@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.1

package/ISA/ISA.Json/Publication.js

@@ -1,86 +0,0 @@
-import { printf, toText, replace } from "../../fable_modules/fable-library-js.4.13.0/String.js";
-import { ofArray, choose } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-import { equals } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { ConverterOptions__set_IncludeContext_Z1FBCCD16, ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeContext, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
-import { tryIncludeArray, tryInclude } from "./GEncode.js";
-import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
-import { decoder as decoder_2, encoder as encoder_1 } from "./Comment.js";
-import { context_jsonvalue } from "./context/rocrate/isa_publication_context.js";
-import { uri, object } from "./Decode.js";
-import { array, string } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { Publication } from "../ISA/JsonTypes/Publication.js";
-import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
-
-export function genID(p) {
-    const matchValue = p.DOI;
-    if (matchValue == null) {
-        const matchValue_1 = p.PubMedID;
-        if (matchValue_1 == null) {
-            const matchValue_2 = p.Title;
-            if (matchValue_2 == null) {
-                return "#EmptyPublication";
-            }
-            else {
-                return "#Pub_" + replace(matchValue_2, " ", "_");
-            }
-        }
-        else {
-            return matchValue_1;
-        }
-    }
-    else {
-        return matchValue;
-    }
-}
-
-export function encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [genID(oa)])]) : empty(), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", new Json(0, ["Publication"])]) : empty(), delay(() => append(singleton(tryInclude("pubMedID", (value_2) => (new Json(0, [value_2])), oa.PubMedID)), delay(() => append(singleton(tryInclude("doi", (value_4) => (new Json(0, [value_4])), oa.DOI)), delay(() => append(singleton(tryInclude("authorList", (value_6) => (new Json(0, [value_6])), oa.Authors)), delay(() => append(singleton(tryInclude("title", (value_8) => (new Json(0, [value_8])), oa.Title)), delay(() => append(singleton(tryInclude("status", (oa_1) => OntologyAnnotation_encoder(options, oa_1), oa.Status)), delay(() => append(singleton(tryIncludeArray("comments", (comment) => encoder_1(options, comment), oa.Comments)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue]) : empty()))))))))))))))))))))]);
-}
-
-export const allowedFields = ofArray(["@id", "pubMedID", "doi", "authorList", "title", "status", "comments", "@type", "@context"]);
-
-export function decoder(options) {
-    return object(allowedFields, (get$) => {
-        let objectArg, objectArg_1, objectArg_2, objectArg_3, arg_9, objectArg_4, arg_11, objectArg_5;
-        return new Publication((objectArg = get$.Optional, objectArg.Field("pubMedID", uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("doi", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("authorList", string)), (objectArg_3 = get$.Optional, objectArg_3.Field("title", string)), (arg_9 = OntologyAnnotation_decoder(options), (objectArg_4 = get$.Optional, objectArg_4.Field("status", arg_9))), (arg_11 = array(decoder_2(options)), (objectArg_5 = get$.Optional, objectArg_5.Field("comments", arg_11))));
-    });
-}
-
-export function fromJsonString(s) {
-    const matchValue = fromString(decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function toJsonString(p) {
-    return toString(2, encoder(ConverterOptions_$ctor(), p));
-}
-
-/**
- * exports in json-ld format
- */
-export function toJsonldString(p) {
-    let returnVal;
-    return toString(2, encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), p));
-}
-
-export function toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-

package/ISA/ISA.Json/StringTable.js

@@ -1,44 +0,0 @@
-import { item, map, setItem, fill } from "../../fable_modules/fable-library-js.4.13.0/Array.js";
-import { iterate } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { int, string, array as array_1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { Dict_tryFind } from "../ISA/Helper.js";
-import { addToDict } from "../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library-js.4.13.0/Result.js";
-
-export function StringTable_arrayFromMap(otm) {
-    const a = fill(new Array(otm.size), 0, otm.size, "");
-    iterate((kv) => {
-        setItem(a, kv[1], kv[0]);
-    }, otm);
-    return a;
-}
-
-export function StringTable_encoder(ot) {
-    return new Json(6, [map((value) => (new Json(0, [value])), ot)]);
-}
-
-export const StringTable_decoder = array_1(string);
-
-export function StringTable_encodeString(otm, s) {
-    const matchValue = Dict_tryFind(s, otm);
-    if (matchValue == null) {
-        const i_1 = otm.size | 0;
-        addToDict(otm, s, i_1);
-        return new Json(7, [i_1 >>> 0]);
-    }
-    else {
-        const i = matchValue | 0;
-        return new Json(7, [i >>> 0]);
-    }
-}
-
-export function StringTable_decodeString(ot) {
-    return {
-        Decode(s, json) {
-            const matchValue = int.Decode(s, json);
-            return (matchValue.tag === 1) ? (new FSharpResult$2(1, [matchValue.fields[0]])) : (new FSharpResult$2(0, [item(matchValue.fields[0], ot)]));
-        },
-    };
-}
-

package/ISA/ISA.Json/Study.js

@@ -1,186 +0,0 @@
-import { ofArray, choose } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-import { equals } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { tryInclude, tryIncludeList } from "./GEncode.js";
-import { Sample_decoder, Source_decoder, Sample_encoder, Source_encoder } from "./Data.js";
-import { MaterialAttribute_decoder, MaterialAttribute_encoder, Material_decoder, Material_encoder } from "./Material.js";
-import { uri, object } from "./Decode.js";
-import { string, list as list_1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { StudyMaterials } from "../ISA/JsonTypes/StudyMaterials.js";
-import { printf, toText, remove, replace } from "../../fable_modules/fable-library-js.4.13.0/String.js";
-import { max } from "../../fable_modules/fable-library-js.4.13.0/Double.js";
-import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { ConverterOptions__set_IncludeContext_Z1FBCCD16, ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeContext, ConverterOptions__get_IsRoCrate, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
-import { list as list_2 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
-import { decoder as decoder_1, encoder } from "./Publication.js";
-import { decoder as decoder_2, encoder as encoder_1 } from "./Person.js";
-import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
-import { Protocol_decoder, Protocol_encoder } from "./Protocol.js";
-import { Process_decoder, Process_encoder } from "./Process.js";
-import { Assay_decoder, Assay_encoder } from "./Assay.js";
-import { Factor_decoder, Factor_encoder } from "./Factor.js";
-import { decoder as decoder_3, encoder as encoder_2 } from "./Comment.js";
-import { context_jsonvalue } from "./context/rocrate/isa_study_context.js";
-import { Study } from "../ISA/JsonTypes/Study.js";
-import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
-
-export function StudyMaterials_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, ofArray([tryIncludeList("sources", (oa_1) => Source_encoder(options, oa_1), oa.Sources), tryIncludeList("samples", (oa_2) => Sample_encoder(options, oa_2), oa.Samples), tryIncludeList("otherMaterials", (oa_3) => Material_encoder(options, oa_3), oa.OtherMaterials)]))]);
-}
-
-export const StudyMaterials_allowedFields = ofArray(["sources", "samples", "otherMaterials"]);
-
-export function StudyMaterials_decoder(options) {
-    return object(StudyMaterials_allowedFields, (get$) => {
-        let arg_1, objectArg, arg_3, objectArg_1, arg_5, objectArg_2;
-        return new StudyMaterials((arg_1 = list_1(Source_decoder(options)), (objectArg = get$.Optional, objectArg.Field("sources", arg_1))), (arg_3 = list_1(Sample_decoder(options)), (objectArg_1 = get$.Optional, objectArg_1.Field("samples", arg_3))), (arg_5 = list_1(Material_decoder(options)), (objectArg_2 = get$.Optional, objectArg_2.Field("otherMaterials", arg_5))));
-    });
-}
-
-export function Study_genID(s) {
-    const matchValue = s.ID;
-    if (matchValue == null) {
-        const matchValue_1 = s.FileName;
-        if (matchValue_1 == null) {
-            const matchValue_2 = s.Identifier;
-            if (matchValue_2 == null) {
-                const matchValue_3 = s.Title;
-                if (matchValue_3 == null) {
-                    return "#EmptyStudy";
-                }
-                else {
-                    return "#Study_" + replace(matchValue_3, " ", "_");
-                }
-            }
-            else {
-                return "#Study_" + replace(matchValue_2, " ", "_");
-            }
-        }
-        else {
-            const n = matchValue_1;
-            return remove(replace(n, " ", "_"), 0, 1 + max(n.lastIndexOf("/"), n.lastIndexOf("\\")));
-        }
-    }
-    else {
-        return URIModule_toString(matchValue);
-    }
-}
-
-export function Study_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [Study_genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", list_2(ofArray([new Json(0, ["Study"]), new Json(0, ["ArcStudy"])]))]) : empty(), delay(() => append(singleton(tryInclude("filename", (value_5) => (new Json(0, [value_5])), oa.FileName)), delay(() => append(singleton(tryInclude("identifier", (value_7) => (new Json(0, [value_7])), oa.Identifier)), delay(() => append(singleton(tryInclude("title", (value_9) => (new Json(0, [value_9])), oa.Title)), delay(() => append(singleton(tryInclude("description", (value_11) => (new Json(0, [value_11])), oa.Description)), delay(() => append(singleton(tryInclude("submissionDate", (value_13) => (new Json(0, [value_13])), oa.SubmissionDate)), delay(() => append(singleton(tryInclude("publicReleaseDate", (value_15) => (new Json(0, [value_15])), oa.PublicReleaseDate)), delay(() => append(singleton(tryIncludeList("publications", (oa_1) => encoder(options, oa_1), oa.Publications)), delay(() => append(singleton(tryIncludeList("people", (oa_2) => encoder_1(options, oa_2), oa.Contacts)), delay(() => append(singleton(tryIncludeList("studyDesignDescriptors", (oa_3) => OntologyAnnotation_encoder(options, oa_3), oa.StudyDesignDescriptors)), delay(() => append(!ConverterOptions__get_IsRoCrate(options) ? singleton(tryIncludeList("protocols", (oa_4) => Protocol_encoder(options, void 0, void 0, void 0, oa_4), oa.Protocols)) : empty(), delay(() => {
-        let matchValue, m;
-        return append(ConverterOptions__get_IsRoCrate(options) ? ((matchValue = oa.Materials, (matchValue == null) ? (empty()) : ((m = matchValue, append(singleton(tryIncludeList("samples", (oa_5) => Sample_encoder(options, oa_5), m.Samples)), delay(() => append(singleton(tryIncludeList("sources", (oa_6) => Source_encoder(options, oa_6), m.Sources)), delay(() => singleton(tryIncludeList("materials", (oa_7) => Material_encoder(options, oa_7), m.OtherMaterials)))))))))) : empty(), delay(() => append(!ConverterOptions__get_IsRoCrate(options) ? singleton(tryInclude("materials", (oa_8) => StudyMaterials_encoder(options, oa_8), oa.Materials)) : empty(), delay(() => append(singleton(tryIncludeList("processSequence", (oa_9) => Process_encoder(options, oa.Identifier, void 0, oa_9), oa.ProcessSequence)), delay(() => append(singleton(tryIncludeList("assays", (oa_10) => Assay_encoder(options, oa.Identifier, oa_10), oa.Assays)), delay(() => append(singleton(tryIncludeList("factors", (oa_11) => Factor_encoder(options, oa_11), oa.Factors)), delay(() => append(singleton(tryIncludeList("characteristicCategories", (oa_12) => MaterialAttribute_encoder(options, oa_12), oa.CharacteristicCategories)), delay(() => append(singleton(tryIncludeList("unitCategories", (oa_13) => OntologyAnnotation_encoder(options, oa_13), oa.UnitCategories)), delay(() => append(singleton(tryIncludeList("comments", (comment) => encoder_2(options, comment), oa.Comments)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue]) : empty())))))))))))))))));
-    })))))))))))))))))))))))))))]);
-}
-
-export const Study_allowedFields = ofArray(["@id", "filename", "identifier", "title", "description", "submissionDate", "publicReleaseDate", "publications", "people", "studyDesignDescriptors", "protocols", "materials", "assays", "factors", "characteristicCategories", "unitCategories", "processSequence", "comments", "@type", "@context"]);
-
-export function Study_decoder(options) {
-    return object(Study_allowedFields, (get$) => {
-        let arg_33, objectArg_16, arg_35, objectArg_17;
-        let ID;
-        const objectArg = get$.Optional;
-        ID = objectArg.Field("@id", uri);
-        let FileName;
-        const objectArg_1 = get$.Optional;
-        FileName = objectArg_1.Field("filename", string);
-        let Identifier;
-        const objectArg_2 = get$.Optional;
-        Identifier = objectArg_2.Field("identifier", string);
-        let Title;
-        const objectArg_3 = get$.Optional;
-        Title = objectArg_3.Field("title", string);
-        let Description;
-        const objectArg_4 = get$.Optional;
-        Description = objectArg_4.Field("description", string);
-        let SubmissionDate;
-        const objectArg_5 = get$.Optional;
-        SubmissionDate = objectArg_5.Field("submissionDate", string);
-        let PublicReleaseDate;
-        const objectArg_6 = get$.Optional;
-        PublicReleaseDate = objectArg_6.Field("publicReleaseDate", string);
-        let Publications;
-        const arg_15 = list_1(decoder_1(options));
-        const objectArg_7 = get$.Optional;
-        Publications = objectArg_7.Field("publications", arg_15);
-        let Contacts;
-        const arg_17 = list_1(decoder_2(options));
-        const objectArg_8 = get$.Optional;
-        Contacts = objectArg_8.Field("people", arg_17);
-        let StudyDesignDescriptors;
-        const arg_19 = list_1(OntologyAnnotation_decoder(options));
-        const objectArg_9 = get$.Optional;
-        StudyDesignDescriptors = objectArg_9.Field("studyDesignDescriptors", arg_19);
-        let Protocols;
-        const arg_21 = list_1(Protocol_decoder(options));
-        const objectArg_10 = get$.Optional;
-        Protocols = objectArg_10.Field("protocols", arg_21);
-        let Materials;
-        const arg_23 = StudyMaterials_decoder(options);
-        const objectArg_11 = get$.Optional;
-        Materials = objectArg_11.Field("materials", arg_23);
-        let Assays;
-        const arg_25 = list_1(Assay_decoder(options));
-        const objectArg_12 = get$.Optional;
-        Assays = objectArg_12.Field("assays", arg_25);
-        let Factors;
-        const arg_27 = list_1(Factor_decoder(options));
-        const objectArg_13 = get$.Optional;
-        Factors = objectArg_13.Field("factors", arg_27);
-        let CharacteristicCategories;
-        const arg_29 = list_1(MaterialAttribute_decoder(options));
-        const objectArg_14 = get$.Optional;
-        CharacteristicCategories = objectArg_14.Field("characteristicCategories", arg_29);
-        let UnitCategories;
-        const arg_31 = list_1(OntologyAnnotation_decoder(options));
-        const objectArg_15 = get$.Optional;
-        UnitCategories = objectArg_15.Field("unitCategories", arg_31);
-        return new Study(ID, FileName, Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Publications, Contacts, StudyDesignDescriptors, Protocols, Materials, (arg_33 = list_1(Process_decoder(options)), (objectArg_16 = get$.Optional, objectArg_16.Field("processSequence", arg_33))), Assays, Factors, CharacteristicCategories, UnitCategories, (arg_35 = list_1(decoder_3(options)), (objectArg_17 = get$.Optional, objectArg_17.Field("comments", arg_35))));
-    });
-}
-
-export function Study_fromJsonString(s) {
-    const matchValue = fromString(Study_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function Study_toJsonString(p) {
-    return toString(2, Study_encoder(ConverterOptions_$ctor(), p));
-}
-
-/**
- * exports in json-ld format
- */
-export function Study_toJsonldString(s) {
-    let returnVal;
-    return toString(2, Study_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), s));
-}
-
-export function Study_toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, Study_encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-

package/ISA/ISA.Json/context/rocrate/isa_assay_context.js

@@ -1,34 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Assay, ArcAssay, measurementType, technologyType, technologyPlatform, dataFiles, materials, otherMaterials, samples, characteristicCategories, processSequences, unitCategories, comments, filename) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Assay = Assay;
-        this.ArcAssay = ArcAssay;
-        this.measurementType = measurementType;
-        this.technologyType = technologyType;
-        this.technologyPlatform = technologyPlatform;
-        this.dataFiles = dataFiles;
-        this.materials = materials;
-        this.otherMaterials = otherMaterials;
-        this.samples = samples;
-        this.characteristicCategories = characteristicCategories;
-        this.processSequences = processSequences;
-        this.unitCategories = unitCategories;
-        this.comments = comments;
-        this.filename = filename;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Assay.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Assay", string_type], ["ArcAssay", string_type], ["measurementType", string_type], ["technologyType", string_type], ["technologyPlatform", string_type], ["dataFiles", string_type], ["materials", string_type], ["otherMaterials", string_type], ["samples", string_type], ["characteristicCategories", string_type], ["processSequences", string_type], ["unitCategories", string_type], ["comments", string_type], ["filename", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Assay", new Json(0, ["sdo:Dataset"])], ["ArcAssay", new Json(0, ["arc:ARC#ARC_00000042"])], ["measurementType", new Json(0, ["sdo:variableMeasured"])], ["technologyType", new Json(0, ["sdo:measurementTechnique"])], ["technologyPlatform", new Json(0, ["sdo:instrument"])], ["dataFiles", new Json(0, ["sdo:hasPart"])], ["materials", new Json(0, ["arc:ARC#ARC_00000074"])], ["otherMaterials", new Json(0, ["arc:ARC#ARC_00000074"])], ["samples", new Json(0, ["arc:ARC#ARC_00000074"])], ["characteristicCategories", new Json(0, ["arc:ARC#ARC_00000049"])], ["processSequences", new Json(0, ["arc:ARC#ARC_00000047"])], ["unitCategories", new Json(0, ["arc:ARC#ARC_00000051"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])], ["filename", new Json(0, ["sdo:url"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"https://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Assay\": \"sdo:Dataset\",\r\n    \"ArcAssay\": \"arc:ARC#ARC_00000042\",\r\n\r\n    \"measurementType\": \"sdo:variableMeasured\",\r\n    \"technologyType\": \"sdo:measurementTechnique\",\r\n    \"technologyPlatform\": \"sdo:instrument\",\r\n    \"dataFiles\": \"sdo:hasPart\",\r\n\r\n    \"materials\": \"arc:ARC#ARC_00000074\",\r\n    \"otherMaterials\": \"arc:ARC#ARC_00000074\",\r\n    \"samples\": \"arc:ARC#ARC_00000074\",\r\n    \"characteristicCategories\": \"arc:ARC#ARC_00000049\",\r\n    \"processSequences\": \"arc:ARC#ARC_00000047\",\r\n    \"unitCategories\": \"arc:ARC#ARC_00000051\",\r\n\r\n    \"comments\": \"sdo:disambiguatingDescription\",\r\n    \"filename\": \"sdo:url\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_comment_context.js

@@ -1,23 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Comment$, name, value) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Comment = Comment$;
-        this.name = name;
-        this.value = value;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Comment.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Comment", string_type], ["name", string_type], ["value", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Comment", new Json(0, ["sdo:Comment"])], ["name", new Json(0, ["sdo:name"])], ["value", new Json(0, ["sdo:value"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n    \r\n    \"Comment\": \"sdo:Comment\",\r\n    \"name\": \"sdo:name\",\r\n    \"value\": \"sdo:value\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_component_context.js

@@ -1,24 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Component, ArcComponent, componentName, componentType) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Component = Component;
-        this.ArcComponent = ArcComponent;
-        this.componentName = componentName;
-        this.componentType = componentType;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Component.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Component", string_type], ["ArcComponent", string_type], ["componentName", string_type], ["componentType", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Component", new Json(0, ["sdo:Thing"])], ["ArcComponent", new Json(0, ["arc:ARC#ARC_00000065"])], ["componentName", new Json(0, ["arc:ARC#ARC_00000019"])], ["componentType", new Json(0, ["arc:ARC#ARC_00000102"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n    \r\n    \"Component\": \"sdo:Thing\",\r\n    \"ArcComponent\": \"arc:ARC#ARC_00000065\",\r\n\r\n    \"componentName\": \"arc:ARC#ARC_00000019\",\r\n    \"componentType\": \"arc:ARC#ARC_00000102\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_data_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Data, ArcData, type, name, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Data = Data;
-        this.ArcData = ArcData;
-        this.type = type;
-        this.name = name;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Data.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Data", string_type], ["ArcData", string_type], ["type", string_type], ["name", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Data", new Json(0, ["sdo:MediaObject"])], ["ArcData", new Json(0, ["arc:ARC#ARC_00000076"])], ["type", new Json(0, ["arc:ARC#ARC_00000107"])], ["name", new Json(0, ["sdo:name"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Data\": \"sdo:MediaObject\",\r\n    \"ArcData\": \"arc:ARC#ARC_00000076\",\r\n\r\n    \"type\": \"arc:ARC#ARC_00000107\",\r\n\r\n    \"name\": \"sdo:name\",\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_factor_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Factor, ArcFactor, factorName, factorType, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Factor = Factor;
-        this.ArcFactor = ArcFactor;
-        this.factorName = factorName;
-        this.factorType = factorType;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Factor.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Factor", string_type], ["ArcFactor", string_type], ["factorName", string_type], ["factorType", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Factor", new Json(0, ["sdo:Thing"])], ["ArcFactor", new Json(0, ["arc:ARC#ARC_00000044"])], ["factorName", new Json(0, ["arc:ARC#ARC_00000019"])], ["factorType", new Json(0, ["arc:ARC#ARC_00000078"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Factor\": \"sdo:Thing\",\r\n    \"ArcFactor\": \"arc:ARC#ARC_00000044\",\r\n\r\n    \"factorName\": \"arc:ARC#ARC_00000019\",\r\n    \"factorType\": \"arc:ARC#ARC_00000078\",\r\n\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_factor_value_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, FactorValue, ArcFactorValue, category, value, unit) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.FactorValue = FactorValue;
-        this.ArcFactorValue = ArcFactorValue;
-        this.category = category;
-        this.value = value;
-        this.unit = unit;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.FactorValue.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["FactorValue", string_type], ["ArcFactorValue", string_type], ["category", string_type], ["value", string_type], ["unit", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["FactorValue", new Json(0, ["sdo:PropertyValue"])], ["ArcFactorValue", new Json(0, ["arc:ARC#ARC_00000084"])], ["category", new Json(0, ["arc:category"])], ["value", new Json(0, ["arc:ARC#ARC_00000044"])], ["unit", new Json(0, ["arc:ARC#ARC_00000106"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"FactorValue\": \"sdo:PropertyValue\",\r\n    \"ArcFactorValue\": \"arc:ARC#ARC_00000084\",\r\n\r\n    \"category\": \"arc:category\",\r\n    \"value\": \"arc:ARC#ARC_00000044\",\r\n    \"unit\": \"arc:ARC#ARC_00000106\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_material_attribute_value_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, MaterialAttributeValue, ArcMaterialAttributeValue, category, value, unit) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.MaterialAttributeValue = MaterialAttributeValue;
-        this.ArcMaterialAttributeValue = ArcMaterialAttributeValue;
-        this.category = category;
-        this.value = value;
-        this.unit = unit;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.MaterialAttributeValue.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["MaterialAttributeValue", string_type], ["ArcMaterialAttributeValue", string_type], ["category", string_type], ["value", string_type], ["unit", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["MaterialAttributeValue", new Json(0, ["sdo:PropertyValue"])], ["ArcMaterialAttributeValue", new Json(0, ["arc:ARC#ARC_00000079"])], ["category", new Json(0, ["arc:ARC#ARC_00000049"])], ["value", new Json(0, ["arc:ARC#ARC_00000036"])], ["unit", new Json(0, ["arc:ARC#ARC_00000106"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"MaterialAttributeValue\": \"sdo:PropertyValue\",\r\n    \"ArcMaterialAttributeValue\": \"arc:ARC#ARC_00000079\",\r\n\r\n    \"category\": \"arc:ARC#ARC_00000049\",\r\n    \"value\": \"arc:ARC#ARC_00000036\",\r\n    \"unit\": \"arc:ARC#ARC_00000106\"\r\n  }\r\n}\r\n   ";
-

package/ISA/ISA.Json/context/rocrate/isa_material_context.js

@@ -1,26 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Material, ArcMaterial, type, name, characteristics, derivesFrom) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Material = Material;
-        this.ArcMaterial = ArcMaterial;
-        this.type = type;
-        this.name = name;
-        this.characteristics = characteristics;
-        this.derivesFrom = derivesFrom;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Material.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Material", string_type], ["ArcMaterial", string_type], ["type", string_type], ["name", string_type], ["characteristics", string_type], ["derivesFrom", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["ArcMaterial", new Json(0, ["arc:ARC#ARC_00000108"])], ["Material", new Json(0, ["sdo:Thing"])], ["type", new Json(0, ["arc:ARC#ARC_00000085"])], ["name", new Json(0, ["arc:ARC#ARC_00000019"])], ["characteristics", new Json(0, ["arc:ARC#ARC_00000080"])], ["derivesFrom", new Json(0, ["arc:ARC#ARC_00000082"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"ArcMaterial\": \"arc:ARC#ARC_00000108\",\r\n    \"Material\": \"sdo:Thing\",\r\n\r\n    \"type\": \"arc:ARC#ARC_00000085\",\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\",\r\n    \"derivesFrom\": \"arc:ARC#ARC_00000082\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_ontology_annotation_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, OntologyAnnotation, annotationValue, termSource, termAccession, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.OntologyAnnotation = OntologyAnnotation;
-        this.annotationValue = annotationValue;
-        this.termSource = termSource;
-        this.termAccession = termAccession;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.OntologyAnnotation.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["OntologyAnnotation", string_type], ["annotationValue", string_type], ["termSource", string_type], ["termAccession", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["OntologyAnnotation", new Json(0, ["sdo:DefinedTerm"])], ["annotationValue", new Json(0, ["sdo:name"])], ["termSource", new Json(0, ["sdo:inDefinedTermSet"])], ["termAccession", new Json(0, ["sdo:termCode"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"OntologyAnnotation\": \"sdo:DefinedTerm\",\r\n    \r\n    \"annotationValue\": \"sdo:name\",\r\n    \"termSource\": \"sdo:inDefinedTermSet\",\r\n    \"termAccession\": \"sdo:termCode\",\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_ontology_source_reference_context.js

@@ -1,26 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, OntologySourceReference, description, name, file, version, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.OntologySourceReference = OntologySourceReference;
-        this.description = description;
-        this.name = name;
-        this.file = file;
-        this.version = version;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.OntologySourceReference.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["OntologySourceReference", string_type], ["description", string_type], ["name", string_type], ["file", string_type], ["version", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["OntologySourceReference", new Json(0, ["sdo:DefinedTermSet"])], ["description", new Json(0, ["sdo:description"])], ["name", new Json(0, ["sdo:name"])], ["file", new Json(0, ["sdo:url"])], ["version", new Json(0, ["sdo:version"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"OntologySourceReference\": \"sdo:DefinedTermSet\",\r\n    \r\n    \"description\": \"sdo:description\",\r\n    \"name\": \"sdo:name\",\r\n    \"file\": \"sdo:url\",\r\n    \"version\": \"sdo:version\",\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_organization_context.js

@@ -1,22 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Organization, name) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Organization = Organization;
-        this.name = name;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Organization.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Organization", string_type], ["name", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Organization", new Json(0, ["sdo:Organization"])], ["name", new Json(0, ["sdo:name"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Organization\": \"sdo:Organization\",\r\n    \r\n    \"name\": \"sdo:name\"\r\n  }\r\n}\r\n    ";
-