@neuralis/brain-core 0.1.0 → 0.2.0

package/dist/src/vector/FilesystemVectorIndex.d.ts

@@ -1,3 +1,4 @@
+import type { SourceConfigPort } from '../connectors/types.js';
 /**
  * The ONE filesystem-specialised write boundary in front of a vector backend.
  *
@@ -52,18 +53,48 @@
 import type { FilesystemNode } from '../domain/types.js';
 import type { WriteMonitor } from '../usecases/writeMonitor.js';
 import type { DiscoveryInvalidation } from './discoveryInvalidation.js';
-import type { QueryPrefetch, VectorFilter, VectorIndexPort, VectorPoint, VectorReadProjection, VectorSearchHit } from './types.js';
+import type { QueryPrefetch, VectorBackend, VectorFilter, VectorIndexPort, VectorPoint, VectorReadProjection, VectorSearchHit } from './types.js';
 export declare class FilesystemVectorIndex implements VectorIndexPort<FilesystemNode> {
     #private;
     /** The wrapped backend — read by the wiring-identity test, never by product code. */
-    get backend(): VectorIndexPort<FilesystemNode>;
+    get backend(): VectorBackend<FilesystemNode>;
     /** The discovery generation registry, if one was wired. Read by the wiring test. */
     get discovery(): DiscoveryInvalidation | undefined;
     /** The per-uri write monitor, if one was wired. Read by the health route's usecase. */
     get writeMonitor(): WriteMonitor | undefined;
-    constructor(inner: VectorIndexPort<FilesystemNode>, discovery?: DiscoveryInvalidation, monitor?: WriteMonitor);
+    constructor(inner: VectorBackend<FilesystemNode> | FilesystemVectorIndex, discovery?: DiscoveryInvalidation, monitor?: WriteMonitor);
     ensureAgentCollection(agentId: string): Promise<void>;
     upsert(point: VectorPoint<FilesystemNode>): Promise<void>;
+    writeEpoch(): number;
+    exclusive<T>(run: () => Promise<T>): Promise<T>;
+    writePayload(point: Pick<VectorPoint<FilesystemNode>, 'id' | 'payload'>): Promise<void>;
+    /** Bind after project infra adopts the shared backend; all app stores share one coordinator. */
+    bindSourceConfigs(store: SourceConfigPort): void;
+    writePayloadBatch(points: Array<Pick<VectorPoint<FilesystemNode>, 'id' | 'payload'>>): Promise<void>;
+    conditionalUpsert(params: {
+        id: string;
+        vector: number[];
+        expected: Record<string, string | number | boolean | undefined>;
+        patch: Partial<FilesystemNode>;
+        authorize?: (current: FilesystemNode) => Promise<boolean>;
+        epoch?: number;
+    }): Promise<boolean>;
+    conditionalUpsertBatch(points: Array<{
+        id: string;
+        vector: number[];
+        expected: Record<string, string | number | boolean | undefined>;
+        patch: Partial<FilesystemNode>;
+        authorize?: (current: FilesystemNode) => Promise<boolean>;
+        epoch?: number;
+    }>): Promise<boolean[]>;
+    conditionalProof(params: {
+        id: string;
+        expected: Record<string, string | number | boolean | undefined>;
+        patch: Partial<FilesystemNode>;
+        activeGeneration: number;
+        authorize?: (current: FilesystemNode) => Promise<boolean>;
+        epoch?: number;
+    }): Promise<boolean>;
     retainPayload(point: Pick<VectorPoint<FilesystemNode>, 'id' | 'payload'>): Promise<void>;
     retrieve(id: string, projection?: VectorReadProjection): Promise<VectorPoint<FilesystemNode> | null>;
     scroll(params: {

package/dist/src/vector/FilesystemVectorIndex.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"FilesystemVectorIndex.d.ts","sourceRoot":"","sources":["../../../src/vector/FilesystemVectorIndex.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAE/D;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAkDG;AACH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAMzD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,6BAA6B,CAAC;AAChE,OAAO,KAAK,EAAE,qBAAqB,EAAuB,MAAM,4BAA4B,CAAC;AAC7F,OAAO,KAAK,EACV,aAAa,EACb,aAAa,EACb,YAAY,EACZ,eAAe,EACf,WAAW,EACX,oBAAoB,EACpB,eAAe,EAChB,MAAM,YAAY,CAAC;AAQpB,qBAAa,qBAAsB,YAAW,eAAe,CAAC,cAAc,CAAC;;IAQ3E,qFAAqF;IACrF,IAAI,OAAO,IAAI,aAAa,CAAC,cAAc,CAAC,CAE3C;IAED,oFAAoF;IACpF,IAAI,SAAS,IAAI,qBAAqB,GAAG,SAAS,CAEjD;IAED,uFAAuF;IACvF,IAAI,YAAY,IAAI,YAAY,GAAG,SAAS,CAE3C;IAED,YACE,KAAK,EAAE,aAAa,CAAC,cAAc,CAAC,GAAG,qBAAqB,EAC5D,SAAS,CAAC,EAAE,qBAAqB,EACjC,OAAO,CAAC,EAAE,YAAY,EAmEvB;IAoCD,qBAAqB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAEpD;IAEK,MAAM,CAAC,KAAK,EAAE,WAAW,CAAC,cAAc,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,CAW9D;IAED,UAAU,IAAI,MAAM,CAAoC;IAExD,SAAS,CAAC,CAAC,EAAE,GAAG,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAE9C;IAEK,YAAY,CAAC,KAAK,EAAE,IAAI,CAAC,WAAW,CAAC,cAAc,CAAC,EAAE,IAAI,GAAG,SAAS,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,CAG5F;IAoBD,gGAAgG;IAChG,iBAAiB,CAAC,KAAK,EAAE,gBAAgB,GAAG,IAAI,CAM/C;IAEK,iBAAiB,CAAC,MAAM,EAAE,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,cAAc,CAAC,EAAE,IAAI,GAAG,SAAS,CAAC,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,CAMzG;IAEK,iBAAiB,CAAC,MAAM,EAAE;QAC9B,EAAE,EAAE,MAAM,CAAC;QACX,MAAM,EAAE,MAAM,EAAE,CAAC;QACjB,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,GAAG,SAAS,CAAC,CAAC;QAChE,KAAK,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;QAC/B,SAAS,CAAC,EAAE,CAAC,OAAO,EAAE,cAAc,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;QAC1D,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC,OAAO,CAAC,CAEnB;IAEK,sBAAsB,CAAC,MAAM,EAAE,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,GAAG,SAAS,CAAC,CAAC;QAAC,KAAK,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;QAAC,SAAS,CAAC,EAAE,CAAC,OAAO,EAAE,cAAc,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC,GAAG,OAAO,CAAC,OAAO,EAAE,CAAC,CAE5Q;IAEK,gBAAgB,CAAC,MAAM,EAAE;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,GAAG,SAAS,CAAC,CAAC;QAAC,KAAK,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;QAAC,gBAAgB,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,CAAC,OAAO,EAAE,cAAc,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,OAAO,CAAC,OAAO,CAAC,CAGrQ;IA6CK,aAAa,CAAC,KAAK,EAAE,IAAI,CAAC,WAAW,CAAC,cAAc,CAAC,EAAE,IAAI,GAAG,SAAS,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,CAM7F;IAED,QAAQ,CAAC,EAAE,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,oBAAoB,GAAG,OAAO,CAAC,WAAW,CAAC,cAAc,CAAC,GAAG,IAAI,CAAC,CAEnG;IAED,MAAM,CAAC,MAAM,EAAE;QACb,MAAM,EAAE,YAAY,CAAC;QACrB,KAAK,EAAE,MAAM,CAAC;QACd,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;KAC1B,GAAG,OAAO,CAAC;QAAE,MAAM,EAAE,KAAK,CAAC,WAAW,CAAC,cAAc,CAAC,CAAC,CAAC;QAAC,UAAU,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC,CAE/E;IAED,MAAM,CAAC,MAAM,EAAE;QACb,MAAM,EAAE,MAAM,EAAE,CAAC;QACjB,MAAM,EAAE,YAAY,CAAC;QACrB,KAAK,EAAE,MAAM,CAAC;QACd,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;KAC1B,GAAG,OAAO,CAAC,KAAK,CAAC,eAAe,CAAC,cAAc,CAAC,CAAC,CAAC,CAElD;IAEK,cAAc,CAAC,MAAM,EAAE,YAAY,GAAG,OAAO,CAAC,MAAM,CAAC,CAmB1D;IAED,WAAW,CAAC,EAAE,CAAC,MAAM,EAAE,KAAK,CAAC,WAAW,CAAC,cAAc,CAAC,CAAC,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;IAE5E,KAAK,CAAC,EAAE,CAAC,MAAM,EAAE;QACf,QAAQ,EAAE,KAAK,CAAC,aAAa,CAAC,CAAC;QAC/B,MAAM,EAAE,KAAK,GAAG,MAAM,CAAC;QACvB,MAAM,EAAE,YAAY,CAAC;QACrB,KAAK,EAAE,MAAM,CAAC;QACd,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;KAC1B,KAAK,OAAO,CAAC,KAAK,CAAC,eAAe,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC;IAEtD,aAAa,CAAC,EAAE,CAAC,MAAM,EAAE,YAAY,KAAK,OAAO,CAAC,MAAM,CAAC,CAAC;IAE1D,KAAK,CAAC,EAAE,eAAe,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,CAAC;IAEjD,WAAW,CAAC,EAAE,eAAe,CAAC,cAAc,CAAC,CAAC,aAAa,CAAC,CAAC;CAC9D;AAED,qEAAqE;AACrE,qBAAa,+BAAgC,SAAQ,KAAK;IAE5C,QAAQ,CAAC,OAAO,EAAE,MAAM;IAAE,QAAQ,CAAC,UAAU,EAAE,MAAM;IAAE,QAAQ,CAAC,MAAM,EAAE,MAAM;IAD1F,QAAQ,CAAC,IAAI,EAAG,8BAA8B,CAAU;IACxD,YAAqB,OAAO,EAAE,MAAM,EAAW,UAAU,EAAE,MAAM,EAAW,MAAM,EAAE,MAAM,EAGzF;CACF"}

package/dist/src/vector/FilesystemVectorIndex.js

@@ -1,10 +1,19 @@
-import { searchableFilter } from '../usecases/vector/indexEligibility.js';
+import { searchableFilter, indexEligibilityReader } from '../usecases/vector/indexEligibility.js';
 import { stampEnrichment } from '../sync/categoryInference.js';
+import { nodeEmbeddingInputHash } from '../usecases/syncPointWrites.js';
 import { embedModelMarker, embeddingMarkerOf } from '../embeddings/models.js';
 import { peekActiveLock } from '../embeddings/lock.js';
 import { getGenerationMirror } from '../usecases/vector/rebuildGeneration.js';
+/** The dense proof a payload replacement carries forward from the stored point. */
+const PROOF_FIELDS = ['embed_model', 'embedding_status', 'embedding_input_hash', 'embedding_generation', 'embedding_updated_at'];
+/** What a late dense/proof commit re-reads: eligibility, the final authority and the proof — never the text. */
+const COMMIT_FIELDS = ['id', 'projectId', 'userId', 'agentId', 'uri', 'filename', 'folder_ancestors', 'category', 'status',
+    'recovery_only', 'modality', 'page', 'parent_id', 'content_hash', 'updatedAt', ...PROOF_FIELDS];
 export class FilesystemVectorIndex {
     #inner;
+    #coordinator;
+    #eligibility;
+    #sourceMutations;
     #discovery;
     #monitor;
     /** The wrapped backend — read by the wiring-identity test, never by product code. */
@@ -28,6 +37,8 @@ export class FilesystemVectorIndex {
         // shared port never silently drops its invalidation or its counts.
         const nested = inner instanceof FilesystemVectorIndex;
         this.#inner = nested ? inner.backend : inner;
+        this.#coordinator = writeCoordinators.get(this.#inner) ?? new WriteCoordinator();
+        writeCoordinators.set(this.#inner, this.#coordinator);
         this.#discovery = discovery ?? (nested ? inner.discovery : undefined);
         this.#monitor = monitor ?? (nested ? inner.writeMonitor : undefined);
         // The OPTIONAL members are mirrored only when the backend has them:
@@ -38,7 +49,7 @@ export class FilesystemVectorIndex {
         if (backend.upsertBatch) {
             this.upsertBatch = async (points) => {
                 let stamped = [];
-                return this.#mirrored(async () => {
+                return this.#coordinator.lease(false, () => this.#coordinator.points(points.map(point => point.id), () => this.#mirrored(async () => {
                     stamped = points.map(stampPoint);
                     this.#monitor?.record(stamped.map((p) => p.payload));
                     await this.#observed(stamped.map((p) => p.payload), async () => {
@@ -54,7 +65,7 @@ export class FilesystemVectorIndex {
                     for (const point of stamped)
                         if (!point.vector && point.payload.recovery_only)
                             mirror.afterRetention(point);
-                });
+                }, points.map(point => point.id))));
             };
         }
         if (backend.query) {
@@ -66,20 +77,22 @@ export class FilesystemVectorIndex {
         if (backend.facet) {
             this.facet = (params) => backend.facet(params);
         }
-        // Collection-level operator work writes no payload (index params, config, a
-        // sparse vector computed from the content already stored), so it passes
-        // through without a stamp or an invalidation.
+        // Collection work shares the exclusive epoch. Dense clear changes only
+        // proof status; index/tuning/sparse work does not change file content.
         if (backend.maintenance) {
             const maintenance = backend.maintenance;
             this.maintenance = {
                 generations: maintenance.generations,
+                // Dense clear takes the exclusive epoch PER PAGE: writes run between pages,
+                // and a late result embedded before a page was cleared is refused by its epoch.
+                ...(maintenance.clearDense ? { clearDense: (params) => this.exclusive(() => maintenance.clearDense(params)) } : {}),
                 report: params => maintenance.report({ filter: searchableFilter(params?.filter ?? {}) }),
                 readOptimizations: params => maintenance.readOptimizations(params),
-                migratePayloadIndexes: () => maintenance.migratePayloadIndexes(),
-                applyTuning: tuning => maintenance.applyTuning(tuning),
-                applyQuantization: mode => maintenance.applyQuantization(mode),
-                enableTextRanking: () => maintenance.enableTextRanking(),
-                backfillTextRanking: params => maintenance.backfillTextRanking({ ...params, filter: searchableFilter(params.filter ?? {}) }),
+                migratePayloadIndexes: () => this.exclusive(() => maintenance.migratePayloadIndexes()),
+                applyTuning: tuning => this.exclusive(() => maintenance.applyTuning(tuning)),
+                applyQuantization: mode => this.exclusive(() => maintenance.applyQuantization(mode)),
+                enableTextRanking: () => this.exclusive(() => maintenance.enableTextRanking()),
+                backfillTextRanking: params => this.exclusive(() => maintenance.backfillTextRanking({ ...params, filter: searchableFilter(params.filter ?? {}) })),
             };
         }
     }
@@ -98,7 +111,7 @@ export class FilesystemVectorIndex {
     /**
      * The mirror seam: with no rebuild running this is the write itself; during
      * one, the write runs inside the swap gate and its shadow copy is queued
-     * once it returned (a failed active write mirrors nothing).
+     * once it returned; partial failures queue bounded reconciliation debt.
      *
      * BOTH halves run inside the gate. The `embed_model` stamp and the retired-
      * generation refusal happen in `write` (the callers build their stamp there),
@@ -107,12 +120,18 @@ export class FilesystemVectorIndex {
      * shadow enqueue happens before the gate's in-flight count drops, so the
      * swap's drain cannot run between an active write and its mirror item.
      */
-    async #mirrored(write, mirror) {
+    async #mirrored(write, mirror, ids = []) {
         const active = getGenerationMirror();
         if (!active)
             return write();
         await active.primary(async () => {
-            await write();
+            try {
+                await write();
+            }
+            catch (error) {
+                active.afterUncertainWrite(ids);
+                throw error;
+            }
             mirror(active);
         });
     }
@@ -123,17 +142,132 @@ export class FilesystemVectorIndex {
         if (!point.vector && point.payload.recovery_only)
             return this.retainPayload(point);
         let stamped = point;
-        return this.#mirrored(async () => {
+        return this.#coordinator.lease(false, () => this.#coordinator.points([point.id], () => this.#mirrored(async () => {
             stamped = stampPoint(point);
             this.#monitor?.record([stamped.payload]);
             await this.#observed([stamped.payload], () => this.#inner.upsert(stamped));
-        }, (mirror) => mirror.afterUpsert([stamped]));
+        }, (mirror) => mirror.afterUpsert([stamped]), [point.id])));
+    }
+    writeEpoch() { return this.#coordinator.epoch; }
+    exclusive(run) {
+        return this.#coordinator.lease(true, run);
+    }
+    async writePayload(point) {
+        if (point.payload.recovery_only)
+            return this.retainPayload(point);
+        await this.#writePayloads([point]);
+    }
+    /** ONE backend read (the proof rides the backend's own pre-write read) + the write itself. */
+    async #writePayloads(points) {
+        const ids = points.map(point => point.id);
+        const written = new Map();
+        await this.#coordinator.lease(false, () => this.#coordinator.points(ids, () => this.#mirrored(async () => {
+            const enriched = points.map(point => stampPoint(point));
+            this.#monitor?.record(enriched.map(point => point.payload));
+            await this.#observed(enriched.map(point => point.payload), () => this.#inner.writePayloads(enriched, {
+                readFields: PROOF_FIELDS,
+                derive: (point, stored) => {
+                    const stamped = stampPayloadPoint(point, stored);
+                    written.set(stamped.id, stamped);
+                    return stamped.payload;
+                },
+            }));
+        }, mirror => mirror.afterUpsert([...written.values()]), ids)));
+    }
+    /** Bind after project infra adopts the shared backend; all app stores share one coordinator. */
+    bindSourceConfigs(store) {
+        if (!store.mutations)
+            throw new Error('SOURCE_CONFIG_COORDINATOR_REQUIRED');
+        if (this.#sourceMutations && this.#sourceMutations !== store.mutations)
+            throw new Error('FILESYSTEM_SOURCE_CONFIG_COORDINATOR_CHANGED');
+        if (this.#sourceMutations)
+            return;
+        this.#sourceMutations = store.mutations;
+        this.#eligibility = indexEligibilityReader(store);
+    }
+    async writePayloadBatch(points) {
+        if (!points.length)
+            return;
+        if (new Set(points.map(point => point.id)).size !== points.length)
+            throw new Error('DUPLICATE_PAYLOAD_BATCH_ID');
+        const ordinary = points.filter(point => !point.payload.recovery_only);
+        if (ordinary.length)
+            await this.#writePayloads(ordinary);
+        for (const point of points)
+            if (point.payload.recovery_only)
+                await this.retainPayload(point);
+    }
+    async conditionalUpsert(params) {
+        return (await this.conditionalUpsertBatch([params]))[0];
+    }
+    async conditionalUpsertBatch(points) {
+        return this.#conditionalWrites(points.map(point => ({ ...point, kind: 'dense' })));
+    }
+    async conditionalProof(params) {
+        if (params.patch.embedding_status !== 'missing' && params.patch.embedding_status !== 'stale')
+            throw new Error('INVALID_DEBT_PROOF_PATCH');
+        return (await this.#conditionalWrites([{ ...params, kind: 'proof' }]))[0];
+    }
+    async #conditionalWrites(points) {
+        if (!points.length)
+            return [];
+        if (new Set(points.map(point => point.id)).size !== points.length)
+            throw new Error('DUPLICATE_DENSE_BATCH_ID');
+        const proofFields = new Set(['embedding_status', 'embedding_input_hash', 'embedding_generation', 'embedding_updated_at', 'embed_model']);
+        if (points.some(point => Object.keys(point.patch).some(field => !proofFields.has(field))))
+            throw new Error('INVALID_EMBEDDING_PROOF_PATCH');
+        const written = points.map(() => false);
+        const committed = [];
+        await this.#coordinator.lease(false, () => this.#coordinator.points(points.map(point => point.id), () => this.#mirrored(() => {
+            const commit = async () => {
+                // A running rebuild mirrors the WHOLE point into its shadow; otherwise
+                // the commit reads only what it judges and writes only vector + proof.
+                const mirroring = getGenerationMirror() !== null;
+                const stored = await this.#inner.scroll({ filter: { mustMatchAny: [{ field: 'id', values: points.map(point => point.id) }] }, limit: points.length,
+                    ...(mirroring ? {} : { payloadFields: [...new Set([...COMMIT_FIELDS, ...points.flatMap(point => Object.keys(point.expected))])] }) });
+                const currentById = new Map(stored.points.map(point => [point.id, point.payload]));
+                const lock = peekActiveLock();
+                const patches = [];
+                const positions = [];
+                for (const [index, point] of points.entries()) {
+                    if (point.epoch !== this.writeEpoch())
+                        continue;
+                    const current = currentById.get(point.id);
+                    if (!current || current.recovery_only || current.status === 'deleted')
+                        continue;
+                    if (lock?.mode !== 'dense' || (point.kind === 'dense' ? point.patch.embedding_generation : point.activeGeneration) !== lock.generation)
+                        continue;
+                    if (this.#eligibility && (await this.#eligibility(current)).eligibility !== 'eligible')
+                        continue;
+                    if (point.authorize && !(await point.authorize(current)))
+                        continue;
+                    const payload = current;
+                    if (Object.entries(point.expected).some(([field, expected]) => payload[field] !== expected))
+                        continue;
+                    const stamped = stampPoint({ id: point.id, ...(point.kind === 'dense' ? { vector: point.vector } : {}), payload: { ...current, ...point.patch } });
+                    committed.push(stamped);
+                    patches.push({ id: point.id, ...(point.kind === 'dense' ? { vector: point.vector } : {}),
+                        patch: { ...point.patch, ...(stamped.payload.embed_model ? { embed_model: stamped.payload.embed_model } : {}) } });
+                    positions.push(index);
+                }
+                if (!committed.length)
+                    return;
+                this.#monitor?.record(committed.map(point => point.payload));
+                await this.#observed(committed.map(point => point.payload), () => this.#inner.patchPoints(patches));
+                for (const index of positions)
+                    written[index] = true;
+            };
+            return this.#sourceMutations ? this.#sourceMutations.exclusive(commit) : commit();
+        }, mirror => { if (committed.length)
+            mirror.afterUpsert(committed); }, points.map(point => point.id))));
+        return written;
     }
     async retainPayload(point) {
-        await this.#mirrored(async () => {
+        point = { ...point, payload: { ...point.payload, embedding_status: 'missing' } };
+        await this.#coordinator.lease(false, () => this.#coordinator.points([point.id], () => this.#mirrored(async () => {
             this.#monitor?.record([point.payload]);
             await this.#observed([point.payload], () => this.#inner.retainPayload(point));
-        }, mirror => mirror.afterRetention(point));
+        }, mirror => mirror.afterRetention(point), [point.id])));
     }
     retrieve(id, projection) {
         return this.#inner.retrieve(id, projection);
@@ -156,7 +290,17 @@ export class FilesystemVectorIndex {
             const token = this.#discovery.beginDelete(filter);
             removed = await this.#inner.deleteByFilter(filter).finally(() => this.#discovery?.complete(token));
         };
-        await this.#mirrored(run, (mirror) => mirror.afterDelete(filter));
+        // Drains the collection but keeps the epoch: a late commit for a deleted
+        // point already fails its re-read, and an unrelated in-flight one stays valid.
+        await this.#coordinator.lease(true, () => this.#mirrored(async () => {
+            try {
+                await run();
+            }
+            catch (error) {
+                getGenerationMirror()?.afterUncertainDelete(filter);
+                throw error;
+            }
+        }, (mirror) => mirror.afterDelete(filter)), false);
         return removed;
     }
     upsertBatch;
@@ -182,7 +326,7 @@ export class EmbeddingGenerationChangedError extends Error {
 /** The marker of the active generation, when this process knows it. */
 function activeMarker() {
     const lock = peekActiveLock();
-    return lock ? embedModelMarker(lock.modelId, lock.dimension, lock.embedRecipe) : undefined;
+    return lock?.mode === 'dense' ? embedModelMarker(lock.modelId, lock.dimension, lock.embedRecipe) : undefined;
 }
 /**
  * Stamp one point's payload. The envelope (`id`, `vector`) is passed through
@@ -210,4 +354,94 @@ function stampPoint(point) {
         return point;
     return { ...point, payload };
 }
+/** One coordinator is shared by every wrapper adopting the same backend. */
+class WriteCoordinator {
+    epoch = 0;
+    #readers = 0;
+    #writer = false;
+    #leases = [];
+    #points = new Map();
+    /** `invalidate`: an exclusive lease that also retires every epoch captured before it (maintenance). */
+    lease(exclusive, run, invalidate = exclusive) {
+        return new Promise((resolve, reject) => {
+            this.#leases.push({ exclusive, start: () => {
+                    if (exclusive) {
+                        this.#writer = true;
+                        if (invalidate)
+                            this.epoch += 1;
+                    }
+                    else
+                        this.#readers += 1;
+                    const release = () => {
+                        if (exclusive)
+                            this.#writer = false;
+                        else
+                            this.#readers -= 1;
+                        this.#pump();
+                    };
+                    void Promise.resolve().then(run).then(value => { release(); resolve(value); }, error => { release(); reject(error); });
+                } });
+            this.#pump();
+        });
+    }
+    #pump() {
+        if (this.#writer)
+            return;
+        while (this.#leases.length) {
+            const next = this.#leases[0];
+            if (next.exclusive && this.#readers)
+                return;
+            this.#leases.shift();
+            next.start();
+            if (next.exclusive)
+                return;
+        }
+    }
+    async points(ids, run) {
+        const releases = [];
+        try {
+            for (const id of [...new Set(ids)].sort()) {
+                const previous = this.#points.get(id) ?? Promise.resolve();
+                let release;
+                const current = new Promise(resolve => { release = resolve; });
+                this.#points.set(id, current);
+                await previous;
+                releases.push(() => {
+                    if (this.#points.get(id) === current)
+                        this.#points.delete(id);
+                    release();
+                });
+            }
+            return await run();
+        }
+        finally {
+            for (const release of releases.reverse())
+                release();
+        }
+    }
+}
+const writeCoordinators = new WeakMap();
+/**
+ * Carry only the STORED dense proof across a full payload replacement. A payload
+ * write keeps or DEMOTES the status — never promotes: `missing`/`stale` stay,
+ * `current` turns `stale` when the input no longer matches the active proof.
+ * Only a dense vector write certifies `current`.
+ */
+function stampPayloadPoint(point, previous) {
+    const proof = previous ? {
+        embed_model: previous.embed_model, embedding_status: previous.embedding_status,
+        embedding_input_hash: previous.embedding_input_hash, embedding_generation: previous.embedding_generation,
+        embedding_updated_at: previous.embedding_updated_at,
+    } : { embedding_status: 'missing' };
+    const lock = peekActiveLock();
+    const marker = activeMarker();
+    const input = nodeEmbeddingInputHash(point.payload);
+    if (proof.embedding_status === 'current' && !(marker !== undefined && proof.embedding_input_hash === input
+        && lock?.mode === 'dense' && proof.embedding_generation === lock.generation && proof.embed_model === marker)) {
+        proof.embedding_status = 'stale';
+    }
+    if (point.payload.recovery_only)
+        proof.embedding_status = 'missing';
+    return { ...point, payload: { ...point.payload, ...proof } };
+}
 //# sourceMappingURL=FilesystemVectorIndex.js.map

package/dist/src/vector/FilesystemVectorIndex.js.map

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package/dist/src/vector/InMemoryVectorIndex.d.ts

@@ -1,11 +1,18 @@
-import type { VectorFacetHit, VectorFilter, VectorIndexPort, VectorPoint, VectorReadProjection, VectorSearchHit } from './types.js';
+import type { PayloadDerivation, VectorBackend, VectorFacetHit, VectorFilter, VectorPoint, VectorReadProjection, VectorSearchHit } from './types.js';
 export declare class InMemoryVectorIndex<TPayload extends {
     id: string;
-}> implements VectorIndexPort<TPayload> {
+}> implements VectorBackend<TPayload> {
     #private;
     ensureAgentCollection(_agentId: string): Promise<void>;
     upsert(point: VectorPoint<TPayload>): Promise<void>;
     retainPayload(point: Pick<VectorPoint<TPayload>, 'id' | 'payload'>): Promise<void>;
+    writePayload(point: Pick<VectorPoint<TPayload>, 'id' | 'payload'>): Promise<void>;
+    writePayloads(points: Array<Pick<VectorPoint<TPayload>, 'id' | 'payload'>>, derivation: PayloadDerivation<TPayload>): Promise<void>;
+    patchPoints(points: Array<{
+        id: string;
+        vector?: number[];
+        patch: Partial<TPayload>;
+    }>): Promise<void>;
     retrieve(id: string, projection?: VectorReadProjection): Promise<VectorPoint<TPayload> | null>;
     scroll(params: {
         filter: VectorFilter;

package/dist/src/vector/InMemoryVectorIndex.d.ts.map

@@ -1 +1 @@
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package/dist/src/vector/InMemoryVectorIndex.js

@@ -29,7 +29,9 @@ function textTokens(value) {
     const tokens = value.toLowerCase().split(/[^\p{L}\p{N}]+/u);
     return new Set(tokens.filter((t) => t.length > 0));
 }
-function matchesFilter(payload, filter) {
+function matchesFilter(payload, filter, vector) {
+    if ((filter.mustHasVector ?? []).some(name => name !== '' || !vector?.length))
+        return false;
     const must = filter.must ?? [];
     for (const clause of must) {
         const value = getFieldValue(payload, clause.field);
@@ -150,6 +152,23 @@ export class InMemoryVectorIndex {
     async retainPayload(point) {
         this.#points.set(point.id, { id: point.id, payload: { ...point.payload, id: point.id } });
     }
+    async writePayload(point) {
+        await this.upsert(point);
+    }
+    async writePayloads(points, derivation) {
+        for (const point of points) {
+            const stored = this.#points.get(point.id);
+            await this.upsert({ id: point.id, payload: derivation.derive(point, stored ? projectPayload(stored.payload, derivation.readFields) : undefined) });
+        }
+    }
+    async patchPoints(points) {
+        for (const point of points) {
+            const stored = this.#points.get(point.id);
+            if (!stored)
+                throw new Error(`VECTOR_MISSING_FOR_UPSERT:${point.id}`);
+            this.#points.set(point.id, { id: point.id, vector: point.vector ?? stored.vector, payload: { ...stored.payload, ...point.patch, id: point.id } });
+        }
+    }
     async retrieve(id, projection) {
         const point = this.#points.get(id);
         if (!point)
@@ -174,7 +193,7 @@ export class InMemoryVectorIndex {
             const p = this.#points.get(ids[i]);
             if (!p)
                 continue;
-            if (!matchesFilter(p.payload, params.filter))
+            if (!matchesFilter(p.payload, params.filter, p.vector))
                 continue;
             // The `vector` is kept as-is; Qdrant's scroll always sends
             // `with_vector:false`, so a caller must not rely on it being present from
@@ -193,7 +212,7 @@ export class InMemoryVectorIndex {
     async countByFilter(filter) {
         let n = 0;
         for (const p of this.#points.values()) {
-            if (matchesFilter(p.payload, filter))
+            if (matchesFilter(p.payload, filter, p.vector))
                 n++;
         }
         return n;
@@ -207,7 +226,7 @@ export class InMemoryVectorIndex {
     async facet(params) {
         const counts = new Map();
         for (const p of this.#points.values()) {
-            if (!matchesFilter(p.payload, params.filter))
+            if (!matchesFilter(p.payload, params.filter, p.vector))
                 continue;
             const raw = getFieldValue(p.payload, params.key);
             const values = Array.isArray(raw) ? new Set(raw) : [raw];
@@ -225,7 +244,7 @@ export class InMemoryVectorIndex {
     async deleteByFilter(filter) {
         let deleted = 0;
         for (const [id, p] of this.#points) {
-            if (matchesFilter(p.payload, filter)) {
+            if (matchesFilter(p.payload, filter, p.vector)) {
                 this.#points.delete(id);
                 deleted++;
             }
@@ -236,7 +255,7 @@ export class InMemoryVectorIndex {
         const query = normalize(params.vector);
         const hits = [];
         for (const p of this.#points.values()) {
-            if (!matchesFilter(p.payload, params.filter))
+            if (!matchesFilter(p.payload, params.filter, p.vector))
                 continue;
             const v = p.vector ? normalize(p.vector) : [];
             const score = v.length ? dot(query, v) : 0;