@nerviq/cli 1.29.0 → 1.29.1

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Files changed (80) hide show
  1. package/CHANGELOG.md +1527 -1493
  2. package/README.md +550 -538
  3. package/SECURITY.md +82 -82
  4. package/bin/cli.js +2562 -2558
  5. package/docs/api-reference.md +356 -356
  6. package/docs/audit-fix.md +109 -0
  7. package/docs/autofix.md +3 -62
  8. package/docs/getting-started.md +1 -1
  9. package/docs/index.html +592 -592
  10. package/docs/integration-contracts.md +287 -287
  11. package/docs/maintenance.md +128 -128
  12. package/docs/new-platform-guide.md +202 -202
  13. package/docs/release-process.md +63 -0
  14. package/docs/shallow-risk.md +244 -244
  15. package/docs/why-nerviq.md +82 -82
  16. package/package.json +67 -67
  17. package/src/aider/activity.js +226 -226
  18. package/src/aider/context.js +162 -162
  19. package/src/aider/freshness.js +123 -123
  20. package/src/aider/techniques.js +3465 -3465
  21. package/src/audit/layers.js +180 -180
  22. package/src/audit.js +1032 -1032
  23. package/src/benchmark.js +299 -299
  24. package/src/codex/activity.js +324 -324
  25. package/src/codex/freshness.js +142 -142
  26. package/src/codex/techniques.js +4895 -4895
  27. package/src/context.js +326 -326
  28. package/src/continuous-ops.js +11 -1
  29. package/src/convert.js +340 -340
  30. package/src/copilot/config-parser.js +280 -280
  31. package/src/copilot/context.js +218 -218
  32. package/src/copilot/freshness.js +177 -177
  33. package/src/copilot/patch.js +238 -238
  34. package/src/copilot/techniques.js +3578 -3578
  35. package/src/cursor/freshness.js +194 -194
  36. package/src/cursor/patch.js +243 -243
  37. package/src/cursor/techniques.js +3735 -3735
  38. package/src/doctor.js +201 -201
  39. package/src/fix-engine.js +511 -8
  40. package/src/formatters/csv.js +86 -86
  41. package/src/formatters/junit.js +123 -123
  42. package/src/formatters/markdown.js +164 -164
  43. package/src/formatters/otel.js +151 -151
  44. package/src/freshness.js +156 -156
  45. package/src/gemini/activity.js +402 -402
  46. package/src/gemini/context.js +290 -290
  47. package/src/gemini/freshness.js +183 -183
  48. package/src/gemini/patch.js +229 -229
  49. package/src/gemini/techniques.js +3811 -3811
  50. package/src/governance.js +533 -533
  51. package/src/harmony/audit.js +306 -306
  52. package/src/i18n.js +63 -63
  53. package/src/insights.js +119 -119
  54. package/src/integrations.js +134 -134
  55. package/src/locales/en.json +33 -33
  56. package/src/locales/es.json +33 -33
  57. package/src/migrate.js +354 -354
  58. package/src/opencode/activity.js +286 -286
  59. package/src/opencode/freshness.js +137 -137
  60. package/src/opencode/techniques.js +3450 -3450
  61. package/src/setup/analysis.js +12 -12
  62. package/src/setup.js +7 -6
  63. package/src/shallow-risk/index.js +56 -56
  64. package/src/shallow-risk/patterns/agent-config-cross-platform-drift.js +50 -50
  65. package/src/shallow-risk/patterns/agent-config-dangerous-autoapprove.js +46 -46
  66. package/src/shallow-risk/patterns/agent-config-deprecated-keys.js +46 -46
  67. package/src/shallow-risk/patterns/agent-config-missing-file.js +317 -317
  68. package/src/shallow-risk/patterns/agent-config-secret-literal.js +49 -49
  69. package/src/shallow-risk/patterns/agent-config-stack-contradiction.js +34 -34
  70. package/src/shallow-risk/patterns/hook-script-missing.js +70 -70
  71. package/src/shallow-risk/patterns/mcp-server-no-allowlist.js +52 -52
  72. package/src/shallow-risk/shared.js +648 -648
  73. package/src/source-urls.js +295 -295
  74. package/src/state-paths.js +85 -85
  75. package/src/supplemental-checks.js +805 -805
  76. package/src/telemetry.js +160 -160
  77. package/src/windsurf/context.js +359 -359
  78. package/src/windsurf/freshness.js +194 -194
  79. package/src/windsurf/patch.js +231 -231
  80. package/src/windsurf/techniques.js +3779 -3779
@@ -1,287 +1,287 @@
1
- # Integration Contract Pack
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-
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- This document centralizes Nerviq's integration surfaces so external systems can adopt one stable package instead of scraping CLI text output.
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-
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- ## Included contract surfaces
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-
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- - `nerviq serve` live OpenAPI contract via `GET /api/openapi.json`
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- - `nerviq-mcp` stdio JSON-RPC 2.0 transport for MCP hosts
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- - Generic audit webhook event contract via `contracts/audit-webhook-event.schema.json`
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- - CI reference patterns for GitHub Actions, GitLab, Bitbucket, and generic shell runners
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- - SDK usage examples through `sdk/README.md`
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-
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- ## 1. Local REST contract
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-
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- Start the local API server:
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-
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- ```bash
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- npx @nerviq/cli serve --port 3000
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- curl http://127.0.0.1:3000/api/openapi.json > nerviq-openapi.json
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- ```
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-
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- Current GET endpoints:
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-
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- - `/api/openapi.json`
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- - `/api/health`
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- - `/api/audit`
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- - `/api/harmony`
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- - `/api/catalog`
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-
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- The live OpenAPI document is the canonical machine-readable contract for local HTTP consumers.
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-
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- ## 2. MCP transport (stdio JSON-RPC 2.0)
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-
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- Nerviq also ships a separate MCP server binary for hosts that speak Model Context Protocol over stdio.
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-
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- Use `nerviq serve` for local HTTP/OpenAPI consumers.
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- Use `nerviq-mcp` when the host expects MCP over stdio.
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-
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- Example host registration:
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-
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- ```json
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- {
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- "mcpServers": {
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- "nerviq": {
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- "command": "npx",
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- "args": ["-y", "-p", "@nerviq/cli", "nerviq-mcp"]
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- }
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- }
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- }
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- ```
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-
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- The runtime implementation lives in `src/mcp-server.js` and speaks JSON-RPC 2.0 over stdin/stdout.
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-
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- ## 3. Generic webhook event contract
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-
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- When `audit` is called with `--webhook` and the URL is not a Slack or Discord webhook, Nerviq now emits a stable generic JSON event contract.
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-
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- Schema:
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-
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- - `contracts/audit-webhook-event.schema.json`
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-
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- Example:
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-
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- ```json
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- {
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- "event": "nerviq.audit.completed",
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- "schemaVersion": "1.0",
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- "generatedAt": "2026-04-09T12:00:00.000Z",
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- "platform": "claude",
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- "score": 84,
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- "passed": 196,
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- "failed": 34,
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- "results": [],
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- "data": {
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- "platform": "claude",
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- "platformLabel": "Claude",
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- "score": 84,
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- "scoreType": "live-audit-score",
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- "organicScore": 68,
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- "passed": 196,
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- "failed": 34,
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- "skipped": 28,
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- "checkCount": 258,
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- "topNextActions": [],
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- "quickWins": [],
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- "scoreCoaching": {
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- "currentScore": 84,
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- "nextMilestone": 90,
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- "pointsNeeded": 6,
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- "fixesNeeded": 2
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- },
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- "suggestedNextCommand": "npx nerviq fix verificationLoop"
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- },
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- "meta": {
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- "cliVersion": "1.29.0",
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- "source": "nerviq-cli",
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- "webhookFormat": "generic-audit-event"
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- }
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- }
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- ```
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-
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- Compatibility note:
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-
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- - Top-level `platform`, `score`, `passed`, `failed`, and `results` remain present for older consumers
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- - New consumers should prefer the nested `data` + `meta` contract
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-
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- ## 4. CI reference patterns
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-
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- See:
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-
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- - `docs/ci-integration.md`
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- - `action/README.md`
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- - `docs/gitlab-ci-template.yml`
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- - `docs/bitbucket-pipe.yml`
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-
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- Recommended patterns:
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-
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- ### Score gate
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-
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- ```bash
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- npx @nerviq/cli audit --threshold 60
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- ```
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-
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- ### PR drift gate
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-
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- ```bash
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- npx @nerviq/cli audit --diff-only --drift-mode ci --threshold 60
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- ```
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-
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- ### Fleet rollup artifact
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-
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- ```bash
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- npx @nerviq/cli org scan ./app ./api ./infra --json --out nerviq-fleet.json
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- ```
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-
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- ## 5. SDK reference
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-
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- See:
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-
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- - `sdk/README.md`
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- - `docs/api-reference.md`
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-
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- Recommended SDK surfaces:
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-
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- - Stable: `audit`, `harmonyAudit`, `detectPlatforms`, `getCatalog`
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- - Experimental: `synergyReport`, `routeTask`
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-
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- ## Why this pack exists
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-
150
- - External dashboards can bind to explicit contracts instead of scraping CLI text
151
- - CI systems can use repeatable patterns for threshold gates, drift gates, and fleet rollups
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- - SDK users and HTTP users now share one public integration story instead of separate ad-hoc examples
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-
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- ## 6. First-tier integration gate
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-
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- Nerviq does not treat every external surface as equally ready on day one.
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-
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- Before broader distribution surfaces such as GitHub Marketplace listings, JetBrains plugins, or similar first-tier integrations are unblocked, the release bar must be green across:
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-
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- - contract stability
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- - public proof density
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- - operational reliability
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- - clear ownership and support posture
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- - category fit
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-
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- See `docs/first-tier-integration-gate.md` for the explicit gate and current posture.
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-
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- ## 7. CI output format contracts
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-
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- `nerviq audit --format=<name>` emits machine-readable output shapes for standard
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- CI surfaces. All six formats share the same underlying audit result object; they
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- differ only in rendering.
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-
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- ### markdown (`--format=markdown`)
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-
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- GitHub-flavoured markdown suitable for a PR comment. Contract:
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-
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- - first line is an `## Score: N/100` heading followed by a shields.io badge
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- - second block lists `**Platform:**` and `**Checks:**` summary
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- - `### Top next actions` section with up to 5 items rendered as a GitHub
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- task-list checklist: `- [ ] **[SEVERITY] Title** (` + backtick key + `)`
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- optionally suffixed with ` — ` + backtick file:line
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- - when `auditResult.shallowRiskHints` is present, a `### Shallow Risk (experimental, opt-in)`
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- section appears immediately after `### Top next actions`, with the
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- shallow-risk banner rendered as a blockquote and each hint listed with
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- severity, key, and file:line
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- - `<details><summary>All failed checks (N)</summary>` collapsible block
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- containing a GitHub pipe-table with columns
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- `key | name | category | rating | file | line`. Pipe characters inside cells
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- are backslash-escaped.
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- - footer line `Generated by [Nerviq](https://nerviq.net) vX.Y.Z · TIMESTAMP`
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- - no raw HTML other than `<details>` / `<summary>`
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-
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- ### junit (`--format=junit`)
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-
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- JUnit XML, Jenkins-compatible. Contract:
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-
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- - first line is `<?xml version="1.0" encoding="UTF-8"?>`
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- - root element `<testsuites name="nerviq" tests="N" failures="F" skipped="S" time="0">`
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- - one `<testsuite>` per check category, with attributes
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- `name=category`, `tests`, `failures`, `skipped`, `time`, `timestamp`,
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- `package="nerviq.PLATFORM"`
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- - when `auditResult.shallowRiskHints` is present, a separate
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- `<testsuite name="shallow-risk">` is emitted so CI consumers can
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- filter it independently from governance scoring suites
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- - one `<testcase>` per check, with `classname=category` and `name=key`
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- - failed checks emit `<failure message="..." type="SEVERITY">BODY</failure>`
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- where message = `fix || name`, type = severity/impact, body contains
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- `name [at file:line] [(sourceUrl)]`
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- - skipped checks emit `<skipped/>`
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- - all attribute values and text nodes XML-escape `& < > " '`
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-
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- ### csv (`--format=csv`)
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-
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- RFC 4180 CSV. Contract:
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-
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- - first row = header `key,id,name,category,layer,rating,severity,passed,file,line,sourceUrl,fix,projectedScoreDelta,projectedScoreAfter`
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- - `layer` is one of `governance`, `drift`, `hygiene`, or `shallow-risk` (see §8)
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- - one row per check result in `auditResult.results`
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- - when `auditResult.shallowRiskHints` is present, those hints are
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- appended as additional rows tagged with `layer=shallow-risk`
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- - `projectedScoreDelta` / `projectedScoreAfter` are populated only for rows whose
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- `key` appears in `auditResult.topNextActions` (the projection is computed per
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- top action, not per every check). Other rows leave both columns empty.
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- - fields containing comma, double-quote, CR, or LF are wrapped in double-quotes
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- - internal double-quotes are escaped by doubling (`""`)
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- - no UTF-8 BOM
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- - line separator = LF
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-
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- These contracts are the stable consumer API for `--format=markdown|junit|csv`.
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- Downstream wrappers (GitHub Actions, Jenkins plugins, GitLab reporters,
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- dashboards) should bind to these shapes rather than scraping the text output.
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-
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- ## 8. Audit layers (scope taxonomy)
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-
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- Every check in the NERVIQ audit is tagged with exactly one `layer`. The
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- layer answers the question "what kind of problem does this check look
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- for?" and gives evaluators an explicit, stable map of what NERVIQ covers
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- and what it deliberately does not.
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-
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- | Layer | Short definition | Example checks |
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- | -------------- | ------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------- |
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- | `governance` | Agent configuration posture: presence, content, and quality of agent-instruction files and platform settings. "Does my agent know X?" | `claudeMdExists`, `codexAgentsMdSubstantive`, `geminiSettingsExists`, MCP servers, hook presence |
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- | `drift` | Cross-platform consistency and declared-vs-actual alignment. "Do two places agree on X?" | Harmony drift, Gemini propagation completeness, "rules consistent across surfaces", pack agreement |
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- | `hygiene` | Repo-level cleanliness adjacent to agents — the engineering baseline that makes an agent's job easier. | `.gitignore`, `CHANGELOG`, `SECURITY.md`, `LICENSE`, `.editorconfig`, Node version pinning |
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- | `shallow-risk` | Opt-in boundary checks that sit at the agent-config <-> codebase edge and are emitted in parallel to the governance audit. | `agent-config-missing-file`, `mcp-server-no-allowlist`, `agent-config-dangerous-autoapprove` |
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-
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- **Disambiguation rules** (apply when a check could plausibly fit more than one layer):
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-
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- - If the check asks "does my agent know X?" → `governance`.
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- - If the check asks "do two places agree on X?" → `drift`.
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- - If the check asks "does the repo have standard engineering hygiene that makes the agent's job easier?" → `hygiene`.
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- - When in doubt, default to `hygiene`. A mild misclassification is recoverable; a missing tag breaks the coverage contract.
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-
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- **No deep-review lane.** There is intentionally no `deep-review`,
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- `security`, or `code-review` layer. NERVIQ audits agent configuration and
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- the cleanliness of the repo boundary an agent operates inside. It does
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- not perform dataflow analysis, SAST, or general code review — those are
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- out of scope and left to dedicated tools. This is the contract that
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- lets evaluators know where our claim to ground-truth starts and stops.
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-
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- ### 8.1 Shallow-risk as a parallel lane
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-
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- `shallow-risk` is the one layer that does **not** roll into the governance
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- score. When enabled via `nerviq audit --shallow-risk`, findings are emitted
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- through `auditResult.shallowRiskHints[]` and rendered separately in text,
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- Markdown, JUnit, and CSV. They are intentionally excluded from:
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-
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- - `auditResult.score`
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- - `auditResult.organicScore`
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- - `auditResult.passed` / `failed` / `skipped`
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- - `auditResult.topNextActions`
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- - `auditResult.layerSummary.*.failed`
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-
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- This keeps the governance pipeline stable while still surfacing the
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- agent-config <-> codebase red flags documented in [docs/shallow-risk.md](shallow-risk.md).
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-
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- **Surfaces.** The `layer` field appears in:
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-
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- - `auditResult.results[].layer` (JSON)
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- - `auditResult.topNextActions[].layer` (JSON)
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- - `auditResult.layerSummary` (JSON) — per-layer `{ total, passed, failed, skipped }`
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- - CSV output — column between `category` and `rating`
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- - JUnit output — attribute on each `<testcase layer="…">`
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- - Markdown output — column in the failed-checks table plus a `_layer: X_` suffix on each top-action checklist item
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- - Text output — "Coverage by layer:" summary block and a small `[layer]` prefix on failed-check names
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-
1
+ # Integration Contract Pack
2
+
3
+ This document centralizes Nerviq's integration surfaces so external systems can adopt one stable package instead of scraping CLI text output.
4
+
5
+ ## Included contract surfaces
6
+
7
+ - `nerviq serve` live OpenAPI contract via `GET /api/openapi.json`
8
+ - `nerviq-mcp` stdio JSON-RPC 2.0 transport for MCP hosts
9
+ - Generic audit webhook event contract via `contracts/audit-webhook-event.schema.json`
10
+ - CI reference patterns for GitHub Actions, GitLab, Bitbucket, and generic shell runners
11
+ - SDK usage examples through `sdk/README.md`
12
+
13
+ ## 1. Local REST contract
14
+
15
+ Start the local API server:
16
+
17
+ ```bash
18
+ npx @nerviq/cli serve --port 3000
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+ curl http://127.0.0.1:3000/api/openapi.json > nerviq-openapi.json
20
+ ```
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+
22
+ Current GET endpoints:
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+
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+ - `/api/openapi.json`
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+ - `/api/health`
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+ - `/api/audit`
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+ - `/api/harmony`
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+ - `/api/catalog`
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+
30
+ The live OpenAPI document is the canonical machine-readable contract for local HTTP consumers.
31
+
32
+ ## 2. MCP transport (stdio JSON-RPC 2.0)
33
+
34
+ Nerviq also ships a separate MCP server binary for hosts that speak Model Context Protocol over stdio.
35
+
36
+ Use `nerviq serve` for local HTTP/OpenAPI consumers.
37
+ Use `nerviq-mcp` when the host expects MCP over stdio.
38
+
39
+ Example host registration:
40
+
41
+ ```json
42
+ {
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+ "mcpServers": {
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+ "nerviq": {
45
+ "command": "npx",
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+ "args": ["-y", "-p", "@nerviq/cli", "nerviq-mcp"]
47
+ }
48
+ }
49
+ }
50
+ ```
51
+
52
+ The runtime implementation lives in `src/mcp-server.js` and speaks JSON-RPC 2.0 over stdin/stdout.
53
+
54
+ ## 3. Generic webhook event contract
55
+
56
+ When `audit` is called with `--webhook` and the URL is not a Slack or Discord webhook, Nerviq now emits a stable generic JSON event contract.
57
+
58
+ Schema:
59
+
60
+ - `contracts/audit-webhook-event.schema.json`
61
+
62
+ Example:
63
+
64
+ ```json
65
+ {
66
+ "event": "nerviq.audit.completed",
67
+ "schemaVersion": "1.0",
68
+ "generatedAt": "2026-04-09T12:00:00.000Z",
69
+ "platform": "claude",
70
+ "score": 84,
71
+ "passed": 196,
72
+ "failed": 34,
73
+ "results": [],
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+ "data": {
75
+ "platform": "claude",
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+ "platformLabel": "Claude",
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+ "score": 84,
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+ "scoreType": "live-audit-score",
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+ "organicScore": 68,
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+ "passed": 196,
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+ "failed": 34,
82
+ "skipped": 28,
83
+ "checkCount": 258,
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+ "topNextActions": [],
85
+ "quickWins": [],
86
+ "scoreCoaching": {
87
+ "currentScore": 84,
88
+ "nextMilestone": 90,
89
+ "pointsNeeded": 6,
90
+ "fixesNeeded": 2
91
+ },
92
+ "suggestedNextCommand": "npx nerviq fix verificationLoop"
93
+ },
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+ "meta": {
95
+ "cliVersion": "1.29.1",
96
+ "source": "nerviq-cli",
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+ "webhookFormat": "generic-audit-event"
98
+ }
99
+ }
100
+ ```
101
+
102
+ Compatibility note:
103
+
104
+ - Top-level `platform`, `score`, `passed`, `failed`, and `results` remain present for older consumers
105
+ - New consumers should prefer the nested `data` + `meta` contract
106
+
107
+ ## 4. CI reference patterns
108
+
109
+ See:
110
+
111
+ - `docs/ci-integration.md`
112
+ - `action/README.md`
113
+ - `docs/gitlab-ci-template.yml`
114
+ - `docs/bitbucket-pipe.yml`
115
+
116
+ Recommended patterns:
117
+
118
+ ### Score gate
119
+
120
+ ```bash
121
+ npx @nerviq/cli audit --threshold 60
122
+ ```
123
+
124
+ ### PR drift gate
125
+
126
+ ```bash
127
+ npx @nerviq/cli audit --diff-only --drift-mode ci --threshold 60
128
+ ```
129
+
130
+ ### Fleet rollup artifact
131
+
132
+ ```bash
133
+ npx @nerviq/cli org scan ./app ./api ./infra --json --out nerviq-fleet.json
134
+ ```
135
+
136
+ ## 5. SDK reference
137
+
138
+ See:
139
+
140
+ - `sdk/README.md`
141
+ - `docs/api-reference.md`
142
+
143
+ Recommended SDK surfaces:
144
+
145
+ - Stable: `audit`, `harmonyAudit`, `detectPlatforms`, `getCatalog`
146
+ - Experimental: `synergyReport`, `routeTask`
147
+
148
+ ## Why this pack exists
149
+
150
+ - External dashboards can bind to explicit contracts instead of scraping CLI text
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+ - CI systems can use repeatable patterns for threshold gates, drift gates, and fleet rollups
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+ - SDK users and HTTP users now share one public integration story instead of separate ad-hoc examples
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+
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+ ## 6. First-tier integration gate
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+
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+ Nerviq does not treat every external surface as equally ready on day one.
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+
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+ Before broader distribution surfaces such as GitHub Marketplace listings, JetBrains plugins, or similar first-tier integrations are unblocked, the release bar must be green across:
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+
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+ - contract stability
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+ - public proof density
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+ - operational reliability
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+ - clear ownership and support posture
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+ - category fit
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+
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+ See `docs/first-tier-integration-gate.md` for the explicit gate and current posture.
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+
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+ ## 7. CI output format contracts
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+
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+ `nerviq audit --format=<name>` emits machine-readable output shapes for standard
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+ CI surfaces. All six formats share the same underlying audit result object; they
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+ differ only in rendering.
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+
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+ ### markdown (`--format=markdown`)
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+
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+ GitHub-flavoured markdown suitable for a PR comment. Contract:
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+
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+ - first line is an `## Score: N/100` heading followed by a shields.io badge
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+ - second block lists `**Platform:**` and `**Checks:**` summary
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+ - `### Top next actions` section with up to 5 items rendered as a GitHub
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+ task-list checklist: `- [ ] **[SEVERITY] Title** (` + backtick key + `)`
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+ optionally suffixed with ` — ` + backtick file:line
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+ - when `auditResult.shallowRiskHints` is present, a `### Shallow Risk (experimental, opt-in)`
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+ section appears immediately after `### Top next actions`, with the
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+ shallow-risk banner rendered as a blockquote and each hint listed with
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+ severity, key, and file:line
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+ - `<details><summary>All failed checks (N)</summary>` collapsible block
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+ containing a GitHub pipe-table with columns
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+ `key | name | category | rating | file | line`. Pipe characters inside cells
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+ are backslash-escaped.
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+ - footer line `Generated by [Nerviq](https://nerviq.net) vX.Y.Z · TIMESTAMP`
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+ - no raw HTML other than `<details>` / `<summary>`
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+
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+ ### junit (`--format=junit`)
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+
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+ JUnit XML, Jenkins-compatible. Contract:
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+
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+ - first line is `<?xml version="1.0" encoding="UTF-8"?>`
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+ - root element `<testsuites name="nerviq" tests="N" failures="F" skipped="S" time="0">`
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+ - one `<testsuite>` per check category, with attributes
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+ `name=category`, `tests`, `failures`, `skipped`, `time`, `timestamp`,
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+ `package="nerviq.PLATFORM"`
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+ - when `auditResult.shallowRiskHints` is present, a separate
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+ `<testsuite name="shallow-risk">` is emitted so CI consumers can
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+ filter it independently from governance scoring suites
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+ - one `<testcase>` per check, with `classname=category` and `name=key`
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+ - failed checks emit `<failure message="..." type="SEVERITY">BODY</failure>`
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+ where message = `fix || name`, type = severity/impact, body contains
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+ `name [at file:line] [(sourceUrl)]`
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+ - skipped checks emit `<skipped/>`
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+ - all attribute values and text nodes XML-escape `& < > " '`
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+
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+ ### csv (`--format=csv`)
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+
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+ RFC 4180 CSV. Contract:
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+
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+ - first row = header `key,id,name,category,layer,rating,severity,passed,file,line,sourceUrl,fix,projectedScoreDelta,projectedScoreAfter`
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+ - `layer` is one of `governance`, `drift`, `hygiene`, or `shallow-risk` (see §8)
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+ - one row per check result in `auditResult.results`
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+ - when `auditResult.shallowRiskHints` is present, those hints are
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+ appended as additional rows tagged with `layer=shallow-risk`
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+ - `projectedScoreDelta` / `projectedScoreAfter` are populated only for rows whose
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+ `key` appears in `auditResult.topNextActions` (the projection is computed per
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+ top action, not per every check). Other rows leave both columns empty.
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+ - fields containing comma, double-quote, CR, or LF are wrapped in double-quotes
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+ - internal double-quotes are escaped by doubling (`""`)
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+ - no UTF-8 BOM
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+ - line separator = LF
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+
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+ These contracts are the stable consumer API for `--format=markdown|junit|csv`.
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+ Downstream wrappers (GitHub Actions, Jenkins plugins, GitLab reporters,
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+ dashboards) should bind to these shapes rather than scraping the text output.
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+
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+ ## 8. Audit layers (scope taxonomy)
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+
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+ Every check in the NERVIQ audit is tagged with exactly one `layer`. The
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+ layer answers the question "what kind of problem does this check look
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+ for?" and gives evaluators an explicit, stable map of what NERVIQ covers
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+ and what it deliberately does not.
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+
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+ | Layer | Short definition | Example checks |
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+ | -------------- | ------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------- |
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+ | `governance` | Agent configuration posture: presence, content, and quality of agent-instruction files and platform settings. "Does my agent know X?" | `claudeMdExists`, `codexAgentsMdSubstantive`, `geminiSettingsExists`, MCP servers, hook presence |
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+ | `drift` | Cross-platform consistency and declared-vs-actual alignment. "Do two places agree on X?" | Harmony drift, Gemini propagation completeness, "rules consistent across surfaces", pack agreement |
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+ | `hygiene` | Repo-level cleanliness adjacent to agents — the engineering baseline that makes an agent's job easier. | `.gitignore`, `CHANGELOG`, `SECURITY.md`, `LICENSE`, `.editorconfig`, Node version pinning |
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+ | `shallow-risk` | Opt-in boundary checks that sit at the agent-config <-> codebase edge and are emitted in parallel to the governance audit. | `agent-config-missing-file`, `mcp-server-no-allowlist`, `agent-config-dangerous-autoapprove` |
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+
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+ **Disambiguation rules** (apply when a check could plausibly fit more than one layer):
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+
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+ - If the check asks "does my agent know X?" → `governance`.
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+ - If the check asks "do two places agree on X?" → `drift`.
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+ - If the check asks "does the repo have standard engineering hygiene that makes the agent's job easier?" → `hygiene`.
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+ - When in doubt, default to `hygiene`. A mild misclassification is recoverable; a missing tag breaks the coverage contract.
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+
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+ **No deep-review lane.** There is intentionally no `deep-review`,
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+ `security`, or `code-review` layer. NERVIQ audits agent configuration and
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+ the cleanliness of the repo boundary an agent operates inside. It does
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+ not perform dataflow analysis, SAST, or general code review — those are
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+ out of scope and left to dedicated tools. This is the contract that
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+ lets evaluators know where our claim to ground-truth starts and stops.
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+
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+ ### 8.1 Shallow-risk as a parallel lane
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+
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+ `shallow-risk` is the one layer that does **not** roll into the governance
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+ score. When enabled via `nerviq audit --shallow-risk`, findings are emitted
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+ through `auditResult.shallowRiskHints[]` and rendered separately in text,
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+ Markdown, JUnit, and CSV. They are intentionally excluded from:
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+
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+ - `auditResult.score`
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+ - `auditResult.organicScore`
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+ - `auditResult.passed` / `failed` / `skipped`
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+ - `auditResult.topNextActions`
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+ - `auditResult.layerSummary.*.failed`
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+
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+ This keeps the governance pipeline stable while still surfacing the
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+ agent-config <-> codebase red flags documented in [docs/shallow-risk.md](shallow-risk.md).
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+
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+ **Surfaces.** The `layer` field appears in:
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+
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+ - `auditResult.results[].layer` (JSON)
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+ - `auditResult.topNextActions[].layer` (JSON)
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+ - `auditResult.layerSummary` (JSON) — per-layer `{ total, passed, failed, skipped }`
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+ - CSV output — column between `category` and `rating`
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+ - JUnit output — attribute on each `<testcase layer="…">`
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+ - Markdown output — column in the failed-checks table plus a `_layer: X_` suffix on each top-action checklist item
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+ - Text output — "Coverage by layer:" summary block and a small `[layer]` prefix on failed-check names
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+