@nextage/omics-lib 1.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/constants.d.ts +57 -0
- package/build/constants.d.ts.map +1 -0
- package/build/constants.js +24 -0
- package/build/constants.js.map +1 -0
- package/build/enums.d.ts +26 -0
- package/build/enums.d.ts.map +1 -0
- package/build/enums.js +44 -0
- package/build/enums.js.map +1 -0
- package/build/errors/app-error.d.ts +13 -0
- package/build/errors/app-error.d.ts.map +1 -0
- package/build/errors/app-error.js +18 -0
- package/build/errors/app-error.js.map +1 -0
- package/build/errors/authentication-error.d.ts +6 -0
- package/build/errors/authentication-error.d.ts.map +1 -0
- package/build/errors/authentication-error.js +11 -0
- package/build/errors/authentication-error.js.map +1 -0
- package/build/errors/custom-error.d.ts +9 -0
- package/build/errors/custom-error.d.ts.map +1 -0
- package/build/errors/custom-error.js +11 -0
- package/build/errors/custom-error.js.map +1 -0
- package/build/errors/forbidden-error.d.ts +6 -0
- package/build/errors/forbidden-error.d.ts.map +1 -0
- package/build/errors/forbidden-error.js +11 -0
- package/build/errors/forbidden-error.js.map +1 -0
- package/build/errors/index.d.ts +5 -0
- package/build/errors/index.d.ts.map +1 -0
- package/build/errors/index.js +21 -0
- package/build/errors/index.js.map +1 -0
- package/build/index.d.ts +7 -0
- package/build/index.d.ts.map +1 -0
- package/build/index.js +23 -0
- package/build/index.js.map +1 -0
- package/build/interfaces.d.ts +54 -0
- package/build/interfaces.d.ts.map +1 -0
- package/build/interfaces.js +14 -0
- package/build/interfaces.js.map +1 -0
- package/build/models/genotype.d.ts +19 -0
- package/build/models/genotype.d.ts.map +1 -0
- package/build/models/genotype.js +34 -0
- package/build/models/genotype.js.map +1 -0
- package/build/models/index.d.ts +4 -0
- package/build/models/index.d.ts.map +1 -0
- package/build/models/index.js +20 -0
- package/build/models/index.js.map +1 -0
- package/build/models/sample.d.ts +19 -0
- package/build/models/sample.d.ts.map +1 -0
- package/build/models/sample.js +36 -0
- package/build/models/sample.js.map +1 -0
- package/build/models/variant.d.ts +19 -0
- package/build/models/variant.d.ts.map +1 -0
- package/build/models/variant.js +45 -0
- package/build/models/variant.js.map +1 -0
- package/build/routes/express.interfaces.d.ts +11 -0
- package/build/routes/express.interfaces.d.ts.map +1 -0
- package/build/routes/express.interfaces.js +10 -0
- package/build/routes/express.interfaces.js.map +1 -0
- package/build/routes/index.d.ts +3 -0
- package/build/routes/index.d.ts.map +1 -0
- package/build/routes/index.js +19 -0
- package/build/routes/index.js.map +1 -0
- package/build/routes/swagger.d.ts +13 -0
- package/build/routes/swagger.d.ts.map +1 -0
- package/build/routes/swagger.js +13 -0
- package/build/routes/swagger.js.map +1 -0
- package/build/routes/validators.d.ts +11 -0
- package/build/routes/validators.d.ts.map +1 -0
- package/build/routes/validators.js +17 -0
- package/build/routes/validators.js.map +1 -0
- package/build/services/index.d.ts +2 -0
- package/build/services/index.d.ts.map +1 -0
- package/build/services/index.js +18 -0
- package/build/services/index.js.map +1 -0
- package/build/services/password.d.ts +5 -0
- package/build/services/password.d.ts.map +1 -0
- package/build/services/password.js +20 -0
- package/build/services/password.js.map +1 -0
- package/build/types/genotype.d.ts +11 -0
- package/build/types/genotype.d.ts.map +1 -0
- package/build/types/genotype.js +3 -0
- package/build/types/genotype.js.map +1 -0
- package/build/types/index.d.ts +4 -0
- package/build/types/index.d.ts.map +1 -0
- package/build/types/index.js +20 -0
- package/build/types/index.js.map +1 -0
- package/build/types/sample.d.ts +13 -0
- package/build/types/sample.d.ts.map +1 -0
- package/build/types/sample.js +3 -0
- package/build/types/sample.js.map +1 -0
- package/build/types/variant.d.ts +22 -0
- package/build/types/variant.d.ts.map +1 -0
- package/build/types/variant.js +3 -0
- package/build/types/variant.js.map +1 -0
- package/build/utils/express.d.ts +37 -0
- package/build/utils/express.d.ts.map +1 -0
- package/build/utils/express.js +114 -0
- package/build/utils/express.js.map +1 -0
- package/build/utils/functs.d.ts +46 -0
- package/build/utils/functs.d.ts.map +1 -0
- package/build/utils/functs.js +128 -0
- package/build/utils/functs.js.map +1 -0
- package/build/utils/index.d.ts +3 -0
- package/build/utils/index.d.ts.map +1 -0
- package/build/utils/index.js +19 -0
- package/build/utils/index.js.map +1 -0
- package/package.json +66 -0
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@@ -0,0 +1,57 @@
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import { BaseRoles } from './enums';
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export declare const LICENSE_DATE_FORMAT = "YYYY-MM-DD";
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export declare const ADMIN_ROLES: BaseRoles[];
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export declare const CONFIG_ROLES: BaseRoles[];
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export declare const CONFIG_ORG_ROLES: BaseRoles[];
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export declare const MANAGER_ORG_ROLES: BaseRoles[];
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export declare const RES_CODE: {
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SUCCESS: {
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code: number;
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message: string;
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};
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MISSING_DATA: {
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code: number;
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message: string;
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};
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MISSING_CONFIG: {
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code: number;
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message: string;
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};
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INCORRECT_DATA: {
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code: number;
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message: string;
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};
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ALREADY_EXISTS: {
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code: number;
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message: string;
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};
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NOT_FOUND: {
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code: number;
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message: string;
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};
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FORBIDDEN: {
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code: number;
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message: string;
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};
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MISSING_MODULE: {
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code: number;
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message: string;
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};
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DECRYPT_ERR: {
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code: number;
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message: string;
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};
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GENERIC: {
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code: number;
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message: string;
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};
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AUTH_REQUIRED: {
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code: number;
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message: string;
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};
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LOGIN_ATTEMPTS: {
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code: number;
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message: string;
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};
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};
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//# sourceMappingURL=constants.d.ts.map
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{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAa,SAAS,CAAC;AAE3C,eAAO,MAAM,mBAAmB,eAAe,CAAC;AAEhD,eAAO,MAAM,WAAW,aAA+C,CAAC;AACxE,eAAO,MAAM,YAAY,aAA+C,CAAC;AACzE,eAAO,MAAM,gBAAgB,aAA4C,CAAC;AAC1E,eAAO,MAAM,iBAAiB,aAA+C,CAAC;AAE9E,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAapB,CAAC"}
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.RES_CODE = exports.MANAGER_ORG_ROLES = exports.CONFIG_ORG_ROLES = exports.CONFIG_ROLES = exports.ADMIN_ROLES = exports.LICENSE_DATE_FORMAT = void 0;
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const enums_1 = require("./enums");
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exports.LICENSE_DATE_FORMAT = 'YYYY-MM-DD';
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exports.ADMIN_ROLES = [enums_1.BaseRoles.SADMIN, enums_1.BaseRoles.ADMIN];
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exports.CONFIG_ROLES = [...exports.ADMIN_ROLES, enums_1.BaseRoles.CONFIG];
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exports.CONFIG_ORG_ROLES = [...exports.CONFIG_ROLES, enums_1.BaseRoles.ORG_CFG];
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exports.MANAGER_ORG_ROLES = [...exports.CONFIG_ORG_ROLES, enums_1.BaseRoles.ORG_MANAGER];
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exports.RES_CODE = {
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SUCCESS: { code: 10, message: 'success' },
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MISSING_DATA: { code: 20, message: 'missing data' },
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MISSING_CONFIG: { code: 21, message: 'missing config' },
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INCORRECT_DATA: { code: 23, message: 'incorrect data' },
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ALREADY_EXISTS: { code: 24, message: 'item already exists' },
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NOT_FOUND: { code: 25, message: 'not found' },
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FORBIDDEN: { code: 26, message: 'forbidden' },
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MISSING_MODULE: { code: 30, message: 'module does not exist' },
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DECRYPT_ERR: { code: 40, message: 'error decrypting data' },
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GENERIC: { code: 99, message: 'internal error' },
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AUTH_REQUIRED: { code: 27, message: 'authentication required' },
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LOGIN_ATTEMPTS: { code: 27, message: 'too many login attempts' }
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};
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//# sourceMappingURL=constants.js.map
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{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":";;;AAAA,mCAA2C;AAE9B,QAAA,mBAAmB,GAAG,YAAY,CAAC;AAEnC,QAAA,WAAW,GAAS,CAAC,iBAAS,CAAC,MAAM,EAAK,iBAAS,CAAC,KAAK,CAAC,CAAC;AAC3D,QAAA,YAAY,GAAQ,CAAC,GAAG,mBAAW,EAAO,iBAAS,CAAC,MAAM,CAAC,CAAC;AAC5D,QAAA,gBAAgB,GAAI,CAAC,GAAG,oBAAY,EAAM,iBAAS,CAAC,OAAO,CAAC,CAAC;AAC7D,QAAA,iBAAiB,GAAG,CAAC,GAAG,wBAAgB,EAAE,iBAAS,CAAC,WAAW,CAAC,CAAC;AAEjE,QAAA,QAAQ,GAAG;IACtB,OAAO,EAAS,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,SAAS,EAAE;IAChD,YAAY,EAAI,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,cAAc,EAAE;IACrD,cAAc,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,gBAAgB,EAAE;IACvD,cAAc,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,gBAAgB,EAAE;IACvD,cAAc,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,qBAAqB,EAAE;IAC5D,SAAS,EAAO,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,WAAW,EAAE;IAClD,SAAS,EAAO,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,WAAW,EAAE;IAClD,cAAc,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,uBAAuB,EAAE;IAC9D,WAAW,EAAK,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,uBAAuB,EAAE;IAC9D,OAAO,EAAS,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,gBAAgB,EAAE;IACvD,aAAa,EAAG,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,yBAAyB,EAAC;IAC/D,cAAc,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,yBAAyB,EAAC;CAChE,CAAC"}
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package/build/enums.d.ts
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export declare enum SecurityLogs {
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changePwdFailed = "changePwdFailed",
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changePwdSuccess = "changePwdSuccess",
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loginExpiredPwd = "loginExpiredPwd",
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loginInvalidPwd = "loginInvalidPwd",
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loginUnknownUser = "loginUnknownUser",
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loginUserNotActive = "loginUserNotActive",
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loginSuccess = "loginSuccess",
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loginAttempts = "loginAttempts",
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authRequired = "authRequired"
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}
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export declare enum SecurityLogLevel {
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info = "info",
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warning = "warn",
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error = "error",
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debug = "debug"
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}
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export declare enum BaseRoles {
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SADMIN = "SUPERADMIN",
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ADMIN = "ADMIN",
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CONFIG = "CONFIG",
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ORG_CFG = "ORG_CFG",
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ORG_MANAGER = "ORG_MANAGER",
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ORG_MEMBER = "ORG_MEMBER"
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}
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//# sourceMappingURL=enums.d.ts.map
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{"version":3,"file":"enums.d.ts","sourceRoot":"","sources":["../src/enums.ts"],"names":[],"mappings":"AAAA,oBAAY,YAAY;IACtB,eAAe,oBAAsB;IACrC,gBAAgB,qBAAsB;IACtC,eAAe,oBAAsB;IACrC,eAAe,oBAAsB;IACrC,gBAAgB,qBAAsB;IACtC,kBAAkB,uBAAsB;IACxC,YAAY,iBAAsB;IAClC,aAAa,kBAAsB;IACnC,YAAY,iBAAsB;CACnC;AAED,oBAAY,gBAAgB;IAC1B,IAAI,SAAY;IAChB,OAAO,SAAS;IAChB,KAAK,UAAY;IACjB,KAAK,UAAY;CAClB;AAgBD,oBAAY,SAAS;IACnB,MAAM,eAAoB;IAC1B,KAAK,UAAgB;IACrB,MAAM,WAAgB;IACtB,OAAO,YAAgB;IACvB,WAAW,gBAAgB;IAC3B,UAAU,eAAgB;CAC3B"}
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package/build/enums.js
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.BaseRoles = exports.SecurityLogLevel = exports.SecurityLogs = void 0;
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var SecurityLogs;
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(function (SecurityLogs) {
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SecurityLogs["changePwdFailed"] = "changePwdFailed";
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SecurityLogs["changePwdSuccess"] = "changePwdSuccess";
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SecurityLogs["loginExpiredPwd"] = "loginExpiredPwd";
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SecurityLogs["loginInvalidPwd"] = "loginInvalidPwd";
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SecurityLogs["loginUnknownUser"] = "loginUnknownUser";
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SecurityLogs["loginUserNotActive"] = "loginUserNotActive";
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SecurityLogs["loginSuccess"] = "loginSuccess";
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SecurityLogs["loginAttempts"] = "loginAttempts";
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SecurityLogs["authRequired"] = "authRequired";
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})(SecurityLogs || (exports.SecurityLogs = SecurityLogs = {}));
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var SecurityLogLevel;
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(function (SecurityLogLevel) {
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SecurityLogLevel["info"] = "info";
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SecurityLogLevel["warning"] = "warn";
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SecurityLogLevel["error"] = "error";
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SecurityLogLevel["debug"] = "debug";
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})(SecurityLogLevel || (exports.SecurityLogLevel = SecurityLogLevel = {}));
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// export enum AuthIssuer {
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// USER = 'user',
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// DEVICE = 'device',
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// INVITE = 'invite',
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// OID = 'openid'
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// }
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// export enum LOGIN_ERRORS {
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// USER_NOT_FOUND = 'userNotFound',
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// USER_NOT_ACTIVE = 'userNotActive',
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// LOGIN_FAILED = 'loginFailed',
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// EXPIRED = 'expired'
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// }
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var BaseRoles;
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(function (BaseRoles) {
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BaseRoles["SADMIN"] = "SUPERADMIN";
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BaseRoles["ADMIN"] = "ADMIN";
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BaseRoles["CONFIG"] = "CONFIG";
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BaseRoles["ORG_CFG"] = "ORG_CFG";
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BaseRoles["ORG_MANAGER"] = "ORG_MANAGER";
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BaseRoles["ORG_MEMBER"] = "ORG_MEMBER";
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})(BaseRoles || (exports.BaseRoles = BaseRoles = {}));
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//# sourceMappingURL=enums.js.map
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{"version":3,"file":"enums.js","sourceRoot":"","sources":["../src/enums.ts"],"names":[],"mappings":";;;AAAA,IAAY,YAUX;AAVD,WAAY,YAAY;IACtB,mDAAqC,CAAA;IACrC,qDAAsC,CAAA;IACtC,mDAAqC,CAAA;IACrC,mDAAqC,CAAA;IACrC,qDAAsC,CAAA;IACtC,yDAAwC,CAAA;IACxC,6CAAkC,CAAA;IAClC,+CAAmC,CAAA;IACnC,6CAAkC,CAAA;AACpC,CAAC,EAVW,YAAY,4BAAZ,YAAY,QAUvB;AAED,IAAY,gBAKX;AALD,WAAY,gBAAgB;IAC1B,iCAAgB,CAAA;IAChB,oCAAgB,CAAA;IAChB,mCAAiB,CAAA;IACjB,mCAAiB,CAAA;AACnB,CAAC,EALW,gBAAgB,gCAAhB,gBAAgB,QAK3B;AAED,2BAA2B;AAC3B,qBAAqB;AACrB,uBAAuB;AACvB,uBAAuB;AACvB,sBAAsB;AACtB,IAAI;AAEJ,6BAA6B;AAC7B,sCAAsC;AACtC,uCAAuC;AACvC,qCAAqC;AACrC,gCAAgC;AAChC,IAAI;AAEJ,IAAY,SAOX;AAPD,WAAY,SAAS;IACnB,kCAA0B,CAAA;IAC1B,4BAAqB,CAAA;IACrB,8BAAsB,CAAA;IACtB,gCAAuB,CAAA;IACvB,wCAA2B,CAAA;IAC3B,sCAA0B,CAAA;AAC5B,CAAC,EAPW,SAAS,yBAAT,SAAS,QAOpB"}
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
import { CustomError } from './custom-error';
|
|
2
|
+
export declare class AppError extends CustomError {
|
|
3
|
+
message: string;
|
|
4
|
+
statusCode: number;
|
|
5
|
+
extensions: {
|
|
6
|
+
code: string;
|
|
7
|
+
};
|
|
8
|
+
constructor(message: string);
|
|
9
|
+
serializeErrors(): {
|
|
10
|
+
message: string;
|
|
11
|
+
}[];
|
|
12
|
+
}
|
|
13
|
+
//# sourceMappingURL=app-error.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"app-error.d.ts","sourceRoot":"","sources":["../../src/errors/app-error.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAE7C,qBAAa,QAAS,SAAQ,WAAW;IAKpB,OAAO,EAAE,MAAM;IAHlC,UAAU,SAAO;IACjB,UAAU;;MAAyB;gBAEhB,OAAO,EAAE,MAAM;IAOlC,eAAe;;;CAGhB"}
|
|
@@ -0,0 +1,18 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.AppError = void 0;
|
|
4
|
+
const custom_error_1 = require("./custom-error");
|
|
5
|
+
class AppError extends custom_error_1.CustomError {
|
|
6
|
+
constructor(message) {
|
|
7
|
+
super(message || 'Application Error');
|
|
8
|
+
this.message = message;
|
|
9
|
+
this.statusCode = 400;
|
|
10
|
+
this.extensions = { code: 'APP_ERROR' };
|
|
11
|
+
Object.setPrototypeOf(this, AppError.prototype);
|
|
12
|
+
}
|
|
13
|
+
serializeErrors() {
|
|
14
|
+
return [{ message: this.message }];
|
|
15
|
+
}
|
|
16
|
+
}
|
|
17
|
+
exports.AppError = AppError;
|
|
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|
+
//# sourceMappingURL=app-error.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"app-error.js","sourceRoot":"","sources":["../../src/errors/app-error.ts"],"names":[],"mappings":";;;AAAA,iDAA6C;AAE7C,MAAa,QAAS,SAAQ,0BAAW;IAKvC,YAAmB,OAAe;QAEhC,KAAK,CAAC,OAAO,IAAI,mBAAmB,CAAC,CAAC;QAFrB,YAAO,GAAP,OAAO,CAAQ;QAHlC,eAAU,GAAG,GAAG,CAAC;QACjB,eAAU,GAAG,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC;QAMjC,MAAM,CAAC,cAAc,CAAC,IAAI,EAAE,QAAQ,CAAC,SAAS,CAAC,CAAC;IAClD,CAAC;IAED,eAAe;QACb,OAAO,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC;IACrC,CAAC;CACF;AAfD,4BAeC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"authentication-error.d.ts","sourceRoot":"","sources":["../../src/errors/authentication-error.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAE1C,qBAAa,mBAAoB,SAAQ,KAAK;IAE5C,UAAU,EAAE,SAAS,CAAC;gBAEV,OAAO,GAAE,MAAkC,EAAE,IAAI,GAAE,MAA2C;CAK3G"}
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.AuthenticationError = void 0;
|
|
4
|
+
class AuthenticationError extends Error {
|
|
5
|
+
constructor(message = 'Authentication required', i18n = 'messages.authentication.required') {
|
|
6
|
+
super(message);
|
|
7
|
+
this.extensions = { code: 401, i18n };
|
|
8
|
+
}
|
|
9
|
+
}
|
|
10
|
+
exports.AuthenticationError = AuthenticationError;
|
|
11
|
+
//# sourceMappingURL=authentication-error.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"authentication-error.js","sourceRoot":"","sources":["../../src/errors/authentication-error.ts"],"names":[],"mappings":";;;AAEA,MAAa,mBAAoB,SAAQ,KAAK;IAI5C,YAAY,UAAkB,yBAAyB,EAAE,OAAe,kCAAkC;QAExG,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,UAAU,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC;IACxC,CAAC;CACF;AATD,kDASC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"custom-error.d.ts","sourceRoot":"","sources":["../../src/errors/custom-error.ts"],"names":[],"mappings":"AAAA,8BAAsB,WAAY,SAAQ,KAAK;IAE7C,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;gBAEhB,OAAO,EAAE,MAAM;IAO3B,QAAQ,CAAC,eAAe,IAAI;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,EAAE;CAClE"}
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.CustomError = void 0;
|
|
4
|
+
class CustomError extends Error {
|
|
5
|
+
constructor(message) {
|
|
6
|
+
super(message);
|
|
7
|
+
Object.setPrototypeOf(this, CustomError.prototype);
|
|
8
|
+
}
|
|
9
|
+
}
|
|
10
|
+
exports.CustomError = CustomError;
|
|
11
|
+
//# sourceMappingURL=custom-error.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"custom-error.js","sourceRoot":"","sources":["../../src/errors/custom-error.ts"],"names":[],"mappings":";;;AAAA,MAAsB,WAAY,SAAQ,KAAK;IAI7C,YAAY,OAAe;QAEzB,KAAK,CAAC,OAAO,CAAC,CAAC;QAEf,MAAM,CAAC,cAAc,CAAC,IAAI,EAAE,WAAW,CAAC,SAAS,CAAC,CAAC;IACrD,CAAC;CAGF;AAZD,kCAYC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"forbidden-error.d.ts","sourceRoot":"","sources":["../../src/errors/forbidden-error.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAE1C,qBAAa,cAAe,SAAQ,KAAK;IAEvC,UAAU,EAAE,SAAS,CAAC;gBAEV,OAAO,GAAE,MAAoB,EAAE,IAAI,GAAE,MAA8C;CAKhG"}
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.ForbiddenError = void 0;
|
|
4
|
+
class ForbiddenError extends Error {
|
|
5
|
+
constructor(message = 'Forbidden', i18n = 'messages.authorization.accessDenied') {
|
|
6
|
+
super(message);
|
|
7
|
+
this.extensions = { code: 403, i18n };
|
|
8
|
+
}
|
|
9
|
+
}
|
|
10
|
+
exports.ForbiddenError = ForbiddenError;
|
|
11
|
+
//# sourceMappingURL=forbidden-error.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"forbidden-error.js","sourceRoot":"","sources":["../../src/errors/forbidden-error.ts"],"names":[],"mappings":";;;AAEA,MAAa,cAAe,SAAQ,KAAK;IAIvC,YAAY,UAAkB,WAAW,EAAE,OAAe,qCAAqC;QAE7F,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,UAAU,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC;IACxC,CAAC;CACF;AATD,wCASC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/errors/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAC;AAC5B,cAAc,wBAAwB,CAAC;AACvC,cAAc,mBAAmB,CAAC;AAClC,cAAc,gBAAgB,CAAC"}
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
+
}
|
|
8
|
+
Object.defineProperty(o, k2, desc);
|
|
9
|
+
}) : (function(o, m, k, k2) {
|
|
10
|
+
if (k2 === undefined) k2 = k;
|
|
11
|
+
o[k2] = m[k];
|
|
12
|
+
}));
|
|
13
|
+
var __exportStar = (this && this.__exportStar) || function(m, exports) {
|
|
14
|
+
for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
|
|
15
|
+
};
|
|
16
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
17
|
+
__exportStar(require("./app-error"), exports);
|
|
18
|
+
__exportStar(require("./authentication-error"), exports);
|
|
19
|
+
__exportStar(require("./forbidden-error"), exports);
|
|
20
|
+
__exportStar(require("./custom-error"), exports);
|
|
21
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/errors/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,8CAA4B;AAC5B,yDAAuC;AACvC,oDAAkC;AAClC,iDAA+B"}
|
package/build/index.d.ts
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAC;AAC5B,cAAc,SAAS,CAAC;AACxB,cAAc,UAAU,CAAC;AACzB,cAAc,SAAS,CAAC;AACxB,cAAc,cAAc,CAAC;AAC7B,cAAc,SAAS,CAAC"}
|
package/build/index.js
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
+
}
|
|
8
|
+
Object.defineProperty(o, k2, desc);
|
|
9
|
+
}) : (function(o, m, k, k2) {
|
|
10
|
+
if (k2 === undefined) k2 = k;
|
|
11
|
+
o[k2] = m[k];
|
|
12
|
+
}));
|
|
13
|
+
var __exportStar = (this && this.__exportStar) || function(m, exports) {
|
|
14
|
+
for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
|
|
15
|
+
};
|
|
16
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
17
|
+
__exportStar(require("./constants"), exports);
|
|
18
|
+
__exportStar(require("./enums"), exports);
|
|
19
|
+
__exportStar(require("./models"), exports);
|
|
20
|
+
__exportStar(require("./types"), exports);
|
|
21
|
+
__exportStar(require("./interfaces"), exports);
|
|
22
|
+
__exportStar(require("./utils"), exports);
|
|
23
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,8CAA4B;AAC5B,0CAAwB;AACxB,2CAAyB;AACzB,0CAAwB;AACxB,+CAA6B;AAC7B,0CAAwB"}
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
import { SecurityLogLevel } from './enums';
|
|
2
|
+
export type NxCallback<T> = (err: Error | null, res?: T) => void;
|
|
3
|
+
export interface SecurityLogData {
|
|
4
|
+
userId: string;
|
|
5
|
+
module: string;
|
|
6
|
+
method: string;
|
|
7
|
+
message?: string;
|
|
8
|
+
level?: SecurityLogLevel;
|
|
9
|
+
}
|
|
10
|
+
export interface EmailResult {
|
|
11
|
+
messageId?: string;
|
|
12
|
+
success: boolean;
|
|
13
|
+
statusCode?: number;
|
|
14
|
+
}
|
|
15
|
+
export type BaseDBItem = {
|
|
16
|
+
id?: string;
|
|
17
|
+
};
|
|
18
|
+
export interface BaseEntity extends BaseDBItem {
|
|
19
|
+
code?: string;
|
|
20
|
+
name?: string;
|
|
21
|
+
version?: number;
|
|
22
|
+
}
|
|
23
|
+
export interface Address {
|
|
24
|
+
street: string;
|
|
25
|
+
city: string;
|
|
26
|
+
postalCode: string;
|
|
27
|
+
country: string;
|
|
28
|
+
}
|
|
29
|
+
export interface ContactData {
|
|
30
|
+
email?: string;
|
|
31
|
+
secondaryEmail?: string;
|
|
32
|
+
pec?: string;
|
|
33
|
+
phone1?: string;
|
|
34
|
+
phone2?: string;
|
|
35
|
+
phone3?: string;
|
|
36
|
+
address?: Address;
|
|
37
|
+
}
|
|
38
|
+
export declare abstract class BaseUser {
|
|
39
|
+
id?: string;
|
|
40
|
+
username?: string;
|
|
41
|
+
roles?: string[];
|
|
42
|
+
active?: boolean;
|
|
43
|
+
}
|
|
44
|
+
export interface AppObject {
|
|
45
|
+
[key: string]: any;
|
|
46
|
+
}
|
|
47
|
+
export interface AppTypeObject<T> {
|
|
48
|
+
[key: string]: T;
|
|
49
|
+
}
|
|
50
|
+
export interface BankData {
|
|
51
|
+
iban?: string;
|
|
52
|
+
swift?: string;
|
|
53
|
+
}
|
|
54
|
+
//# sourceMappingURL=interfaces.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"interfaces.d.ts","sourceRoot":"","sources":["../src/interfaces.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,MAAM,SAAS,CAAC;AAE3C,MAAM,MAAM,UAAU,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,KAAK,GAAG,IAAI,EAAE,GAAG,CAAC,EAAE,CAAC,KAAK,IAAI,CAAA;AAEhE,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAI,MAAM,CAAC;IACjB,MAAM,EAAI,MAAM,CAAC;IACjB,MAAM,EAAI,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAI,gBAAgB,CAAC;CAC5B;AAED,MAAM,WAAW,WAAW;IAC1B,SAAS,CAAC,EAAG,MAAM,CAAC;IACpB,OAAO,EAAM,OAAO,CAAC;IACrB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,MAAM,UAAU,GAAG;IACvB,EAAE,CAAC,EAAE,MAAM,CAAC;CACb,CAAA;AAED,MAAM,WAAW,UAAW,SAAQ,UAAU;IAC5C,IAAI,CAAC,EAAK,MAAM,CAAC;IACjB,IAAI,CAAC,EAAK,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,OAAO;IACtB,MAAM,EAAM,MAAM,CAAC;IACnB,IAAI,EAAQ,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,CAAC,EAAW,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,GAAG,CAAC,EAAa,MAAM,CAAC;IACxB,MAAM,CAAC,EAAU,MAAM,CAAC;IACxB,MAAM,CAAC,EAAU,MAAM,CAAC;IACxB,MAAM,CAAC,EAAU,MAAM,CAAC;IACxB,OAAO,CAAC,EAAS,OAAO,CAAC;CAC1B;AAED,8BAAsB,QAAQ;IAC5B,EAAE,CAAC,EAAY,MAAM,CAAA;IACrB,QAAQ,CAAC,EAAM,MAAM,CAAC;IACtB,KAAK,CAAC,EAAS,MAAM,EAAE,CAAC;IACxB,MAAM,CAAC,EAAQ,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,SAAS;IACxB,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC;CACpB;AAED,MAAM,WAAW,aAAa,CAAC,CAAC;IAC9B,CAAC,GAAG,EAAE,MAAM,GAAG,CAAC,CAAC;CAClB;AAED,MAAM,WAAW,QAAQ;IACvB,IAAI,CAAC,EAAG,MAAM,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB"}
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.BaseUser = void 0;
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class BaseUser {
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}
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exports.BaseUser = BaseUser;
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// export interface NxUserContext {
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// user? : BaseUser;
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// evtItem? : any;
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// evtType? : ModelCrudEventType | UserCrudEventType;
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// userAgent? : string;
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// remoteAddress?: string;
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// }
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//# sourceMappingURL=interfaces.js.map
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{"version":3,"file":"interfaces.js","sourceRoot":"","sources":["../src/interfaces.ts"],"names":[],"mappings":";;;AA8CA,MAAsB,QAAQ;CAK7B;AALD,4BAKC;AAoBD,mCAAmC;AACnC,8BAA8B;AAC9B,yBAAyB;AACzB,4DAA4D;AAC5D,4BAA4B;AAC5B,4BAA4B;AAC5B,IAAI"}
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@@ -0,0 +1,19 @@
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import mongoose from 'mongoose';
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import { IGenotype } from '../types';
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export interface GenotypeAttrs extends IGenotype {
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createdAt?: Date;
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updatedAt?: Date;
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deletedAt?: Date;
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version?: number;
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}
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export interface GenotypeDoc extends mongoose.Document {
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createdAt?: Date;
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updatedAt?: Date;
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deletedAt?: Date;
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version: number;
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}
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export interface GenotypeModel extends mongoose.Model<GenotypeDoc> {
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build(attrs: GenotypeAttrs): GenotypeDoc;
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}
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export declare const Genotype: GenotypeModel;
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//# sourceMappingURL=genotype.d.ts.map
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{"version":3,"file":"genotype.d.ts","sourceRoot":"","sources":["../../src/models/genotype.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,SAAS,EAAE,MAAkB,UAAU,CAAC;AAEjD,MAAM,WAAW,aAAc,SAAQ,SAAS;IAC9C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAY,SAAQ,QAAQ,CAAC,QAAQ;IACpD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAc,SAAQ,QAAQ,CAAC,KAAK,CAAC,WAAW,CAAC;IAChE,KAAK,CAAC,KAAK,EAAE,aAAa,GAAG,WAAW,CAAC;CAC1C;AAgCD,eAAO,MAAM,QAAQ,eAAiE,CAAC"}
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@@ -0,0 +1,34 @@
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.Genotype = void 0;
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const mongoose_1 = __importDefault(require("mongoose"));
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const mongoose_update_if_current_1 = require("mongoose-update-if-current");
|
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|
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const schema = new mongoose_1.default.Schema({
|
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variantId: { type: String, required: true },
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sampleId: { type: String, required: true },
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sequencingSampleId: { type: String },
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GT: { type: String },
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VAF: { type: Number },
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DP: { type: Number },
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alleles: { type: [String] },
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createdAt: { type: Date },
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updatedAt: { type: Date },
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deletedAt: { type: Date }
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}, {
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toJSON: {
|
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transform(doc, ret) {
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ret.id = ret._id;
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delete ret._id;
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},
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},
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});
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schema.set('versionKey', 'version');
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schema.plugin(mongoose_update_if_current_1.updateIfCurrentPlugin);
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schema.statics.build = (attrs) => {
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return new exports.Genotype(attrs);
|
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|
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};
|
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exports.Genotype = mongoose_1.default.model('Genotype', schema);
|
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|
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//# sourceMappingURL=genotype.js.map
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1
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{"version":3,"file":"genotype.js","sourceRoot":"","sources":["../../src/models/genotype.ts"],"names":[],"mappings":";;;;;;AAAA,wDAAiD;AACjD,2EAAmE;AAqBnE,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,SAAS,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,QAAQ,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,GAAG,EAAiB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,OAAO,EAAa,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE;IACtC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;CACnC,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAoB,EAAE,EAAE;IAC9C,OAAO,IAAI,gBAAQ,CAAC,KAAK,CAAC,CAAC;AAC7B,CAAC,CAAC;AAEW,QAAA,QAAQ,GAAG,kBAAQ,CAAC,KAAK,CAA6B,UAAU,EAAE,MAAM,CAAC,CAAC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/models/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAC;AAC3B,cAAc,UAAU,CAAC;AACzB,cAAc,WAAW,CAAC"}
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
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|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
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|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
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|
+
}
|
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Object.defineProperty(o, k2, desc);
|
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}) : (function(o, m, k, k2) {
|
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+
if (k2 === undefined) k2 = k;
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|
+
o[k2] = m[k];
|
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|
+
}));
|
|
13
|
+
var __exportStar = (this && this.__exportStar) || function(m, exports) {
|
|
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|
+
for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
|
|
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|
+
};
|
|
16
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
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17
|
+
__exportStar(require("./genotype"), exports);
|
|
18
|
+
__exportStar(require("./sample"), exports);
|
|
19
|
+
__exportStar(require("./variant"), exports);
|
|
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|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/models/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,6CAA2B;AAC3B,2CAAyB;AACzB,4CAA0B"}
|
|
@@ -0,0 +1,19 @@
|
|
|
1
|
+
import mongoose from 'mongoose';
|
|
2
|
+
import { ISample } from '../types';
|
|
3
|
+
export interface SampleAttrs extends ISample {
|
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|
+
createdAt?: Date;
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|
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updatedAt?: Date;
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+
deletedAt?: Date;
|
|
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|
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version?: number;
|
|
8
|
+
}
|
|
9
|
+
export interface SampleDoc extends mongoose.Document {
|
|
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|
+
createdAt?: Date;
|
|
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|
+
updatedAt?: Date;
|
|
12
|
+
deletedAt?: Date;
|
|
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|
+
version: number;
|
|
14
|
+
}
|
|
15
|
+
export interface SampleModel extends mongoose.Model<SampleDoc> {
|
|
16
|
+
build(attrs: SampleAttrs): SampleDoc;
|
|
17
|
+
}
|
|
18
|
+
export declare const Sample: SampleModel;
|
|
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|
+
//# sourceMappingURL=sample.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../src/models/sample.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,OAAO,EAAE,MAAoB,UAAU,CAAC;AAEjD,MAAM,WAAW,WAAY,SAAQ,OAAO;IAC1C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,SAAU,SAAQ,QAAQ,CAAC,QAAQ;IAClD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAY,SAAQ,QAAQ,CAAC,KAAK,CAAC,SAAS,CAAC;IAC5D,KAAK,CAAC,KAAK,EAAE,WAAW,GAAG,SAAS,CAAC;CACtC;AAmCD,eAAO,MAAM,MAAM,aAA2D,CAAC"}
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.Sample = void 0;
|
|
7
|
+
const mongoose_1 = __importDefault(require("mongoose"));
|
|
8
|
+
const mongoose_update_if_current_1 = require("mongoose-update-if-current");
|
|
9
|
+
const ClinicalSchema = new mongoose_1.default.Schema({
|
|
10
|
+
diagnosis: { type: String },
|
|
11
|
+
snomedM: { type: String },
|
|
12
|
+
snomedT: { type: String },
|
|
13
|
+
tumorSite: { type: String }
|
|
14
|
+
}, { _id: false });
|
|
15
|
+
const schema = new mongoose_1.default.Schema({
|
|
16
|
+
biobankSampleId: { type: String, required: true, unique: true },
|
|
17
|
+
sequencingSampleId: { type: String, required: true, unique: true },
|
|
18
|
+
clinical: { type: ClinicalSchema },
|
|
19
|
+
createdAt: { type: Date },
|
|
20
|
+
updatedAt: { type: Date },
|
|
21
|
+
deletedAt: { type: Date }
|
|
22
|
+
}, {
|
|
23
|
+
toJSON: {
|
|
24
|
+
transform(doc, ret) {
|
|
25
|
+
ret.id = ret._id;
|
|
26
|
+
delete ret._id;
|
|
27
|
+
},
|
|
28
|
+
},
|
|
29
|
+
});
|
|
30
|
+
schema.set('versionKey', 'version');
|
|
31
|
+
schema.plugin(mongoose_update_if_current_1.updateIfCurrentPlugin);
|
|
32
|
+
schema.statics.build = (attrs) => {
|
|
33
|
+
return new exports.Sample(attrs);
|
|
34
|
+
};
|
|
35
|
+
exports.Sample = mongoose_1.default.model('Sample', schema);
|
|
36
|
+
//# sourceMappingURL=sample.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"sample.js","sourceRoot":"","sources":["../../src/models/sample.ts"],"names":[],"mappings":";;;;;;AAAA,wDAAiD;AACjD,2EAAmE;AAqBnE,MAAM,cAAc,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAAC;IACzC,SAAS,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IAC3B,OAAO,EAAI,EAAE,IAAI,EAAE,MAAM,EAAE;IAC3B,OAAO,EAAI,EAAE,IAAI,EAAE,MAAM,EAAE;IAC3B,SAAS,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;CAC5B,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAC;AAEnB,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,eAAe,EAAK,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE;IAClE,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE;IAClE,QAAQ,EAAY,EAAE,IAAI,EAAE,cAAc,EAAE;IAC5C,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;CACnC,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAkB,EAAE,EAAE;IAC5C,OAAO,IAAI,cAAM,CAAC,KAAK,CAAC,CAAC;AAC3B,CAAC,CAAC;AAEW,QAAA,MAAM,GAAG,kBAAQ,CAAC,KAAK,CAAyB,QAAQ,EAAE,MAAM,CAAC,CAAC"}
|