@nerviq/cli 1.29.0 → 1.29.1

package/docs/audit-fix.md

@@ -0,0 +1,109 @@
+# Audit Autofix with `nerviq audit --fix`
+
+`nerviq audit --fix` is the safe autofix lane for deterministic governance and hygiene issues.
+
+It is intentionally conservative:
+
+- Dry-run is the default.
+- Nerviq writes a unified diff patch to `audit-fix.patch` unless you redirect it with `--out`.
+- Only deterministic, file-level fixes are planned.
+- Anything that still needs repo judgment is listed as advisory-only and left untouched.
+
+## Command surface
+
+```bash
+nerviq audit --fix
+nerviq audit --fix --out custom-audit-fix.patch
+nerviq audit --fix --out -
+nerviq audit --fix --apply --auto
+nerviq audit --fix --pr
+```
+
+- `nerviq audit --fix`
+  Runs the audit, builds a deterministic autofix plan, prints a `git status --short` style summary, and writes `audit-fix.patch`.
+
+- `nerviq audit --fix --out custom-audit-fix.patch`
+  Writes the patch to a custom file path relative to the audited repo.
+
+- `nerviq audit --fix --out -`
+  Prints the unified diff to stdout instead of creating a patch file.
+
+- `nerviq audit --fix --apply --auto`
+  Applies the deterministic fixes, writes a rollback manifest under `.nerviq/rollbacks/`, and re-runs the audit.
+
+- `nerviq audit --fix --pr`
+  Applies the same deterministic fixes, creates a local branch named `nerviq/autofix-<timestamp>`, stages the changed files plus the patch, and leaves the review to the user.
+
+## Hard safety boundaries
+
+Audit autofix never modifies source code.
+
+The path allowlist is intentionally narrow:
+
+- `CLAUDE.md`
+- `.claude/CLAUDE.md`
+- `AGENTS.md`
+- `.codex/AGENTS.md`
+- `.claude/settings.json`
+- `.gitignore`
+- `.editorconfig`
+- `CHANGELOG.md`
+- `CONTRIBUTING.md`
+- `LICENSE`
+
+If a planned change falls outside that list, Nerviq skips it.
+
+Files that contain the literal `DO NOT AUTOEDIT` marker are also skipped.
+
+## What is considered deterministic
+
+Examples of safe, deterministic fixes in this lane:
+
+- create `CLAUDE.md` or `AGENTS.md` boilerplate when the instruction file is missing
+- add canonical verification commands to an existing instruction file
+- create `.claude/settings.json` with deny rules that protect `.env` and secret-like paths
+- add `.env`, `.env.*`, and local override files to `.gitignore`
+- create `.editorconfig`, `CHANGELOG.md`, `CONTRIBUTING.md`, or `LICENSE` placeholders
+
+Examples that stay advisory-only:
+
+- anything that changes product code
+- fixes that need a repo-specific architecture decision
+- hooks, commands, or permission policies that require team judgment
+- content changes where Nerviq cannot prove a safe template
+
+## Evidence model
+
+Every proposed change is linked to file-level evidence:
+
+- existing findings use the audit result's `file:line` evidence when available
+- missing-file fixes fall back to the target file at line `1`
+
+This keeps the autofix plan aligned with the CTO-04 file-evidence contract.
+
+## Output contract
+
+The dry-run summary shows one line per planned file operation:
+
+```text
+  A  CLAUDE.md            (CLAUDE.md:1)            [claudeMd, verificationLoop]
+  M  .gitignore           (.gitignore:1)          [gitIgnoreEnv]
+  A  .claude/settings.json (.claude/settings.json:1) [secretsProtection]
+```
+
+- `A` means a new file will be created.
+- `M` means an existing file will be patched.
+- The `(file:line)` segment shows the evidence or insertion anchor.
+- The bracketed list shows which failed checks the operation addresses.
+
+## Exit codes
+
+- `0` plan generated successfully, or apply completed and the targeted deterministic checks now pass
+- `1` apply attempted but at least one targeted deterministic check still failed after re-audit
+- `2` no deterministic audit autofixes are available, or the flag combination is invalid
+
+## Notes
+
+- `--apply` requires `--auto`. The dry-run path is the safe default.
+- `--pr` implies the apply path and requires a git repository.
+- Audit autofix is not a substitute for a full review. It handles the obvious, localized file work and leaves judgment-heavy items as advisories.

package/docs/autofix.md

@@ -1,64 +1,5 @@
-# Autofix with `nerviq audit --fix`
+# Autofix docs moved
 
-`nerviq audit --fix` runs the normal audit, applies the fixable critical recommendations that are in scope for autofix, and then re-audits the repo.
+The current `audit --fix` contract lives in [`docs/audit-fix.md`](audit-fix.md).
 
-## Command surface
-
-```bash
-nerviq audit --fix
-nerviq audit --fix --auto
-nerviq audit --fix --dry-run
-```
-
-- `nerviq audit --fix`
-  Uses the conservative default flow. Nerviq plans the critical fixes, shows the file diff, and asks for confirmation per file before writing.
-
-- `nerviq audit --fix --auto`
-  Applies the same critical fixes without prompts. This is the intended mode for CI or scripted remediation.
-
-- `nerviq audit --fix --dry-run`
-  Shows the proposed diff and exits without writing files.
-
-## What v1 fixes
-
-This first pass focuses on instruction-surface remediation:
-
-- Missing `CLAUDE.md` baseline instructions.
-- Missing verification guidance for critical audit checks.
-- Hygiene templates that can be created safely (`LICENSE`, `CHANGELOG.md`, `CONTRIBUTING.md`) through the shared fix engine.
-
-Autofix deliberately does **not** rewrite security, hooks, or permission-sensitive findings in this release.
-
-## Safety model
-
-- Dry-run stays dry: no file writes and no rollback artifacts.
-- Files that contain the literal `DO NOT AUTOEDIT` marker are skipped.
-- `audit --fix` only targets fixable **critical** findings in this release.
-- A rollback manifest is written to `.nerviq/rollbacks/` after successful writes.
-- Nerviq re-audits after applying fixes and exits with a non-zero status if the targeted checks still fail.
-
-## Exit codes
-
-- `0`: all targeted fixes applied and the targeted checks pass after re-audit
-- `1`: a targeted fix failed, was skipped for safety, or still fails after re-audit
-- `2`: bad flag combination or no fixable critical findings are available
-
-## Examples
-
-Preview the exact patch without touching the working tree:
-
-```bash
-nerviq audit --fix --dry-run
-```
-
-Apply fixable critical items in CI:
-
-```bash
-nerviq audit --fix --auto
-```
-
-Apply with per-file confirmation in an interactive terminal:
-
-```bash
-nerviq audit --fix
-```
+This legacy path stays here so older links do not break.

package/docs/getting-started.md

@@ -110,7 +110,7 @@ Once the six-step path makes sense, then go deeper:
 
 If you want a public inspectable example, see:
 
-- [DnaFin/nerviq-multi-agent-before-after](https://github.com/DnaFin/nerviq-multi-agent-before-after)
+- [nerviq/nerviq-multi-agent-before-after](https://github.com/nerviq/nerviq-multi-agent-before-after)
 
 ## Need help?