from "./Process/MaterialAttribute.js";
-import { ProcessInput_getCharacteristicValues_5B3D5BA9, ProcessInput__isMaterial, ProcessInput__isData, ProcessInput_setCharacteristicValues, ProcessInput__get_Name, ProcessInput__isSource, ProcessInput__isSample, ProcessInput, ProcessInput_createDerivedData_Z721C83C5, ProcessInput_createRawData_Z721C83C5, ProcessInput_createImageFile_Z721C83C5, ProcessInput_createMaterial_4452CB4C, ProcessInput_createSample_Z598187B7, ProcessInput_createSource_Z5E00540E } from "./Process/ProcessInput.js";
-import { ProcessOutput_getFactorValues_Z42C11600, ProcessOutput__isMaterial, ProcessOutput__isData, ProcessOutput_setFactorValues, ProcessOutput__get_Name, ProcessOutput__isSample, ProcessOutput, ProcessOutput_createDerivedData_Z721C83C5, ProcessOutput_createRawData_Z721C83C5, ProcessOutput_createImageFile_Z721C83C5, ProcessOutput_createMaterial_4452CB4C, ProcessOutput_createSample_Z598187B7 } from "./Process/ProcessOutput.js";
+import { ProcessInput_getCharacteristicValues_5B3D5BA9, ProcessInput__isMaterial, ProcessInput__isData, ProcessInput_setCharacteristicValues, ProcessInput__get_Name, ProcessInput__isSource, ProcessInput__isSample, ProcessInput, ProcessInput_createRawData_Z721C83C5, ProcessInput_createMaterial_4452CB4C, ProcessInput_createSample_Z598187B7, ProcessInput_createSource_Z5E00540E } from "./Process/ProcessInput.js";
+import { ProcessOutput_getFactorValues_Z42C11600, ProcessOutput__isMaterial, ProcessOutput__isData, ProcessOutput_setFactorValues, ProcessOutput__get_Name, ProcessOutput__isSample, ProcessOutput, ProcessOutput_createRawData_Z721C83C5, ProcessOutput_createMaterial_4452CB4C, ProcessOutput_createSample_Z598187B7 } from "./Process/ProcessOutput.js";
 import { CompositeCell } from "./Table/CompositeCell.js";
+import { OntologyAnnotation } from "./OntologyAnnotation.js";
 import { safeHash, equals, disposeSafe, getEnumerator, comparePrimitives, arrayHash, equalArrays, stringHash, int32ToString } from "../fable_modules/fable-library-js.4.16.0/Util.js";
 import { IOType, CompositeHeader } from "./Table/CompositeHeader.js";
 import { ActivePatterns_$007CRegex$007C_$007C } from "./Helper/Regex.js";
-import { OntologyAnnotation } from "./OntologyAnnotation.js";
 import { ARCtrl_Process_Component__Component_TryGetColumnIndex, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex, tryGetFactorColumnIndex, tryGetCharacteristicColumnIndex, tryGetComponentIndex, tryGetParameterColumnIndex, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4 } from "./Process/ColumnIndex.js";
 import { getItemFromDict } from "../fable_modules/fable-library-js.4.16.0/MapUtil.js";
 import { initialize, zip, append as append_1, sortBy, head, tryPick as tryPick_1, collect, mapIndexed, item, length, map as map_2, empty, ofArray, isEmpty, singleton, choose as choose_1 } from "../fable_modules/fable-library-js.4.16.0/List.js";
@@ -68,7 +68,7 @@ export function Person_getSourceAssayIdentifiersFromComments(person) {
 export function Person_removeSourceAssayComments(person) {
     return ResizeArray_filter((c) => {
         if (c.Name != null) {
-            return !(value_9(c.Name).indexOf(Person_AssayIdentifierPrefix) === 0);
+            return !(value_10(c.Name).indexOf(Person_AssayIdentifierPrefix) === 0);
         }
         else {
             return false;
@@ -80,7 +80,7 @@ export function Person_setOrcidFromComments(person) {
     const person_1 = person.Copy();
     const isOrcidComment = (c) => {
         if (c.Name != null) {
-            return endsWith(value_9(c.Name).toLocaleUpperCase(), Person_orcidKey);
+            return endsWith(value_10(c.Name).toLocaleUpperCase(), Person_orcidKey);
         }
         else {
             return false;
@@ -118,11 +118,23 @@ export function Person_setCommentFromORCID(person) {
 export function JsonTypes_valueOfCell(value) {
     switch (value.tag) {
         case 0:
-            return [new Value_1(0, [value.fields[0]]), void 0];
+            if (value.fields[0].isEmpty()) {
+                return [void 0, void 0];
+            }
+            else {
+                return [new Value_2(0, [value.fields[0]]), void 0];
+            }
         case 2:
-            return [Value_1.fromString(value.fields[0]), value.fields[1]];
+            return [(value.fields[0] === "") ? void 0 : Value_2.fromString(value.fields[0]), value.fields[1].isEmpty() ? void 0 : value.fields[1]];
+        case 3:
+            throw new Error("Data cell should not be parsed to isa value");
         default:
-            return [Value_1.fromString(value.fields[0]), void 0];
+            if (value.fields[0] === "") {
+                return [void 0, void 0];
+            }
+            else {
+                return [Value_2.fromString(value.fields[0]), void 0];
+            }
     }
 }
 
@@ -131,7 +143,7 @@ export function JsonTypes_valueOfCell(value) {
  */
 export function JsonTypes_composeComponent(header, value) {
     const patternInput = JsonTypes_valueOfCell(value);
-    return Component_create_4208F9FC(patternInput[0], unwrap(patternInput[1]), header.ToTerm());
+    return Component_create_4208F9FC(unwrap(patternInput[0]), unwrap(patternInput[1]), header.ToTerm());
 }
 
 /**
@@ -140,7 +152,7 @@ export function JsonTypes_composeComponent(header, value) {
 export function JsonTypes_composeParameterValue(header, value) {
     const patternInput = JsonTypes_valueOfCell(value);
     const p = ProtocolParameter.create(void 0, header.ToTerm());
-    return ProcessParameterValue.create(p, patternInput[0], unwrap(patternInput[1]));
+    return ProcessParameterValue.create(p, unwrap(patternInput[0]), unwrap(patternInput[1]));
 }
 
 /**
@@ -148,7 +160,7 @@ export function JsonTypes_composeParameterValue(header, value) {
  */
 export function JsonTypes_composeFactorValue(header, value) {
     const patternInput = JsonTypes_valueOfCell(value);
-    return FactorValue_create_29259B2C(void 0, Factor.create(toString(header), header.ToTerm()), patternInput[0], unwrap(patternInput[1]));
+    return FactorValue_create_29259B2C(void 0, Factor.create(toString(header), header.ToTerm()), unwrap(patternInput[0]), unwrap(patternInput[1]));
 }
 
 /**
@@ -156,7 +168,7 @@ export function JsonTypes_composeFactorValue(header, value) {
  */
 export function JsonTypes_composeCharacteristicValue(header, value) {
     const patternInput = JsonTypes_valueOfCell(value);
-    return MaterialAttributeValue_create_BE8DE56(void 0, MaterialAttribute_create_A220A8A(void 0, header.ToTerm()), patternInput[0], unwrap(patternInput[1]));
+    return MaterialAttributeValue_create_BE8DE56(void 0, MaterialAttribute_create_A220A8A(void 0, header.ToTerm()), unwrap(patternInput[0]), unwrap(patternInput[1]));
 }
 
 /**
@@ -174,28 +186,20 @@ export function JsonTypes_composeProcessInput(header, value) {
                 matchResult = 1;
                 break;
             }
-            case 5: {
+            case 3: {
                 matchResult = 2;
                 break;
             }
-            case 4: {
-                matchResult = 3;
-                break;
-            }
             case 2: {
-                matchResult = 4;
-                break;
-            }
-            case 3: {
-                matchResult = 5;
+                matchResult = 3;
                 break;
             }
             default:
-                matchResult = 6;
+                matchResult = 4;
         }
     }
     else {
-        matchResult = 6;
+        matchResult = 4;
     }
     switch (matchResult) {
         case 0:
@@ -205,11 +209,7 @@ export function JsonTypes_composeProcessInput(header, value) {
         case 2:
             return ProcessInput_createMaterial_4452CB4C(toString(value));
         case 3:
-            return ProcessInput_createImageFile_Z721C83C5(toString(value));
-        case 4:
             return ProcessInput_createRawData_Z721C83C5(toString(value));
-        case 5:
-            return ProcessInput_createDerivedData_Z721C83C5(toString(value));
         default:
             return toFail(printf("Could not parse input header %O"))(header);
     }
@@ -226,28 +226,20 @@ export function JsonTypes_composeProcessOutput(header, value) {
                 matchResult = 0;
                 break;
             }
-            case 5: {
+            case 3: {
                 matchResult = 1;
                 break;
             }
-            case 4: {
-                matchResult = 2;
-                break;
-            }
             case 2: {
-                matchResult = 3;
-                break;
-            }
-            case 3: {
-                matchResult = 4;
+                matchResult = 2;
                 break;
             }
             default:
-                matchResult = 5;
+                matchResult = 3;
         }
     }
     else {
-        matchResult = 5;
+        matchResult = 3;
     }
     switch (matchResult) {
         case 0:
@@ -255,11 +247,7 @@ export function JsonTypes_composeProcessOutput(header, value) {
         case 1:
             return ProcessOutput_createMaterial_4452CB4C(toString(value));
         case 2:
-            return ProcessOutput_createImageFile_Z721C83C5(toString(value));
-        case 3:
             return ProcessOutput_createRawData_Z721C83C5(toString(value));
-        case 4:
-            return ProcessOutput_createDerivedData_Z721C83C5(toString(value));
         default:
             return toFail(printf("Could not parse output header %O"))(header);
     }
@@ -269,68 +257,112 @@ export function JsonTypes_composeProcessOutput(header, value) {
  * Convert an ISA Value and Unit tuple to a CompositeCell
  */
 export function JsonTypes_cellOfValue(value, unit) {
-    const value_2 = defaultArg(value, new Value_1(3, [""]));
+    const value_2 = defaultArg(value, new Value_2(3, [""]));
+    let matchResult, oa, text, name, u, f, u_1, f_1, i, u_2, i_1;
     switch (value_2.tag) {
-        case 3:
-            if (unit != null) {
-                const u = unit;
-                return new CompositeCell(2, [value_2.fields[0], u]);
+        case 3: {
+            if (value_2.fields[0] === "") {
+                if (unit != null) {
+                    matchResult = 3;
+                    name = value_2.fields[0];
+                    u = unit;
+                }
+                else {
+                    matchResult = 1;
+                }
+            }
+            else if (unit != null) {
+                matchResult = 3;
+                name = value_2.fields[0];
+                u = unit;
             }
             else {
-                return new CompositeCell(1, [value_2.fields[0]]);
+                matchResult = 2;
+                text = value_2.fields[0];
             }
-        case 2:
+            break;
+        }
+        case 2: {
             if (unit == null) {
-                return new CompositeCell(1, [value_2.fields[0].toString()]);
+                matchResult = 5;
+                f_1 = value_2.fields[0];
             }
             else {
-                const u_1 = unit;
-                return new CompositeCell(2, [value_2.fields[0].toString(), u_1]);
+                matchResult = 4;
+                f = value_2.fields[0];
+                u_1 = unit;
             }
-        case 1:
+            break;
+        }
+        case 1: {
             if (unit == null) {
-                return new CompositeCell(1, [int32ToString(value_2.fields[0])]);
+                matchResult = 7;
+                i_1 = value_2.fields[0];
             }
             else {
-                const u_2 = unit;
-                return new CompositeCell(2, [int32ToString(value_2.fields[0]), u_2]);
+                matchResult = 6;
+                i = value_2.fields[0];
+                u_2 = unit;
             }
+            break;
+        }
         default:
             if (unit == null) {
-                return new CompositeCell(0, [value_2.fields[0]]);
+                matchResult = 0;
+                oa = value_2.fields[0];
             }
             else {
-                return toFail(printf("Could not parse value %O with unit %O"))(value_2)(unit);
+                matchResult = 8;
             }
     }
+    switch (matchResult) {
+        case 0:
+            return new CompositeCell(0, [oa]);
+        case 1:
+            return new CompositeCell(0, [new OntologyAnnotation()]);
+        case 2:
+            return new CompositeCell(0, [new OntologyAnnotation(text)]);
+        case 3:
+            return new CompositeCell(2, [name, u]);
+        case 4:
+            return new CompositeCell(2, [f.toString(), u_1]);
+        case 5:
+            return new CompositeCell(2, [f_1.toString(), new OntologyAnnotation()]);
+        case 6:
+            return new CompositeCell(2, [int32ToString(i), u_2]);
+        case 7:
+            return new CompositeCell(2, [int32ToString(i_1), new OntologyAnnotation()]);
+        default:
+            return toFail(printf("Could not parse value %O with unit %O"))(value_2)(unit);
+    }
 }
 
 /**
  * Convert an ISA Component to a CompositeHeader and Cell tuple
  */
 export function JsonTypes_decomposeComponent(c) {
-    return [new CompositeHeader(0, [value_9(c.ComponentType)]), JsonTypes_cellOfValue(c.ComponentValue, c.ComponentUnit)];
+    return [new CompositeHeader(0, [value_10(c.ComponentType)]), JsonTypes_cellOfValue(c.ComponentValue, c.ComponentUnit)];
 }
 
 /**
  * Convert an ISA ProcessParameterValue to a CompositeHeader and Cell tuple
  */
 export function JsonTypes_decomposeParameterValue(ppv) {
-    return [new CompositeHeader(3, [value_9(value_9(ppv.Category).ParameterName)]), JsonTypes_cellOfValue(ppv.Value, ppv.Unit)];
+    return [new CompositeHeader(3, [value_10(value_10(ppv.Category).ParameterName)]), JsonTypes_cellOfValue(ppv.Value, ppv.Unit)];
 }
 
 /**
  * Convert an ISA FactorValue to a CompositeHeader and Cell tuple
  */
 export function JsonTypes_decomposeFactorValue(fv) {
-    return [new CompositeHeader(2, [value_9(value_9(fv.Category).FactorType)]), JsonTypes_cellOfValue(fv.Value, fv.Unit)];
+    return [new CompositeHeader(2, [value_10(value_10(fv.Category).FactorType)]), JsonTypes_cellOfValue(fv.Value, fv.Unit)];
 }
 
 /**
  * Convert an ISA MaterialAttributeValue to a CompositeHeader and Cell tuple
  */
 export function JsonTypes_decomposeCharacteristicValue(cv) {
-    return [new CompositeHeader(1, [value_9(value_9(cv.Category).CharacteristicType)]), JsonTypes_cellOfValue(cv.Value, cv.Unit)];
+    return [new CompositeHeader(1, [value_10(value_10(cv.Category).CharacteristicType)]), JsonTypes_cellOfValue(cv.Value, cv.Unit)];
 }
 
 /**
@@ -341,17 +373,17 @@ export function JsonTypes_decomposeProcessInput(pi) {
         case 1:
             return [new CompositeHeader(11, [new IOType(1, [])]), new CompositeCell(1, [defaultArg(pi.fields[0].Name, "")])];
         case 3:
-            return [new CompositeHeader(11, [new IOType(5, [])]), new CompositeCell(1, [defaultArg(pi.fields[0].Name, "")])];
+            return [new CompositeHeader(11, [new IOType(3, [])]), new CompositeCell(1, [defaultArg(pi.fields[0].Name, "")])];
         case 2: {
             const d = pi.fields[0];
-            const dataType = value_9(d.DataType);
+            const dataType = value_10(d.DataType);
             switch (dataType.tag) {
                 case 0:
                     return [new CompositeHeader(11, [new IOType(2, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
                 case 1:
-                    return [new CompositeHeader(11, [new IOType(3, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
+                    return [new CompositeHeader(11, [new IOType(2, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
                 default:
-                    return [new CompositeHeader(11, [new IOType(4, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
+                    return [new CompositeHeader(11, [new IOType(2, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
             }
         }
         default:
@@ -365,17 +397,17 @@ export function JsonTypes_decomposeProcessInput(pi) {
 export function JsonTypes_decomposeProcessOutput(po) {
     switch (po.tag) {
         case 2:
-            return [new CompositeHeader(12, [new IOType(5, [])]), new CompositeCell(1, [defaultArg(po.fields[0].Name, "")])];
+            return [new CompositeHeader(12, [new IOType(3, [])]), new CompositeCell(1, [defaultArg(po.fields[0].Name, "")])];
         case 1: {
             const d = po.fields[0];
-            const dataType = value_9(d.DataType);
+            const dataType = value_10(d.DataType);
             switch (dataType.tag) {
                 case 0:
                     return [new CompositeHeader(12, [new IOType(2, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
                 case 1:
-                    return [new CompositeHeader(12, [new IOType(3, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
+                    return [new CompositeHeader(12, [new IOType(2, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
                 default:
-                    return [new CompositeHeader(12, [new IOType(4, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
+                    return [new CompositeHeader(12, [new IOType(2, [])]), new CompositeCell(1, [defaultArg(d.Name, "")])];
             }
         }
         default:
@@ -423,7 +455,7 @@ export function JsonTypes_decomposeTechnologyPlatform(name) {
 }
 
 /**
- * If the headers of a node depict a component, returns a function for parsing the values of the matrix to the values of this component
+ * If the given headers depict a component, returns a function for parsing the values of the matrix to the values of this component
  */
 export function ProcessParsing_tryComponentGetter(generalI, valueI, valueHeader) {
     if (valueHeader.tag === 0) {
@@ -437,7 +469,7 @@ export function ProcessParsing_tryComponentGetter(generalI, valueI, valueHeader)
 }
 
 /**
- * If the headers of a node depict a protocolType, returns a function for parsing the values of the matrix to the values of this type
+ * If the given headers depict a parameter, returns a function for parsing the values of the matrix to the values of this type
  */
 export function ProcessParsing_tryParameterGetter(generalI, valueI, valueHeader) {
     if (valueHeader.tag === 3) {
@@ -449,6 +481,9 @@ export function ProcessParsing_tryParameterGetter(generalI, valueI, valueHeader)
     }
 }
 
+/**
+ * If the given headers depict a factor, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryFactorGetter(generalI, valueI, valueHeader) {
     if (valueHeader.tag === 2) {
         const cat = new CompositeHeader(2, [ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0])]);
@@ -459,6 +494,9 @@ export function ProcessParsing_tryFactorGetter(generalI, valueI, valueHeader) {
     }
 }
 
+/**
+ * If the given headers depict a protocolType, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryCharacteristicGetter(generalI, valueI, valueHeader) {
     if (valueHeader.tag === 1) {
         const cat = new CompositeHeader(1, [ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0])]);
@@ -470,7 +508,7 @@ export function ProcessParsing_tryCharacteristicGetter(generalI, valueI, valueHe
 }
 
 /**
- * If the headers of a node depict a protocolType, returns a function for parsing the values of the matrix to the values of this type
+ * If the given headers depict a protocolType, returns a function for parsing the values of the matrix to the values of this type
  */
 export function ProcessParsing_tryGetProtocolTypeGetter(generalI, header) {
     if (header.tag === 4) {
@@ -481,6 +519,9 @@ export function ProcessParsing_tryGetProtocolTypeGetter(generalI, header) {
     }
 }
 
+/**
+ * If the given headers depict a protocolREF, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryGetProtocolREFGetter(generalI, header) {
     if (header.tag === 8) {
         return (matrix) => ((i) => getItemFromDict(matrix, [generalI, i]).AsFreeText);
@@ -490,6 +531,9 @@ export function ProcessParsing_tryGetProtocolREFGetter(generalI, header) {
     }
 }
 
+/**
+ * If the given headers depict a protocolDescription, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryGetProtocolDescriptionGetter(generalI, header) {
     if (header.tag === 5) {
         return (matrix) => ((i) => getItemFromDict(matrix, [generalI, i]).AsFreeText);
@@ -499,6 +543,9 @@ export function ProcessParsing_tryGetProtocolDescriptionGetter(generalI, header)
     }
 }
 
+/**
+ * If the given headers depict a protocolURI, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryGetProtocolURIGetter(generalI, header) {
     if (header.tag === 6) {
         return (matrix) => ((i) => getItemFromDict(matrix, [generalI, i]).AsFreeText);
@@ -508,6 +555,9 @@ export function ProcessParsing_tryGetProtocolURIGetter(generalI, header) {
     }
 }
 
+/**
+ * If the given headers depict a protocolVersion, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryGetProtocolVersionGetter(generalI, header) {
     if (header.tag === 7) {
         return (matrix) => ((i) => getItemFromDict(matrix, [generalI, i]).AsFreeText);
@@ -517,6 +567,9 @@ export function ProcessParsing_tryGetProtocolVersionGetter(generalI, header) {
     }
 }
 
+/**
+ * If the given headers depict an input, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryGetInputGetter(generalI, header) {
     if (header.tag === 11) {
         return (matrix) => ((i) => JsonTypes_composeProcessInput(header, getItemFromDict(matrix, [generalI, i])));
@@ -526,6 +579,9 @@ export function ProcessParsing_tryGetInputGetter(generalI, header) {
     }
 }
 
+/**
+ * If the given headers depict an output, returns a function for parsing the values of the matrix to the values of this type
+ */
 export function ProcessParsing_tryGetOutputGetter(generalI, header) {
     if (header.tag === 12) {
         return (matrix) => ((i) => JsonTypes_composeProcessOutput(header, getItemFromDict(matrix, [generalI, i])));
@@ -535,6 +591,18 @@ export function ProcessParsing_tryGetOutputGetter(generalI, header) {
     }
 }
 
+/**
+ * If the given headers depict a comment, returns a function for parsing the values of the matrix to the values of this type
+ */
+export function ProcessParsing_tryGetCommentGetter(generalI, header) {
+    if (header.tag === 14) {
+        return (matrix) => ((i) => (new Comment$(header.fields[0], getItemFromDict(matrix, [generalI, i]).AsFreeText)));
+    }
+    else {
+        return void 0;
+    }
+}
+
 /**
  * Given the header sequence of an ArcTable, returns a function for parsing each row of the table to a process
  */
@@ -562,8 +630,9 @@ export function ProcessParsing_getProcessGetter(processNameRoot, headers) {
     const protocolDescriptionGetter = tryPick((tupledArg_6) => ProcessParsing_tryGetProtocolDescriptionGetter(tupledArg_6[0], tupledArg_6[1]), headers_1);
     const protocolURIGetter = tryPick((tupledArg_7) => ProcessParsing_tryGetProtocolURIGetter(tupledArg_7[0], tupledArg_7[1]), headers_1);
     const protocolVersionGetter = tryPick((tupledArg_8) => ProcessParsing_tryGetProtocolVersionGetter(tupledArg_8[0], tupledArg_8[1]), headers_1);
+    const commentGetters = toList(choose((tupledArg_9) => ProcessParsing_tryGetCommentGetter(tupledArg_9[0], tupledArg_9[1]), headers_1));
     let inputGetter_1;
-    const matchValue = tryPick((tupledArg_9) => ProcessParsing_tryGetInputGetter(tupledArg_9[0], tupledArg_9[1]), headers_1);
+    const matchValue = tryPick((tupledArg_10) => ProcessParsing_tryGetInputGetter(tupledArg_10[0], tupledArg_10[1]), headers_1);
     if (matchValue == null) {
         inputGetter_1 = ((matrix_1) => ((i_1) => singleton(new ProcessInput(0, [Source_create_Z5CA08497(void 0, `${processNameRoot}_Input_${i_1}`, toList(map_1((f_1) => f_1(matrix_1)(i_1), charGetters)))]))));
     }
@@ -576,7 +645,7 @@ export function ProcessParsing_getProcessGetter(processNameRoot, headers) {
         }));
     }
     let outputGetter_1;
-    const matchValue_1 = tryPick((tupledArg_10) => ProcessParsing_tryGetOutputGetter(tupledArg_10[0], tupledArg_10[1]), headers_1);
+    const matchValue_1 = tryPick((tupledArg_11) => ProcessParsing_tryGetOutputGetter(tupledArg_11[0], tupledArg_11[1]), headers_1);
     if (matchValue_1 == null) {
         outputGetter_1 = ((matrix_3) => ((i_3) => singleton(new ProcessOutput(0, [Sample_create_62424AD2(void 0, `${processNameRoot}_Output_${i_3}`, void 0, toList(map_1((f_3) => f_3(matrix_3)(i_3), factorValueGetters)))]))));
     }
@@ -591,9 +660,10 @@ export function ProcessParsing_getProcessGetter(processNameRoot, headers) {
     return (matrix_4) => ((i_4) => {
         const pn = map((p) => Process_composeName(p, i_4), Option_fromValueWithDefault("", processNameRoot));
         const paramvalues = Option_fromValueWithDefault(empty(), map_2((f_4) => f_4(matrix_4)(i_4), parameterValueGetters));
-        const parameters = map((list_5) => map_2((pv) => value_9(pv.Category), list_5), paramvalues);
+        const parameters = map((list_5) => map_2((pv) => value_10(pv.Category), list_5), paramvalues);
+        const comments = Option_fromValueWithDefault(empty(), map_2((f_5) => f_5(matrix_4)(i_4), commentGetters));
         let protocol;
-        const p_1 = Protocol_make(void 0, map((f_5) => f_5(matrix_4)(i_4), protocolREFGetter), map((f_6) => f_6(matrix_4)(i_4), protocolTypeGetter), map((f_7) => f_7(matrix_4)(i_4), protocolDescriptionGetter), map((f_8) => f_8(matrix_4)(i_4), protocolURIGetter), map((f_9) => f_9(matrix_4)(i_4), protocolVersionGetter), parameters, Option_fromValueWithDefault(empty(), map_2((f_10) => f_10(matrix_4)(i_4), componentGetters)), void 0);
+        const p_1 = Protocol_make(void 0, map((f_6) => f_6(matrix_4)(i_4), protocolREFGetter), map((f_7) => f_7(matrix_4)(i_4), protocolTypeGetter), map((f_8) => f_8(matrix_4)(i_4), protocolDescriptionGetter), map((f_9) => f_9(matrix_4)(i_4), protocolURIGetter), map((f_10) => f_10(matrix_4)(i_4), protocolVersionGetter), parameters, Option_fromValueWithDefault(empty(), map_2((f_11) => f_11(matrix_4)(i_4), componentGetters)), void 0);
         let matchResult;
         if (p_1.Name == null) {
             if (p_1.ProtocolType == null) {
@@ -638,7 +708,7 @@ export function ProcessParsing_getProcessGetter(processNameRoot, headers) {
         const inputs = inputGetter_1(matrix_4)(i_4);
         const outputs = outputGetter_1(matrix_4)(i_4);
         patternInput = (((length(inputs) === 1) && (length(outputs) === 2)) ? [ofArray([item(0, inputs), item(0, inputs)]), outputs] : (((length(inputs) === 2) && (length(outputs) === 1)) ? [inputs, ofArray([item(0, outputs), item(0, outputs)])] : [inputs, outputs]));
-        return Process_make(void 0, pn, protocol, paramvalues, void 0, void 0, void 0, void 0, patternInput[0], patternInput[1], void 0);
+        return Process_make(void 0, pn, protocol, paramvalues, void 0, void 0, void 0, void 0, patternInput[0], patternInput[1], comments);
     });
 }
 
@@ -651,21 +721,21 @@ export function ProcessParsing_getProcessGetter(processNameRoot, headers) {
  */
 export function ProcessParsing_groupProcesses(ps) {
     return List_groupBy((x) => {
-        if ((x.Name != null) && (Process_decomposeName_Z721C83C5(value_9(x.Name))[1] != null)) {
-            return Process_decomposeName_Z721C83C5(value_9(x.Name))[0];
+        if ((x.Name != null) && (Process_decomposeName_Z721C83C5(value_10(x.Name))[1] != null)) {
+            return Process_decomposeName_Z721C83C5(value_10(x.Name))[0];
         }
-        else if ((x.ExecutesProtocol != null) && (value_9(x.ExecutesProtocol).Name != null)) {
-            return value_9(value_9(x.ExecutesProtocol).Name);
+        else if ((x.ExecutesProtocol != null) && (value_10(x.ExecutesProtocol).Name != null)) {
+            return value_10(value_10(x.ExecutesProtocol).Name);
         }
-        else if ((x.Name != null) && (value_9(x.Name).indexOf("_") >= 0)) {
-            const lastUnderScoreIndex = value_9(x.Name).lastIndexOf("_") | 0;
-            return remove(value_9(x.Name), lastUnderScoreIndex);
+        else if ((x.Name != null) && (value_10(x.Name).indexOf("_") >= 0)) {
+            const lastUnderScoreIndex = value_10(x.Name).lastIndexOf("_") | 0;
+            return remove(value_10(x.Name), lastUnderScoreIndex);
         }
         else if (x.Name != null) {
-            return value_9(x.Name);
+            return value_10(x.Name);
         }
-        else if ((x.ExecutesProtocol != null) && (value_9(x.ExecutesProtocol).ID != null)) {
-            return value_9(value_9(x.ExecutesProtocol).ID);
+        else if ((x.ExecutesProtocol != null) && (value_10(x.ExecutesProtocol).ID != null)) {
+            return value_10(value_10(x.ExecutesProtocol).ID);
         }
         else {
             return createMissingIdentifier();
@@ -681,14 +751,14 @@ export function ProcessParsing_groupProcesses(ps) {
  */
 export function ProcessParsing_mergeIdenticalProcesses(processes) {
     const l = List_groupBy((x) => {
-        if ((x.Name != null) && (Process_decomposeName_Z721C83C5(value_9(x.Name))[1] != null)) {
-            return [Process_decomposeName_Z721C83C5(value_9(x.Name))[0], boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues)];
+        if ((x.Name != null) && (Process_decomposeName_Z721C83C5(value_10(x.Name))[1] != null)) {
+            return [Process_decomposeName_Z721C83C5(value_10(x.Name))[0], boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
         }
-        else if ((x.ExecutesProtocol != null) && (value_9(x.ExecutesProtocol).Name != null)) {
-            return [value_9(value_9(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues)];
+        else if ((x.ExecutesProtocol != null) && (value_10(x.ExecutesProtocol).Name != null)) {
+            return [value_10(value_10(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
         }
         else {
-            return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues)];
+            return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
         }
     }, processes, {
         Equals: equalArrays,
@@ -700,12 +770,12 @@ export function ProcessParsing_mergeIdenticalProcesses(processes) {
         const pVs = item(0, processes_1).ParameterValues;
         const inputs = Option_fromValueWithDefault(empty(), collect((p) => defaultArg(p.Inputs, empty()), processes_1));
         const outputs = Option_fromValueWithDefault(empty(), collect((p_1) => defaultArg(p_1.Outputs, empty()), processes_1));
-        return Process_create_Z7C1F7FA9(void 0, (length(l) > 1) ? Process_composeName(n, i) : n, item(0, processes_1).ExecutesProtocol, pVs, void 0, void 0, void 0, void 0, inputs, outputs);
+        return Process_create_Z7C1F7FA9(void 0, (length(l) > 1) ? Process_composeName(n, i) : n, unwrap(item(0, processes_1).ExecutesProtocol), unwrap(pVs), void 0, void 0, void 0, void 0, unwrap(inputs), unwrap(outputs), unwrap(item(0, processes_1).Comments));
     }, l);
 }
 
 export function ProcessParsing_processToRows(p) {
-    let list_3;
+    let list_4;
     const pvs = map_2((ppv) => [JsonTypes_decomposeParameterValue(ppv), tryGetParameterColumnIndex(ppv)], defaultArg(p.ParameterValues, empty()));
     let components;
     const matchValue = p.ExecutesProtocol;
@@ -717,8 +787,9 @@ export function ProcessParsing_processToRows(p) {
     }
     else {
         const prot_1 = matchValue_1;
-        protVals = toList(delay(() => append((prot_1.Name != null) ? singleton_1([new CompositeHeader(8, []), new CompositeCell(1, [value_9(prot_1.Name)])]) : empty_1(), delay(() => append((prot_1.ProtocolType != null) ? singleton_1([new CompositeHeader(4, []), new CompositeCell(0, [value_9(prot_1.ProtocolType)])]) : empty_1(), delay(() => append((prot_1.Description != null) ? singleton_1([new CompositeHeader(5, []), new CompositeCell(1, [value_9(prot_1.Description)])]) : empty_1(), delay(() => append((prot_1.Uri != null) ? singleton_1([new CompositeHeader(6, []), new CompositeCell(1, [value_9(prot_1.Uri)])]) : empty_1(), delay(() => ((prot_1.Version != null) ? singleton_1([new CompositeHeader(7, []), new CompositeCell(1, [value_9(prot_1.Version)])]) : empty_1())))))))))));
+        protVals = toList(delay(() => append((prot_1.Name != null) ? singleton_1([new CompositeHeader(8, []), new CompositeCell(1, [value_10(prot_1.Name)])]) : empty_1(), delay(() => append((prot_1.ProtocolType != null) ? singleton_1([new CompositeHeader(4, []), new CompositeCell(0, [value_10(prot_1.ProtocolType)])]) : empty_1(), delay(() => append((prot_1.Description != null) ? singleton_1([new CompositeHeader(5, []), new CompositeCell(1, [value_10(prot_1.Description)])]) : empty_1(), delay(() => append((prot_1.Uri != null) ? singleton_1([new CompositeHeader(6, []), new CompositeCell(1, [value_10(prot_1.Uri)])]) : empty_1(), delay(() => ((prot_1.Version != null) ? singleton_1([new CompositeHeader(7, []), new CompositeCell(1, [value_10(prot_1.Version)])]) : empty_1())))))))))));
     }
+    const comments = map_2((c) => [new CompositeHeader(14, [defaultArg(c.Name, "")]), new CompositeCell(1, [defaultArg(c.Value, "")])], defaultArg(p.Comments, empty()));
     return map_2((tupledArg_1) => {
         const ios = tupledArg_1[1];
         const inputForCharas = defaultArg(tryPick_1((tupledArg_2) => {
@@ -761,8 +832,8 @@ export function ProcessParsing_processToRows(p) {
         const vals = map_2((tuple_5) => tuple_5[0], sortBy((arg) => defaultArg(arg[1], 10000), append_1(chars, append_1(components, append_1(pvs, map_2((fv) => [JsonTypes_decomposeFactorValue(fv), tryGetFactorColumnIndex(fv)], ProcessOutput_getFactorValues_Z42C11600(outputForFactors))))), {
             Compare: comparePrimitives,
         }));
-        return toList(delay(() => append(singleton_1(JsonTypes_decomposeProcessInput(inputForType)), delay(() => append(protVals, delay(() => append(vals, delay(() => singleton_1(JsonTypes_decomposeProcessOutput(outputForType))))))))));
-    }, List_groupBy((tupledArg) => [ProcessInput__get_Name(tupledArg[0]), ProcessOutput__get_Name(tupledArg[1])], (list_3 = defaultArg(p.Outputs, empty()), zip(defaultArg(p.Inputs, empty()), list_3)), {
+        return toList(delay(() => append(singleton_1(JsonTypes_decomposeProcessInput(inputForType)), delay(() => append(protVals, delay(() => append(vals, delay(() => append(comments, delay(() => singleton_1(JsonTypes_decomposeProcessOutput(outputForType))))))))))));
+    }, List_groupBy((tupledArg) => [ProcessInput__get_Name(tupledArg[0]), ProcessOutput__get_Name(tupledArg[1])], (list_4 = defaultArg(p.Outputs, empty()), zip(defaultArg(p.Inputs, empty()), list_4)), {
         Equals: equalArrays,
         GetHashCode: arrayHash,
     }));
@@ -907,9 +978,9 @@ export function CompositeRow_toProtocol(tableName, row) {
             case 5:
                 return Protocol_addParameter(ProtocolParameter.create(void 0, oa_1), p);
             case 6:
-                return Protocol_addComponent(Component_create_4208F9FC(Value_1.fromString(v_4), unit, oa_2), p);
+                return Protocol_addComponent(Component_create_4208F9FC(Value_2.fromString(v_4), unit, oa_2), p);
             case 7:
-                return Protocol_addComponent(Component_create_4208F9FC(new Value_1(0, [t]), void 0, oa_3), p);
+                return Protocol_addComponent(Component_create_4208F9FC(new Value_2(0, [t]), void 0, oa_3), p);
             default:
                 return p;
         }
@@ -927,7 +998,7 @@ export function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962(p) {
     try {
         while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
             const pp = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
-            t.AddColumn(new CompositeHeader(3, [value_9(pp.ParameterName)]), void 0, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(pp));
+            t.AddColumn(new CompositeHeader(3, [value_10(pp.ParameterName)]), void 0, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(pp));
         }
     }
     finally {
@@ -938,7 +1009,7 @@ export function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962(p) {
         while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
             const c = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
             const v_1 = map((arg) => singleton_2(ARCtrl_CompositeCell__CompositeCell_fromValue_Static_6B24B5AD(arg, unwrap(c.ComponentUnit))), c.ComponentValue);
-            t.AddColumn(new CompositeHeader(3, [value_9(c.ComponentType)]), v_1, ARCtrl_Process_Component__Component_TryGetColumnIndex(c));
+            t.AddColumn(new CompositeHeader(3, [value_10(c.ComponentType)]), v_1, ARCtrl_Process_Component__Component_TryGetColumnIndex(c));
         }
     }
     finally {