@nextage/omics-lib 1.0.2

package/build/utils/functs.js

@@ -0,0 +1,128 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.pathExists = pathExists;
+exports.getAttr = getAttr;
+exports.setAttr = setAttr;
+exports.findFilesRecursive = findFilesRecursive;
+exports.setTenant = setTenant;
+exports.getTenant = getTenant;
+exports.validateUrl = validateUrl;
+const lodash_1 = __importDefault(require("lodash"));
+const node_fs_1 = __importDefault(require("node:fs"));
+const node_path_1 = __importDefault(require("node:path"));
+const validator_1 = __importDefault(require("validator"));
+// /**
+//  * 
+//  * @param item 
+//  * @returns 
+//  */
+// export function docToAttrs(item: BaseMongoDoc, getters: boolean = true): NxObject | null {
+//   const obj = item?.toObject({ getters });
+//   if (!obj)
+//     return null;
+//   obj.id = obj._id?.toString();
+//   return obj;
+// }
+/**
+ *
+ * @param path
+ * @returns
+ */
+async function pathExists(path = '') {
+    if (!path)
+        return false;
+    try {
+        await node_fs_1.default.promises.access(path);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ *
+ * @param object
+ * @param path
+ */
+function getAttr(object, path) {
+    return lodash_1.default.get(object, path);
+}
+/**
+ *
+ * @param object
+ * @param path
+ * @param value
+ */
+function setAttr(object, path, value) {
+    return lodash_1.default.set(object, path, value);
+}
+/**
+ * Scan recoursively a directory to find files ending with fname
+ * @param dir Directory to use to explore
+ */
+function findFilesRecursive(dir, fname) {
+    const initFiles = [];
+    const files = node_fs_1.default.readdirSync(dir);
+    for (const file of files) {
+        const fullPath = node_path_1.default.join(dir, file);
+        if (node_fs_1.default.statSync(fullPath).isDirectory())
+            initFiles.push(...findFilesRecursive(fullPath, fname)); // Recursion for subdirectories.
+        else if (file.includes(fname) && !file.includes('init.d.') && !file.endsWith('.map'))
+            initFiles.push(fullPath); // Adds file
+    }
+    return initFiles;
+}
+/**
+ * Sets the tenantId on the given payload based on the user's role and organizations.
+ * - Normal users: tenantId is always set to their first organization
+ * - Admin users (CONFIG_ROLES):
+ *     - If applyDefaultForAdmin = false → can access all tenants
+ *     - If applyDefaultForAdmin = true and tenantId not provided → tenantId set to first org (subset view)
+ */
+function setTenant(item, user, applyDefaultForAdmin = false) {
+    // const isAdmin  = user?.hasRole(CONFIG_ROLES);
+    // // Admins who can see all tenants or already have tenantId specified → exit
+    // if (isAdmin && (!applyDefaultForAdmin || item.tenantId))
+    //   return;
+    // if (!user?.organizations?.length)
+    //   throw new Error('Cannot proceed: organization not set');
+    // // Admin with applyDefaultForAdmin=true and tenantId absent
+    // // OR normal user → force tenantId
+    // item.tenantId = user.organizations[0].id;
+}
+/**
+ *
+ * @param user
+ * @returns
+ */
+function getTenant(user) {
+    return '';
+    // if (!user?.organizations?.length)
+    //   throw new Error('Cannot proceed: organization not set');
+    // return user.organizations[0].id;
+}
+/**
+ *
+ * @param input
+ * @returns
+ */
+function validateUrl(input) {
+    if (!validator_1.default.isURL(input, {
+        protocols: ['http', 'https'],
+        require_protocol: true,
+        require_valid_protocol: true,
+        allow_underscores: false,
+        allow_trailing_dot: false,
+        allow_protocol_relative_urls: false
+    })) {
+        throw new Error('Invalid URL');
+    }
+    const parsed = new URL(input);
+    if (parsed.hostname === 'localhost' || parsed.hostname === '127.0.0.1')
+        throw new Error('Forbidden URL');
+    return parsed.toString();
+}
+//# sourceMappingURL=functs.js.map

package/build/utils/functs.js.map

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package/build/utils/index.d.ts

@@ -0,0 +1,3 @@
+export * from './express';
+export * from './functs';
+//# sourceMappingURL=index.d.ts.map

package/build/utils/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/utils/index.ts"],"names":[],"mappings":"AAAA,cAAc,WAAW,CAAC;AAC1B,cAAc,UAAU,CAAC"}

package/build/utils/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./express"), exports);
+__exportStar(require("./functs"), exports);
+//# sourceMappingURL=index.js.map

package/build/utils/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/utils/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,4CAA0B;AAC1B,2CAAyB"}

package/package.json

@@ -0,0 +1,66 @@
+{
+  "name": "@nextage/omics-lib",
+  "version": "1.0.2",
+  "main": "./build/index.js",
+  "types": "./build/index.d.ts",
+  "files": [
+    "build/**/*"
+  ],
+  "scripts": {
+    "clean": "del ./build/*",
+    "build": "npm run clean && tsc",
+    "pub": "git add . && git commit -m \"App Library updates\" && npm version patch && npm run build && npm publish"
+  },
+  "keywords": [],
+  "author": "",
+  "license": "ISC",
+  "description": "",
+  "dependencies": {
+    "@types/cookie-parser": "^1.4.7",
+    "@types/csurf": "^1.11.5",
+    "@types/express": "^4.17.21",
+    "@types/express-jwt": "^7.4.2",
+    "@types/express-rate-limit": "^6.0.0",
+    "@types/express-session": "^1.18.2",
+    "@types/express-validator": "^3.0.0",
+    "@types/helmet": "^4.0.0",
+    "@types/i18n": "^0.13.12",
+    "@types/lodash": "^4.17.24",
+    "@types/morgan": "^1.9.9",
+    "@types/passport": "^1.0.16",
+    "@types/passport-local": "^1.0.38",
+    "@types/validator": "^13.15.10",
+    "@types/winston": "^2.4.4",
+    "@types/ws": "^8.5.12",
+    "cookie-parser": "^1.4.6",
+    "csurf": "^1.11.0",
+    "dotenv": "^16.4.5",
+    "express": "^4.19.2",
+    "express-jwt": "^8.4.1",
+    "express-rate-limit": "^7.4.0",
+    "express-session": "^1.18.2",
+    "express-validator": "^7.3.1",
+    "flatted": "^3.3.1",
+    "helmet": "^7.1.0",
+    "i18n": "^0.15.1",
+    "lodash": "^4.17.23",
+    "mongoose": "^9.3.0",
+    "mongoose-update-if-current": "^1.4.0",
+    "morgan": "^1.10.0",
+    "nats": "^2.29.3",
+    "openid-client": "^5.7.1",
+    "passport": "^0.7.0",
+    "passport-local": "^1.0.0",
+    "ts-node-dev": "^2.0.0",
+    "typescript": "^5.8.3",
+    "validator": "^13.15.26",
+    "winston": "^3.14.2",
+    "ws": "^8.18.0"
+  },
+  "devDependencies": {
+    "@types/jest": "^30.0.0",
+    "del-cli": "^6.0.0",
+    "jest": "^30.0.5",
+    "mongodb-memory-server": "^10.1.4"
+  }
+}