@neuralis/brain-core 0.1.0 → 0.2.0

package/package.json

@@ -1,13 +1,13 @@
 {
   "name": "@neuralis/brain-core",
-  "version": "0.1.0",
+  "version": "0.2.0",
   "license": "FSL-1.1-ALv2",
   "type": "module",
   "publishConfig": {
     "access": "public"
   },
   "engines": {
-    "node": ">=22.22.2"
+    "node": ">=26"
   },
   "main": "./dist/src/index.js",
   "types": "./dist/src/index.d.ts",
@@ -24,6 +24,14 @@
     "./runtime": {
       "types": "./dist/src/lifecycle.d.ts",
       "default": "./dist/src/lifecycle.js"
+    },
+    "./upgrade": {
+      "types": "./dist/scripts/embeddingLockV3.d.ts",
+      "default": "./dist/scripts/embeddingLockV3.js"
+    },
+    "./upgrade/vector-proof": {
+      "types": "./dist/scripts/vectorProofV1.d.ts",
+      "default": "./dist/scripts/vectorProofV1.js"
     }
   },
   "typesVersions": {
@@ -55,19 +63,19 @@
     "@codemirror/view": "^6.43.13",
     "@iconify-json/vscode-icons": "^1.2.81",
     "@iconify/react": "^6.0.2",
-    "@neuralis/package-system": "0.1.0",
+    "@neuralis/package-system": "0.2.0",
     "@qdrant/js-client-rest": "1.19.0",
     "@shikijs/engine-javascript": "^4.4.3",
     "@shikijs/langs": "^4.4.3",
     "@shikijs/themes": "^4.4.3",
     "react-diff-view": "^3.3.3",
     "shiki": "^4.4.3",
-    "simple-git": "^3.36.0"
+    "simple-git": "^4.0.2"
   },
   "peerDependencies": {
     "@aws-sdk/client-s3": "^3.975.0",
     "@aws-sdk/s3-request-presigner": "^3.975.0",
-    "@neuralis/agent-core": "0.1.0",
+    "@neuralis/agent-core": "0.2.0",
     "@tanstack/react-virtual": "^3.13.0",
     "lucide-react": "^1.47.0",
     "react": "^19.0.0",
@@ -248,7 +256,9 @@
           ".DS_Store",
           "**/.DS_Store",
           "**/logs/**",
-          "**/_summary-revisions/**"
+          "**/_summary-revisions/**",
+          "_cacache/**",
+          "**/_cacache/**"
         ],
         "defaultPermissions": {
           "default": {
@@ -574,10 +584,28 @@
         "envFallback": "BRAIN_DEBUG",
         "category": "brain"
       },
+      {
+        "key": "embeddingEnabled",
+        "label": "Embedding Enabled",
+        "description": "Allow embedding provider calls. Disabled mode keeps payload indexing and full-text search available; dense activation/backfill remains explicit.",
+        "type": "boolean",
+        "default": true,
+        "category": "brain"
+      },
+      {
+        "key": "embeddingRequestTimeoutMs",
+        "label": "Embedding Request Timeout (ms)",
+        "description": "Maximum time for an embedding response including its body. Raise this for slower local servers or large batches; timeout preserves payload indexing.",
+        "type": "number",
+        "default": 30000,
+        "category": "brain",
+        "min": 1000,
+        "max": 600000
+      },
       {
         "key": "embeddingModelId",
         "label": "Embedding Model",
-        "description": "Registry id of the active embedding model (see Vector sub-section)",
+        "description": "Registry id of the target embedding model; changing it requires an explicit generation rebuild",
         "type": "string",
         "default": "ollama:nomic-embed-text",
         "category": "vector"
@@ -799,6 +827,16 @@
         "min": 1,
         "max": 100
       },
+      {
+        "key": "brainSyncBinarySniffChars",
+        "label": "Sync Binary Sniff Window (chars)",
+        "description": "How many leading characters of a file without a known binary extension the sync checks for a NUL byte (git's binary rule). A file that has one is not indexed as text and is counted on the source's last-sync line; a point it left from an earlier sync is withdrawn on the next full sync. 0 turns the check off.",
+        "type": "number",
+        "default": 8192,
+        "category": "brain",
+        "min": 0,
+        "max": 1048576
+      },
       {
         "key": "brainSyncMaxMediaMb",
         "label": "Sync Max Media File Size (MB)",
@@ -1137,6 +1175,36 @@
         "min": 1000,
         "max": 60000
       },
+      {
+        "key": "brainSourcePackageReconcileMaxRoots",
+        "label": "Package Reconciliation Roots",
+        "description": "Maximum stored missing package roots physically verified per agent configuration request. Overflow remains unknown and preserves restrictions.",
+        "type": "number",
+        "default": 32,
+        "category": "brain",
+        "min": 1,
+        "max": 1000
+      },
+      {
+        "key": "brainSourcePackageReconcileMaxEntries",
+        "label": "Package Reconciliation Entries",
+        "description": "Maximum visited filesystem entries per package verification. Every directory and skipped entry consumes the budget; incomplete traversal never confirms deletion.",
+        "type": "number",
+        "default": 2000,
+        "category": "brain",
+        "min": 1,
+        "max": 100000
+      },
+      {
+        "key": "brainSourcePackageReconcileConcurrency",
+        "label": "Package Reconciliation Concurrency",
+        "description": "Maximum concurrent physical package-root verification probes. This maintenance runs from agent configuration, never at stream start.",
+        "type": "number",
+        "default": 2,
+        "category": "brain",
+        "min": 1,
+        "max": 16
+      },
       {
         "key": "brainDiscoveryInventoryTtlMs",
         "label": "Source-Package Inventory TTL (ms)",
@@ -1170,7 +1238,7 @@
       {
         "key": "vectorStoreWriteMaxRetries",
         "label": "Vector Store Write Max Retries",
-        "description": "How many times one Qdrant upsert request is repeated after a socket reset (ECONNRESET, UND_ERR_SOCKET, EPIPE, UND_ERR_CLOSED) — same points, nothing re-embedded. HTTP status, auth and size errors are never repeated. Read per write.",
+        "description": "How many times one Qdrant multi-point upsert request or scroll read is repeated after a socket reset (ECONNRESET, UND_ERR_SOCKET, EPIPE, UND_ERR_CLOSED) — same request, nothing re-embedded. HTTP status, auth and size errors are never repeated. Read per request.",
         "type": "number",
         "default": 2,
         "category": "brain",
@@ -1180,7 +1248,7 @@
       {
         "key": "vectorStoreWriteRetryDelayMs",
         "label": "Vector Store Write Retry Delay (ms)",
-        "description": "First backoff before repeating a reset Qdrant upsert; each further attempt waits 4x longer (250 → 1000 ms by default). Read per write.",
+        "description": "First backoff before repeating a reset Qdrant upsert or scroll; each further attempt waits 4x longer (250 → 1000 ms by default). Read per request.",
         "type": "number",
         "default": 250,
         "category": "brain",
@@ -1426,13 +1494,16 @@
       {
         "id": "source.sync.failed",
         "title": "Source sync failed",
-        "description": "A sync of a source you can read did not complete.",
+        "description": "A sync of a source you can read did not complete; the Sources panel names the source.",
         "subject": "source",
         "dataSchema": {
           "type": "object",
           "additionalProperties": false,
           "required": [
             "sourceSlug",
+            "title",
+            "nav",
+            "mode",
             "failureClass"
           ],
           "properties": {
@@ -1441,11 +1512,635 @@
               "minLength": 1,
               "maxLength": 200
             },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "mode": {
+              "type": "string",
+              "enum": [
+                "full",
+                "targeted",
+                "embedding"
+              ]
+            },
             "failureClass": {
               "type": "string",
               "enum": [
                 "sync_failed"
               ]
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "on",
+          "tone": "warning"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.sync.recovered",
+        "title": "Source sync recovered",
+        "description": "A source whose sync had failed completed again; it resolves the failure.",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title",
+            "nav",
+            "mode"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "mode": {
+              "type": "string",
+              "enum": [
+                "full",
+                "targeted",
+                "embedding"
+              ]
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "off",
+          "tone": "success",
+          "clears": [
+            "source.sync.failed"
+          ]
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.sync.completed",
+        "title": "Source sync completed",
+        "description": "A full sync of a source you can read completed.",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title",
+            "nav",
+            "mode"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "mode": {
+              "type": "string",
+              "enum": [
+                "full",
+                "targeted",
+                "embedding"
+              ]
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "off",
+          "tone": "success"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.sync.cancelled",
+        "title": "Source sync cancelled",
+        "description": "A sync of a source you can read was cancelled.",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title",
+            "nav",
+            "mode"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "mode": {
+              "type": "string",
+              "enum": [
+                "full",
+                "targeted",
+                "embedding"
+              ]
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "off",
+          "tone": "info"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.reindex.completed",
+        "title": "Source re-embed completed",
+        "description": "A forced re-embed of a source you can read completed.",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title",
+            "nav",
+            "mode"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "mode": {
+              "type": "string",
+              "enum": [
+                "full",
+                "targeted",
+                "embedding"
+              ]
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "off",
+          "tone": "success"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.embedding.degraded",
+        "title": "Semantic embedding pending",
+        "description": "A source's files are indexed and text-searchable, but their semantic embedding is owed (the provider was unavailable).",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title",
+            "nav"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "on",
+          "tone": "warning"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.embedding.recovered",
+        "title": "Semantic embedding caught up",
+        "description": "A source owes no semantic embedding any more; it resolves the pending warning.",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title",
+            "nav"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "off",
+          "tone": "success",
+          "clears": [
+            "source.embedding.degraded"
+          ]
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "source.deleted",
+        "title": "Source removed",
+        "description": "A source was removed from the project; it resolves every notification still open about it.",
+        "subject": "source",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "sourceSlug",
+            "title"
+          ],
+          "properties": {
+            "sourceSlug": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 200
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "off",
+          "tone": "info",
+          "clears": [
+            "source.sync.failed",
+            "source.sync.recovered",
+            "source.sync.completed",
+            "source.sync.cancelled",
+            "source.reindex.completed",
+            "source.embedding.degraded",
+            "source.embedding.recovered"
+          ]
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "pending.review.required",
+        "title": "Changes are waiting for review",
+        "description": "Files written in this project wait for review in the Changes view.",
+        "subject": "pending",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "nav"
+          ],
+          "properties": {
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
+            }
+          }
+        },
+        "requires": {
+          "features": [
+            "drive.read"
+          ]
+        },
+        "notify": {
+          "default": "on",
+          "tone": "info"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "pending.review.resolved",
+        "title": "Reviews were resolved",
+        "description": "Pending changes in this project were approved, dismissed, discarded or reverted.",
+        "subject": "pending",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "nav"
+          ],
+          "properties": {
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
+                    "nav"
+                  ],
+                  "properties": {
+                    "nav": {
+                      "type": "object"
+                    }
+                  }
+                }
+              }
             }
           }
         },
@@ -1454,11 +2149,305 @@
             "drive.read"
           ]
         },
+        "notify": {
+          "default": "off",
+          "tone": "success"
+        },
+        "dock": "brain-core.filesystem"
+      },
+      {
+        "id": "vector.rebuild.completed",
+        "title": "Embedding rebuild completed",
+        "description": "The rebuild you started switched the index to the target embedding model.",
+        "subject": "vector",
+        "dataSchema": {
+          "type": "object",
+          "additionalProperties": false,
+          "required": [
+            "action",
+            "title",
+            "nav"
+          ],
+          "properties": {
+            "action": {
+              "type": "string",
+              "enum": [
+                "dense-clear",
+                "migrate-indexes",
+                "apply-tuning",
+                "apply-quantization",
+                "enable-text-ranking",
+                "backfill-text-ranking",
+                "rebuild-generation"
+              ]
+            },
+            "title": {
+              "type": "string",
+              "minLength": 1,
+              "maxLength": 40
+            },
+            "nav": {
+              "type": "object",
+              "additionalProperties": false,
+              "required": [
+                "widgetType",
+                "initialState"
+              ],
+              "properties": {
+                "widgetType": {
+                  "type": "string",
+                  "enum": [
+                    "filesystem"
+                  ]
+                },
+                "initialState": {
+                  "type": "object",
+                  "additionalProperties": false,
+                  "required": [
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