@nfdi4plants/arctrl 2.0.0-alpha.2 → 2.0.0-alpha.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/ARC.js +110 -15
- package/Contract/ARC.js +9 -1
- package/Contract/Datamap.js +180 -0
- package/Core/ArcTypes.js +148 -121
- package/Core/Conversion.js +99 -67
- package/Core/Data.js +119 -0
- package/Core/{Process/DataFile.js → DataFile.js} +3 -3
- package/Core/Helper/Identifier.js +40 -0
- package/Core/OntologyAnnotation.js +14 -4
- package/Core/Process/ColumnIndex.js +13 -3
- package/Core/Process/ProcessInput.js +5 -5
- package/Core/Process/ProcessOutput.js +5 -5
- package/Core/Process/Value.js +1 -1
- package/Core/Table/ArcTableAux.js +14 -3
- package/Core/Table/CompositeCell.js +67 -10
- package/Core/Table/CompositeColumn.js +9 -0
- package/Core/Table/CompositeHeader.js +58 -68
- package/Core/Table/DataMap.js +166 -0
- package/FileSystem/FileSystemTree.js +18 -4
- package/Json/Assay.js +4 -4
- package/Json/Process/Data.js +56 -18
- package/Json/Process/DataFile.js +5 -5
- package/Json/Process/PropertyValue.js +126 -5
- package/Json/Study.js +6 -6
- package/Json/Table/CompositeCell.js +7 -6
- package/Spreadsheet/AnnotationTable/ArcTable.js +9 -13
- package/Spreadsheet/AnnotationTable/CompositeCell.js +32 -50
- package/Spreadsheet/AnnotationTable/CompositeColumn.js +16 -10
- package/Spreadsheet/AnnotationTable/CompositeHeader.js +262 -143
- package/Spreadsheet/ArcAssay.js +2 -2
- package/Spreadsheet/ArcInvestigation.js +2 -2
- package/Spreadsheet/ArcStudy.js +2 -2
- package/Spreadsheet/DataMap.js +31 -0
- package/Spreadsheet/DataMapTable/DataMapColumn.js +36 -0
- package/Spreadsheet/DataMapTable/DataMapHeader.js +417 -0
- package/Spreadsheet/DataMapTable/DataMapTable.js +98 -0
- package/Spreadsheet/Metadata/Assays.js +2 -2
- package/Spreadsheet/Metadata/SparseTable.js +7 -7
- package/Spreadsheet/Metadata/Study.js +1 -1
- package/Spreadsheet/Template.js +2 -2
- package/Xlsx.js +29 -6
- package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsSpreadsheet.fableproj +9 -3
- package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorksheet.fs +1 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Cell.fs +23 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Cell.fs.js +21 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Row.fs +23 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Row.fs.js +19 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Table.fs +24 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Table.fs.js +15 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Value.fs +70 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Value.fs.js +48 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Workbook.fs +20 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Workbook.fs.js +21 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Worksheet.fs +49 -0
- package/fable_modules/FsSpreadsheet.6.1.2/Json/Worksheet.fs.js +44 -0
- package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Release/netstandard2.0/FsSpreadsheet.AssemblyInfo.fs +3 -3
- package/fable_modules/project_cracked.json +1 -1
- package/package.json +1 -1
- package/Core/Process/Data.js +0 -55
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCell.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCell.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCellsCollection.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Cells/FsCellsCollection.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/CellBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/CellBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/ColumnBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/ColumnBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/DSL.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/DSL.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Expression.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Expression.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Operators.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Operators.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/RowBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/RowBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/SheetBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/SheetBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/TableBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/TableBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Transform.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Transform.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Types.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/Types.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/WorkbookBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/DSL/WorkbookBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsAddress.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsAddress.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsColumn.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsColumn.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsRow.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsRow.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorkbook.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorkbook.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/FsWorksheet.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRange.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRange.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeAddress.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeAddress.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeBase.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeBase.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeColumn.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeColumn.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeRow.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Ranges/FsRangeRow.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/SheetBuilder.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/SheetBuilder.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTable.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTable.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableField.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableField.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableRow.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/Tables/FsTableRow.fs.js +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Debug/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Debug/netstandard2.0/FsSpreadsheet.AssemblyInfo.fs +0 -0
- /package/fable_modules/{FsSpreadsheet.5.1.3 → FsSpreadsheet.6.1.2}/obj/Release/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +0 -0
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import { printf, toFail } from "../../fable_modules/fable-library-js.4.16.0/String.js";
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import { singleton, tail, head, isEmpty, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
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import { singleton, ofArray, tryFindIndex, tail, head, isEmpty, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
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import { OntologyAnnotation } from "../../Core/OntologyAnnotation.js";
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import {
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import { freeTextFromFsCells, dataFromFsCells, unitizedFromFsCells, termFromFsCells } from "./CompositeCell.js";
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import { ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C } from "../../Core/Helper/Regex.js";
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import { FsCell } from "../../fable_modules/FsSpreadsheet.6.1.2/Cells/FsCell.fs.js";
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import { toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
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import { empty, singleton as singleton_1, append, delay, toList } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
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return f(OntologyAnnotation.create(name));
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return [f(OntologyAnnotation.create(name)), (cells_1) => termFromFsCells(void 0, void 0, cells_1)];
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name_1 = activePatternResult_1;
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term1 = activePatternResult_2;
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return [f(OntologyAnnotation.create(name_1, term.TermSourceRef, term.TermAccessionNumber)), (cells_2) => termFromFsCells(1, 2, cells_2)];
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const activePatternResult_5 = ActivePatterns_$007CTANColumnHeader$007C_$007C(head(tail(cellValues)));
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const term_1 = ActivePattern_mergeIDInfo(term1_1.IDSpace, term1_1.LocalID, term2_1.IDSpace, term2_1.LocalID);
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return [f(OntologyAnnotation.create(name_2, term_1.TermSourceRef, term_1.TermAccessionNumber)), (cells_3) => termFromFsCells(2, 1, cells_3)];
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default: {
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const activePatternResult_9 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(head(tail(tail(cellValues))));
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const activePatternResult_10 = ActivePatterns_$007CTANColumnHeader$007C_$007C(head(tail(tail(tail(cellValues)))));
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if (isEmpty(tail(tail(tail(tail(cellValues)))))) {
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matchResult_3 = 0;
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name_3 = activePatternResult_7;
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term1_2 = activePatternResult_9;
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term2_2 = activePatternResult_10;
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}
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else {
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}
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}
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else {
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}
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switch (matchResult_3) {
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case 0: {
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const term_2 = ActivePattern_mergeIDInfo(term1_2.IDSpace, term1_2.LocalID, term2_2.IDSpace, term2_2.LocalID);
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return [f(OntologyAnnotation.create(name_3, term_2.TermSourceRef, term_2.TermAccessionNumber)), (cells_4) => unitizedFromFsCells(1, 2, 3, cells_4)];
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}
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default: {
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let matchResult_4, name_4, term1_3, term2_3;
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if (!isEmpty(cellValues)) {
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const activePatternResult_11 = $007CAC$007C_$007C(head(cellValues));
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if (activePatternResult_11 != null) {
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if (!isEmpty(tail(cellValues))) {
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if (ActivePatterns_$007CUnitColumnHeader$007C_$007C(head(tail(cellValues))) != null) {
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if (!isEmpty(tail(tail(cellValues)))) {
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const activePatternResult_13 = ActivePatterns_$007CTANColumnHeader$007C_$007C(head(tail(tail(cellValues))));
|
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if (activePatternResult_13 != null) {
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if (!isEmpty(tail(tail(tail(cellValues))))) {
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const activePatternResult_14 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(head(tail(tail(tail(cellValues)))));
|
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if (activePatternResult_14 != null) {
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if (isEmpty(tail(tail(tail(tail(cellValues)))))) {
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matchResult_4 = 0;
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name_4 = activePatternResult_11;
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term1_3 = activePatternResult_14;
|
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term2_3 = activePatternResult_13;
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}
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else {
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}
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}
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else {
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}
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}
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else {
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|
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}
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}
|
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else {
|
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matchResult_4 = 1;
|
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|
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}
|
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|
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}
|
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else {
|
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matchResult_4 = 1;
|
|
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|
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}
|
|
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|
+
}
|
|
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|
+
else {
|
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|
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matchResult_4 = 1;
|
|
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|
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}
|
|
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249
|
}
|
|
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250
|
else {
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|
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|
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|
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|
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matchResult_4 = 1;
|
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252
|
}
|
|
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253
|
}
|
|
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254
|
else {
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|
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|
|
255
|
+
matchResult_4 = 1;
|
|
151
256
|
}
|
|
152
257
|
}
|
|
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258
|
else {
|
|
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|
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|
|
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|
+
matchResult_4 = 1;
|
|
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|
+
}
|
|
261
|
+
switch (matchResult_4) {
|
|
262
|
+
case 0: {
|
|
263
|
+
const term_3 = ActivePattern_mergeIDInfo(term1_3.IDSpace, term1_3.LocalID, term2_3.IDSpace, term2_3.LocalID);
|
|
264
|
+
return [f(OntologyAnnotation.create(name_4, term_3.TermSourceRef, term_3.TermAccessionNumber)), (cells_5) => unitizedFromFsCells(1, 3, 2, cells_5)];
|
|
265
|
+
}
|
|
266
|
+
default:
|
|
267
|
+
return void 0;
|
|
155
268
|
}
|
|
156
269
|
}
|
|
157
|
-
else {
|
|
158
|
-
matchResult_1 = 1;
|
|
159
|
-
}
|
|
160
|
-
}
|
|
161
|
-
else {
|
|
162
|
-
matchResult_1 = 1;
|
|
163
270
|
}
|
|
164
271
|
}
|
|
165
|
-
else {
|
|
166
|
-
matchResult_1 = 1;
|
|
167
|
-
}
|
|
168
|
-
}
|
|
169
|
-
else {
|
|
170
|
-
matchResult_1 = 1;
|
|
171
272
|
}
|
|
172
273
|
}
|
|
173
|
-
else {
|
|
174
|
-
matchResult_1 = 1;
|
|
175
|
-
}
|
|
176
|
-
}
|
|
177
|
-
else {
|
|
178
|
-
matchResult_1 = 1;
|
|
179
|
-
}
|
|
180
|
-
switch (matchResult_1) {
|
|
181
|
-
case 0: {
|
|
182
|
-
const term = ActivePattern_mergeIDInfo(term1.IDSpace, term1.LocalID, term2.IDSpace, term2.LocalID);
|
|
183
|
-
return f(OntologyAnnotation.create(name_1, term.TermSourceRef, term.TermAccessionNumber));
|
|
184
|
-
}
|
|
185
|
-
default:
|
|
186
|
-
return void 0;
|
|
187
274
|
}
|
|
188
275
|
}
|
|
189
276
|
}
|
|
@@ -235,17 +322,13 @@ export function ActivePattern_$007CComponent$007C_$007C(cells) {
|
|
|
235
322
|
|
|
236
323
|
export function ActivePattern_$007CInput$007C_$007C(cells) {
|
|
237
324
|
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
238
|
-
let matchResult, ioType;
|
|
325
|
+
let matchResult, cols, ioType;
|
|
239
326
|
if (!isEmpty(cellValues)) {
|
|
240
327
|
const activePatternResult = ActivePatterns_$007CInputColumnHeader$007C_$007C(head(cellValues));
|
|
241
328
|
if (activePatternResult != null) {
|
|
242
|
-
|
|
243
|
-
|
|
244
|
-
|
|
245
|
-
}
|
|
246
|
-
else {
|
|
247
|
-
matchResult = 1;
|
|
248
|
-
}
|
|
329
|
+
matchResult = 0;
|
|
330
|
+
cols = tail(cellValues);
|
|
331
|
+
ioType = activePatternResult;
|
|
249
332
|
}
|
|
250
333
|
else {
|
|
251
334
|
matchResult = 1;
|
|
@@ -255,8 +338,17 @@ export function ActivePattern_$007CInput$007C_$007C(cells) {
|
|
|
255
338
|
matchResult = 1;
|
|
256
339
|
}
|
|
257
340
|
switch (matchResult) {
|
|
258
|
-
case 0:
|
|
259
|
-
|
|
341
|
+
case 0: {
|
|
342
|
+
const matchValue = IOType.ofString(ioType);
|
|
343
|
+
if (matchValue.tag === 2) {
|
|
344
|
+
const format = map_1((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols));
|
|
345
|
+
const selectorFormat = map_1((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols));
|
|
346
|
+
return [new CompositeHeader(11, [new IOType(2, [])]), (cells_1) => dataFromFsCells(format, selectorFormat, cells_1)];
|
|
347
|
+
}
|
|
348
|
+
else {
|
|
349
|
+
return [new CompositeHeader(11, [matchValue]), freeTextFromFsCells];
|
|
350
|
+
}
|
|
351
|
+
}
|
|
260
352
|
default:
|
|
261
353
|
return void 0;
|
|
262
354
|
}
|
|
@@ -264,17 +356,13 @@ export function ActivePattern_$007CInput$007C_$007C(cells) {
|
|
|
264
356
|
|
|
265
357
|
export function ActivePattern_$007COutput$007C_$007C(cells) {
|
|
266
358
|
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
267
|
-
let matchResult, ioType;
|
|
359
|
+
let matchResult, cols, ioType;
|
|
268
360
|
if (!isEmpty(cellValues)) {
|
|
269
361
|
const activePatternResult = ActivePatterns_$007COutputColumnHeader$007C_$007C(head(cellValues));
|
|
270
362
|
if (activePatternResult != null) {
|
|
271
|
-
|
|
272
|
-
|
|
273
|
-
|
|
274
|
-
}
|
|
275
|
-
else {
|
|
276
|
-
matchResult = 1;
|
|
277
|
-
}
|
|
363
|
+
matchResult = 0;
|
|
364
|
+
cols = tail(cellValues);
|
|
365
|
+
ioType = activePatternResult;
|
|
278
366
|
}
|
|
279
367
|
else {
|
|
280
368
|
matchResult = 1;
|
|
@@ -284,98 +372,119 @@ export function ActivePattern_$007COutput$007C_$007C(cells) {
|
|
|
284
372
|
matchResult = 1;
|
|
285
373
|
}
|
|
286
374
|
switch (matchResult) {
|
|
287
|
-
case 0:
|
|
288
|
-
|
|
375
|
+
case 0: {
|
|
376
|
+
const matchValue = IOType.ofString(ioType);
|
|
377
|
+
if (matchValue.tag === 2) {
|
|
378
|
+
const format = map_1((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols));
|
|
379
|
+
const selectorFormat = map_1((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols));
|
|
380
|
+
return [new CompositeHeader(12, [new IOType(2, [])]), (cells_1) => dataFromFsCells(format, selectorFormat, cells_1)];
|
|
381
|
+
}
|
|
382
|
+
else {
|
|
383
|
+
return [new CompositeHeader(12, [matchValue]), freeTextFromFsCells];
|
|
384
|
+
}
|
|
385
|
+
}
|
|
289
386
|
default:
|
|
290
387
|
return void 0;
|
|
291
388
|
}
|
|
292
389
|
}
|
|
293
390
|
|
|
391
|
+
export function ActivePattern_$007CProtocolType$007C_$007C(cells) {
|
|
392
|
+
const activePatternResult = ActivePattern_$007CTerm$007C_$007C((s) => {
|
|
393
|
+
if (s === "Protocol Type") {
|
|
394
|
+
return s;
|
|
395
|
+
}
|
|
396
|
+
else {
|
|
397
|
+
return void 0;
|
|
398
|
+
}
|
|
399
|
+
}, (_arg) => (new CompositeHeader(4, [])), cells);
|
|
400
|
+
if (activePatternResult != null) {
|
|
401
|
+
const r = activePatternResult;
|
|
402
|
+
return r;
|
|
403
|
+
}
|
|
404
|
+
else {
|
|
405
|
+
return void 0;
|
|
406
|
+
}
|
|
407
|
+
}
|
|
408
|
+
|
|
294
409
|
export function ActivePattern_$007CProtocolHeader$007C_$007C(cells) {
|
|
295
410
|
const cellValues = map((c) => c.ValueAsString(), cells);
|
|
296
411
|
let matchResult;
|
|
297
412
|
if (!isEmpty(cellValues)) {
|
|
298
413
|
switch (head(cellValues)) {
|
|
299
|
-
case "Protocol Type": {
|
|
300
|
-
matchResult = 0;
|
|
301
|
-
break;
|
|
302
|
-
}
|
|
303
414
|
case "Protocol REF": {
|
|
304
415
|
if (isEmpty(tail(cellValues))) {
|
|
305
|
-
matchResult =
|
|
416
|
+
matchResult = 0;
|
|
306
417
|
}
|
|
307
418
|
else {
|
|
308
|
-
matchResult =
|
|
419
|
+
matchResult = 6;
|
|
309
420
|
}
|
|
310
421
|
break;
|
|
311
422
|
}
|
|
312
423
|
case "Protocol Description": {
|
|
313
424
|
if (isEmpty(tail(cellValues))) {
|
|
314
|
-
matchResult =
|
|
425
|
+
matchResult = 1;
|
|
315
426
|
}
|
|
316
427
|
else {
|
|
317
|
-
matchResult =
|
|
428
|
+
matchResult = 6;
|
|
318
429
|
}
|
|
319
430
|
break;
|
|
320
431
|
}
|
|
321
432
|
case "Protocol Uri": {
|
|
322
433
|
if (isEmpty(tail(cellValues))) {
|
|
323
|
-
matchResult =
|
|
434
|
+
matchResult = 2;
|
|
324
435
|
}
|
|
325
436
|
else {
|
|
326
|
-
matchResult =
|
|
437
|
+
matchResult = 6;
|
|
327
438
|
}
|
|
328
439
|
break;
|
|
329
440
|
}
|
|
330
441
|
case "Protocol Version": {
|
|
331
442
|
if (isEmpty(tail(cellValues))) {
|
|
332
|
-
matchResult =
|
|
443
|
+
matchResult = 3;
|
|
333
444
|
}
|
|
334
445
|
else {
|
|
335
|
-
matchResult =
|
|
446
|
+
matchResult = 6;
|
|
336
447
|
}
|
|
337
448
|
break;
|
|
338
449
|
}
|
|
339
450
|
case "Performer": {
|
|
340
451
|
if (isEmpty(tail(cellValues))) {
|
|
341
|
-
matchResult =
|
|
452
|
+
matchResult = 4;
|
|
342
453
|
}
|
|
343
454
|
else {
|
|
344
|
-
matchResult =
|
|
455
|
+
matchResult = 6;
|
|
345
456
|
}
|
|
346
457
|
break;
|
|
347
458
|
}
|
|
348
459
|
case "Date": {
|
|
349
460
|
if (isEmpty(tail(cellValues))) {
|
|
350
|
-
matchResult =
|
|
461
|
+
matchResult = 5;
|
|
351
462
|
}
|
|
352
463
|
else {
|
|
353
|
-
matchResult =
|
|
464
|
+
matchResult = 6;
|
|
354
465
|
}
|
|
355
466
|
break;
|
|
356
467
|
}
|
|
357
468
|
default:
|
|
358
|
-
matchResult =
|
|
469
|
+
matchResult = 6;
|
|
359
470
|
}
|
|
360
471
|
}
|
|
361
472
|
else {
|
|
362
|
-
matchResult =
|
|
473
|
+
matchResult = 6;
|
|
363
474
|
}
|
|
364
475
|
switch (matchResult) {
|
|
365
476
|
case 0:
|
|
366
|
-
return new CompositeHeader(
|
|
477
|
+
return [new CompositeHeader(8, []), freeTextFromFsCells];
|
|
367
478
|
case 1:
|
|
368
|
-
return new CompositeHeader(
|
|
479
|
+
return [new CompositeHeader(5, []), freeTextFromFsCells];
|
|
369
480
|
case 2:
|
|
370
|
-
return new CompositeHeader(
|
|
481
|
+
return [new CompositeHeader(6, []), freeTextFromFsCells];
|
|
371
482
|
case 3:
|
|
372
|
-
return new CompositeHeader(
|
|
483
|
+
return [new CompositeHeader(7, []), freeTextFromFsCells];
|
|
373
484
|
case 4:
|
|
374
|
-
return new CompositeHeader(
|
|
485
|
+
return [new CompositeHeader(9, []), freeTextFromFsCells];
|
|
375
486
|
case 5:
|
|
376
|
-
return new CompositeHeader(
|
|
377
|
-
case 6:
|
|
378
|
-
return new CompositeHeader(10, []);
|
|
487
|
+
return [new CompositeHeader(10, []), freeTextFromFsCells];
|
|
379
488
|
default:
|
|
380
489
|
return void 0;
|
|
381
490
|
}
|
|
@@ -398,7 +507,7 @@ export function ActivePattern_$007CFreeText$007C_$007C(cells) {
|
|
|
398
507
|
}
|
|
399
508
|
switch (matchResult) {
|
|
400
509
|
case 0:
|
|
401
|
-
return new CompositeHeader(13, [text]);
|
|
510
|
+
return [new CompositeHeader(13, [text]), freeTextFromFsCells];
|
|
402
511
|
default:
|
|
403
512
|
return void 0;
|
|
404
513
|
}
|
|
@@ -441,19 +550,26 @@ export function fromFsCells(cells) {
|
|
|
441
550
|
return o;
|
|
442
551
|
}
|
|
443
552
|
else {
|
|
444
|
-
const activePatternResult_6 = ActivePattern_$
|
|
553
|
+
const activePatternResult_6 = ActivePattern_$007CProtocolType$007C_$007C(cells);
|
|
445
554
|
if (activePatternResult_6 != null) {
|
|
446
|
-
const
|
|
447
|
-
return
|
|
555
|
+
const pt = activePatternResult_6;
|
|
556
|
+
return pt;
|
|
448
557
|
}
|
|
449
558
|
else {
|
|
450
|
-
const activePatternResult_7 = ActivePattern_$
|
|
559
|
+
const activePatternResult_7 = ActivePattern_$007CProtocolHeader$007C_$007C(cells);
|
|
451
560
|
if (activePatternResult_7 != null) {
|
|
452
|
-
const
|
|
453
|
-
return
|
|
561
|
+
const ph = activePatternResult_7;
|
|
562
|
+
return ph;
|
|
454
563
|
}
|
|
455
564
|
else {
|
|
456
|
-
|
|
565
|
+
const activePatternResult_8 = ActivePattern_$007CFreeText$007C_$007C(cells);
|
|
566
|
+
if (activePatternResult_8 != null) {
|
|
567
|
+
const ft = activePatternResult_8;
|
|
568
|
+
return ft;
|
|
569
|
+
}
|
|
570
|
+
else {
|
|
571
|
+
return toFail(printf("Could not parse header group %O"))(cells);
|
|
572
|
+
}
|
|
457
573
|
}
|
|
458
574
|
}
|
|
459
575
|
}
|
|
@@ -465,7 +581,10 @@ export function fromFsCells(cells) {
|
|
|
465
581
|
}
|
|
466
582
|
|
|
467
583
|
export function toFsCells(hasUnit, header) {
|
|
468
|
-
if (header.
|
|
584
|
+
if (header.IsDataColumn) {
|
|
585
|
+
return ofArray([new FsCell(toString(header)), new FsCell("Data Format"), new FsCell("Data Selector Format")]);
|
|
586
|
+
}
|
|
587
|
+
else if (header.IsSingleColumn) {
|
|
469
588
|
return singleton(new FsCell(toString(header)));
|
|
470
589
|
}
|
|
471
590
|
else if (header.IsTermColumn) {
|
package/Spreadsheet/ArcAssay.js
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.
|
|
1
|
+
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorksheet.fs.js";
|
|
2
2
|
import { iterate, isEmpty as isEmpty_1, choose, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
|
|
3
3
|
import { SparseRowModule_tryGetValueAt, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
|
|
4
4
|
import { fromRows as fromRows_1, toRows as toRows_1 } from "./Metadata/Assays.js";
|
|
@@ -10,7 +10,7 @@ import { ArcAssay } from "../Core/ArcTypes.js";
|
|
|
10
10
|
import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
|
|
11
11
|
import { defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
|
|
12
12
|
import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
|
|
13
|
-
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.
|
|
13
|
+
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorkbook.fs.js";
|
|
14
14
|
|
|
15
15
|
export function toMetadataSheet(assay) {
|
|
16
16
|
let assay_1;
|
|
@@ -17,8 +17,8 @@ import { toRows as toRows_4, fromRows as fromRows_4 } from "./Metadata/Study.js"
|
|
|
17
17
|
import { iterateIndexed, map as map_1, toList, empty as empty_1, collect, singleton, append as append_1, delay } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
|
|
18
18
|
import { tryFind, ofList } from "../fable_modules/fable-library-js.4.16.0/Map.js";
|
|
19
19
|
import { printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
|
|
20
|
-
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.
|
|
21
|
-
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.
|
|
20
|
+
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorksheet.fs.js";
|
|
21
|
+
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorkbook.fs.js";
|
|
22
22
|
|
|
23
23
|
export class InvestigationInfo extends Record {
|
|
24
24
|
constructor(Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Comments) {
|
package/Spreadsheet/ArcStudy.js
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.
|
|
1
|
+
import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorksheet.fs.js";
|
|
2
2
|
import { map, append, iterateIndexed } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
|
|
3
3
|
import { SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
|
|
4
4
|
import { fromRows as fromRows_1, toRows } from "./Metadata/Study.js";
|
|
@@ -10,7 +10,7 @@ import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
|
|
|
10
10
|
import { empty } from "../fable_modules/fable-library-js.4.16.0/List.js";
|
|
11
11
|
import { ResizeArray_iter, ResizeArray_isEmpty, ResizeArray_choose } from "../Core/Helper/Collections.js";
|
|
12
12
|
import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
|
|
13
|
-
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.
|
|
13
|
+
import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.1.2/FsWorkbook.fs.js";
|
|
14
14
|
|
|
15
15
|
export function ArcStudy_toMetadataSheet(study, assays) {
|
|
16
16
|
let source_1;
|