@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.1

package/ARC.js

@@ -1,38 +1,44 @@
-import { concat, fold, map, exactlyOne, choose } from "./fable_modules/fable-library-js.4.13.0/Array.js";
-import { ARCtrl_ISA_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ISA_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ISA_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ISA_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49, ARCtrl_ISA_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ISA_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F, ARCtrl_ISA_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F, ARCtrl_ISA_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F } from "./Contracts/Contracts.ArcTypes.js";
-import { collect, empty, iterate, find, tryFind, map as map_1, singleton, append, delay, toList, toArray } from "./fable_modules/fable-library-js.4.13.0/Seq.js";
-import { createRunsFolder, createWorkflowsFolder, createInvestigationFile, createStudyFolder, createStudiesFolder, createAssayFolder, createAssaysFolder } from "./FileSystemTree.js";
+import { concat, fold, map, exactlyOne, choose } from "./fable_modules/fable-library-js.4.16.0/Array.js";
+import { ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F } from "./Contract/ArcAssay.js";
+import { ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F } from "./Contract/ArcStudy.js";
+import { ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F } from "./Contract/ArcInvestigation.js";
+import { collect, empty, iterate, find, tryFind, map as map_1, singleton, append, delay, toList, toArray } from "./fable_modules/fable-library-js.4.16.0/Seq.js";
 import { FileSystemTree } from "./FileSystem/FileSystemTree.js";
 import { FileSystem } from "./FileSystem/FileSystem.js";
-import { bind, map as map_2, value as value_2, defaultArg, unwrap } from "./fable_modules/fable-library-js.4.13.0/Option.js";
-import { getStudyFolderPath, getAssayFolderPath } from "./Path.js";
+import { bind, map as map_2, value as value_2, defaultArg, unwrap } from "./fable_modules/fable-library-js.4.16.0/Option.js";
+import { getStudyFolderPath, getAssayFolderPath } from "./FileSystem/Path.js";
 import { Contract } from "./Contract/Contract.js";
-import { ofArray } from "./fable_modules/fable-library-js.4.13.0/List.js";
-import { tryISAReadContractFromPath } from "./Contracts/Contracts.ARCtrl.js";
-import { ArcTables } from "./ISA/ISA/ArcTypes/ArcTables.js";
-import { comparePrimitives, safeHash } from "./fable_modules/fable-library-js.4.13.0/Util.js";
-import { addToDict } from "./fable_modules/fable-library-js.4.13.0/MapUtil.js";
-import { toFsWorkbook, toLightFsWorkbook } from "./ISA/ISA.Spreadsheet/ArcInvestigation.js";
-import { ArcInvestigation } from "./ISA/ISA/ArcTypes/ArcTypes.js";
-import { Assay_fileNameFromIdentifier, Study_fileNameFromIdentifier } from "./ISA/ISA/Identifier.js";
-import { ARCtrl_ISA_ArcStudy__ArcStudy_toFsWorkbook_Static_Z2A9662E9 } from "./ISA/ISA.Spreadsheet/ArcStudy.js";
-import { toFsWorkbook as toFsWorkbook_1 } from "./ISA/ISA.Spreadsheet/ArcAssay.js";
+import { ofArray } from "./fable_modules/fable-library-js.4.16.0/List.js";
+import { tryISAReadContractFromPath } from "./Contract/ARC.js";
+import { ArcTables } from "./Core/Table/ArcTables.js";
+import { comparePrimitives, safeHash } from "./fable_modules/fable-library-js.4.16.0/Util.js";
+import { addToDict } from "./fable_modules/fable-library-js.4.16.0/MapUtil.js";
+import { toFsWorkbook, toLightFsWorkbook } from "./Spreadsheet/ArcInvestigation.js";
+import { ArcInvestigation } from "./Core/ArcTypes.js";
+import { Assay_fileNameFromIdentifier, Study_fileNameFromIdentifier } from "./Core/Helper/Identifier.js";
+import { ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7 } from "./Spreadsheet/ArcStudy.js";
+import { toFsWorkbook as toFsWorkbook_1 } from "./Spreadsheet/ArcAssay.js";
 import { Dictionary_tryGet } from "./fable_modules/FsSpreadsheet.5.1.3/Cells/FsCellsCollection.fs.js";
-import { Clone_createCloneContract_5000466F, Init_createAddRemoteContract_Z721C83C5, gitignoreContract, Init_createInitContract_6DFDD678 } from "./Contracts/Contracts.Git.js";
-import { FSharpSet__Contains, ofSeq, unionMany } from "./fable_modules/fable-library-js.4.13.0/Set.js";
-import { ofSeq as ofSeq_1 } from "./fable_modules/fable-library-js.4.13.0/Map.js";
-import { class_type } from "./fable_modules/fable-library-js.4.13.0/Reflection.js";
+import { Clone_createCloneContract_5000466F, Init_createAddRemoteContract_Z721C83C5, gitignoreContract, Init_createInitContract_6DFDD678 } from "./Contract/Git.js";
+import { FSharpSet__Contains, ofSeq, unionMany } from "./fable_modules/fable-library-js.4.16.0/Set.js";
+import { ofSeq as ofSeq_1 } from "./fable_modules/fable-library-js.4.16.0/Map.js";
+import { fromString } from "./fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { encoder, decoder as decoder_1 } from "./Json/ARC.js";
+import { printf, toText } from "./fable_modules/fable-library-js.4.16.0/String.js";
+import { toString } from "./fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+import { defaultSpaces } from "./Json/Encode.js";
+import { class_type } from "./fable_modules/fable-library-js.4.16.0/Reflection.js";
 
 export function ARCAux_getArcAssaysFromContracts(contracts) {
-    return choose(ARCtrl_ISA_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F, contracts);
+    return choose(ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F, contracts);
 }
 
 export function ARCAux_getArcStudiesFromContracts(contracts) {
-    return choose(ARCtrl_ISA_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F, contracts);
+    return choose(ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F, contracts);
 }
 
 export function ARCAux_getArcInvestigationFromContracts(contracts) {
-    return exactlyOne(choose(ARCtrl_ISA_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F, contracts));
+    return exactlyOne(choose(ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F, contracts));
 }
 
 export function ARCAux_updateFSByISA(isa, fs) {
@@ -44,9 +50,9 @@ export function ARCAux_updateFSByISA(isa, fs) {
         const inv = isa;
         patternInput = [toArray(inv.StudyIdentifiers), toArray(inv.AssayIdentifiers)];
     }
-    const assays = createAssaysFolder(map(createAssayFolder, patternInput[1]));
-    const studies = createStudiesFolder(map(createStudyFolder, patternInput[0]));
-    const investigation = createInvestigationFile();
+    const assays = FileSystemTree.createAssaysFolder(map((assayName) => FileSystemTree.createAssayFolder(assayName), patternInput[1]));
+    const studies = FileSystemTree.createStudiesFolder(map((studyName) => FileSystemTree.createStudyFolder(studyName), patternInput[0]));
+    const investigation = FileSystemTree.createInvestigationFile();
     let tree_1;
     const tree = FileSystemTree.createRootFolder([investigation, assays, studies]);
     tree_1 = FileSystem.create({
@@ -56,8 +62,8 @@ export function ARCAux_updateFSByISA(isa, fs) {
 }
 
 export function ARCAux_updateFSByCWL(cwl, fs) {
-    const workflows = createWorkflowsFolder([]);
-    const runs = createRunsFolder([]);
+    const workflows = FileSystemTree.createWorkflowsFolder([]);
+    const runs = FileSystemTree.createRunsFolder([]);
     let tree_1;
     const tree = FileSystemTree.createRootFolder([workflows, runs]);
     tree_1 = FileSystem.create({
@@ -113,7 +119,7 @@ export class ARC {
         const assayFolderPath = getAssayFolderPath(assayIdentifier);
         const filteredPaths = paths.filter((p) => !(p.indexOf(assayFolderPath) === 0));
         this$.SetFilePaths(filteredPaths);
-        const collection = toList(delay(() => append(singleton(ARCtrl_ISA_ArcAssay__ArcAssay_ToDeleteContract(assay)), delay(() => append(singleton(ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(isa)), delay(() => map_1(ARCtrl_ISA_ArcStudy__ArcStudy_ToUpdateContract, studies)))))));
+        const collection = toList(delay(() => append(singleton(ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(assay)), delay(() => append(singleton(ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(isa)), delay(() => map_1(ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, studies)))))));
         return Array.from(collection);
     }
     RemoveStudy(studyIdentifier) {
@@ -131,7 +137,7 @@ export class ARC {
         const studyFolderPath = getStudyFolderPath(studyIdentifier);
         const filteredPaths = paths.filter((p) => !(p.indexOf(studyFolderPath) === 0));
         this$.SetFilePaths(filteredPaths);
-        const collection = ofArray([Contract.createDelete(studyFolderPath), ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(isa)]);
+        const collection = ofArray([Contract.createDelete(studyFolderPath), ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(isa)]);
         return Array.from(collection);
     }
     static fromFilePaths(filePaths) {
@@ -219,7 +225,7 @@ export class ARC {
             inv.StaticHash = (inv.GetLightHashCode() | 0);
             iterate((s) => {
                 s.StaticHash = (s.GetLightHashCode() | 0);
-                addToDict(workbooks, Study_fileNameFromIdentifier(s.Identifier), ["ISA_Study", ARCtrl_ISA_ArcStudy__ArcStudy_toFsWorkbook_Static_Z2A9662E9(s)]);
+                addToDict(workbooks, Study_fileNameFromIdentifier(s.Identifier), ["ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7(s)]);
             }, inv.Studies);
             iterate((a) => {
                 a.StaticHash = (safeHash(a) | 0);
@@ -245,17 +251,17 @@ export class ARC {
         const matchValue = this$.ISA;
         return (matchValue != null) ? (((inv = matchValue, inv.StaticHash === 0)) ? ((inv_1 = matchValue, this$.GetWriteContracts(isLight_1))) : ((inv_2 = matchValue, toArray(delay(() => {
             const hash = inv_2.GetLightHashCode() | 0;
-            return append((inv_2.StaticHash !== hash) ? singleton(ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(inv_2, isLight_1)) : empty(), delay(() => {
+            return append((inv_2.StaticHash !== hash) ? singleton(ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(inv_2, isLight_1)) : empty(), delay(() => {
                 inv_2.StaticHash = (hash | 0);
                 return append(collect((s) => {
                     const hash_1 = s.GetLightHashCode() | 0;
-                    return append((s.StaticHash === 0) ? ARCtrl_ISA_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(s, true) : ((s.StaticHash !== hash_1) ? singleton(ARCtrl_ISA_ArcStudy__ArcStudy_ToUpdateContract(s)) : empty()), delay(() => {
+                    return append((s.StaticHash === 0) ? ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(s, true) : ((s.StaticHash !== hash_1) ? singleton(ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(s)) : empty()), delay(() => {
                         s.StaticHash = (hash_1 | 0);
                         return empty();
                     }));
                 }, inv_2.Studies), delay(() => collect((a) => {
                     const hash_2 = safeHash(a) | 0;
-                    return append((a.StaticHash === 0) ? ARCtrl_ISA_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(a, true) : ((a.StaticHash !== hash_2) ? singleton(ARCtrl_ISA_ArcAssay__ArcAssay_ToUpdateContract(a)) : empty()), delay(() => {
+                    return append((a.StaticHash === 0) ? ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(a, true) : ((a.StaticHash !== hash_2) ? singleton(ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(a)) : empty()), delay(() => {
                         a.StaticHash = (hash_2 | 0);
                         return empty();
                     }));
@@ -345,13 +351,25 @@ export class ARC {
             Compare: comparePrimitives,
         });
     }
+    static fromROCrateJsonString(s) {
+        let matchValue;
+        return new ARC((matchValue = fromString(decoder_1, s), (matchValue.tag === 1) ? (() => {
+            throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+        })() : matchValue.fields[0]));
+    }
+    static toROCrateJsonString(spaces) {
+        return (obj) => {
+            const value = encoder(value_2(obj.ISA));
+            return toString(defaultSpaces(spaces), value);
+        };
+    }
 }
 
 export function ARC_$reflection() {
     return class_type("ARCtrl.ARC", void 0, ARC);
 }
 
-export function ARC_$ctor_81B80F4(isa, cwl, fs) {
+export function ARC_$ctor_79978BA1(isa, cwl, fs) {
     return new ARC(isa, cwl, fs);
 }
 

package/{Contracts/Contracts.ARCtrl.js → Contract/ARC.js}

@@ -1,6 +1,8 @@
 import { split as split_1 } from "../FileSystem/Path.js";
-import { $007CStudyPath$007C_$007C, $007CAssayPath$007C_$007C, $007CInvestigationPath$007C_$007C } from "./Contracts.ArcTypes.js";
-import { Contract } from "../Contract/Contract.js";
+import { $007CInvestigationPath$007C_$007C } from "./ArcInvestigation.js";
+import { Contract } from "./Contract.js";
+import { $007CAssayPath$007C_$007C } from "./ArcAssay.js";
+import { $007CStudyPath$007C_$007C } from "./ArcStudy.js";
 
 /**
  * Tries to create READ contract with DTOType = ISA_Assay, ISA_Study or ISA_Investigation from given path relative to ARC root.

package/Contract/ArcAssay.js

@@ -0,0 +1,102 @@
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { getAssayFolderPath, combineMany } from "../FileSystem/Path.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { Assay_fileNameFromIdentifier } from "../Core/Helper/Identifier.js";
+import { Contract } from "./Contract.js";
+import { fromFsWorkbook, toFsWorkbook } from "../Spreadsheet/ArcAssay.js";
+import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { FileSystemTree } from "../FileSystem/FileSystemTree.js";
+
+export function $007CAssayPath$007C_$007C(input) {
+    let matchResult;
+    if (!equalsWith((x, y) => (x === y), input, defaultOf()) && (input.length === 3)) {
+        if (item(0, input) === "assays") {
+            if (item(2, input) === "isa.assay.xlsx") {
+                matchResult = 0;
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0: {
+            const anyAssayName = item(1, input);
+            return combineMany(input);
+        }
+        default:
+            return void 0;
+    }
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$, WithFolder) {
+    const withFolder = defaultArg(WithFolder, false);
+    const path = Assay_fileNameFromIdentifier(this$.Identifier);
+    const c = Contract.createCreate(path, "ISA_Assay", toFsWorkbook(this$));
+    return toArray(delay(() => {
+        let folderFS;
+        return append(withFolder ? ((folderFS = FileSystemTree.createAssayFolder(this$.Identifier), collect((p) => ((p !== path) ? singleton(Contract.createCreate(p, "PlainText")) : empty()), folderFS.ToFilePaths(false)))) : empty(), delay(() => singleton(c)));
+    }));
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$) {
+    const path = Assay_fileNameFromIdentifier(this$.Identifier);
+    return Contract.createUpdate(path, "ISA_Assay", toFsWorkbook(this$));
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$) {
+    const path = getAssayFolderPath(this$.Identifier);
+    return Contract.createDelete(path);
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_toDeleteContract_Static_1501C0F8(assay) {
+    return ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(assay);
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay, WithFolder) {
+    return ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(assay, unwrap(WithFolder));
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_toUpdateContract_Static_1501C0F8(assay) {
+    return ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(assay);
+}
+
+export function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c) {
+    let matchResult, fsworkbook;
+    if (c.Operation === "READ") {
+        if (c.DTOType != null) {
+            if (c.DTOType === "ISA_Assay") {
+                if (c.DTO != null) {
+                    matchResult = 0;
+                    fsworkbook = c.DTO;
+                }
+                else {
+                    matchResult = 1;
+                }
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0:
+            return fromFsWorkbook(fsworkbook);
+        default:
+            return void 0;
+    }
+}
+

package/Contract/ArcInvestigation.js

@@ -0,0 +1,78 @@
+import { combineMany } from "../FileSystem/Path.js";
+import { item, equalsWith } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { fromFsWorkbook, toFsWorkbook, toLightFsWorkbook } from "../Spreadsheet/ArcInvestigation.js";
+import { Contract } from "./Contract.js";
+
+export function $007CInvestigationPath$007C_$007C(input) {
+    let matchResult;
+    if (!equalsWith((x, y) => (x === y), input, defaultOf()) && (input.length === 1)) {
+        if (item(0, input) === "isa.investigation.xlsx") {
+            matchResult = 0;
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0:
+            return combineMany(input);
+        default:
+            return void 0;
+    }
+}
+
+export function ARCtrl_ArcInvestigation__ArcInvestigation_ToCreateContract_6FCE9E49(this$, isLight) {
+    const converter = defaultArg(isLight, true) ? (toLightFsWorkbook) : (toFsWorkbook);
+    return Contract.createCreate("isa.investigation.xlsx", "ISA_Investigation", converter(this$));
+}
+
+export function ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(this$, isLight) {
+    const converter = defaultArg(isLight, true) ? (toLightFsWorkbook) : (toFsWorkbook);
+    return Contract.createUpdate("isa.investigation.xlsx", "ISA_Investigation", converter(this$));
+}
+
+export function ARCtrl_ArcInvestigation__ArcInvestigation_toCreateContract_Static_23B73268(inv, isLight) {
+    return ARCtrl_ArcInvestigation__ArcInvestigation_ToCreateContract_6FCE9E49(inv, unwrap(isLight));
+}
+
+export function ARCtrl_ArcInvestigation__ArcInvestigation_toUpdateContract_Static_23B73268(inv, isLight) {
+    return ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(inv, unwrap(isLight));
+}
+
+export function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c) {
+    let matchResult, fsworkbook;
+    if (c.Operation === "READ") {
+        if (c.DTOType != null) {
+            if (c.DTOType === "ISA_Investigation") {
+                if (c.DTO != null) {
+                    matchResult = 0;
+                    fsworkbook = c.DTO;
+                }
+                else {
+                    matchResult = 1;
+                }
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0:
+            return fromFsWorkbook(fsworkbook);
+        default:
+            return void 0;
+    }
+}
+

package/Contract/ArcStudy.js

@@ -0,0 +1,102 @@
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { getStudyFolderPath, combineMany } from "../FileSystem/Path.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { Study_fileNameFromIdentifier } from "../Core/Helper/Identifier.js";
+import { Contract } from "./Contract.js";
+import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7 } from "../Spreadsheet/ArcStudy.js";
+import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { FileSystemTree } from "../FileSystem/FileSystemTree.js";
+
+export function $007CStudyPath$007C_$007C(input) {
+    let matchResult;
+    if (!equalsWith((x, y) => (x === y), input, defaultOf()) && (input.length === 3)) {
+        if (item(0, input) === "studies") {
+            if (item(2, input) === "isa.study.xlsx") {
+                matchResult = 0;
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0: {
+            const anyStudyName = item(1, input);
+            return combineMany(input);
+        }
+        default:
+            return void 0;
+    }
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$, WithFolder) {
+    const withFolder = defaultArg(WithFolder, false);
+    const path = Study_fileNameFromIdentifier(this$.Identifier);
+    const c = Contract.createCreate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7(this$));
+    return toArray(delay(() => {
+        let folderFS;
+        return append(withFolder ? ((folderFS = FileSystemTree.createStudiesFolder([FileSystemTree.createStudyFolder(this$.Identifier)]), collect((p) => ((p !== path) ? singleton(Contract.createCreate(p, "PlainText")) : empty()), folderFS.ToFilePaths(false)))) : empty(), delay(() => singleton(c)));
+    }));
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this$) {
+    const path = Study_fileNameFromIdentifier(this$.Identifier);
+    return Contract.createUpdate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7(this$));
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_ToDeleteContract(this$) {
+    const path = getStudyFolderPath(this$.Identifier);
+    return Contract.createDelete(path);
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_toDeleteContract_Static_1680536E(study) {
+    return ARCtrl_ArcStudy__ArcStudy_ToDeleteContract(study);
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_toCreateContract_Static_Z76BBA099(study, WithFolder) {
+    return ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(study, unwrap(WithFolder));
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_toUpdateContract_Static_1680536E(study) {
+    return ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(study);
+}
+
+export function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c) {
+    let matchResult, fsworkbook;
+    if (c.Operation === "READ") {
+        if (c.DTOType != null) {
+            if (c.DTOType === "ISA_Study") {
+                if (c.DTO != null) {
+                    matchResult = 0;
+                    fsworkbook = c.DTO;
+                }
+                else {
+                    matchResult = 1;
+                }
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0:
+            return ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fsworkbook);
+        default:
+            return void 0;
+    }
+}
+

package/Contract/Contract.js

@@ -1,6 +1,6 @@
-import { Record } from "../fable_modules/fable-library-js.4.13.0/Types.js";
-import { class_type, option_type, record_type, array_type, string_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
+import { Record } from "../fable_modules/fable-library-js.4.16.0/Types.js";
+import { class_type, option_type, record_type, array_type, string_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
 
 export class CLITool extends Record {
     constructor(Name, Arguments) {

package/{Contracts/Contracts.Git.js → Contract/Git.js}

@@ -1,9 +1,9 @@
-import { Contract, CLITool } from "../Contract/Contract.js";
+import { Contract, CLITool } from "./Contract.js";
 import { dgi } from "../FileSystem/DefaultGitignore.js";
-import { class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { value, defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
-import { replace } from "../fable_modules/fable-library-js.4.13.0/String.js";
-import { empty, singleton, append, delay, toArray } from "../fable_modules/fable-library-js.4.13.0/Seq.js";
+import { class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { value, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { replace } from "../fable_modules/fable-library-js.4.16.0/String.js";
+import { empty, singleton, append, delay, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
 
 export function gitWithArgs(arguments$) {
     return CLITool.create("git", arguments$);